IL284368A

Factor ix polypeptides and methods of use thereof

Abstract

This record has no abstract on file.

IL284368A, drawing sheet 1
Sheet 1 of 56

Term

No projected expiry on record.

  1. Priority
  2. Filed
  3. Published
  4. Today

121 claims: 17 independent, 104 dependent

  1. 1
    A method of administering Factor IX to a human subject in need thereof, comprising administering to the subject a dose of at least about 25 lU/kg of a chimeric polypeptide comprising Factor IX and a FcRn binding partner (FcRn BP) at about a once weekly or longer dosing interval.
  2. 2
    A method of administering Factor IX to a human subject in need thereof, comprising administering to the subject a dose of at least about 10 or at least about 20 lU/kg of a chimeric polypeptide comprising Factor IX and a FcRn binding partner (FcRn BP) at about a once weekly or longer dosing interval.
  3. 3
    A method of administering Factor IX to a human subject in need thereof, comprising administering to the subject a dose of at least about 10 lU/kg of a chimeric polypeptide comprising Factor IX and XTEN at about a once weekly or longer dosing interval.
  4. 4
    The method of any of claims 1-3, wherein the plasma level of said chimeric polypeptide reaches a trough of at least about 1 IU/dl after at least about 6 days in at least about 80% of a patient population or reaches a trough of at least about 1 IU/dl after at least about 6 days in said subject.
  5. 5
    The method of any of claims 1-3, wherein the plasma level of said chimeric polypeptide reaches an average trough of about 1-5 IU/dl in a patient population;or a trough of about 1-5 IU/dl in said subject.
  6. 6
    The method of any of claims 1-5, wherein less than 25% of the Factor IX chimeric polypeptide in said dose is fully phosphorylated and less than 25% of the Factor IX chimeric polypeptide in said dose is fully sulfated.
  7. 8
    The method of any of claims 1-7, wherein said dose has a mean incremental recovery (K-Value) (activity;observed) greater than 0.75 lU/dL per lU/kg .
  8. 10
    The method of any of claims 1-7, wherein said chimeric polypeptide exhibits one or more pharmacokinetic parameters, in said patient population or in said subject, selected from the group consisting of:a mean clearance (CL) (activity) in said patient population of about 3.36 ± 0.93 mL/hour/kg;a mean clearance (CL) (activity) in said patient population of about 3.0-3.72, 3.0, 3.1, 3.2, 3.3, 3.4, 3.5, 3.6, 3.7, or 3.72 mL/hour/kg;a mean clearance (CL) (activity) in said patient population that is about 2.5 fold lower than the clearance of a polypeptide comprising said Factor IX without said FcRn BP;a clearance (CL) (activity) in said subject of about 1.84-4.58 mL/hour/kg a mean mean residence time (MRT) (activity) in said patient population of at least about 68.05 ± 11.16 hours;a mean MRT (activity) in said patient population of about 60-78, 60, 62, 64, 66, 68, 70, 72, 74, 76, or 78 hours;a mean MRT (activity) in said patent population that is about 3 fold longer than the mean MRT of a polypeptide comprising said Factor IX without said FcRn BP;a mean residence time (MRT) (activity) in said subject of about 53.1-85.8 hours;a mean residence time (MRT) (activity) in said subject of at least about 45, about 50, about 55, about 60, about 65, about 70, about 75, about 80, about 85, or about 90 hours;a mean t!/2beta (activity) in said patient population of about 52.5 ± 9.2 hours;a mean t!/2beta (activity)in said patient population that is about 47-60 hours,, about 47, about 48, about 49, about 50, about 51, about 52, about 53, about 54, about 55, about 56, about 57, about 58, about 59, about 60 hours;a mean t!/2beta (activity) in said patient population that is about 3 fold longer than the mean t!