Nova Patents
EP4372000A2

Masked il12 protein

Abstract

Disclosed herein are masked IL12 proteins that can be activated both in vitro and in vivo. Surprisingly, a small, bioorthogonal group is sufficient to deactivate or mask the IL12 protein, which can thereafter be activated by contacting the masked IL12 protein with the bioorthogonal reactive partner of the Trigger joining the IL12 protein to the mask (either a dienophile or a diene). The invention also relates to methods for using and preparing said masked IL12 proteins.

EP4372000A2, drawing sheet 1
Sheet 1 of 184

Term

16.4 yearsto projected expiry

Projected expiry 15 February 2043, counted from filing; an application has no term until it is granted.

  1. Priority and filed
  2. Published
  3. Today
  4. Projected expiry

15 claims: 6 independent, 9 dependent

  1. 1
    A masked IL12 protein, or a masked subunit thereof, or a salt, hydrate, or solvate of said masked IL12 protein or said masked subunit; wherein at least one lysine residue of the masked IL12 protein or the masked subunit has a structure according to Formula (1):wherein the wiggly lines indicate bonds to other amino acid residues of the masked IL12 protein or the masked subunit;wherein the Trigger is a dienophile or a tetrazine;the dienophile or the tetrazine is linked to the ε-amine of the lysine residue of Formula (1) via a bond C A ;the dienophile comprises an eight-membered non-aromatic cyclic mono-alkenylene moiety comprising at least one allylic carbon, preferably two allylic carbons, and optionally comprising one or more heteroatoms;the at least one allylic carbon is (a) directly linked to the ε-amine of the lysine residue via a moiety M R selected from the group consisting of -OC(O)-, -OC(S)-, -SC(O)-, and -SC(S)-, forming a carbamate, thiocarbamate or dithiocarbamate moiety together with said ε-amine and C A ;preferably M R is -OC(O)-;or (b) directly linked to a first end of a self-immolative linker via a cleavable moiety M B selected from the group consisting of carbamate, thiocarbamate, carbonate, thiocarbonate, ether, ester, amine, amide, thioether, thioester, sulfoxide, and sulfonamide;and a second end of the self-immolative linker is directly linked to the ε-amine of the lysine residue via a moiety M R that is part of the self-immolative linker, forming a carbamate, thiocarbamate or dithiocarbamate moiety together with said ε-amine and C A ;wherein the tetrazine is according to Formula (2): Formula (2);wherein X S is an optionally substituted carbon atom;wherein X T is -A T -(B T ) b -X C -C(C T )-(L C ) f -C A ;A T and B T are each independently are selected from the group consisting of an optionally substituted carbon atom, an optionally substituted nitrogen atom, O, S, S(=O), and S(=O) 2 ;optionally the bond between A T and B T is a double bond;b is 0 or 1;when b is 0, A T is an optionally substituted carbon atom;when b is 1, B T is an optionally substituted carbon atom;X C is O, S, or an optionally substituted nitrogen atom;C T is O or S;f is 0 or 1;L C is a self-immolative linker;when f is 1, L C is directly linked to C(C T ) via a moiety selected from the group consisting of O, S, a secondary amine, and a tertiary amine, wherein said moiety is part of L C , and L C is directly linked to the ε-amine of the lysine residue via a moiety M R that is part of L C , forming a carbamate, thiocarbamate or dithiocarbamate moiety together with said ε-amine and C A ;wherein optionally said dienophile or tetrazine comprises at least one C B , wherein C B is an organic molecule or an inorganic molecule.
  2. 3
    The masked IL12 protein or masked subunit according any one of the preceding claims, wherein the masked IL12 protein comprises a masked p35 subunit and/or a masked p40 subunit; wherein the masked p35 subunit has a sequence similarity of at least 80% with an amino acid sequence of SEQ ID NO:1 or SEQ ID NO: 14;and wherein the masked p40 subunit has a sequence similarity of at least 80% with an amino acid sequence selected from the group consisting of SEQ ID NO: 2, SEQ ID NO: 3, SEQ ID NO: 4, SEQ ID NO: 5, SEQ ID NO: 6, SEQ ID NO: 7, SEQ ID NO: 8, SEQ ID NO: 9, SEQ ID NO: 10, SEQ ID NO: 11, SEQ ID NO: 12, and SEQ ID NO: 13.
  3. 4
    The masked IL12 protein or masked subunit according any one of the preceding claims, wherein for the masked p35 subunit the at least one lysine residue having the structure according to Formula (1) is selected from the group consisting of K122, K128, K168, and K170, wherein said numbers refer to the amino acid residues of SEQ ID NO:1 or equivalent positions thereof in SEQ ID NO:14;and/or wherein for the masked p40 subunit the at least one lysine residue having the structure according to Formula (1) is selected from the group consisting of K58, K195, and K197, wherein said numbers refer to the amino acid residues of SEQ ID NO: 2 or equivalent positions thereof in any one of SEQ ID NO: 3 up to and including SEQ ID NO: 13.
  4. 5
    The masked IL12 protein or masked subunit according any one of the preceding claims, wherein the dienophile and/or the tetrazine comprises at least one C B , and wherein preferably each C B is independently selected from the group consisting of polymer, peptide, protein, peptoid, amino acid, oligonucleotide, nucleic acid, nucleotide, carbohydrate, and combinations thereof;more preferably C B comprises a polymer, most preferably polyethylene glycol.
