Plenylacetate and derivatives alone or in combination with other compounds against neoplastic conditions and other disorders

1

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FIELD OF THE INVENTION

0001This invention relates to methods of using phenylacetic acid and its pharmaceutically acceptable derivatives to treat and prevent pathologies and to modulate cellular activities. In particular, this invention relates to A) use of phenylacetic acid and it derivatives in treatment or prevention of cancer, B) use of phenylacetic acid and its derivatives in wound healing, C) use of phenylacetic acid and its derivatives in treatment of diseases associated with interleukin-6, D) use of phenylacetic acid and its derivatives in the treatment of AIDS-associated CNS dysfunction, E) use of phenylacetic acid and its derivatives to enhance immunosurveillance, F) methods of monitoring the dosage level of phenylacetic acid and its derivatives in a patient and/or the patient response to these drugs, G) the activation of the PPAR by phenylacetic acid and its derivatives, the use of phenylacetic acid and its derivatives in combination with agents that interact with retinoid receptors and the use of phenylacetic acid and its derivatives as free radical-based radiation or chemotherapy sensitization or protective agents, H) use of phenylacetic acid and its derivatives in treatment of cancers having a multiple-drug resistant phenotype, I) phenylacetic acid and its derivatives, correlation between potency and lipophilicity, J) phenylacetic acid and its derivatives in synergistic combination with retinoic acid for the treatment and prevention of cancers such as those involving neuroblastoma cells, K) phenylacetic acid and its derivatives in synergistic combination with lovastatin for the treatment and prevention of cancers such as malignant gliomas or other CNS tumors, L) phenylacetic acid and its derivatives for the treament and prevention of cancers and other differentiation disorders such as those involving malignant melanoma or other neuroectodermal tumors, M) phenylacetic acid and its derivatives in synergistic combination with hydroxyurea (HU) for the treatment and prevention of cancers such as prostate cancer, N) phenylacetic acid and its derivatives for the treatment and prevention of cancers involving medulloblastoma and astrocytoma derived cells, O) phenylacetic acid and its derivatives in human studies relating to treatments with PA and PB, P) phenylacetic acid and its derivatives in methods of altering lipid metabolism, including reducing serum triglyerides, Q) induction of HbF by phenylacetic acid and its derivatives in malignant and nonmalignant cells, and R) methods of administering phenylacetic acid and its derivatives.

II.

BACKGROUND OF THE INVENTION

0002Phenylacetic acid (PAA) is a protein decomposition product found throughout the phylogenetic spectrum, ranging from bacteria to man. Highly conserved in evolution, PAA may play a fundamental role in growth control and differentiation. In plants, PAA serves as a growth hormone (auxin) promoting cell proliferation and enlargement at low doses (10^-5-10^-7 M), while inhibiting growth at higher concentrations. The effect on animal and human cells is less well characterized. In humans, PAA is known to conjugate glutamine with subsequent renal excretion of phenytacetylglutamine (PAG). The latter, leading to waste nitrogen excretion, has been the basis for using PAA or preferably its salt sodium phenylacetate (NaPA, also referenced herein as that active anionic meoity, phenylacetate or "PA") in the treatment of hyperammonemia associated with inborn errors of ureagenesis. Clinical experience indicates that acute or long-term treatment with high NaPA doses is well tolerated, essentially free of adverse effects, and effective in removing excess glutamine. [Brusilow, S.W., Horwich, A.L. Urea cycle enzymes. Metabolic Basis of Inherited Diseases, Vol. 6:629-633 (1989)].

0003Glutamine is the major nitrogen source for nucleic acid and protein synthesis, and a substrate for energy in rapidly dividing normal and tumor cells. Compared with normal tissues, most tumors, due to decreased synthesis of glutamine along with accelerated utilization and catabolism, operate at limiting levels of glutamine availability, and consequently are sensitive to further glutamine depletion. Considering the imbalance in glutamine metabolism in tumor cells and the ability of PAA to remove glutamine, PAA has been proposed as a potential antitumor agent; however, no data has previously been provided to substantiate this proposal. [Neish, W.J.P. "Phenylacetic Acid as a Potential Therapeutic Agent for the Treatment of Human Cancer", <u>Experentia</u>, Vol. 27, pp. 860-861 (1971)].

0004Despite these efforts to fight cancer, many malignant diseases that are of interest in this application continue to present major challenges to clinical oncology. Prostate cancer, for example, is the second most common cause of cancer deaths in men. Current treatment protocols rely primarily on hormonal manipulations. However, in spite of initial high response rates, patients often develop hormone-refractory tumors, leading to rapid disease progression with poor prognosis. Overall, the results of cytotoxic chemotherapy have been disappointing, indicating a long felt need for new approaches to treatment of advanced prostatic cancer. Other diseases resulting from abnormal cell replication, for example metastatic melanomas, brain tumors of glial origin (e.g., astrocytomas), and lung adenocarcinoma, are also highly aggressive malignancies with poor prognosis. The incidence of melanoma and lung adenocarcinoma has been increasing significantly in recent years. Surgical treatments of brain tumors often fail to remove all tumor tissues, resulting in recurrences. Systemic chemotherapy is hindered by blood barriers. Therefore, there is an urgent need for new approaches to the treatment of human malignancies including advanced prostatic cancer, melanoma, and brain tumors.

0005In addition to its ability to bind gluatamine to form glutamine phenylacetate, phenylacetic acid (PAA) can induce tumor cells to undergo differentiation. PAA is a nontoxic differentiation enhancer and has antitumor activity in laboratory models and in man. Preclinical studies indicate that phenylacetate and related aromatic fatty acids induce cytostasis and promote maturation of various human malignant cells, including hormone-refractory prostatic carcinoma and glioblastoma. The marked changes in tumor biology are associated with alterations in the expression of genes implicated in tumor growth, invasion, angiogenesis, and immunogenicity. PAA and its analogs appear to share several mechanisms of action, including : (a) regulation of gene expression through activation of a nuclear receptor, and (b) inhibition of the mevalonate pathway and protein isoprenylation. Thus, PAA appears particulary suited in the treatment of various neoplastic conditions.

0006One such neoplastic condition treatable by NaPA is neuroblastoma. As a malignant tumor of childhood, neuroblastoma has proven to be fascinating from a biological as well as clinical veiwpoint. This cancer has the highest rate of spontaneous differentiation of all malignancies and several agents have been reported to induce maturation of neuroblastoma into a variety of cells sharing a neural-crest lineage (Evans, AE., Chatten, J., D'Angio, G.J., Gerson, J.M., Robinson, J., and Schnaufer, L. A review of 17 IV-S neuroblastoma patients at the Children's Hospital of Philadelphia. <i>Cancer,</i> 45:833-939, 1980; Abemayor, E., and Sidell, N. Human neuroblastoma cell lines as models for the <i>in vitro</i> study of neoplastic an neuronal cell differentiation. <i>Environ. Health Perspect.,</i> 80:3-15, 1989). Among the compounds that have been explored as differentiating agents, retinoic acid (RA) (Sidell, N., Altman, A., Haussler, M.R, and Seeger, RC. Effects of retinoic acid (RA) on the growth and phenotypic expression of several human neuroblastoma cell lines. <i>Expl. Cell Res.,</i> 148:21-30, 1983) was shown to be a potent compound for promoting the differentiation of a variety of human neuroblastoma cell lines (Abemayor, E., and Sidell, N. Human neuroblastoma cell lines as models for the <i>in vitro</i> study of neoplastic an neuronal cell differentiation. <i>Environ. Health Perspect.,</i> 80:3-15, 1989; Sidell, N., Altman, A, Haussler, M.R, and Seeger, R.C. Effects of retinoic acid (RA) on the growth and phenotypic expression of several human neuroblastoma cell lines. <i>Expl</i>. <i>Cell Res</i>., <b>148</b>:21-30, 1983; Thiele, C.T., Reynolds, C.P., and Israel, M.A. Decreased expression of N-<i>myc</i> precedes retinoic acid-induced morphological differentiation of human neuroblastoma. <i>Nature</i>, <b>313</b>:404-406, 1985); however, to date RA has demonstrated only limited clinical effectiveness in this disease (Finklestein, J.Z., Krailo, M.D., Lenarsky, C., Ladisch, S., Blair, G.K., Reynolds, C.P., Sitary, A.L., and Hammond, G.D., 13-cis-retinoic acid (NSC 122758) in the treatment of children with metastatic neuroblastoma unresponsive to conventional chemotherapy: Report from the Children's Cancer Study Group. <i>Med. Ped. Oncol.,</i> 20:307-311, 1992). In pursuit of increasing the efficacy of RA-induced differentiation of human neuroblastoma, a number of other compounds and biological response modifiers, such as cAMP-elevating agents and interferons, can potentiate the retinoid activity as well as render resistant populations sensitive to RA treatment (Lando, M., Abemayor, E., Verity, M.A, and Sidell, N. Modulation of intracellular cyclic AMP levels and the differentiation response of human neuroblastoma cells. <i>Cancer Res.,</i> 50:722-727, 1990; Wuarin, L., Verity, M.A, and Sidell, N. Effects of gamma-interferon and its interaction with retinoic acid on human neuroblastoma cells. <i>Int. J. Cancer</i>, <b>48</b>:136-144, 1991). Some of these combination treatments are now being evaluated clinically or proposed for the treatment of neuroblastoma and other malignancies (Smith, M.A., Parkinson, D.R., Cheson, B.D., and Friedman, M.A. Retinoids in cancer therapy. <i>J Clin. Oncol,</i> 10:839-864, 1992). However, there exists a need for more effective combination treatments for the treatment of neuroblastoma and other similar cancers and pathologies.

0007Another neoplastic condition which heretofore has been difficult to treat is malignant glioma. Malignant gliomas are highly dependent on the mevalonate (MVA) pathway for the synthesis of sterols and isoprenoids critical to cell replication (Fumagalli, R., Grossi, E., Paoletti, P. and Paolette, R Studies on lipids in brain tumors. I. Occurrence and significance of sterol precursors of cholesterol in human brain tumors. <i>J. Neurochem.</i><b>11</b>:561-565, 1964; Kandutsch, A.A. and Saucier, S.E. Regulation of sterol synthesis in developing brains of normal and jimpy mice. <i>Arch. Biochem. Biophys.</i><b>135</b>:201-208, 1969; Grossi, E., Paoletti, P. and Paoletti, R. An analysis of brain cholesterol and fatty acid biosynthesis. <i>Arch. Int. Physiol. Biochem.</i> 66:564-572, 1958; Azarnoff, D.L., Curran, G.L. and Williamson, W.P. Incorporation of acetate-1-¹⁴C into cholesterol by human intracranial tumors <i>in vitro. J. Nat. Cancer Inst.</i><b>21</b>:1109-1115, 1958; Rudling, M.J., Angedin, B., Peterson, C.O. and Collins, V.P. Low density lipoprotein receptor activity in human intracranial tumors and its relation to cholesterol requirement. <i>Cancer Res.</i><b>50 (suppl)</b>:483-487, 1990). Targeting MVA synthesis and/or utilization would be expected to inhibit tumor growth without damaging normal brain tissues, in which the MVA pathway is minimally active. Two enzymes control the rate limiting steps of the MVA pathway of cholesterol synthesis: (a) 3-hydroxy-3-methylglutaryl coenzyme A (HMG-CoA) reductase catalyzes the synthesis of MVA from acetyl-CoA; and, (b) MVA-pyrophosphate (MVA-PP) decarboxylase controls MVA utilization and, consequently, the post-translational processing and function of intracellular signalling proteins (Goldstein, J.L. and Brown, M.S. Regulation of the mevalonate pathway. <i>Nature.</i><b>343</b>:425-430, 1990; Minhall, C.J. Protein prenylation: A mediator of protein-protein interactions. <i>Science.</i><b>259</b>:1865-1866, 1993). Therefore, it is highly desirable for the treatment of malignant gliomas or other similar cancers and pathologies to find a treatment capable of inhibiting these two steps of the MVA pathway.

0008A further neoplastic condition which has been difficult to treat is malignant melanoma. Disseminated malignant melanoma is characterized by a high mortality rate and resistance to conventional therapies (Ferdy Lejeune, Jean Bauer, Serge Leyvraz, Danielle Lienard (1993): Disseminated melanoma, preclinical therapeutic studies, clinical trial, and patient treatment. <i>Current Opinion in Oncology</i><b>5</b>:390-396). Differentiation therapy may provide an alternative for treatment of cancers that do not or poorly respond to cytotoxic chemotherapy (Kelloff, G.J., Boone, C.W., Malone, E.F., Steele, V.E. (1992): Chemoprevention clinical trials. <i>Mutation Res.</i><b>267</b>:291-295). Several differentiation inducers are capable of altering the phenotype of melanoma cells <i>in vitro.</i> These include retinoids, butyrate, dibutyryl adenosine 3':5'-cyclic monophosphate (dbc AMP), 5-Azacytidine, interferons, hexamethylene bisacetamide (HMBA), dimethyl formamide (DMF), dimethyl sulfoxide (DMSO), 12-tetradecanoylphorbol-13 acetate (TPA) (Mary J. Hendrix, Rebecca W. Wood, et al. (1990): Retinoic acid inhibition of human melanoma cell invasion through a reconstituted basement membrane and its relation to decreases in the expression of proteolytic enzymes and motility. <i>Cancer Research</i> 50:4121-4130; Luara Giffre, Magali Schreyer, Jean-pierre Mach, Stefan Carrel (1988): Cyclic AMP induces differentiation <i>in vitro</i> of human melanoma cells. <i>Cancer</i> 61:1132-1141; Jardena Nordenberg, Lina Wasserman, Einat Beery, Doron Aloni, Hagit Malik, Kurt H. Stenzel, Abraham Novogrodsky (1986): Growth inhibition of murine melanoma by butyric acid and dimethylsulfoxide. <i>Experimental Cell Research</i> 162:77-85; Eliezer Huberman, Carol Heckman, Rober Langenbach (1979): Stimulation of differentiation functions in human melanoma cells by tumor-promoting agents and dimethyl sulfoxide. <i>Cancer Research</i> 39:2618-2624; Claus Garbe, Konstantin Krasagakis (1993): Effects of interferons and cytokines on melanoma cells. <i>J. Invest. Dermatol.</i> 100:239S-244S). Unfortunately, clinical applications of these agents are limited by unacceptable toxicities, concern regarding potential carcinogensis, or an inability to achieve and sustain effective plasma concentrations. Therefore, there exists a need for a nontoxic, clinically effective treatments for malignant melanomas or other similar cancers, pathologies or differentiation disorders.

0009Hydroxyurea, a ribonucleotide reductase inhibitor, is a simple chemical compound (CH₄N₂O₂, MW 76.05) that was initially synthesized in the late 1800's (Calabresi P, Chabner BA. Antineoplastic Agents. In: Gilman AG, Rall TW, Nies AS, Taylor P, eds. <i>The Pharmacological Basis of Therapeutics.</i> New York: McGraw Hill 1990:1251-2). It was later found to produce leukopenia in laboratory animals and subsequently was tested as an antineoplastic agent (Rosenthal F, Wislicki L, Kollek L. Ueber die beziehungen von schwersten blutgiften zu abbauprodukten des ewweisses. Beitrag zum entstehungsmechanismus der perniziosen. <i>Anamie. Klin. Wschr.</i> 1928;7:972). At present, the primary clinical role of hydroxyurea is in the treatment of myeloproliferative disorders. It is now considered the preferred initial therapy for chronic myelogenous leukemia (Donehower RC. Hydroxyurea. In: Chabner BA, Collins JM, eds <i>Cancer Chemotherapy, Principles and Practice,</i> Philadelphia: JB Lippincott 1990:225-33).

0010Hydroxyurea has been evaluated in a number of solid tumors, including: malignant melanoma, squamous cell carcinoma of the head and neck, renal cell carcinoma, and transitional cell carcinoma of the urothelium (Bloedow CE. A phase II study of hydroxyurea in adults: miscellaneous tumors. <i>Cancer Chemoother Rep</i> 1964;40-39-41; Ariel IM. Therapeutic effects of hydroxyurea: experience with 118 patients with inoperable tumors. <i>Cancer</i> 1970;25:714; Nevinny H, Hall TC. Chemotherapy with hydroxyurea in renal cell carcinoma. <i>J Clin Pharmacol</i> 1968;88:352-9; Beckloff GL, Lerner HJ, Cole DR, et al. Hydroxyurea in bladder carcinoma. <i>Invest Urol</i> 1967;6:530-4). Initial studies appeared promising in several of these diseases, but further investigation has not defined a role for hydroxyurea in any of the standard therapy regimens for solid tumors.