/2beta of a polypeptide comprising said Factor IX without said FcRn BP;a t1/2beta (activity) in said subject of about 40-67.4, about 40, about 45, about 50, about 55, about 60, about 65, about 70, or about 75, hours;a mean incremental recovery (K value) (activity;observed) in said patient population of about 0.93 ± 0.18 lU/dL per lU/kg;a mean incremental recovery (K value) (activity;observed) in said patient population of about 0.85-1.15, about 0.85, about 0.86, about 0.87, about 0.88, about 0.89, about 0.90, about 0.91, about 0.92, about 0.93, about 0.94, about 0.95, about 0.96, about 0.97, about 0.98, about 0.99, about 1.0, about 1.05, about 1.10, or about 1.15 lU/dL per lU/kg;a mean incremental recovery (K value) (activity;observed) in said patient population that is about 24% better than the mean incremental recovery of a polypeptide comprising said Factor IX without said FcRN BP;an incremental recovery (K value) (activity;observed) in said subject of about 0.621.17 IU/dL per lU/kg;a mean Vss (activity) in said patient population of about 226 ± 67.76 mL/kg;a mean Vss (activity) in said patient population of about 200-300, about 200, about 210, about 220, about 230, about 240, about 250, about 260, about 270, about 280, about 290, or about 300 mL/kg;a Vss (activity) in said subject of about 145-365 mL/kg;a mean AUC/dose (activity) in said patient population of about 32.44 ± 10.75 IU*h/dL per lU/kg;a mean AUC/dose (activity) in said patient population of about 26-40, about 26, about 27, about 28, about 29, about 30, about 31, about 32, about 33, about 34, about 35, about 36, about 37, about 38, about 39, or about 40 IU*h/dL per lU/kg;an AUC/dose in said subject of about 21.80-54.30 IU*h/dL per lU/kg.
  9. 11
    The method of any of claims 1-10, wherein said dosing interval is 6-10 days.
  10. 17
    The method of any of claims 11-16, wherein said dosing interval is selected from the group consisting of about 7-10, about 7-9, and about 7-8 days.
  11. 18
    The method of any of claims 11-16, wherein said dosing interval is selected from the group consisting of about 8-10 and about 9-10 days.
  12. 19
    The method of any of claims 11-16, wherein said dosing interval is selected from the group consisting of about 6-7 and about 8-9 days.
  13. 20
    The method of any of claims 11-16, wherein said dosing interval is selected from the group consisting of about 6, about 7, about 8, about 9, and about 10 days.
  14. 24
    The method of any of claims 1-11, 22, and 23, wherein said dose is about 50 lU/kg, and said dosing interval is about 7 days.
  15. 25
    The method of any of claims 4-11, wherein said dose is about 50 lU/kg, said dosing interval is about 7 days, and said trough is reached in about 100% of said patient population.
  16. 26
    The method of any of claims 1-10, wherein said dosing interval is 9-18 days.
  17. 32
    The method of any of claims 26-31, wherein said dosing interval is selected from the group consisting of about 9-17, about 9-16, about 9-15, about 9-14, about 9-13, about 912, about 9-11, and about 9-10 days.
  18. 33
    The method of any of claims 26-31, wherein said dosing interval is selected from the group consisting of about 10-18, about 11-18, about 12-18, about 13-18, about 14-18, about 15-18, about 16-18, and about 17-18 days.
  19. 34
    The method of any of claims 26-31, wherein said dosing interval is selected from the group consisting of about 10-11, about 11-12, about 12-13, about 13-14, about 14-15, about 15-16, and about 16-17 days.
  20. 35
    The method of any of claims 26-31, wherein said dosing interval is selected from the group consisting of about 9, about 10, about 11, about 12, about 13, about 14, about 15, about 16, about 17, and about 18 days.
  21. 44
    The method of any of claims 1-43, wherein said subject is in need of control or prevention of bleeding or bleeding episodes.
  22. 46
    The method of any of claims 1-43, wherein said subject is in need of perioperative management.
  23. 51
    The method of any of claims 1-43, wherein said subject is in need of prophylactic treatment.
  24. 52
    The method of any of claims 1-43, wherein said subject is in need of on-demand treatment.
  25. 57
    The method of any of claims 1-56, wherein said subject is human.
  26. 58
    The method of any of claims 1-57, wherein said Factor IX in said chimeric polypeptide is a human Factor IX.
  27. 59
    The method of any of claims 1-58, wherein said Factor IX in said chimeric polypeptide is a mutant Factor IX.
  28. 60
    The method of any of claims 1-59, wherein said FcRn BP in said chimeric polypeptide is a human Fc.
  29. 61
    The method of any of claims 1-60, wherein said FcRn BP in chimeric polypeptide is a mutant Fc.
  30. 66
    The method of any of claims 1-65, wherein said chimeric polypeptide is in the form of a hybrid comprising a second polypeptide in association with said chimeric polypeptide, wherein said second polypeptide comprises a FcRn BP.