  5. 6
    The masked IL12 protein or masked subunit according any one of the preceding claims, wherein the dienophile is according to Formula (3b):wherein X 6 is -CHR 48 ;R 48 is -M R -C A or -M B -L C -C A ;L C is a self-immolative linker directly linked via a group M R , that is part of L C , and the bond C A to the ε-amine of the at least one lysine residue of Formula (1), and wherein optionally L C is linked to one or more groups -(S P ) i -C B and/or one or more groups -(S P ) i -D D with i being an integer in a range of from 0 to 4, preferably i is 1;the optional at least one C B , if present, is linked, directly or via a spacer S P , to a moiety selected from the group consisting of X 1 , X 2 , X 3 , X 4 , X 5 , and L C ;wherein if C B is linked, directly or via a spacer S P , to a moiety selected from the group consisting of X 1 , X 2 , X 3 , X 4 , and X 5 , C B or -S P -C B is considered to be R 47 ;X 5 is -C(R 47 ) 2 - or -CHR 49 , preferably X 5 is -C(R 47 ) 2 -;each of X 1 , X 2 , X 3 , and X 4 is independently selected from the group consisting of -C(R 47 ) 2 -, -NR 37 -, -C(O)-, and -O-, such that at most two of X 1 , X 2 , X 3 , X 4 are not -C(R 47 ) 2 -, and with the proviso that no sets consisting of adjacent atoms are present selected from the group consisting of -O-O-, -O-N-, -C(O)-O-, N-N-, and -C(O)-C(O)-;each of C B , R 47 and R 37 are independently selected from the group consisting of hydrogen, organic molecules, and inorganic molecules;R 49 is selected from the group consisting of -M R -C B , -M B -L C -C B ;-M R - D D , and - M B -L C -D D ;and D D is a drug.
  6. 7
    A combination comprising the masked IL12 protein or masked subunit according to any one of the preceding claims, wherein (a) if the Trigger is a dienophile, the combination further comprises a diene, preferably a tetrazine;or (b) if the Trigger is a tetrazine, the combination further comprises a dienophile, preferably a dienophile comprising an eight-membered non-aromatic cyclic mono-alkenylene moiety, and optionally comprising one or more heteroatoms.
  7. 10
    The masked IL12 protein according to any one of claims 1 to 6, or the combination according to any one of claims 7 to 9 for use as a medicament.
  8. 11
    The masked IL12 protein according to any one of claims 1 to 6, or the combination according to any one of claims 7 to 9 for use in the treatment of a disease in a subject, preferably a human, wherein the disease is selected from the group consisting of cancer, central nervous system (CNS) diseases, infection, inflammation, rheumatoid arthritis, cardiovascular diseases, psoriasis, and inflammatory bowel disease.
  9. 12
    A method for preparing a masked IL12 protein or masked subunit according to any one of claims 1 to 6, wherein said method comprises the step of:(a1) contacting an activated dienophile or a salt, solvate, or hydrate thereof, with an IL12 protein or a subunit thereof;or (a2) contacting an activated tetrazine or a salt, solvate, or hydrate thereof, with an IL12 protein or a subunit thereof;wherein the IL12 protein comprises a p35 subunit and a p40 subunit;wherein the activated dienophile comprises an eight-membered non-aromatic cyclic mono-alkenylene moiety comprising at least one allylic carbon, preferably two allylic carbons, and optionally comprising one or more heteroatoms;the at least one allylic carbon is directly linked to a moiety -M R -R R or -M B -L C -R R ;M R , M B , and L C are as defined in any one of claims 1 to 5;wherein L C comprises a moiety M R that is directly linked to the R R moiety;R R is selected from the group consisting of -OH, -Cl, -F, -O-N-succinimidyl, -O-4-nitrophenyl, -O-tetrafluorophenyl, and -O-pentafluorophenyl;wherein optionally said activated dienophile comprises at least one C B as defined in any one of claims 1 to 6;wherein the activated tetrazine is according to Formula (2a): wherein X S is an optionally substituted carbon atom;wherein X TA is -A T -(B T ) b -X C -C(C T )-(L C ) f -R R ;wherein A T , B T , b, X C , C T , L C , and f are as defined in any one of claims 1 to 5;wherein optionally said activated tetrazine comprises at least one C B as defined in any one of claims 1 to 6;wherein preferably the p35 subunit has a sequence similarity of at least 80% with an amino acid sequence of SEQ ID NO: 1 or SEQ ID NO: 14;and wherein preferably the p40 subunit has a sequence similarity of at least 80% with an amino acid sequence selected from the group consisting of SEQ ID NO: 2, SEQ ID NO: 3, SEQ ID NO: 4, SEQ ID NO: 5, SEQ ID NO: 6, SEQ ID NO: 7, SEQ ID NO: 8, SEQ ID NO: 9, SEQ ID NO: 10, SEQ ID NO: 11, SEQ ID NO: 12, and SEQ ID NO: 13.
  10. 15
    A non-therapeutic method for imaging the masked IL12 protein or masked subunit according to any one of claims 1 to 6, in a subject, preferably a human, said non-therapeutic method comprising the steps of (a) administering the masked IL12 protein according to any one of claims 1 to 6 comprising a label, to the subject;and (b) imaging said masked IL12 protein present in the subject;wherein the label is selected from the group consisting of radionuclides, fluorescent dyes, and phosphorescent dyes.