0011Inasmuch as hydroxyurea is an S-phase cell cycle specific agent, it is surprising that several clinical trials of this drug in hormone-refractory metastatic prostate cancer suggested that it possessed some activity (Lerner HJ, Malloy TR. Hydroxyurea in stage D carcinoma of prostate. <i>Urol</i> 1977;10,35-8; Kvols LK, Eagan RT, Myers RP. Evaluation of melphalan, ICRF-159, and hydroxyurea in metastatic prostate cancer: a preliminary report. <i>Cancer Treat Rep</i> 1977;61:311-2; Loening SA, Scott WW, deKernion J, et al. A Comparison of hydroxyurea, methyl-chloroethyl-cyclohexy-nitrosourea and clylophospliamide in patients with advance carcinoma of the prostate. <i>J Urol</i> 1981;125:812-6; Mundy AR. A pilot study of hydroxyurea in hormone "escaped" metastatic carcinoma of the prostate. <i>Br J Urol</i> 1982;54:20-5; Stephens RL, Vaughn C, Lane M, et al. Adriamycin and cyclophosphamide versus hydroxyurea in advanced prostatic cancer. <i>Cancer</i> 1984,53:406-10) particularty given (1) the slowly progressive nature of the disease and (2) the schedules of drug administration used in these trials, e.g., once daily to once every three days. It seemed unlikely that either the doses or schedules of hydroxyurea administration used in these trials would capture a significant proportion of tumor cells in a susceptible phase of the cell cycle. Table 13 summarizes the reported clinical data regarding hydroxyurea's activity in hormone-refractory prostate cancer. The overall objective response rate is 23% and the frequency of subjective improvement is 36% (Lerner HJ, Malloy TR. Hydroxyurea in stage D carcinoma of prostate. <i>Urol</i> 1977;10,35-8; Kvols LK, Eagan RT, Myers RP. Evaluation of melphalan, ICRF-159, and hydroxyurea in matastatic prostate cancer: a preliminary report. <i>Cancer Treat Rep</i> 1977;61:311-2; Loening SA, Scott WW, deKernion J, et al. A Comparison of hydroxyurea, methyl-chloroethyl-cyclohexy-nitrosourea and clylophosphamide in patients with advance carcinoma of the prostate. <i>J Urol</i> 1981; 125:812-6; Mundy AR. A pilot study of hydroxyurea in hormone "escaped" metastatic carcinoma of the prostate. <i>Br J Urol</i> 1982;54:20-5; Stephens RL, Vaughn C, Lane M, et al. Adriamycin and cyclophosphamide versus hydroxyurea in advanced prostatic cancer. <i>Cancer</i> 1984;53:406-10). Thus, there exists a need for an improved therapy using hydroxyurea for treatment of prostatic or similar cancers.

0012Treatment for most primary central nervous system (CNS) tumors has been, to date, unsatisfactory. Chemotherapy, radiation therapy, and surgery are primarily cytoreductive, aiming to reduce the number of viable tumor cells in the host. While the application of these techniques has been successful in some human malignancies, the use of cytoreductive strategies for medulloblastoma and malignant astrocytoma has had limited success because of inaccessibility of the primary tumor, early dissemination of the malignant cells into the cerebrospinal fluid, lack of effective cytoreductive agents or unacceptable toxicity. Thus, there exists a need for satisfactory treamtents for CNS tumors which overcome the prior drawbacks of conventional cytoreductive therapy.

0013In addition, the link between problems with lipid metabolism and heart disease is now well-accepted. Thus, it is desirable to find treatment capable of modulating or altering lipid metabolism in subjects with related maladies. In particular treatments and methods for reducing serum triglycerides are highly desirable.

0014While radiation therapy has been widely used in the management of neoplastic disease, it is limited by the lack of radiosensitivity of specific regions of malignant tumors. Chemical enhancement of tumor sensitivity to radiation has largely been unsuccessful and remains a critical problem in radiotherapy. Thus, there exists a need for improved methods involving radiotherapy.

0015Accordingly, the present invention provides methods and compositions for treating the above-mentioned and other pathologies with PAA and its pharmaceutically acceptable salts, derivatives, and analogs.

III.

SUMMARY OF THE INVENTION

0016The invention provides a method of treating various pathologies in a subject. The invention also provides for the modulation of various cellular activities in a subject. The present invention provides a method of treating various disorders, including neoplastic conditions, in a subject comprising administering a therapeutic amount of a phenylacetic acid derivative of the formula: <chemistry id="chem0001" num="0001"><img file="EP1523982A2_D0001.tif" /></chemistry>    ; wherein    R₀ = aryl, phenoxy, substituted aryl or substituted phenoxy;    R₁ and R₂ = H, lower alkoxy, lower straight and branched chain alkyl or halogen;    R₃ and R₄ = H, lower alkoxy, lower straight and branched chain alkyl or halogen; and    n = an integer from 0 to 2; salts thereof; stereoisomers thereof; and mixtures thereof. This general structure is hereinbelow referred to as <b><u>General Structure A</u></b> without reference to any particular method or composition. The neoplastic conditions treatable by this method include neuroblastoma, acute promyelocytic leukemia, acute myelodisplasia, acute glioma, prostate cancer, breast cancer, melanoma, non-small cell lung cancer, medulloblastoma, lung carcinoma, astrocytoma, and Burkitt's lymphoma as well as other conditions. The compounds for the above method (as disclosed in <u><b>General Structure A</b></u>), and for any of the methods and compositions disclosed herein, specifically include sodium phenylacetate and sodium phenylbutyrate.

0017Further provided is a method of preventing a neoplastic condition in a subject comprising administering a prophylactic amount of a phenylacetic acid derivative of <b><u>General Structure A</u>.</b> This method also encompasses a method where the compound is administered in combination with an anti-neoplastic agent. The present invention also provides a method of inducing the differentiation of a cell comprising administering to the cell a differentiation inducing amount of a phenylacetic acid derivative of <b><u>General Structure A.</u></b>

0018Also included is a method of inducing the production of fetal hemoglobin in a subject comprising administering to the subject a fetal hemoglobin inducing amount of a phenylacetic acid derivative of <b><u>General Structure A.</u></b>

0019The present invention includes a method of treating a pathology associated with abnormal hemoglobin activity in a subject comprising administering to the subject a therapeutic amount of a phenylacetic acid derivative of <b><u>General Structure A.</u></b> This method may be used to treat a pathology which is anemia. More specifically, the anemia may be selected from the group consisting of sickle cell and beta thalassemia.

0020In another embodiment, the present invention provides a method of inhibiting the production of IL-6 in a cell comprising contacting the cell with an IL-6 inhibiting amount of a phenylacetic acid derivative of <b><u>General Structure A</u>.</b> This method of inhibiting may be used in a subject having any of the following pathologies: rheumatoid arthritis, Castleman's disease, mesangial proliferation, glomerulonephritis, uveitis, sepsis, automimmunity inflammatory bowel, type I diabetes, vasculitis and a cell differentiation associated skin disorder. The inhibition, of course, will be sufficient to treat the disorder.

0021The present invention also provides a method of inducing the production of TGFα in a cell comprising contacting the cell with a TGFα inducing amount of a phenylacetic acid derivative of <b><u>General Structure A</u></b>. This method may be used where the induction is in a wound of a subject and the induction is sufficient to promote wound healing.

0022The present invention also provides a method of inhibiting the production of TFG-β2 in a cell comprising contacting the cell with a TGF-β2 inhibiting amount of a phenylacetic acid derivative of <b><u>General Structure A.</u></b>

0023Further provided is a method of treating an AIDS-associated dysfunction of the central nervous system in a subject comprising administering to the subject a therapeutic amount of a phenylacetic acid derivative of <b><u>General Structure A.</u></b>

0024Another embodiment of the present invention is a method of enhancing immunosurveillance in a subject comprising administering to the subject an immunosurveillance enhancing amount of a phenylacetic acid derivative of <b><u>General Structure A.</u></b>

0025The present invention also provides a method of monitoring the bioavailability of a compound of <b><u>General Structure A.</u></b> This method is applicable for the treatment of a pathology not associated with hemoglobin and it comprises administering to a subject the compound and measuring the level of fetal hemoglobin, an increase in the amount of fetal hemoglobin indicating an increased bioavailability of the compound to treat the pathology and a decrease in the amount of fetal hemoglobin indicating a decrease in the bioavailability of the compound to treat the pathology. This method is useful for monitoring a pathology which is a neoplastic condition.

0026The present invention provides a method of promoting the healing of a wound in a subject comprising administering to a wound in the subject a would healing amount of a phenylacetic acid derivative of <b><u>General Structure A.</u></b>

0027Further provided is a method of treating a neoplastic condition in a subject resitant to radiation and chemotherapy comprising administering to said subject a therapeutic amount of a phenylacetic acid derivative of <b><u>General Structure A</u></b>. This method is particularly useful for treatment of a neoplastic condition exhibiting the multiple drug resistant phenotype.

0028Further provided are the the following embodiments:

0029A method of treating a neoplastic condition in a subject comprising administering a therapeutic amount of a retinoid in combination with a therapeutic amount of a phenylacetic acid derivative of <b><u>General Structure A</u>.</b> The retinoid may be all<i>-trans</i>-retinoic acid or 9-<i>cis</i>-retinoic acid. Furthermore, this method may be used to treat neoplastic conditions such as neuroblastoma. Several neoplastic conditions treatable by this method include, but are not limited to, neuroblastoma, acute promyelocytic leukemia, acute myelodisplasia, acute glioma, prostate cancer, breast cancer, melanoma, non-small cell lung cancer, medulloblastoma, and Burkitt's lymphoma.

0030The present invention also provides a method of treating a neoplastic condition in a subject comprising administering a therapeutic amount of an inhibitor of the mevalonate pathway in combination with a therapeutic amount of a phenylacetic acid derivative of <b><u>General Structure A</u>.</b> This method may be practised using inhibitors which are vastatins or an analogs thereof. One particularly suitable vastatin useful for this method is lovastatin. Another class of inhibitors is the terpenes, and, in particular, limonene. Other inhibitors can be screened using the methods set forth in the examples. This method may be used to treat neoplastic conditions including malignant glioma, adenocarcinoma and melanoma. In addition, the neoplastic condition may be of a non-malignant nature, including, but not limited to, such conditions as non-malignant glioma, benign prostatic hyperplasia, and papillomavirus infection. A related method uses the above steps and further includes the steps of continously monitoring the subject for rhabdomyolysis-induced myopathy and in the presence of rhabdomyolysis-induced myopathy, administering ubiquinone to the subject.

0031A further method of the present invention is a method of inhibiting HMG-coA reductase and MVA-PP decarboxylase in a subject with a neoplastic condition, comprising administering a therapeutic amount of an inhibitor of the mevalonate pathway in combination with a therapeutic amount of a phenylacetic acid derivative of <b><u>General Structure A</u></b>. Suitable inhibitors include the class of vastatins and their analogs, and, in particular lovastatin. Other suitable inhibitors are the terpenes and their analogs, and, in particular, limonene. This method may be used to treat neoplastic conditions, if necessary, including malignant glioma, adenocarcinoma and melanoma. A related method also includes the additional steps of continously monitoring the subject for rhabdomyolysis-induced myopathy and in the presence of rhabdomyolysis-induced myopathy, administering ubiquinone to the subject.

0032The present invention also provides a method of treating a neoplastic condition in a subject, comprising administering a therapeutic amount of a flavonoid in combination with a therapeutic amount of a phenylacetic acid derivative of <b><u>General Structure A</u>.</b> Suitable flavonoids include apigenin and quercetin. This method may be used to treat neoplastic conditions including prostatic carcinoma.

0033The present invention provides a further method of treating a neoplastic condition in a subject, comprising administering a therapeutic amount of hydroxyurea in combination with a therapeutic amount of a phenylacetic acid derivative of <b><u>General Structure A</u>.</b> This combination therapy method may be used to treat neoplastic conditions including prostatic carcinoma.

0034In another embodiment, the present invention provides a method of modulating lipid metabolism in a subject, comprising administering a therapeutic amount of a phenylacetic acid derivative of <b><u>General Structure A</u>.</b> In a related embodiment, the present invention provides a method of reducing serum triglycerides in a subject, comprising administering a therapeutic amount of a phenylacetic acid derivative of <b><u>General Structure A</u>.</b>

0035The present invention provides a method of locally treating a neoplastic condition of an internal tissue of a subject, comprising administering, intravesically, a therapeutic amount of a phenylacetic acid derivative of <b><u>General Structure A</u>.</b> This method may be used to locally treat neoplastic conditions of externally accessible internal orifices and bladders. Thus, the intravesicle method may be used to treat neoplastic conditions such as bladder carcinoma and kidney cancer.

0036The present invention provides a method of sensitizing a subject to radiation therapy, comprising administering a therapeutic amount of a phenylacetic acid derivative of <b><u>General Structure A</u>.</b> The present invention also provides for the use of a phenylacetic acid derivative of <b><u>General Structure A</u></b> in combination with agents that interact with retinoid receptors and the use of a phenylacetic acid derivative of <b><u>General Structure A</u></b> as free radical-based radiation or chemotherapy sensitization or protective agent.

0037Also provided is a product for simultaneous, separate, or sequential use in treating a neoplastic condition in a subject, comprising, in separate preparations, a therapeutic amount of a vastatin and a therapeutic amount of a phenylacetic acid derivative of <b><u>General Structure A</u></b>. To this composition may be added a therapeutic amount of ubiquinone. A therapeutic amount of ubiquinone is an amount sufficient to permit tolerance of increased dosage of vastatin (or, specifically, lovastatin) without substantial, concomitant side effects.

0038A further product for simultaneous, separate, or sequential use in treating a neoplastic condition in a subject, comprises, in separate preparations, a therapeutic amount of a retinoid and a therapeutic amount of a phenylacetic acid derivative of <b><u>General Structure A</u>.</b> This composition can be made with retinoids including all-<i>trans</i>-retinoic acid and 9-<i>cis</i>-retinoic acid (or both).

0039Another novel product for simultaneous, separate, or sequential use in treating a neoplastic condition in a subject is provided. This product comprises, in separate preparations, a therapeutic amount of hydroxyurea and a therapeutic amount of a phenylacetic acid derivative of <b><u>General Structure A</u></b><u>.</u>

0040The present invention provides a composition, comprising a therapeutic amount of a vastatin and a therapeutic amount of a phenylacetic acid derivative of <b><u>General Structure A.</u></b>

0041The present invention further provides a composition, comprising a therapeutic amount of a retinoid and a therapeutic amount of a phenylacetic acid derivative of <b><u>General Structure A</u></b>.

0042Finally, the present invention provides a composition, comprising a therapeutic amount of hydroxyurea and a therapeutic amount of a phenylacetic acid derivative of <b><u>General Structure A</u></b>.

IV

.