  31. 69
    The method of any of claims 66-68, wherein said second polypeptide comprises a sequence at least 90% or 95% identical to the amino acid sequence shown in Table 2B without a signal sequence (amino acids 1 to 227 of SEQ ID NO:4).
  32. 71
    The method of any of claims 1-70, wherein said patient is in need of long-term treatment at weekly or longer dosing intervals.
  33. 72
    The method of any of claims 1-71, wherein said chimeric polypeptide is administered as part of a pharmaceutical composition comprising at least one excipient.
  34. 73
    A polypeptide comprising a Factor IX at least 90% or 95% identical to a Factor IX amino acid sequence shown in Table 2A without a signal sequence and propeptide (amino acids 1 to 415 of SEQ ID NO:2), and a FcRn BP.
  35. 75
    A polypeptide comprising a Factor IX at least 90% or 95% identical to a Factor IX amino acid sequence shown in Table 2A with a signal sequence and propeptide and propeptide (amino acids -46 to 415 of SEQ ID NO:2), and a FcRn BP.
  36. 77
    The polypeptide of any of claims 73-65, wherein said FcRn BP is at least 90% or 95% identical to the Fc amino acid sequence shown in Table 2B (amino acids 1 to 227 of SEQ ID NO:4).
  37. 81
    The polypeptide of any of claims 73-80, which is in the form of a hybrid comprising a second polypeptide, wherein said second polypeptide comprises a FcRn BP.
  38. 84
    The polypeptide of any of claims 73-83, which has greatly reduced phosphorylation and sulfation in comparison to plasma derived Factor IX.
  39. 86
    The polypeptide of any of claims 73-85, which has a K value greater that 0.7 or 0.75.
  40. 88
    The polypeptide of any of claims 73-87, which exhibits one or more pharmacokinetic parameters, in said patient population or in said subject, selected from the group consisting of:a mean clearance (CL) (activity) in said patient population of about 3.36 ± 0.93 mL/hour/kg;a mean clearance (CL) (activity) in said patient population of about 3.0-3.72, 3.0, 3.1, 3.2, 3.3, 3.4, 3.5, 3.6, 3.7, or 3.72 mL/hour/kg;a mean clearance (CL) (activity) in said patient population that is about 2.5 fold lower than the clearance of a polypeptide comprising said Factor IX without said FcRn BP;a clearance (CL) (activity) in said subject of about 1.84-4.58 mL/hour/kg a mean mean residence time (MRT) (activity) in said patient population of at least about 68.05 ±11.16 hours;a mean MRT (activity) in said patient population of about 60-78, 60, 62, 64, 66, 68, 70, 72, 74, 76, or 78 hours;a mean MRT (activity) in said patent population that is about 3 fold longer than the mean MRT of a polypeptide comprising said Factor IX without said FcRn BP;a mean residence time (MRT) (activity) in said subject of about 53.1-85.8 hours;a mean residence time (MRT) (activity) in said subject of at least about 45, about 50, about 55, about 60, about 65, about 70, about 75, about 80, about 85, or about 90 hours;a mean t!/2beta (activity) in said patient population of about 52.5 ± 9.2 hours;a mean t!/2beta (activity)in said patient population that is about 4760־hours,, about 47, about 48, about 49, about 50, about 51, about 52, about 53, about 54, about 55, about 56, about 57, about 58. about 59, about 60 hours;a mean t!/2beta (activity) in said patient population that is about 3 fold longer than the mean t!/2beta of a polypeptide comprising said Factor IX without said FcRn BP;a t!/2beta (activity) in said subject of about 40-67.4, about 40, about 45, about 50, about 55, about 60, about 65, about 70, or about 75 hours;a mean incremental recovery (K value) (activity;observed) in said patient population of about 0.93 ±0.18 lU/dL per lU/kg;a mean incremental recovery (K value) (activity;observed) in said patient population of about 0.85-1.15, about 0.85, about 0.86, about 0.87, about 0.88, about 0.89, about 0.90, about 0.91, about 0.92, about 0.93, about 0.94, about 0.95, about 0.96, about 0.97, about 0.98, about 0.99, about 1.0, about 1.05, about 1.10, or about 1.15 lU/dL per lU/kg;a mean incremental recovery (K value) (activity;observed) in said patient population that is about 24% better than the mean incremental recovery of a polypeptide comprising said Factor IX without said FcRN BP;an incremental recovery (K value) (activity;observed) in said subject of about 0.621.17 lU/dL per lU/kg;a