<u>BRIEF DESCRIPTION OF THE DRAWINGS</u>

0043<ul id="ul0001" list-style="none"><li>Figure 1 shows serum concentrations of PA and PAG and plasma concentrations of glutamine following a 150 mg/kg i.v. bolus of PA over 2 hours.</li><li>Figure 2 shows the time-dependent changes in cell proliferation and Hb production. NaPA (5 mM) was added on days 2, 4, 6, and 8 of phase II cultures derived from normal donorsl, and the cells were analyzed on day 13. Panel A: Nubmer of Hb-containing cells per ml (x10^-4), and the amounts of Hb (pg) per cell (MCH). Panel B: Total Hb (pg) per ml culture, and the proportion of HbF out of total Hb (%HbF). Data points represent the means of four determinations. The deviation of results of each determination from the mean did not exceed 10%. NaPB at 2.5 mM produced comparable effects (not shown). In all cases, cell viability was over 95%.</li><li>Figure 3 shows the effect of NaPA on the proportions of Hb species in cultured erythroid precursors derived from a patient with sickle cell anemia. NaPA was added to 7 day phase II cultures. The cells were harvested and lysed on day 13, and the proportions of HbF, HbA₂, and HbS were determined following separation on cation exchange HPLC.</li><li>Figure 4 shows the enhanced expression of the surface antigens W6/32 (MHC class I), DR (MHC class II) and ICAM-1 in melanoma cells treated with NaPB. Melanoma 1011 cells were treated with 2mM PB for 10 days. Treatment was discontinued for 3 days to document the stability of the effect. FACS analysis revealed markedly increased expression of the antigens following treatment (shaded area); the expression of the surface antigens was similar or slightly greater on day 13 than on day 10, indicating that PB induced terminal differentiation.</li><li>Figure 5 shows the activation of the Peroxisomal Proliferator Receptor (PPAR) by PA, PB and various phenylacetic acid analogs. The activation is measured by the increased production of the indicator gene for cloramphenicol acetyl transferase (CAT), which is controlled by the response element for acyl-CoA oxidase, relative to the control (C). The experimental details for this activation measurement method can be found in Sher et al., <i>Biochem.,</i> 32(21):5598 (1993)). The concentration (in mM) of a particular drug is noted next to the following symbols for the various drugs: CF=clofibrate, PA=phenylacetate, CP=chlorophenylacetate, PB=phenylbutyrate, CPB=chlorophenylbutyrate, PAG-phenylacetylglutamine, IPB=iodophenylbutyrate, B=butyrate, IAA= indole acetic acid, NA=naphthylacetate, PP=phenoxypropionic acid, 2-4D=2,4-dichlorophenoxy acetate.</li><li>Figure 6 shows the modulation by phenylbutyrate of glutathione (GSH), gamma-glutamyl transpeptidase (GGT) and catalase activites. The antioxidant capacity (mM or units/mg protein) of the enzymes were measured for up to approximately 100 hours following treatment of prostatic PC3 cells with 2 mM NaPB.</li><li>Figure 7 shows the radiosensitization by PA and PB of human glioblastoma U87 cells by pretreatment for 72 hours with 1,3 and 5 mM PA and 2.5mM PB prior to exposure to ionizing radiation (Co⁶⁰ γ-radiaition).</li><li>Figure 8 shows the relationship between lipophilicity and the cytostasis induced by phenylacetate derivatives in prostate carcinoma cells and in plants. The log I/IC₅₀ values for prostatic cells (calculated from data presented in Table 14), were compared with the l/IC₅ for rapidly developing plant tissues. Tested compounds, listed in an increasing order of their CLOGPs, included 4-hydroxy-PA, PA, 4-fluoro-PA, 3-methyl-PA, 4-methyl-PA, 4-chloro-PA, 3-chloro-PA, and 4-iodo-PA.</li><li>Figure 9 shows the phenotypic reversion induced by phenylacetate and selected derivatives. The malignant prostatic PC3 cells were treated as described in "Material and Methods". Data indicates the relative potency of tested compounds in significantly inhibiting PC3 anchorage-independence (A) and completely blocking matrigel invasion (B). Phenylacetate and analogs are presented in an increasing order of CLOGP (top to bottom). CLOGP values are provided in Tables 14 and 15. The effect on anchorage-dependency was confirmed with U87 cells (not shown).</li><li>Figure 10 shows a dose-response curve of the effect of NaPA on the incorporation of [³H]thymidine in LA-N-5 cells after 7 days of treatment. Values represent the mean ± S.E.M. of quadruplicate samples of a typical experiment.</li><li>Figure 11 shows dose response curves showing the effects ofNaPA alone (○) and in the presence of 10^-7 M (▼) and 10^-6 M(•) RA on specific AChE activity in LA-N-5 cells after 7 days of culturing. Each point represents the mean of three replicate cultures (S.E.M. &lt; 10% in all cases).</li><li>Figure 12 shows dose-response curves showing the effects of PA (solid lines) and phenylbutyrate (PB) (dashed lines) on the incorporation of [³H]thymidine into triangles, SK-N-AS; solid diamonds, LA-N-5; hollow diamonds, Lan-1-15N, solid squares, LA-N-6; hollow squares, SK-N-SH-F; solid circles, SK-N-SH-N; and hollow circles, LA-N-2 cells after 7 days of treatment. In all cases, PB was a more potent inhibitor of cell proliferation than PA.</li><li>Figure 13 shows the time course of PA and PB induced growth inhibition on LA-N-5 neuroblastoma. Cells were treated with the indicated concentrations of phenylbutyrate (A) or phenylacetate (B) on day 0 and assayed for incorporation of [³H]thymidine on a daily basis as shown.</li><li>Figure 14 shows the time course of specific AChE activity of LA-N-5 cells in the absence or presence of various concentrations of PB (A) or PA (B) as indicated. In all cases, increased in AChE temporarily preceded induced reduction of [³H]thymidine incorporation as shown in Figure 13. The sharp decline in AChE activity seen with 4 mM PB after 4 days of treatment is probably due to reduced viability of the cultures.</li><li>Figure 15 shows the reversibility of the antiproliferative effects of phenylacetate and phenylbutyrate on LA-N-5 cells. The cells were cultured in the absence (O) or presence of PA (solid circles; 5 mM) or PB (solid squares; 2 mM) for 6 days, then washed and refed with either control medium (solid lines) or medium containing the same concentration of agent as during the treatment phase (dashed lines). Following washing, the cells were assayed for incorporation of [³H]thymidine after culturing for various days as indicated up to a posttreatment period of 2 weeks.</li><li>Figure 16 shows the reversibility of induced increases in specific AChE activity. LA-N-5 cells were cultured in the absence (solid square) or presence of PA (vertical striped square; 5 mM) or PB (crossed striped square; 2 mM) for 6 days, then washed and refed with either control medium (solid bar graph) or medium containing the same concentration of agent as during the treatment phase (line graph with box symbols). The cells were assayed for specific AChE activity after culturing for various days as indicated up to a posttreatment period of 1 week.</li><li>Figure 17 shows the growth arrest of A172 glioma cells upon treatment with NaPA, LOV and a combination of the two drugs (3 days continuous treatment).</li><li>Figure 18 shows the suppression of glioma cell invasiveness (A172 cell, 3 days continuous treatment) by phenylacetate (2 mM) in combination with lovastatin (0.1 µM).</li><li>Figure 19 shows the potentiation of antitumor agents by NaPA.</li><li>Figure 20 shows the duration of drug exposure versus survival curve of hydroxyurea (100 µM) in PC-3 cells. The cells were exposed to drug for varying periods of time, but all were grown for a total of 5 days (120 hours). Drug exposure was terminated at the various intervals by replacing drug-containing medium with drug-free medium. This experiment did not detect any recovery in cell viability following brief periods of drug exposure. The IC₅₀ was only achieved after 120 hours of exposure.</li><li>Figure 21 shows the growth inhibitory effects of PA on various neuroectodermal tumor cell lines. The cells were grown in 96 well microtiter plates in MEM+10% FCS and treated with various concentrations of PA or media alone for 96 h. Then 1 µCi of ³H-thymidine was added per well. After 4 h the cells were harvested using a semiautomated cell harvester and the amount of ³H-thymidine uptake determined by liquid scintillation counting.</li><li>Figure 22 shows how neutralizing antibodies against human TGFβ1 (upper panel) and TGFβ2 (lower panel) failed to antagonize the antiproliferative effect of PA on U251 cells. U251 cells were cultured in 96 well microtiter plates in MEM+10% FCS in the presence of 10 mM PA or media alone. Neutralizing antibodies directed against TGFβ or TGFβ2 were added to the PA containing wells at the beginning of the incubation period. Normal IgG of the corresponding species served as a control. The rate of cell proliferation was determined by adding 1 uCi of 3H-thymidine per well and harvesting the cells after 4 h 3H-thymidine incorporation was determined by liquid scintillation counting.</li></ul>

V.

DETAILED DESCRIPTION OF THE INVENTION

0044As used herein, the term "phenylacetic acid derivative" (or "phenylacetic acid analog") refers to a compound of the formula: <chemistry id="chem0002" num="0002"><img file="EP1523982A2_D0002.tif" /></chemistry> ; wherein    R₀ is aryl (e.g., phenyl, napthyl), phenoxy, substituted aryl (e.g., one or more halogen [e.g., F, Cl, Br, I], lower alkyl [e.g., methyl, ethyl, propyl, butyl) or hydroxy substituents) or substituted phenoxy (e.g., one or more halogen [e.g., F, Cl, Br, I], lower alkyl [e.g., methyl, ethyl, propyl, butyl] or hydroxy substituents);    R₁ and R₂ are each H, lower alkoxy (e.g., methoxy, ethoxy), lower straight and branched chain alkyl (e.g., methyl, ethyl, propyl, butyl) or halogen (e.g., F, Cl, Br, I);    R₃ and R₄ are each H, lower straight and branched chain alkyl (e.g., methyl, ethyl, propyl, butyl), lower alkoxy (e.g., methoxy, ethoxy) or halogen (e.g., F, Cl, Br, I); and    n is an integer from 0 to 2; salts thereof (e.g., Na⁺, K⁺ or other pharmaceutically acceptable salts); stereoisomers thereof, and mixtures thereof.

0045When n is equal to 2, each of the two R₃ substituents and each of the two R₄ substituents can vary independently within the above phenylacetic acid derivative definition. It is indended that this definition includes phenylacetic acid (PAA) and phenylbutyric acid (PBA). Mixtures according to this definition are intended to include mixtures of carboxylic acid salts, for instance, a mixture of sodium phenylacetate and potassium phenylacetate. Because the carboxylic portion of these compounds is a primarily active portion, references herein to a carboxylate, such as phenylacetate (PA) or phenylbutyrate (PB), are intended to refer also to an appropriate counter cation, such as Na⁺, K⁺ or another pharmaceutically acceptable cation such as an organic cation (e.g., arginine). Thus, as used herein, a PA or PB derivative or analog refers to the phenylacetic acid derivatives of this definition. Some of these derivatives can be interconverted when present in a biological system. For instance, PA can be enzymatically converted to PB within an animal and, similarly, PB can be converted to PA.

0046Thus, phenylacetic acid derivatives include, without limitation, phenylacetic acid, phenylpropionic acid, phenylbutyric acid, 1-naphthylacetic acid, phenoxyacetic acid, phenoxypropionic acid, phenoxybutyric acid, 4-chlorophenylacetic acid, 4-chlorophenylbutyric acid, 4-iodophenylacetic acid, 4-iodophenylbutyric acid, α-methylphenylacetic acid, α-methoxyphenylacetic acid, α-ethylphenylacetic acid, α-hydroxyphenylacetic acid, 4-fluorophenylacetic acid, 4-fluorophenylbutyric acid, 2-methylphenylacetic acid, 3-methylphenylacetic acid, 4-methylphenylacetic acid, 3-chlorophenylacetic acid, 3-chlorophenylbutyric acid, 2-chlorophenylacetic acid, 2-chlorophenylbutyric acid and 2,6-dichlorophenylacetic acid, and the sodium salts of the these compounds.

0047The compounds of the present invention can be administered intravenously, enterally, parenterally, intramuscularly, intranasally, subcutaneously, topically, intravesically or orally. The dosage amounts are based on the effective inhibitory concentrations observed <i><u>in vitro</u></i> and <i><u>in vivo</u></i> in antitumorigenicity studies. The varied and efficacious utility of the compounds of the present invention is further illustrated by the findings that they may also be administered concomitantly or in combination with other antitumor agents (such as hydroxyurea, 5-azacytidine, 5-aza-2'-deoxycytidine, and suramin); retinoids; hormones; biological response modifiers (such as interferon and hematopoietic growth factors); and conventional chemo- and radiation therapy or various combinations thereof.

0048It is understood that the methods and compositions of this invention can be used to treat animal subjects, including human subjects.

0049As used throughout this application, the phrase "in combination with" refers to treatment with the constituent drugs of the combination either simultaneously or at such intervals that the drugs are simultaneously active in the body. Furthermore, as used herein, the term "therapeutic amount" refers to an amount of an agent, drug or other compound of the generic class which is suitable for the claimed use. Therefore, "therapeutic amount" excludes members of the class which do not have the recited activity.

0050As used herein, the terms "retinoid" or "retinoids" includes any suitable members of the generic class including, but not limited to: 9-<i>cis</i>-retinoic acid and all<i>-trans</i>-retinoic acid. Retinoid combination therapy is suitable for the treatment of cancers including breast cancer, leukemia and malignant melanoma.

0051As used herein, inhibitors of the mevalonate pathway include compounds such as terpenes and vastatins. Suitable vastatins include lovastatin. Suitable terpenes include limonene and its analogs.

0052The bioflavonoids are a class of compounds also known as the vitamin P complex and are known for their influence on capillary fragility (hemostatic). They are generally known to decrease capillary permeability and fragility. As used herein, flavonoids include apigenin and quercetin. However, other flavonoids would be expected to elicit the similar utility.

0053The particular activity of each of the compounds can be screened using the assays and models described in the Examples.

0054As used herein, "modulating lipid metabolism" describes the ability of a therapy to alter lipid production and degradation <i>in vivo</i>. For example, one modulation of lipid metabolism is the reduction of serum triglycerides (the level of low and high density lipoproteins in a subject's serum), <i>i.e.</i> the lowering of a subject's cholesterol level.

VI. <u>EXAMPLES</u>

0055The herein offered examples, including experiments, provide methods for illustrating, without any implied limitation, the practice of this invention focusing on phenylacetic acid and its derivatives directed to A. Use of phenylacetic acid and its derivatives in thre treatment or prevention of cancer, B. Use of phenylacetic acid and its derivatives in wound healing; C. Use of phenylacetic acid and its derivatives in treatment of diseases associated with interleukin-6; D. Use of phenylacetic acid and its derivatives in the treatment of AIDS-associated CNS dysfunction; E. Use of phenylacetic acid and its derivatives to enhance immunosurveillanee; F. Method of monitoring the dosage level of phenylacetic acid and its derivatives in a patient and/or the patient's response to these drugs; G. The activation of the PPAR by phenylacetic acid and its derivatives; H. Use of phenylacetic acid and its derivatives in treatment of cancers having a multiple-drug resistant phenotype; I. Phenylacetic acid and its derivatives, correlation between potency and lipophilicity, J. Phenylacetic acid and its derivatives in synergistic combination with retinoic acid for the treatment and prevention of cancers such as those involving neuroblastoma cells; K. Phenylacetic acid and its derivatives in synergistic combination with lovastatin for the treatment and prevention of cancers such as malignant gliomas or other CNS tumors; L. Phenylacetic acid and its derivatives for the treatment and prevention of cancers and other differentiation disorders such as those involving malignant melanoma or other neuroectodermal tumors; M. Phenylacetic acid and its derivatives in synergistic combination with hydroxyurea (HU) for the treatment and prevention of cancers such as prostate cancer; N. Phenylacetic acid and its derivatives for the treatment and prevention of cancers involving medulloblastoma and astrocytoma derived cells; O. Phenylacetic acid and its derivatives in human studies relating to treatments with PA and PB; P. Phenylacetic acid and its derivatives in methods of altering lipid metabolism, including reducing serum triglyerides; Q. Induction of HbF by phenylacetic acid and its derivatives in malignant and nonmalignant cells; and R Methods of administering phenylacetic acid and its derivatives.

SECTION A: USE OF PHENYLACETIC ACID AND ITS DERIVATIVES IN THE TREATMENT OR PREVENTION OF CANCER

0056As discussed herein, NaPA and NaPB affect tumor growth <i>in vitro</i> and in animal models at pharmacological, non-toxic concentrations. These aromatic fatty acids induce cytostasis and promote maturation of various human malignant cells, including hormone-refractory prostatic carcinoma, glioblastoma, malignant melanoma, and lung carcinoma. The marked changes in tumor biology were associated with alterations in the expression of genes implicated in tumor growth, invasion, angiogenesis, and immunogenicity. Multiple mechanisms of drug action appear to be involved. These mechanisms include (a) modification of lipid metabolism, (b) regulation of gene expression through DNA hypomethylation and transcriptional activation, and (c) inhibition of protein isoprenylation. Phase I clinical trials confirmed the efficacy of these novel, nontoxic differentiation inducers.

0057Pharmaceutical compositions containing phenylacetic acid derivatives have been shown to cause reversal of malignancy and to induce differentiation of tumor cells. For instance, to demonstrate the capacity of drugs to induce differentiation of tumor cells, different <i>in vitro</i> and <i>in vivo</i> differentiation model systems were used. A first system used was a human promyclocytic leukemia cell line HL-60. This cell line represents uncommitted precursor cells that can be induced to terminally differentiate along the myeloid or monocytic lineage. In a second system, immortalized embryonic mesenchymal C3H 10T1/2 cells were used which have the capability of differentiating into myocytes, adipocytes, or chondrocytes. A third system, human erythroleukemia K562 cells were used becasue they can be induced to produce hemoglobin. <i>In vivo</i> experiments demonstrate the efficacy of NaPA in inducing terminal differentiation in humans and animals.

EXAMPLE 1

: Growth arrest in malignant glomas

0058In addition, Phenylacetate has been implicated in damage to immature brain in phenylketonuria. Because of similarities in growth pattern and metabolism between the developing normal brain and malignant central nervous system tumors, phenylacetate may be detrimental to some brain cancers. Phenylacetate can induce cytostasis and reversal of malignant properties of cultured human glioblastoma cells, when used at pharmacological concentrations that are well tolerated by children and adults. Interestingly, treated tumor cells exhibited biochemical alterations similar to those observed in phenylketonuria-like conditions, including selective decline in <u>de novo</u> cholesterol synthesis from mevalonate. Since gliomas, but not mature normal brain cells, are highly dependent on mevalonate for production of sterols and isoprenoids vital for cell growth, phenylacetate would be expected to affect tumor growth <u>in vivo</u>, while sparing normal tissues. Systemic treatment of rats bearing intracranial gliomas resulted in significant tumor suppression with no apparent toxicity to the host. The experimental data, which are consistent with clinical evidence for selective activity against undifferentiated brain, suggest that phenylacetate may offer a safe and effective novel approach to treatment of malignant gliomas.

0059Clinical experience, obtained during phenylacetate treatment of children with urea cycle disorders, indicates that millimolar levels can be achieved without significant adverse effects. The lack of neurotoxicity in these patients is, however, in marked contrast to the severe brain damage documented in phenylketonuria (PKU), an inborn error of phenylalanine metabolism associated with excessive production of phenylacetate, microcephaly, and mental retardation. [Scriver, C.R, and C.L. Clow. 1980. Phenylketonuria: epitome of human biochemical genetics. <u>New Engl. J. Med.</u> 303: 1394-1400.] The differences in clinical outcome can be explained by the fact that, although phenylacetate readily crosses the blood-brain barrier in both prenatal and postnatal life, neurotoxicity is limited to the immature brain. Compelling evidence for a developmentally restricted window of susceptibility is provided by the phenomenon of "maternal PKU syndrome": PKU females who are diagnosed early and maintained on a phenylalanine-restricted diet, develop normally and subsequently tolerate a regular diet. These women often give birth to genetically normal, yet mentally retarded infants due to the untreated maternal PKU. The elevated levels of circulating phenylacetate, while sparing the mature tissues of the mother, are detrimental to the fetal brain. The primary pathological changes in PKU involve rapidly developing glial cells and are characterized by alterations in lipid metabolism and myelination with subsequent neuronal dysfunction. The vulnerable fetal glial tissues resemble neoplastic glial cells in numerous molecular and biochemical aspects, including unique dependence upon mevalonate (MVA) metabolism for synthesis of sterols and isoprenoids critical to cell replication [Kandutsch, A.A., and S.E. Saucier. 1969. Regulation of sterol synthesis in developing brains of normal and jimpy mice. <u>Arch. Biochem. Biophys.</u> 135: 201-208; Fumagalli, R., E. Grossi, P. Paoletti, and R. Paoletti. 1964. Studies on lipids in brain tumors. I. Occurrence and significance of sterol precursors of cholesterol in human brain tumors. <u>J. Neurochem</u>. 11: 561-565; Grossi, E., P. Paoletti, and R. Paoletti. 1958. An analysis of brain cholesterol and fatty acid biosynthesis. <u>Arch. Int. Physiol. Biochem.</u> 66: 564-572], and on circulating glutamine as the nitrogen donor for DNA, RNA and protein synthesis [Perry, T.L., S. Hasen, B. Tischler, R. Bunting, and S. Diamond. 1970. Glutamine depletion in phenylketonuria, a possible cause of the mental defect. <u>New Engl. J. Med.</u> 282: 761-766; Weber, G. 1983. Biochemical strategy of cancer cells and the design of chemotherapy: G.H.A. Clowes Memorial Lecture. <u>Cancer Res</u>. 43: 3466-3492]. The hypothesis underlying these studies was that phenylacetate, known to conjugate and deplete serum glutamine in humans, and to inhibit the MVA pathway in immature brain [Castillo, M., MF. Zafra, and E. Garcia-Peregrin. 1988. Inhibition of brain and liver 3-hydroxy-3-methylglutaryl-CoA reductase and mevalonate-5-pyrophosphate decarboxylase in experimental hyperphenylalaninemia. <u>Neurochem. Res.</u><b>13</b>:551-555; Castillo, M., J. Iglesias, M.F. Zafra, and E. Garcia-Peregrin. 1991. Inhibition of chick brain cholesterogenic enzymes by phenyl and phenolic derivatives of phenylalanine. <u>Neurochem. Int</u>. <b>18</b>: 171-174; Castillo, M., M. Martinez-Cayuela, M.F. Zafra, and E. Garcia-Peregrin. 1991. Effect of phenylalanine derivatives on the main regulatory enzymes of hepatic cholestrogenesis. <u>Mol. Cell. Biochem</u>. <b>105</b>: 21-25], might attack these critical control points in malignant gliomas. The efficacy of phenylacetate was demonstrated using both <u>in vitro</u> and <u>in vivo</u> tumor models. <b>Cell Cultures and Reagents</b>. Human glioblastoma cell lines were purchased from the American Type Culture Collection (ATCC, Rockville, MD), and maintained in RPMI 1640 supplemented with 10% heat inactivated fetal calf serum, antibiotics and 2 mM L-glutamine, unless otherwise specified. Human umbilical vein endothelial cells, isolated from freshly obtained cords, were provided by D. Grant and H. Kleinman (NIH, Bethesda MD). Sodium salts of phenylacetic acid and of phenylbutyric acid were provided by Elan Pharmaceutical Corporation (Gainseville, GA). Phenylacetylglutamine was a gift from S. Brusilow (Johns Hopkins, MD). <b>Evaluation of Cell Replication and Viability.</b> Growth rates were determined by an enzymatic assay using 3-[4,5-dimethylthiazol-2-yl]-2,5-diphenyltertrazolium bromide (Sigma, St. Louis, MO) [Alley, M.C., D.A. Scudiero, A. Monks, M.L. Hursey, M.J. Czerwinski, D.L. Fine, B.J. Abbott, J.G. Mayo, R.H. Schoemaker, and M.R. Boyd. 1988. Feasibility of drug screening with panels of human tumor cell lines using a microculture tetrazolium assay. <u>Cancer Res</u>. <b>48</b>: 589-601], cell enumeration with a hemocytometer following detachment with trypsin/EDTA, and by thymidine incorporation into DNA. The different assays produced essentially the same results. Cell viability was assessed by trypan blue exclusion. <b>Colony Formation in Semi-Solid Agar</b>. Tumor cells were detached with trypsin/EDTA, re-suspended in growth medium containing 0.36% agar, and placed onto a base layer of solid agar (0.9%) in the presence or absence of drugs. Colonies composed of 30 or more cells were scored after three weeks. <b>Immunocytochemistry</b>. Cells were immunostained with anti-vimentin monoclonal antibodies using Dako PAP kit K537 (Dako Corporation, CA). <b>Measurement of Cholesterol, Protein and DNA Synthesis.</b> For studies of steroid synthesis, cells were labeled for 24 hours with 5 x 10⁶ DPM [5-³H]-mevalonate (35 Ci/mmol) (New England Nuclear, Boston, MA) in growth medium containing 3 µM lovastatin and 0.5 mM unlabeled mevalonate, in the presence or absence of 5 mM phenylacetate or 2.5 mM phenylbutyrate. Cellular steroids were extracted with hexane and separated by silica thin layer chromatography. The R_f of the hexane-soluble radiolabled product was identical to that of a radiolabled cholesterol standard in three different solvent systems. Similarly treated cells were tested for <u>de novo</u> protein and DNA synthesis by metabolic labeling with [³H]-leucine (158 Ci/mmol) or [³H]-deoxythymidine (6.7 Ci/mmol)(New England Nuclear). Measurements of ¹⁴CO₂ released from [1-¹⁴C]-mevalonate (49.5 mCi/mmol)(Amersham, Chicago, IL) in cell homogenates incubated with phenylacetate / phenylbutyrate were performed with minor modifications to established procedures. <b>Analysis of Protein Isoprenylation</b>. Cell cultures were incubated with 10 mM phenylacetate or 25 mM phenylbutyrate for 24 hours in complete growth medium, and labeled with RS-[2-¹⁴C]-mevalonate (16 µCi/ml, specific activity 15 µCi/mmol) (American Radiolabeled Chemicals, Inc. St. Louis, MO) during the final 15 hours of treatment. Whole cell proteins were extracted, resolved on 10% SDS-polyacrylamide gels, and stained with Commassie Brilliant Blue. Gels were then dried and exposed to Kodak X-Omat film for 4 days. <b>Animal Studies</b>. To determine the effect of phenylacetate on the tumorigenic phenotype of human glioblastoma cells, cultures were pre-treated for one week and then harvested, resuspended in medium containing 30% matrigel (Collaborative Biomedical products, Bedford, MA), and transplanted s.c. (2.5 x 10⁶ cells per site) into 5-week old female athymic mice (Division of Cancer Treatment, NCI Animal Program, Frederick Cancer Research Facility). The animals were then observed for tumor growth at the site of injection. To further evaluate drug efficacy <u>in vivo</u>, Fisher 344 rats received a stereotaxic inoculation of syngeneic 9L gliosarcoma cells (4 x 10⁴) into the deep white matter of the right cerebral hemisphere, as previously described [Weizsaecker, M., D.F., Deen, M.L. Rosenblum, T. Hoshino, P.H. Gutin, and M. Baker. 1981. The 9L rat brain tumor: description and application of an animal model. <u>J. Neurol</u>, <b>224</b>: 183-192; Culver, K.W., Z. Ram, S. Walbridge, H. Ishii, E.H. Oldfield. and R.M. Blaese. 1992. In vivo gene transfer with retroviral vector producer cells for treatment of experimental brain tumors. <u>Science</u>, <b>256</b>: 1550-1552]. The animals were then subjected to two weeks of continuous treatment with sodium phenylacetate (550 mg/kg/day, s.c.), using osmotic minipumps transplanted subcutaneously. In control rats the minipumps were filled with saline. Statistical analysis of data employed the Fisher's Exact Test. <b>Induction of cytostasis and phenotypic reversion in cultured human glioblastoma cells</b>. Treatment of glioblastoma cells with phenylacetate resulted in time- and dose-dependent growth arrest, accompanied by similarly diminished DNA synthesis. After 4-6 days of continuous treatment with 4 mM phenylacetate, there was approximately 50% inhibition of growth in U87, A172, U373, U343, and HS683 cultures (IC₅₀) 4.4 ± 0.6 mM) Reflecting on the heterogenous nature of tumor cell responses, glioblastoma U251 and U138 cells were less sensitive with IC₅₀ values of 8-10 mM. Further studies, mimicking pharmacological conditions that are expected in patients, involved exposure of cells to phenylacetate in glutamiae-depiefed medium. These conditions completely blocked glioblastoma cell growth, but had little effect on the replication of normal endothelial cells. Phenylbutyrate, an intermediate metabolite of phenylacetate formed in the brain by fatty acid elongation, also inhibited tumor cell replication (IC₅₀) 2.2 ± 0.2 mM in A172, U87 and U373), while the end metabolite, phenylacetylglutamine, was inactive. In addition to inducing selective tumor cytostasis, both phenylacetate and phenylbutyrate promoted cell maturation and reversion to a nonmalignant phenotype, manifested by an altered pattern of cytoskeletal intermediate filaments, loss of anchorage-independence, and reduced tumorigenicity in athymic mice (Table 1). These profound changes in tumor behavior were accompanied by alterations in the expression of genes implicated in growth control angiogenesis, and immunosuppression (e.g., TGFα, HbF, and TGF-β2). <tables id="tabl0001" num="0001"><table frame="all"><title>Table 1:</title><tgroup cols="3" colsep="1" rowsep="0"><colspec colnum="1" colname="col1" colwidth="52.50mm" /><colspec colnum="2" colname="col2" colwidth="52.50mm" /><colspec colnum="3" colname="col3" colwidth="52.50mm" /><thead valign="top"><row rowsep="1"><entry namest="col1" nameend="col3" align="center">Reversal of Malignancy of Human Glioblastoma Cells</entry></row><row rowsep="1"><entry namest="col1" nameend="col1" rowsep="0" align="center">Treatment</entry><entry namest="col2" nameend="col2" rowsep="0" align="center">Clonogenicity in Soft Agar¹ (%)</entry><entry namest="col3" nameend="col3" align="center">Tumor Incidence²</entry></row><row rowsep="1"><entry namest="col1" nameend="col1" /><entry namest="col2" nameend="col2" /><entry namest="col3" nameend="col3" align="center">Positive/Injected Sites</entry></row></thead><tbody valign="top"><row><entry namest="col1" nameend="col1" align="left">None</entry><entry namest="col2" nameend="col2" align="left">8.1</entry><entry namest="col3" nameend="col3" align="left">9/10</entry></row><row><entry namest="col1" nameend="col1" align="left">Phenylacetate</entry><entry namest="col2" nameend="col2" /><entry namest="col3" nameend="col3" /></row><row><entry namest="col1" nameend="col1" align="left">   2.5 mM</entry><entry namest="col2" nameend="col2" align="left">0.5</entry><entry namest="col3" nameend="col3" align="left">ND</entry></row><row><entry namest="col1" nameend="col1" align="left">   5 mM</entry><entry namest="col2" nameend="col2" align="left">>0.01</entry><entry namest="col3" nameend="col3" align="left">2/10</entry></row><row><entry namest="col1" nameend="col1" align="left">Phenylbutyrate</entry><entry namest="col2" nameend="col2" /><entry namest="col3" nameend="col3" /></row><row><entry namest="col1" nameend="col1" align="left">   1.25 mM</entry><entry namest="col2" nameend="col2" align="left">0.15</entry><entry namest="col3" nameend="col3" align="left">ND</entry></row><row rowsep="1"><entry namest="col1" nameend="col1" align="left">   2.5 mM</entry><entry namest="col2" nameend="col2" align="left">>0.01</entry><entry namest="col3" nameend="col3" align="left">1/10</entry></row></tbody></tgroup><tgroup cols="3" colsep="0" rowsep="0"><colspec colnum="1" colname="col1" colwidth="52.50mm" /><colspec colnum="2" colname="col2" colwidth="52.50mm" /><colspec colnum="3" colname="col3" colwidth="52.50mm" /><tbody valign="top"><row><entry namest="col1" nameend="col3" align="justify">¹   U87 cells were detached with trypsin/EDTA, resuspended in growth medium containing 0.36% agar, and placed onto a base layer of solid agar (0.9%) in the presence or absence of drugs. Colonies composed of 30 or more cells were scored after three weeks.</entry></row><row><entry namest="col1" nameend="col3" align="justify">²   U87 cells pre-treated in culture for one week, were harvested, resuspended in medium containing 30% matrigel, and transplanted s.c. into 5-week old female athymic mice (2.5 x 10⁶ cells per mouse). Data were recorded 5 weeks after cell inoculation. ND = not determined.</entry></row></tbody></tgroup></table></tables><b>Phenylacetate inhibits the mevalonate pathway and protein isoprenylation.</b> The most consistent biochemical change observed in glial cells exposed to phenylacetate involved alterations in lipid metabolism and inhibition of the MVA pathway. Active <u>de novo</u> synthesis of cholesterol and isoprenoids from precursors such as acetyl-CoA and MVA is an important feature of the developing brain (but not the mature brain), coinciding with myelination. It is also a hallmark of malignant gliomas [Azarnoff, D.L., G.L. Curran, and W.P. Williamson. 1958. Incorporation of acetate-1-¹⁴C into cholesterol by human intracranial tumors in vitro. <u>J. Nat. Cancer Inst</u>. <b>21</b>: 1109-1115; Rudling. M.J., B. Angelin, C.O. Peterson, and V.P. Collins. 1990. Low density lipoprotein receptor activity in human intracranial tumors and its relation to cholesterol requirement. <u>Cancer Res.</u><b>50 (suppl)</b>: 483-487]. Cholesterol production and protein isoprenylation diminished within 24 hours of glioblastoma treatment with either phenylacetate or phenylbutyrate, preceding changes in DNA and total protein synthesis, which were detectable after 48 hours. The reduction in isoprenylation was paralleled by a decrease in MVA decarboxylation (to less than 50% of control), an effect previously observed in embryonic brain in PKU-like conditions. MVA-5-pyrophosphate decarboxylase, a key enzyme regulating cholesterol synthesis in brain, is inhibited by phenylacetate under conditions in which MVA kinase and MVA-5-phosphate kinase are only minimally affected. Phenylacetate might also interfere with MVA synthesis from acetyl-CoA. Glioblastoma cells could not, however, be rescued by exogenous MVA (0.3-3 mM), suggesting that MVA utilization, rather than its synthesis, is the prime target.