mean Vss (activity) in said patient population of about 226 ± 67.76 mL/kg;a mean Vss (activity) in said patient population of about 200-300, about 200, about 210, about 220, about 230, about 240, about 250, about 260, about 270, about 280, about 290, or about 300 mL/kg;a Vss (activity) in said subject of about 145-365 mL/kg;a mean AUC/dose (activity) in said patient population of about 32.44 ± 10.75 IU*h/dL per lU/kg;a mean AUC/dose (activity) in said patient population of about 26-40, about 26, about 27, about 28, about 29, about 30, about 31, about 32, about 33, about 34, about 35, about 36, about 37, about 38, about 39, or about 40 IU*h/dL per lU/kg;an AUC/dose in said subject of about 21.80-54.30 IU*h/dL per lU/kg.
  41. 89
    A polynucleotide encoding the polypeptide of any of claims 73-80.
  42. 90
    A polynucleotide encoding the Factor IX-FcRn BP polypeptide and the second peptide of any one of claims 81-88.
  43. 92
    The polynucleotide of any of claims 89-91, which is DNA or RNA.
  44. 93
    A cultured human embryonic cell comprising the polynucleotide of any one of claims 89-92.
  45. 99
    The hybrid protein of any of claims 96-98, which has a K value greater that 0.7 or 0.75.
  46. 101
    The method of any of claims 66-72, wherein said chimeric polypeptide is in the form of a hybrid, wherein said hybrid consists essentially of a single chain of said chimeric polypeptide and a single chain of said second polypeptide, and wherein said chains are associated through (a) noncovalent interactions, (b) two disulfide bonds or (c) both (a) and (b).
  47. 102
    The polypeptide of any of claims 81-88 and 96-100, wherein said chimeric polypeptide is in the form of a hybrid, wherein said hybrid consists essentially of a single chain of said chimeric polypeptide and a single chain of said second polypeptide, and wherein said chains are associated through (a) noncovalent interactions, (b) two disulfide bonds or (c) both (a) and (b).
  48. 103
    A recombinant factor IX (rFIX) preparation, which has an incremental recovery (K-Value) in humans greater than 0.75 JU/dL per lU/kg and wherein less than 25% of the rFIX in the preparation is fully phosphorylated and sulfated.
  49. 108
    The method of any of claims 1-10, wherein said dose is 10-50, 10-30, 20-50, 20-100, 10, or 20 lU/kg and said dosing interval is one time weekly.
  50. 109
    The method of any of claims 1-10, wherein said dose is 15-50 or 40 lU/kg and said dosing interval is every 10 days.
  51. 110
    The method of any of claims 1-10, wherein said dose is 100 lU/kg and said dosing interval is every two weeks or twice monthly.
  52. 111
    The method of any of claims 1-10, wherein said dosing interval is one time weekly.
  53. 112
    The method of any of claims 1-10, wherein said dose is 15-100 lU/kg and said dosing interval is 10-13 days.
  54. 113
    The method of any of claims 1-10, wherein said dose 50-100 lU/kg and said dosing interval is 10-14 days, said dose is 50-150 lU/kg and said dosing interval is 1415 days, or said dose is 100-150 lU/kg and said dosing interval is 14-16 days.
  55. 114
    The method of any of claims 1-10, wherein said dose is 15-50 lU/kg and said dosing interval is 10 days, said dose is 20-70 lU/kg and said dosing interval is 11 days, said dose is 25-85 lU/kg and said dosing interval is 12 days, said dose is 30-100 lU/kg and said dosing interval is 13 days, said dose is 40-125 lU/kg and said dosing interval is 14 days, or said dose is 50-150 lU/kg and said dosing interval is 15 days.
  56. 115
    The method of any of claims 1-10, which consists of a one time weekly prophylactic dosing interval.
  57. 116
    The method of any of claims 1-10, which consists of a 10-14 day prophylactic dosing interval.
  58. 117
    The method of any of claims 1-10, which consists of a 15-18 or 16-18 day prophylactic dosing interval.
  59. 118
    The method of any of claims 1-10, which consists of a two times monthly prophylactic dosing interval.
  60. 119
    The method of any of claims 1-10, which consists of a one time monthly prophylactic dosing interval.
  61. 120
    The method of any of claims 1-10, which is a fixed or individualized prophylactic dose and/or dosing interval.
  62. 121
    The method of any of claims 1-10, wherein said dose is administered intravenously or subcutaneously.
Independent claims62