0060Mevalonate is a precursor of several isopentenyl moieties required for progression through the cell cycle such as sterols, dolichol, the side chains of ubiquinone and isopentenyladenine, and prenyl groups that modify a small set of critical proteins [Goldstein, J.L., and M.S. Brown. 1990. Regulation of the mevalonate pathway. <u>Nature.</u><b>343</b>: 425-430; Marshall, C.J. 1993. Protein prenylation: A mediator of protein-protein interactions. <u>Science</u>. <b>259</b>: 1865-1866; Braun, P.E., D. De Angelis, W.W. Shtybel, and L. Bernier. 1991. Isoprenoid modification permits 2',3'-cyclic nucleotide 3'-phosphodiesterase to bind to membranes. <u>J. Neurosci. Res.</u><b>30</b>: 540-544]. The latter include plasma membrane G and G-like proteins (e.g., <u>ras</u>) involved in mitogenic signal transduction (molecular weight 20-26 kDa). the myelination-related enzyme 2',3'-cyclic nucleotide 3'-phosphodiesterase, and nuclear envelope lamins that play a key role in mitosis (44-74 kDa). Inhibition of sterol and isoprenoid synthesis during rapid development of the brain could lead to the microcephaly and impaired myelination seen in untreated PKU. Targeting MVA in dedifferentiated malignant gliomas, on the other hand, would be expected to inhibit tumor growth <u>in vivo</u> without damaging the surrounding normal tissues, as the MVA pathway is significantly less active in mature brain. <b>Activity of phenylacetate in experimental gliomas in rats.</b> To evaluate the <u>in vivo</u> antitumor effect of phenylacetate, Fisher rats were inoculated with stereotaxic intracerebral injection of syngeneic 9L gliosarcoma cells. This tumor model is known for its aggressive growth pattern that results in nearly 100% mortality of rats within 3 to 4 weeks. Phenylacetate was continuously administered by implanted subcutaneous osmotic minipumps to deliver a clinically-achievable dose of 550 mg/kg/day. Systemic treatment for two weeks of rats bearing intracranial glioma cells markedly suppressed tumor growth (p &lt; 0.05, Table 2) with no detectable adverse effects. Further studies in experimental animals indicate that phenylacetate (plasma and cerebrospinal fluid levels of 2-3 mM) induces tumor cell maturation <u>in vivo</u> and significantly prolongs survival. <tables id="tabl0002" num="0002"><table frame="all"><title>Table 2:</title><tgroup cols="5" colsep="1" rowsep="1"><colspec colnum="1" colname="col1" colwidth="31.50mm" /><colspec colnum="2" colname="col2" colwidth="31.50mm" /><colspec colnum="3" colname="col3" colwidth="31.50mm" /><colspec colnum="4" colname="col4" colwidth="31.50mm" /><colspec colnum="5" colname="col5" colwidth="31.50mm" /><thead valign="top"><row><entry namest="col1" nameend="col5" align="center">Phenylacetate Activity in Experimental Brain Cancer</entry></row><row><entry namest="col1" nameend="col1" /><entry namest="col2" nameend="col2" /><entry namest="col3" nameend="col5" align="center">Brain Tumors²</entry></row><row><entry namest="col1" nameend="col1" align="left">Treatment¹</entry><entry namest="col2" nameend="col2" align="left">No. of animals</entry><entry namest="col3" nameend="col3" align="left">Macroscopic</entry><entry namest="col4" nameend="col4" align="left">Microscopic</entry><entry namest="col5" nameend="col5" align="left">Tumor Free</entry></row></thead><tbody valign="top"><row rowsep="0"><entry namest="col1" nameend="col1" align="left">Saline</entry><entry namest="col2" nameend="col2" align="left">10</entry><entry namest="col3" nameend="col3" align="left">8</entry><entry namest="col4" nameend="col4" align="left">1</entry><entry namest="col5" nameend="col5" align="left">1</entry></row><row rowsep="1"><entry namest="col1" nameend="col1" align="left">Phenylacetate</entry><entry namest="col2" nameend="col2" align="left">15</entry><entry namest="col3" nameend="col3" align="left">3</entry><entry namest="col4" nameend="col4" align="left">4</entry><entry namest="col5" nameend="col5" align="left">8</entry></row></tbody></tgroup><tgroup cols="5" colsep="0" rowsep="0"><colspec colnum="1" colname="col1" colwidth="31.50mm" /><colspec colnum="2" colname="col2" colwidth="31.50mm" /><colspec colnum="3" colname="col3" colwidth="31.50mm" /><colspec colnum="4" colname="col4" colwidth="31.50mm" /><colspec colnum="5" colname="col5" colwidth="31.50mm" /><tbody valign="top"><row><entry namest="col1" nameend="col5" align="justify">¹ Fisher 344 rats received a stereotaxic inoculation of syngeneic 9L gliosarcoma cells into the deep white matter of the right cerebral hemisphere, as described in Material and Methods. Animals were then subjected to two weeks of continuous treatment with either sodium phenylacetate (550 mg/kg/day, s.c.) or saline, using osmotic minipumps transplanted subcutaneously.</entry></row><row><entry namest="col1" nameend="col5" align="justify">² Animals were sacrificed 23 days after tumor inoculation to determine antitumor effects. Findings were confirmed by histological evaluation of the inoculated site.</entry></row></tbody></tgroup></table></tables><b>Summary and Prospective</b>. Phenylacetate has long been implicated in damage to the developing fetal brain. As primary CNS tumors are highly reminiscent of immature fetal brain, malignant gliomas should be equally vulnerable. Moreover, viewing maternal PKU syndrome as a natural human model, phenylacetate would be expected to suppress the growth of brain neoplasms without harming normal tissues. Experimental data supports this hypothesis. Phenylacetate induced selective cytostasis and promoted maturation of glioma cells <u>in vitro</u> and <u>in vivo</u>. Premature growth arrest and differentiation could also underlie the damage to fetal brain in PKU. Multiple mechanisms of action are involved, including inhibition of protein isoprenylation and depletion of plasma glutamine in humans. The demonstrable antitumor activity, lack of toxicity, and ease of administration (oral or intravenous), demonstrate the clinical efficacy of phenylacetate in management of malignant gliomas, and perhaps of other neoplasms as well. Previously, phenylacetate showed activity in prostate cancer <u>in vitro</u>. Phase I clinical studies with phenylacetate in the treatment of adults with cancer confirmed that therapeutic levels can be achieved in the plasma and cerebrospinal fluid with no significant toxicities, and provide preliminary evidence for benefit to prostatic carcinoma and glioblastoma patients.

0061Phenylacetate was used to treat human solid tumors, including prostatic carcinoma, glioblastomas, and malignant melenoma. Treatment resulted in selective cytostasis and phenotypic reversion, as indicated by the restored anchorage-dependence, reduced invasiveness and loss of tumorigenicity in athymic mice. Molecular analysis of brain and hormone-refractory prostate cancer cells revealed marked decline in the production and secretion of TGFβ, a protein implicated in growth control, angiogenesis, and immunosuppression. Treated prostatic cells exhibited decreased proteolytic activity mediated by urokinase-plasminogen activator, a molecular marker of disease progression in man.

<u>EXAMPLE 2</u>

:

Growth arrest, tumor maturation, and extended survival in brain tumors

treated with NaPA

In Vitro Studies

.

0062<b>Cell proliferation</b>. The effect ofNaPA on cell proliferation was evaluated using tritiatedthymidine incorporation assay on cultured 9L gliosarcoma cells and cell enumeration using a hemocytometer following detachment with trypsin/EDTA 9L is a syngeneic malignant glial tumor derived from Fischer 344 rats and is associated with 100% mortality within three to four weeks after intracerebral inoculation [Weizsaecker M, Deen DF, Rosenblum ML, et al. The 9L rat brain tumor: description and application of an animal model. <u>J Neuol.</u> 1981; 224: 183-192]. Tumor cells were plated at 5 x 10⁴ tumor cells/well in 24-well plates (Costar, Cambridge, MA) in Dulbecco Modified Eagle's medium (DMEM) with 10% fetal bovine serum (Hyclone Laboratories Inc., Logan, UT), 2 mM L-glutamine (GIBCO BRL, Gaithersburg, MD), 50 U/ml penicillin (GIBCO) and 50 µg/ml streptomycin (GIBCO) and 2.5 µg/ml Fungizone (ICN Biomedicals Inc., Costa Mesa, CA). After 24 hours, the medium was changed and NaPA (Elan Pharmaceutical Research Corp., Gainesville, GA) added to the medium at 0, 2.5, 5, and 10 mM concentration for 5 days. Six hours before harvest, 0.5 mCi tritiatedthymidine (ICN Radiochemicals, Irvine, CA) was added to each well. Thymidine incorporation was determined by scintillation counting in triplicates. <b>Colony formation in semi-solid agar</b>. Anchorage independent growth (the ability of cells to form colonies in semi-solid agar) is characteristic of malignant glial cells. 9L cells were harvested with trypsin/EDTA and resuspended at 1.0 X 10⁴ cells/ml in growth medium containing 0.36% agar (Difco). Two ml of the cell suspension was added to 60 mm plates (Costar, Cambridge, MA) which were precoated with 4 ml of solid agar (0.9%). Phenylacetate was added to the agar at different concentrations (0, 1.25, 2.5, and 5 mM). In a second experiment. 9L cells were grown for 7 days in tissue culture containing 5 mM NaPA The cells were then transferred, as described, to agar plates without NaPA. Colonies composed of 30 or more cells were counted after 3 weeks. <b>9L brain tumor inoculation and phenylacetate administration</b>. Fisher 344 rats (n = 50) weighing 230-350 grams were anesthetized using intraperitoneal (i.p.) Ketamine (90 mg/Kg, Fort Dodge Laboratories, Inc., Fort Dodge, Iowa) and Xylazine (10 mg/Kg, Mobay Corporation, Shawnee, Kansas) and placed in a steriotaxic apparatus (David Kopf Instruments, Tujunga, California). 4x10⁴ syngeneic 9L gliosarcoma cells in 5µL (Hank's) balanced salt solution were injected into the deep white matter (depth of inoculation - 3.5 mm) of the right cerebral hemisphere using a 10 µL Hamilton syringe connected to the manipulating arm of the sterotaxic apparatus. In 10 rats, phenylacetate was administered by continuous subcutaneous (s.c.) release of the drug using two 2ML2 osmotic pumps release rate of 5 µl/hr for 14 days (Alza Corporation, Palo Alto, CA). On the day of tumor inoculation the pumps were implanted in the subcutaneous tissue of both flanks. The concentration of the drug in the pumps was 650 mg/ml (total of 2600 mg for both pumps) for a daily dose of 550 mg/kg per rat. The minipumps were replaced after 14 days for a total treatment of 28 days. Fifteen additional rats received NaPA, as described, starting 7 days after intracerebral inoculation of the tumor. In these rats, an additional daily injection of NaPA (300 mg/kg, i.p.) was given for 28 days. Control rats (n = 25) received continuous saline from two s.c. 2ML2 osmotic pumps. Perioperative penicillin (100,000 u/kg, i.m.) was given to all rats before implantation of the minipumps. Survival was recorded in each group. Three rats treated for established tumors and two control rats were sacrificed 7 days after initiation of NaPA (14 days after tumor inoculation). These were used for electron microscopic studies of treated tumors, <u>in vivo</u> proliferation assays, and measurement of NaPA levels in the serum and CSF. Peripheral organs (heart, lung, spleen, liver, kidney, bowel, adrenal, and gonads) were harvested and subjected for a routine histological examination. Brain specimens were sectioned and stained for routine hematoxylin and eosin (H&amp;E) and myelin stains (Luxol-fast blue) for evidence of drug-related toxicity. <b>Electron microscopy</b>. Animals were sacrificed by intracardiac perfusion with 1% paraformaldehyde and 2.5% gluteraldehyde in 0.1 M sodium cacodylate buffer at pH 7.4. Two hours later the fixed brains were washed in buffer and sliced into 1 mm thick coronal sections. The areas containing tumors were further dissected into 1 mm³ cubes, post-fixed with 2% osmium tetroxide in 0.1 M sodium cacodylate buffer for 2 hours, washed in buffer, mordanted <i>en block</i> with 1% uranyl acetate at pH 5 overnight, then washed, dehydrated and embedded in Epon. Thin sections were cut at several levels into each block to ensure greater sampling. Electron micrographs of tumor cells were taken at random for morphology. <b>In vivo proliferation assay</b>. One NaPA-treated and one saline-treated rat received an i.p. injection of 9 mg/3 ml of BrdU (Amersham, Illinois) 14 days after tumor inoculation and 7 days after initiation of treatment. Two hours later the rats were sacrificed and the brains were removed and sectioned. Mouse anti-BrdU monoclonal antibodies were used for immunostaining of the tissues which were then counterstained with hematoxylin. Tumor cells in 10 high-power fields were enumerated in each tumor specimen and the percent of positively staining cells (indicating incorporation of BrdU during active cell division) was recorded. <b>Measurement of NaPA levels in serum and CSF.</b> Three NaPA-treated and 2 saline-treated rats were sacrificed after 7 days of combined s.c. and i.p. NaPA or saline administration. Blood was drawn from the heart and CSF was aspirated from the cisterna magna. Due to volume limitations of CSF, pooled serum and CSF samples were assessed in a similar fashion. Protein extraction of a 200 µl aliquot of biological fluid was carried out with 100 µl of a 10% perchloric acid solution. 150 µl of supernate was neutralized with 25 µl of 20% potassium bicarbonate and centrifuged. 125 µl of supernate was then pipetted into sampling tubes. Chromatography was performed on a Gilson 715 HPLC system using a 30 cm Waters C18 column (i.d. 3.9 mm) at 60°C. A 75 µl injectate was eluted with an acetonitrile/water gradient ranging from 5 to 30% over 20 minutes and flowing at 1 ml/min. UV-monitoring was performed at a wavelength of 20 nm. Elution time for phenylacetate was 14.8 minutes. <b>Statistical analysis</b>. The Chi-square test was used to compare proportions of BrdU-positive cells. The Mantel-Haenzel test was used to compare survival between NaPA-treated and saline-treated rats in the survival experiments.

In Vitro Results

0063<b>In vitro Effect of NaPA on cell proliferation and anchorage dependency</b>. Treatment of 9L cells with NaPA for 5 days resulted in dose-dependent decrease in cell number with IC₅₀ at 6.0 ± 0.5 mM. This was accompanied with a decrease in tritiatedthymidine incorporation. In addition, phenylacetate induced a dose-dependent restoration of anchorage dependency, indicating a reversion of the malignant phenotype (Table 3). 9L cells that were exposed to NaPA for 7 days before plating in agar (not containing NaPA) still showed > 40% inhibition in colony formation (Table 3). <tables id="tabl0003" num="0003"><table frame="all"><title>Table 3:</title><tgroup cols="4" colsep="1" rowsep="1"><colspec colnum="1" colname="col1" colwidth="39.37mm" /><colspec colnum="2" colname="col2" colwidth="39.37mm" /><colspec colnum="3" colname="col3" colwidth="39.37mm" /><colspec colnum="4" colname="col4" colwidth="39.37mm" /><thead valign="top"><row><entry namest="col1" nameend="col4" align="center">Phenylacetate Inhibits Anchorage-Independent Growth of 9L Gliosarcoma Cells</entry></row><row><entry namest="col1" nameend="col1" rowsep="0" align="center">Treatment in Culture</entry><entry namest="col2" nameend="col2" rowsep="0" align="center">PA in Agar (mM)</entry><entry namest="col3" nameend="col4" align="center">Colony Formation</entry></row><row><entry namest="col1" nameend="col1" /><entry namest="col2" nameend="col2" /><entry namest="col3" nameend="col3" align="center"># Colonies</entry><entry namest="col4" nameend="col4" align="center">% Inhibition</entry></row></thead><tbody valign="top"><row rowsep="0"><entry namest="col1" nameend="col1" align="left">none</entry><entry namest="col2" nameend="col2" align="left">0</entry><entry namest="col3" nameend="col3" align="left">628 ± 50</entry><entry namest="col4" nameend="col4" align="left">-</entry></row><row rowsep="0"><entry namest="col1" nameend="col1" align="left">none</entry><entry namest="col2" nameend="col2" align="left">5</entry><entry namest="col3" nameend="col3" align="left">8 ± 4</entry><entry namest="col4" nameend="col4" align="left">98.7</entry></row><row rowsep="0"><entry namest="col1" nameend="col1" /><entry namest="col2" nameend="col2" align="left">2.5</entry><entry namest="col3" nameend="col3" align="left">111 ± 13</entry><entry namest="col4" nameend="col4" align="left">82.4</entry></row><row><entry namest="col1" nameend="col1" /><entry namest="col2" nameend="col2" align="left">1.25</entry><entry namest="col3" nameend="col3" align="left">326 ± 20</entry><entry namest="col4" nameend="col4" align="left">48.0</entry></row><row rowsep="1"><entry namest="col1" nameend="col1" align="left">^aPhenylacetate 0</entry><entry namest="col2" nameend="col2" /><entry namest="col3" nameend="col3" align="left">375±25</entry><entry namest="col4" nameend="col4" align="left">40.3</entry></row></tbody></tgroup><tgroup cols="4" colsep="0" rowsep="0"><colspec colnum="1" colname="col1" colwidth="39.37mm" /><colspec colnum="2" colname="col2" colwidth="39.37mm" /><colspec colnum="3" colname="col3" colwidth="39.37mm" /><colspec colnum="4" colname="col4" colwidth="39.37mm" /><tbody valign="top"><row><entry namest="col1" nameend="col4" align="justify">^a9L cells were treated with 5mM phenylacetate in culture for 7 days before being plated on soft agar.</entry></row></tbody></tgroup></table></tables>

In vivo Studies

0064<b>In vivo prolifention assay and electron microscopy findings.</b> Treatment of established brain tumors with NaPA resulted in a significant decrease in the rate of proliferation. 285 of 1283 treated tumor cells stained for BrdU compared to 429 of 1347 saline-treated tumor cells (mitotic index of 0.22 in NaPA-treated vs. 0.33 in saline-treated tumors; p &lt; 0.0001).

0065Electron microscopy of these tumors showed a striking abundance of well-organized rough endoplasmic reticulum in the NaPA-treated tumor cells, indicating a higher degree of cell differentiation [Ghadially FN. Endoplasmic reticulum and ribosomes in cell differentiation and neoplasia. In: eds. <u>Ultrastructural Pathology of the Cell and Matrix</u>.Third, London:Buttorworths; 1992:450-454]. By contrast, untreated tumors generally had scant rough endoplasmic reticulum and numerous polyribosomes, which are characteristics of highly malignant cells. In addition, mitotic cells were more frequently found in untreated tumors. <b>Serum and CSF levels of NaPA</b>. Assays of pooled serum and CSF from 3 treated and 2 control rats, obtained after 7 days of combined s.c. and i.p. NaPA (total daily dose of 850 mg/kg) or saline administration, revealed a mean phenylacetate level of 2.45 mM in the serum and 3.1 mM in the CSF. No phenylacetate was detected in the serum of CSF samples from saline-treated rats.

Survival Experiments

0066<b>Simultaneous tumor inoculation and administration of NaPA</b>. Seven of 10 NaPA-treated rats survived for > 90 days alter tumor inoculation when NaPA was administered for 4 weeks starting on the day of tumor inoculation. Nine of 10 control rats died within 34 days after tumor inoculation (p < 0.01, Mantel-Haenzel test). <b>Treatment of established tumors with NaPA</b>. Five of 12 rats treated with s.c. and i.p. NaPA for 4 weeks (starting 7 days after tumor inoculation) are still alive 50 days after tumor inoculation, while 12 of 13 saline-treated rats died by day 36 (p < 0.03, Mantel-Haenzel test). <b>Toxicity</b>. No adverse effects of NaPA treatment were detected in any treated rats. Histological evaluation of the major peripheral organs and non-tumoral brain showed no abnormalities. <b>Discussion</b>. Phenylacetate induced a potent cytostatic and antitumor effect in the in vitro and in vivo brain tumor models used in these studies. This effect extended beyond the duration of drug administration, indicated by the long-term survival and apparent cure of rats which received NaPA either simultaneously with tumor inoculation or after tumors were established. This extended effect of NaPA shows that the malignant phenotype of treated tumor cells reverted, perhaps irreversibly in some animals, to one that was more benign and differentiated. Anchorage independence, i.e., the ability of cells to form colonies in semi-solid agar, is characteristic of malignant glioma cells. Phenylacetate caused a dose-dependent restoration of anchorage dependency, indicating reversion of the glioma cells to a non-malignant phenotype. More than 80% inhibition of colony formation was achieved at NaPA concentration in the agar plate of 2.5 mM, similar to the serum and CSF levels measured in treated rats. In addition, after one week of exposure to NaPA, more than 40% of tumor cells maintained a benign growth pattern despite the absence of NaPA in the agar plates (Table 3). A significant <u>in vivo</u> indicator of cell differentiation was observed in our study in the subcellular organelles of treated brain tumor cells. The disorganized cytoplasmic polyribosomes in the saline-treated tumor cells were transformed by NaPA to a hyperplastic, well organized, rough endoplasmic reticulum. The endoplasmic reticulum is a highly specialized structure that performs many distinct functions. Hence a well-developed endoplasmic reticulum represents cell differentiation and functional activity. An inverse relationship has been noted between the amount of rough endoplasmic reticulum and the growth rate and degree of malignancy of tumors [Ghadially FN. Diagnostic Electron Microscopy of Tumours. eds. 2. London:Butterworth; 1985]. The numerous polyribosomes in the untreated tumor cells correlated well with the number of mitoses seen by light microscopy and were confirmed by the BrdU proliferation assay. These changes underscore the differentiating effect of NaPA on the malignant glial cells and correlate with the <u>in vivo</u> decrease in cell proliferation and extended survival that occurred in treated animals with brain tumors.

0067Therapeutic blood and CSF NaPA levels were reached in the treated rats. The high CSF levels indicate good penetration of NaPA into the central nervous system and into the developing tumor. The doses used are well below the known toxic levels of NaPA in children with inborn errors of urea synthesis (2.5 g/kg/d) or rats (1.6 g/kg/d) and indicate that NaPA can be given safely at a higher doses, possibly with enhancement of antitumor efficacy. These data indicate that phenylacetate, given to rats at a non-toxic dose, has a profound effect on tumor growth regulation and cell maturation.

EXAMPLE 3

: Suppression of 5-Aza-2'-deoxycytidine induced carcinogenesis

0068Differentiation inducers selected for their low cytotoxic and genotoxic potential could be of major value in chemoprevention and maintenance therapy. Specifically, the ability of phenylacetate to prevent carcinogenesis by the chemotherapeutic hypomethylating drug, 5-aza-2'-deoxycytidine (5AzadC), was tested <u>in vitro</u> and in mice. Transient exposure of immortalized, but non-tumorigenic <u>ras</u>-transformed 4C8 fibroblasts to 5AzadC resulted in neoplastic transformation manifested by loss of contact inhibition of growth, acquired invasiveness, and tumorigenicity in athymic mice. The latter was associated with increased <u>ras</u> expression and a decline in collagen biosynthesis. These profound phenotypic and molecular changes were prevented by a simultaneous treatment with phenylacetate. Protection from 5AzadC carcinogenesis by phenylacetate was: (a) highly efficient despite DNA hypomethylation by both drugs; (b) free of cytotoxic and genotoxic effects; (c) stable after treatment was discontinued, and; (d) reproducible <u>in vivo</u>. Whereas athymic mice bearing 4C8 cells developed fibrosarcomas following a single i.p. infection with 5AzadC, tumor development was significantly inhibited by systemic treatment with nontoxic doses of phenytacetate. Phenylacetate and its precursor suitable for oral administration, phenylbutyrate, may thus represent a new class of chemopreventive agents, the efficacy and safety of which should be further evaluated.

0069The multi-step nature of neoplastic transformation makes this disease process amendable to chemopreventive intervention. Several agents have been shown to inhibit carcinogenesis and thereby prevent the development of primary or secondary cancers [Kelloff, G.J., C.W. Boone, W.F., Malone, and V.E. Steele. 1992. Chemoprevention clinical trials. <u>Mutation Res.</u>, <b>267</b>: 291-295; Weinstein, B.L 1991. Cancer prevention: Recent progress and future opportunities. <u>Cancer Res.</u>, 51:5080s-5085s; Wattenberg, L.W. Inhibition of carcinogenesis by naturally occurring and synthetic compounds. In: Y. Kuroda, D.M. Shankel and M.D. Waters (eds), Antimutagenesis and Anticarcinogenesis, Mechanisms II, pp.155-166. New York: Plenum Publishing Corp., 1990; Sporn, M.B., and D.L. Newton. 1979. Chemoprevention of cancer and retinoids. <u>Fed. Proc.</u> 38:2528-2534]. Of major interest are natural products and their analogs, including vitamins (A, B12, C, D3, and E), retinoids, and terpenes. These agents can suppress neoplastic transformation subsequent to a carcinogenic insult by regulating cell growth and differentiation. One such growth regulator is phenylacetate.

0070The efficacy of phenylacetate as a chemopreventive agent was tested using in <u>vitro</u> and <u>in vivo</u> models of 5AzadC-induced carcinogenesis. Despite the promise of 5AzadC in the treatment of cancer and of beta-chain hemoglobinopathies, its clinical applications have been hindered by concerns regarding carcinogenic potential. The model used in the present studies involved premalignant murine fibroblasts (cell lines 4C8 and PR4), which express a transcriptionally activated c-Ha-<u>ras</u> protooncogene. These non-tumorigenic cells are highly susceptible to malignant conversion by pharmacological doses of 5AzadC. However, Phenylacetate can protect such vulnerable cells from 5AzadC-induced carcinogenesis both in culture and in mice. <b>Cell Cultures and Reagents.</b> The subclones of mouse NIH 3T3 fibroblasts, PR4N and 4C8-A10 (designated here PR4 and 4C8) have been previously described [Wilson, V.L., R.A. Smith, H. Autrup, H. Krokan, D.E. Musci, N-N-T. Le, J. Longoria, D. Ziska, and C.C. Harris. 1986. Genomic 5-methylcytosine determination by ³²P-postlabeling analysis. <u>Anal. Biochem.</u>, 152:275-284; Dugaiczyk, A., J.J. Haron, E.M. Ston, O.E. Dennison, K.N. Rothblum, and R.J. Schwartz. 1983. Cloning and sequencing of a deoxyribonucleic acid copy of glyceraldehyde-3-phosphate dehydrogenase messenger ribonucleic acid isolated from chicken muscle. <u>Biochem.</u> 22:1605-1613]. Both cell lines are phenotypic revertants isolated from LTR/c-Ha-<u>ras</u>1-transformed 3T3 cells after long-term treatment with murine interferon α/β. Cultures were maintained in Dulbecco's modified Eagle's medium (DMEM) supplemented with 10% heat inactivated fetal calf serum (Gibco) and antibiotics. The sodium salts of phenylacetic and phenylbutyric acids (Elan Pharmaceutical Corporation) were dissolved in distilled water. 5AzadC (Sigma St. Louis MO) was dissolved in phosphate buffered saline (PBS) and stored in aliquots at -20°C until use. Exposure of 5AzadC to direct light was avoided at all times to prevent drug hydrolysis. <b>Treatments with 5AzadC</b>. For treatment in culture, cells were plated at 1 - 2x10⁵ cells in 100 mm dishes and the drugs added to the growth medium at 20 and 48 hrs later. The cells were subsequently subcultured in the absence of the nucleoside analogs and observed for phenotypic alterations. For <u>in vivo</u> treatment with 5AzadC, 6-9 week-old female athymic nude mice (Division of Cancer Treatment, NCI Animal Program, Frederick Cancer Research Facility) were inoculated subcutaneously (s.c.) with 0.5 x 10⁶ cells. Twenty four hours later 400 µg of freshly prepared 5AzadC in 200 µl of PBS was administered intraperitoneally (i.p.) into each animal (approximately 20 mg/kg). Systemic treatment with NaPA is described in the text. <b>Growth on Matrigel</b>. The ability of cells to degrade and cross tissue barriers was assessed by a qualitative <u>in vitro</u> invasion assay that utilize matrigel, a reconstituted basement membrane (Collaborative Research). Cells were exposed for 48 hrs in T.C. plastic dishes with 5AzadC alone or in combination with NaPA. NaPA treatment continued for additional 1-2 weeks. Cells were then replated (at 5 x 10⁴ per point) onto 16 mm dishes (Costar, Cambridge, MA), which were previously coated with 250 µl of matrigel (10 mg/ml). NaPA was either added to the dishes or omitted in order to determine the reversibility of effect. Net-like formation characteristic of invasive cells occurred within 12 hours; invasion into the matrigel was evident after 6-9 days. <b>Tumor Formation in Athymic Mice</b>. Cells were injected s.c. (5x10⁵ cells per site) into 4-6 week old female athymic nude mice (Division of Cancer Treatment, NCI animal Program, Frederick Cancer Research Facility). The number, size, and weight of tumors were recorded after 3-4 weeks. For histological examination, tumors were excised, fixed in Bouin's solution (picric acid: 37% formaldehyde: glacial acetic acid, 15:5:1 vol/vol), and stained with H&amp;E. <b>Measurement of DNA Methylation</b>. To determine the 5-methylcytosine content, samples of cultures were taken 24 hours after the second 5AzadC treatment. The cell pellets were lysed in 0.5% SDS, 0.1M NaCl, 10mM EDTA pH 8.0, added with 400 µg/ml of proteinase K (Boehringer Mannheim), and stored at -70°C until DNA isolation and analysis. The content of methylated/unmethylated cytosine residues in the cellular DNA was measured by a ³²P-postlabeling technique as previously described. <b>Northern Blot Analysis and DNA Probes</b>. Cytoplasmic RNA was extracted from exponentially growing cells and separated by electrophoresis in 1.2% agarose-formaldehyde gels. RNA preparation, blotting onto nylon membranes (Schleicher and Schuell), hybridization with radiolabeled DNA probes, and autoradiography were performed as described [Rimoldi, D., V. Srikantan, V.L.Wilson, R.H. Bassin, and D. Samid. 1991. Increased sensitivity of nontumorigenic fibroblasts expressing <i>ras</i> or <i>myc</i> oncogenes to malignant transformation induced by 5-aza-2'-deoxycytidine. <u>Cancer Res.</u>, 51:324-330]. The DNA probes included: 6.2 kb EcoRI fragment of v-Ki-<u>ras</u>, 2.9kb SacI fragment of the human c-Ha-<u>ras</u>1 gene, and a BamHI 4.5 kb fragment of the c-<u>myc</u> gene. Glyceraldehyde phosphate dehydrogenase cDNA[Dugaiczyk, A., J.J. Haron, E.M. Ston, O.E. Dennison, K.N. Rothblum, and R.J. Schwartz. 1983. Cloning and sequencing of a deoxyribonucleic acid copy of glyceraldehyde-3-phosphate dehydrogenase messenger ribonucleic add isolated from chicken muscle. <u>Biochem.</u> 22:1605-1613] was provided by M.A. Tainsky (University of Texas, Houston), and a mouse transin cDNA by G.T. Bowden (University of Arizona, Tucson). The cDNA probe for mouse histocompatibility class I antigens was a gift from G. Jay (NTH, Bethesda). Radiolabeled probes were prepared with [³²P]dCTP (NEN) using a random primed DNA labeling kit (Boehringer Mannheim, Germany). <b>In Vitro Carcinogenesis Induced by 5AzadC and Its Prevention by Phenylacetate</b>. Untreated 4C8 and PR4 formed contact-inhibited monolayers composed of epithelial-like cells. In agreement with previous observations, transient exposure of these cultures to 0.1 uM 5AzadC during logarithmic phase of growth resulted in rapid and massive neoplastic transformation. Within one week of 5AzadC treatment, the great majority of the cell population became refractile and spindly in shape, and formed multilayered cultures with increased saturation densities (Table 4), indicative of loss of contact inhibition of growth. These phenotypic changes could be prevented by the addition of 5-10 mM NaPA (Table 4). Several different regimens of NaPA treatment were found to be similarly effective. These included: (a) pre-treatment with NaPA, starting one day prior to the addition of 5AzadC; (b) simultaneous exposure to both drugs, and; (c) addition of NaPA one day after 5AzadC. In all cases, cells were subsequently subjected to continuous treatment with NaPA for at least one week. Cells cultured under these conditions, like those treated with NaPA alone, formed contact-inhibited monolayers resembling untreated controls. These cells maintained the benign growth pattern for at least three weeks after NaPA treatment was discontinued.

0071That NaPA prevents neoplastic transformation was further indicated by the inability of cells to invade reconstituted basement membranes (matrigel), and form tumors in athymic mice. When plated onto matrigel, 5AzadC-transformed 4C8 and PR4 cells developed net-like structures characteristic of highly malignant cells, and eventually degraded the extracellular matrix components. In marked contrast, NaPA-treated cultures formed small, non-invasive colonies on top of the matrigel, as previously observed with normal fibroblasts. Untreated parental cells exhibited an intermediate phenotype, as their colonies were slow growing and non-invasive, yet irregular in shape possibly due to increased cell motility. The chemopreventive effect of phenylacetate could be mimicked by its precursor, phenylbutyrate. Cells exposed to SAzadC in the presence of sodium phenylbutyrate (NaPB, 1.5-3 mM) maintained contact inhibited growth and exhibited a benign phenotype when placed onto matrigel (Table 4). <tables id="tabl0004" num="0004"><table frame="all"><title>Table 4:</title><tgroup cols="4" colsep="1" rowsep="0"><colspec colnum="1" colname="col1" colwidth="39.37mm" /><colspec colnum="2" colname="col2" colwidth="39.37mm" /><colspec colnum="3" colname="col3" colwidth="39.37mm" /><colspec colnum="4" colname="col4" colwidth="39.37mm" /><thead valign="top"><row rowsep="1"><entry namest="col1" nameend="col4" align="center">Effect of 5 AzadC and NaPA on DNA Methylation</entry></row><row rowsep="1"><entry namest="col1" nameend="col2" /><entry namest="col3" nameend="col4" align="center">DNA Methylation</entry></row><row rowsep="1"><entry namest="col1" nameend="col1" align="left">Cells</entry><entry namest="col2" nameend="col2" align="left">Treatment^a</entry><entry namest="col3" nameend="col3" align="left">% 5mC^b</entry><entry namest="col4" nameend="col4" align="left">% of Control</entry></row></thead><tbody valign="top"><row><entry namest="col1" nameend="col1" morerows="3" align="left">4C8</entry><entry namest="col2" nameend="col2" align="left">none</entry><entry namest="col3" nameend="col3" align="left">3.49±0.06</entry><entry namest="col4" nameend="col4" align="center">100</entry></row><row><entry namest="col2" nameend="col2" align="left">5AzadC</entry><entry namest="col3" nameend="col3" align="left">1.52±0.27</entry><entry namest="col4" nameend="col4" align="center">43</entry></row><row><entry namest="col2" nameend="col2" align="left">NaPA</entry><entry namest="col3" nameend="col3" align="left">2.22±0.10</entry><entry namest="col4" nameend="col4" align="center">63</entry></row><row><entry namest="col2" nameend="col2" align="left">SAzadC + NaPA</entry><entry namest="col3" nameend="col3" align="left">1.62±0.18</entry><entry namest="col4" nameend="col4" align="center">46</entry></row><row><entry namest="col1" nameend="col1" morerows="3" rowsep="1" align="left">PR4</entry><entry namest="col2" nameend="col2" align="left">none</entry><entry namest="col3" nameend="col3" align="left">2.72±0.16</entry><entry namest="col4" nameend="col4" align="center">100</entry></row><row><entry namest="col2" nameend="col2" align="left">5AzadC</entry><entry namest="col3" nameend="col3" align="left">1.11±0.22</entry><entry namest="col4" nameend="col4" align="center">41</entry></row><row><entry namest="col2" nameend="col2" align="left">NaPA</entry><entry namest="col3" nameend="col3" align="left">1.25±0.08</entry><entry namest="col4" nameend="col4" align="center">46</entry></row><row rowsep="1"><entry namest="col2" nameend="col2" align="left">5AzadC + NaPA</entry><entry namest="col3" nameend="col3" align="left">1.06±0.11</entry><entry namest="col4" nameend="col4" align="center">39</entry></row></tbody></tgroup><tgroup cols="4" colsep="0" rowsep="0"><colspec colnum="1" colname="col1" colwidth="39.37mm" /><colspec colnum="2" colname="col2" colwidth="39.37mm" /><colspec colnum="3" colname="col3" colwidth="39.37mm" /><colspec colnum="4" colname="col4" colwidth="39.37mm" /><tbody valign="top"><row><entry namest="col1" nameend="col4" align="justify">^a   Cells were treated with 0.1 uM 5AzadC and/or 10 mM NaPA and the percentage of 5mC was determined as described in "Materials and Methods".</entry></row><row><entry namest="col1" nameend="col4" align="justify">^b   Data indicate the mean ± S.D. (n=4) of two experiments.</entry></row></tbody></tgroup></table></tables>

0072The <u>in vitro</u> growth characteristics of cells correlated with their behavior in athymic mice. 5AzadC-treated 4C8 cells developed rapidly growing fibrosarcomas within 2 weeks of s.c. transplantation into mice. Consistent with their behavior <u>in vitro</u>, the parental cells were far less aggressive, forming small lesions after 3-4 weeks in three of eight recipient animals. However, no tumors developed in animals injected with 4C8 cells that had been pre-treated for one week in culture with the combination of 5AzadC and NaPA (Table 4). There was also no tumor formation in mice injected with 4C8 treated with NaPA alone. Therefore it follows that NaPA induced phenotypic reversion of the premalignant fibroblasts and prevented their malignant conversion by the cytosine analog. <b>Modulation of Gene Expression by NaPA</b>. The NIH 3T3-derived cells lines, 4C8 and PR4, carry an LTR-activated c-Ha-<u>ras</u> protooncogene. Northern blot analysis of 5AzadC-treated 4C8 revealed a significant increase in <u>ras</u> mRNA levels and a decline in the differentiation marker, collagen α (type I) transcripts. No such changes in gene expression occurred in cultures to which NaPA was added. Withdrawal of NaPA after one week of continuous treatment did not cause restoration of <u>ras</u> expression, confirming that the therapeutic benefit of NaPA is stable in the absence of further treatment. <b>Effect of Phenylacetate and 5AzadC on DNA methylation.</b> 5AzadC is a potent inhibitor of DNA methylation, an epigenetic mechanism implicated in the control of gene expression and cell phenotype. Hypomethylation may underlay the therapeutic effect of 5AzadC in cancer and in severe inborn anemias [Momparler, R.L., G.E. Rivard, and M. Gyger. 1985. Clinical trial on 5-aza-2'-deoxycytidine in patients with acute leukemia. <u>Pharmac. Ther.</u>, 30:277-286; Stamatoyannopoulos, J.A., and A.W. Nienhuis. 1992. Therapeutic approaches to hemoglobin switching in treatment of hemoglobinopathies. <u>Annu. Rev. Med.</u>, 43:497-521; Ley, T.J., J. DeSimone, N.P. Anagnou, G.H. Keller, R.K. Humphries, P.H. Turner, P.H., N.S. Young, P. Heller, and A.W. Nienhuis. 1982. 5-Azacytidine selectively increases gamma-globin synthesis in a patient with beta⁺ thalassemia. <u>N. Engl. J. Med.</u> 307:1469-1475]. However, changes in DNA methylation could also be responsible for its carcinogenic potential. It was of interest therefore to determine the degree of DNA methylation in cells protected by phenylacetate. As would be expected, 5AzadC caused a significant decrease in the content of 5-methylcytosine (5mC) (Table 5). There was, however, a comparable decline in 5mC in cells treated with 5AzadC in combination with NaPA, as well as in those treated with NaPA alone (Table 5). <tables id="tabl0005" num="0005"><table frame="all"><title>Table 5.</title><tgroup cols="5" colsep="1" rowsep="0"><colspec colnum="1" colname="col1" colwidth="31.50mm" /><colspec colnum="2" colname="col2" colwidth="31.50mm" /><colspec colnum="3" colname="col3" colwidth="31.50mm" /><colspec colnum="4" colname="col4" colwidth="31.50mm" /><colspec colnum="5" colname="col5" colwidth="31.50mm" /><thead valign="top"><row rowsep="1"><entry namest="col1" nameend="col5" align="center"><u>In vitro</u> Prevention by Phenylacetate of 5AzadC-Induced Carcinogenesis</entry></row><row rowsep="1"><entry namest="col1" nameend="col1" rowsep="0" align="center">Cell Treatment</entry><entry namest="col2" nameend="col2" rowsep="0" align="center">Saturation Density^a (cells/cm²x10^-5)</entry><entry namest="col3" nameend="col3" rowsep="0" align="center">Invasiveness^b</entry><entry namest="col4" nameend="col5" align="center">Tumorigenicity in Mice^c</entry></row><row rowsep="1"><entry namest="col1" nameend="col1" /><entry namest="col2" nameend="col2" /><entry namest="col3" nameend="col3" /><entry namest="col4" nameend="col4" align="center">Incidence</entry><entry namest="col5" nameend="col5" align="center">Tumor Size (mm)</entry></row></thead><tbody valign="top"><row><entry namest="col1" nameend="col1" align="left">None</entry><entry namest="col2" nameend="col2" align="left">3.9</entry><entry namest="col3" nameend="col3" align="left">-</entry><entry namest="col4" nameend="col4" align="left">3/8</entry><entry namest="col5" nameend="col5" align="left">1.0(0.5-2)</entry></row><row><entry namest="col1" nameend="col1" align="left">5AzadC</entry><entry namest="col2" nameend="col2" align="left">7.0</entry><entry namest="col3" nameend="col3" align="left">+</entry><entry namest="col4" nameend="col4" align="left">8/8</entry><entry namest="col5" nameend="col5" align="left">11.5 (4-19)</entry></row><row><entry namest="col1" nameend="col1" align="left">5AzadC + NaPA</entry><entry namest="col2" nameend="col2" align="left">1.6</entry><entry namest="col3" nameend="col3" align="left">-</entry><entry namest="col4" nameend="col4" align="left">0/8</entry><entry namest="col5" nameend="col5" align="left">0</entry></row><row><entry namest="col1" nameend="col1" align="left">5AzadC + NaPB</entry><entry namest="col2" nameend="col2" align="left">1.1</entry><entry namest="col3" nameend="col3" align="left">-</entry><entry namest="col4" nameend="col4" align="left">ND</entry><entry namest="col5" nameend="col5" /></row><row><entry namest="col1" nameend="col1" align="left">NaPA</entry><entry namest="col2" nameend="col2" align="left">ND</entry><entry namest="col3" nameend="col3" align="left">-</entry><entry namest="col4" nameend="col4" align="left">0/8</entry><entry namest="col5" nameend="col5" align="left">0</entry></row><row rowsep="1"><entry namest="col1" nameend="col1" align="left">NaPB</entry><entry namest="col2" nameend="col2" align="left">1.3</entry><entry namest="col3" nameend="col3" align="left">-</entry><entry namest="col4" nameend="col4" align="left">ND</entry><entry namest="col5" nameend="col5" /></row></tbody></tgroup><tgroup cols="5" colsep="0" rowsep="0"><colspec colnum="1" colname="col1" colwidth="31.50mm" /><colspec colnum="2" colname="col2" colwidth="31.50mm" /><colspec colnum="3" colname="col3" colwidth="31.50mm" /><colspec colnum="4" colname="col4" colwidth="31.50mm" /><colspec colnum="5" colname="col5" colwidth="31.50mm" /><tbody valign="top"><row><entry namest="col1" nameend="col5" align="justify">^a   Cells were treated simultaneously with the indicated drugs and kept in culture for 5 days post confluency at which time they were detached and counted. Exposure to 5AzadC was transient as described in Materials and Methods, while treatment with NaPA and NaPB continued throughout the experiment. Similar results were obtained when NaPA treatment was initiated one day prior or after cell exposure to 5AzadC (data not shown).</entry></row><row><entry namest="col1" nameend="col5" align="justify">^b   Cells were plated on top of a matrigel layer and observed for malignant growth pattern, i.e., development of characteristic processes and degradation of the reconstituted basement membrane and invasion towards the plastic surface below.</entry></row><row><entry namest="col1" nameend="col5" align="justify">^c   Cells pretreated in culture were injected s.c (5 x 10⁵ cells per site) into 2 month old female athymic nude mice. Results determined after 3 weeks indicate tumor incidence (tumor bearing, injected animals) and size. The values of tumor size are mean (range). ND=not determined.</entry></row></tbody></tgroup></table></tables><b>In Vivo Chemoprevention by NaPA</b>. To determine the efficacy of NaPA <u>in vivo</u>, studies were extended to include an animal model involving athymic mice bearing the non-tumorigenic 4C8 cells transplanted subcutaneously. A single i.p. injection of mice with 5AzadC (20 mg/kg) resulted in tumor development at the site of 4C8 cell inoculation. However, when mice were pre-treated with NaPA 1.5 hr prior to 5AzadC injection, and NaPA treatment continued for 22 days thereafter, the incidence of tumor formation was significantly decreased (Table 6). There were no adverse effects associated with NaPA treatment as indicated by animal weight and behavior. Further more, despite causing DNA hypomethylation NaPA did not induce neoplastic transformation of transplanted 4C8 cells. Animals protected by NaPA either failed to develop tumors or formed slow-growing lesions at the site of 4C8 inoculation. The animal data is consistent with the <u>in vitro</u> findings, indicating that NaPA can prevent 5AzadC-induced neoplastic transformation without producing significant toxicities. <tables id="tabl0006" num="0006"><table frame="all"><title>Table 6.</title><tgroup cols="4" colsep="1" rowsep="0"><colspec colnum="1" colname="col1" colwidth="39.37mm" /><colspec colnum="2" colname="col2" colwidth="39.37mm" /><colspec colnum="3" colname="col3" colwidth="39.37mm" /><colspec colnum="4" colname="col4" colwidth="39.37mm" /><thead valign="top"><row rowsep="1"><entry namest="col1" nameend="col4" align="center"><u>In vivo</u> Chemoprevention by Phenylacetate</entry></row><row rowsep="1"><entry namest="col1" nameend="col1" rowsep="0" align="left">Group</entry><entry namest="col2" nameend="col2" rowsep="0" align="left">Animal Treatment^a</entry><entry namest="col3" nameend="col3" align="left">Tumor Incidence^b</entry><entry namest="col4" nameend="col4" align="left">Tumor Size^c</entry></row><row rowsep="1"><entry namest="col1" nameend="col1" /><entry namest="col2" nameend="col2" /><entry namest="col3" nameend="col3" align="left">positive/total</entry><entry namest="col4" nameend="col4" align="left">mean (range)</entry></row></thead><tbody valign="top"><row><entry namest="col1" nameend="col1" align="left">A</entry><entry namest="col2" nameend="col2" align="left">PBS</entry><entry namest="col3" nameend="col3" align="left">0/4</entry><entry namest="col4" nameend="col4" align="left">0</entry></row><row><entry namest="col1" nameend="col1" align="left">B</entry><entry namest="col2" nameend="col2" align="left">NaPA</entry><entry namest="col3" nameend="col3" align="left">0/4</entry><entry namest="col4" nameend="col4" align="left">0</entry></row><row><entry namest="col1" nameend="col1" align="left">C</entry><entry namest="col2" nameend="col2" align="left">5AzadC + PBS</entry><entry namest="col3" nameend="col3" align="left">9/9</entry><entry namest="col4" nameend="col4" align="left">12 (2-29)</entry></row><row rowsep="1"><entry namest="col1" nameend="col1" align="left">D</entry><entry namest="col2" nameend="col2" align="left">5AzadC + NaPA</entry><entry namest="col3" nameend="col3" align="left">4/10</entry><entry namest="col4" nameend="col4" align="left">3(0-10)</entry></row></tbody></tgroup><tgroup cols="4" colsep="0" rowsep="0"><colspec colnum="1" colname="col1" colwidth="39.37mm" /><colspec colnum="2" colname="col2" colwidth="39.37mm" /><colspec colnum="3" colname="col3" colwidth="39.37mm" /><colspec colnum="4" colname="col4" colwidth="39.37mm" /><tbody valign="top"><row><entry namest="col1" nameend="col4" align="justify">^a 4C8 cells (5x10⁵ per site) were transplanted s.c. into athymic mice. The next day, the animals in were treated i.p. with 400 mg/kg NaPA, and 1.5 hr later with 20 mg/kg 5 AzadC. NaPA treatment was repeated at 4.5 hours following 5 AzadC injection. Subsequent treatments involved NaPA injections twice daily for 8 days, and once a day for additional 2 weeks. PBS was used as a control.</entry></row><row><entry namest="col1" nameend="col4" align="justify">^b Data indicates tumor growth at 4 weeks after 5AzadC treatment. Spontaneous tumors developed thereafter in control animals receiving PBS, and subsequently in those treated with NaPA:</entry></row><row><entry namest="col1" nameend="col4" align="justify">^c Tumor diameter in millimeters.</entry></row></tbody></tgroup></table></tables>

0073There is considerable interest in the use of nontoxic differentiation inducers in cancer chemoprevention. Drug toxicity is particularly important considering the overall health condition and variable life-span of candidate populations, i.e., high-risk individuals and patients in remission. The differentiation inducer phenylacetate can prevent 5AzadC-induced carcinogenesis both <u>in vitro</u> and <u>in vivo</u> when used at nontoxic doses.

0074Chemoprevention can be accomplished by either blocking the "initiation" step of carcinogenesis (i.e., mutagenesis), or by suppressing "promotion" and progression to malignancy. The current studies, using premalignant cells with an activated <u>ras</u> oncogene as a model, examined the efficacy of phenylacetate as an anti-promotional drug. Other well characterized chemopreventive agents that block promotion include vitamin A and its synthetic retinoids; like phenylacetate, these compounds are also regulators of cell growth and differentiation.

0075The current studies exploited <u>in vitro</u> and <u>in vivo</u> models involving fibroblasts (designated 4C8 and PR4) that are highly vulnerable to malignant conversion by the DNA hypomethylating agents 5AzadC and 5AzaC (16,17). Transient exposure of these cells to 5AzadC, either in culture or in recipient athymic mice, caused rapid neoplastic transformation. Malignant conversion was associated with an increase in <u>ras</u> mRNA levels and down-regulation of collagen type I expression, indicating loss of cell differentiation. These profound biological and molecular changes brought about by 5AzadC are prevented by a simultaneous treatment with non-cytotoxic concentrations of phenylacetate and its precursor, phenylbutyrate. Phenylacetate's antitumor activity and lack of toxicity were confirmed in athymic mice. In the <u>in vivo</u> model, mice bearing the susceptible 4C8 cells transplanted s.c. were injected i.p. with 5AzadC. All mice so treated developed rapidly growing fibrosarcomas; however, the incidence of tumor formation was markedly reduced by systemic treatment with NaPA.

0076The mechanism by which NaPA prevented the 5AzadC induced malignant conversion is unclear. Like other chemopreventive agents that block promotion, phenylacetate may act by inducing cytostasis and tumor maturation. There is a growing body of evidence indicating that phenylacetate can cause selective growth arrest and tumor differentiation <u>in vitro</u> and in rodent models. In some cases, e.g., promyelocytic leukemia, differentiation induced by phenylacetate was linked to a decline in <u>myc</u> oncogene expression. In NaPA-treated 4C8, protection from de-differentiation (evidenced by growth characteristics and collagen expression), was associated with inhibition of <u>ras</u> overexpression. Down-regulation of oncogene expression may thus be responsible in part for the chemopreventive activity of NaPA. In addition to affecting <u>ras</u> at the mRNA levels, phenylacetate, an inhibitor of the mevalonate pathway of cholesterol synthesis [Castillo, M., J. Iglesias, M.F. Zafra, and E. Garcia-Peregrin. 1991. Inhibition of chick brain cholesterolgenic enzymes by phenyl and phenolic derivatives of phenylalanine. <u>Neurochem. Int.</u>, 18: 171-174], could also block the post-translational modification of the <u>ras</u>-encoded protein, p21. Limonene, an inhibitor of p21 prenylation, is a chemopreventive agent as well.

0077Phenylacetate blocked carcinogenesis by 5AzadC despite the decline in 5mC content. In fact, NaPA itself was found to inhibit DNA methylation; yet, in contrast to 5AzadC, NaPA was not carcinogenic. Correlations between carcinogenic potential and DNA hypomethylating activities of chemical agents have been previously documented in tissue culture models, and alterations in DNA SmC patterns were proposed to contribute and enhance the initiation of carcinogenesis. However, the present data indicate that quantitative changes in DNA methylation alone are not sufficient to affect cell phenotype and thus, hypomethylating activity is not sufficient to induce the tumorigenic phenotype in these <u>in vitro</u> and animal models.

0078The selective induction of specific genes by intracellular factors and chemical agents subsequent to demethylation has been reported by several laboratories. For example, an increase in human gamma-globin gene expression <u>in vitro</u> was found to require activation by hexamethylenebisacetamide following treatment with 5AzaC [Ley J.T., Y.L. Chiang, D. Haidaris, N.P. Anagnou V.L. Wilson, and W.F. Anderson. 1984. DNA methylation and regulation of the human β-globin like genes in mouse erythroleukemia cells containing human chromosome 11. <u>Proc. Natl. Acad. Sci</u>. USA. 81:6618-6622]; demethylation of the gene by 5AzaC was not sufficient for gene expression. By contrast, phenylacetate and phenylbutyrate induced gamma-globin gene expression with subsequent accumulation of fetal hemoglobin in cultured erythroid progenitors and in humans. In addition to affecting DNA methylation, NaPA and NaPB also activate a nuclear receptor that functions as a transcriptional factor (the peroxisome proliferator receptor is discussed herein). Thus, one possible explanation for the differences in carcinogenic opposing activities between NaPA/NaPB and 5AzadC seen here may be the ability of the aromatic fatty acids to induce the expression of genes critical to growth control. Phenylacetate and related compounds can possibly reverse the methylation-mediated state of repression of silent anti-oncogenes. The finding of DNA hypomethylation by NaPA in mammalian cells does not come as a surprise in view of previous studies demonstrating that, at millimolar concentrations, phenylacetate inhibits DNA methylation in plant. Interestingly, at such high concentrations, phenylacetate also inhibits plant tumor cell proliferation. Therefore, the effect of phenylacetate on DNA methylation and its role in regulating growth and differentiation have been conserved in evolution.

0079The outcome of combining NaPA with 5AzadC (or 5AzaC) is of particular interest. The cytosine analogs have been shown to benefit patients with severe blood disorders such as leukemia, sickle cell anemia, and β-thalassemia. There is now experimental data suggesting that 5AzadC may be active also in some solid tumors, including malignant melanoma (Weber et al, submitted) and prostate carcinoma. Unfortunately, the clinical application of 5AzadC has been limited by concerns regarding carcinogenesis. The data indicate that NaPA can minimize the carcinogenic risk, while both preserving and potentiating the therapeutic effects of SAzadC. Studies with human leukemic cells and with erythroid progenitors derived from patients with β-hemoglobinopathies revealed that NaPA can enhance the efficacy of 5AzadC, causing superinduction fetal hemoglobin production. Moreover, the addition of NaPA/NaPB to nontoxic, yet sub-optimal concentrations of 5AzadC, induced complete growth arrest and promoted apoptosis in cultured hormone-refractory prostatic carcinoma cells (unpublished data).

0080It appears therefore that phenylacetate, a common amino acid derivative, may be of value as an antitumor and chemopreventive agent. NaPA, which has an unpleasant odor, can be substituted by its precursor, NaPB (or a derivative or analog of NaPB), for oral administration. Upon ingestion by humans, phenylbutyrate undergoes β-oxidation to phenylacetate. Like NaPA, NaPB exhibits antitumor and chemopreventive activities in experimental models, and both drugs already proved safe for long-term oral treatment of children with urea cycle disorders. More recent clinical studies involving adults with cancer have confirmed that millimolar plasma levels of phenylacetate and phenylbutyrate can be achieved with no significant adverse effects. NaPB/NaPA will benefit high risk individuals predisposed to cancer development, be applied in combination with other anticancer therapeutics to enhance efficacy and minimize adverse effects, and perhaps be used in maintenance therapy to prevent disease relapse.

SECTION B:

USE OF PHENYLACETIC ACID AND ITS DERIVATIVES IN WOUND HEALING

0081Growth factors, including TGF-α, play a critical role in wound healing and repair processes. Wound healing is a localized process that involves inflammation, wound cell migration and mitosis, neovascularization, and regeneration of the extracellular matrix. Recent data suggest the action of wound cells may be regulated by local production of peptide growth factors which influence wound cells through autocrine and paracrine mechanisms (Schultz et al., <i>J. Cell Biochem.</i> 45(4):346 (1991); Schultz et al., <i>Acta Ophthalmol</i>. <i>Suppl.(Copenh),</i> 202:60 (1992)). Two peptide growth factors which may play important roles in normal wound healing in tissues such as skin, cornea, and the gastrointestinal tract are the structurally related epidermal growth factor (EGF) and TGF-α, whose receptors are expressed by many types of cells including skin keratinocytes, fibroblasts, vascular endothelial cells, and epithelial cells of the gastrointestinal tract. EGF or TGF-α is synthesized by several cells involved in wound healing, including platelets, keratinocytes, activated macrophages and corneal epithelial cells. Healing of a variety of wounds in animals and patients, such as epidermal regeneration of partial thickness burns, dermatome wounds, gastroduodenal ulcers and epithelial injuries to the ocular surface, is enhanced by exogenous treatment with EGF or TGF-α. TGF-a, which is a potent inducer of lysyl oxidase mRNA levels in cultures of human scleral fibroblasts, may be primarily responsible for inducing synthesis of extracellular matrix components after an injury. Furthermore, TGF-α is known to promote angiogenesis.

0082The lack of adequate stimulation of growth factors contributes to the nonhealing conditions of many chronic wounds. Poorly healing conditions could markedly benefit from either addition of exogenous TGF-α or stimulation of effector cells to produce TGF-α and related growth factors. It has now been discovered that PA and PB (or a pharmaceutically acceptable derivative) are capable of stimulating production of TGF-α in cells of melanocytic origin; astrocytic lineage (glioblastoma cells); and several normal human epithelial cell types, including keratinocytes, which are involved in wound healing. Further, treatment with PA and PB enhances collagen-α type 1 expression. For instance, Northern blot analysis shows induced TGF-α mRNA expression upon treatment with NaPA and NaPB in human melanoma 1011 cells (the cells were continuously treated for four days with 5mM NaPA, 10mM NaPA, 1.5mM NaPB and 3mM NaPB); expression of TGF-α is confirmed following protein analysis. Production of the TGF-α protein was increased in human keratinocytes upon exposure to NaPA and NaPB. Epithetial HK5 cells were treated with NaPB (3.0mM, 1.5mM, 0.75mM), NaPB (10mM, 5.0mM, 2.5mM) and PAG (5mM) continuously for 4 days. Untreated cells served as a control. The amount of TGF-α (ng/ml/10⁶ cells) was measured by using anti-TGF-α antibodies. This increased production of TGF-α is maintained for a few days after which the levels return to approximately pretreatment levels. As discussed below and in Figure 4, further support for the use these compounds in treating wounds may be found in the enhanced expression of ICAM-1, which is a cellular adhesion molecule/surface antigen, following treatment with NaPB.

0083Thus, the instant invention provides a method for stimulating the production of TGF-α in cells. Further, wound healing in a human or animal can be enhanced by treatment with a therapeutic amount of phenylacetic acid or a derivative of phenylacetic acid such as NaPA or NaPB, which stimulates the in-situ production ofTGF-α. For instance, surface wounds can be treated by topically applying PA, PB or a derivative of either PA or PB to the skin surface, such as in a cream formulation. Likewise, ocular injuries can be treated by application of a PA or PB (or PA/PB derivative) formulation, such as eye drops, to the cornea. Similarly, internal injuries, such as injuries to the gastrointestinal tract, can be treated by administration of oral formulations. Vaginal or anal injuries can also be treated, such as with a suppository containing pharmaceutically effective amounts of PAA or a derivative. The PA/PB or derivative formulations can be administered continuously or, preferably, intermittently, such as one or more doses in daily, weekly or monthly courses. For example topical administration once or twice a day of a composition containing from 0.1 to 10 mM PA, preferably 0.1 to 5.0 mM PA or from 0.1 to 5 mM PB, preferably 0.1 to 2.5 mM PB over the course of a week adequately stimulates wound repair. From the information contained herein, dosage concentrations and amounts for the various administration vehicles can be easily determined. For instance, a topical treatment, such as a cream containing PB, typically will contain approximately 0.5 to 3.0 mM PB or an equipotent (by equipotent it is meant that dosage may be varied among the different phenylacetic acid derivatives so as to achieve the equivalent effect on the subject) dose of a phenylacetic acid derivative. For instance, and without limitation, approximately one-half as much PB in a dose is needed to equal the potency of a similarly indicated PA dose.

SECTION C:

USE OF PHENYLACETIC ACID OR ITS DERIVATIVES IN TREATMENT OF DISEASES ASSOCIATED WITH INTERLEUKIN-6

0084Interleukin-6 (IL-6), which can be produced by monocytes and keratinocytes upon stimulation, is a pleiotropic cytokine that plays a central role in defense mechanisms, including the immune response, acute phase reaction and hematopoiesis. Activation of mature B cells can be triggered by antigen in the fluid phase. When antigen binds to cell membrane IgM in the presence of IL-1 and IL-6, mature virgin B cells differentiate and switch isotypes to IgG, IgA or IgE. Abnormal expression of the IL-6 gene has been suggested to be involved in the pathogenesis and/or symptoms of a variety of diseases, including (1) non-malignant disorders associated with abnormal differentiation programs, autoimmunity and inflammatory processes, e.g., rheumatoid arthritis, Castleman's disease, mesangial proliferation, glomerulonephritis, uveitis, sepsis, autoimmune diseases such as lupus, inflammatory bowel, type I diabetes, vasculitis, and several skin disorders of cell differentiation such as psoriasis and hyperkeratosis; (2) viral diseases such as AIDS and associated neoplasms, e.g., Kaposi's Sarcoma and lymphomas; and (3) other neoplasms, e.g., multiple myeloma, renal carcinoma, Lennert's T-cell lymphoma and plasma cell neoplasms. For instance, significantly increased IL-6 mRNA levels in lesional psoriatic tissue relative to normal tissue and elevated amounts of IL-6 in sera and peripheral blood mononuclear cells of psoriatics compared to samples from atopics or healthy controls have been found (Elder et al., <i>Arch. Dermatol. Res.,</i> 284(6):324 (1992); Neuner et al., <i>J</i>. <i>Invest. Dermatol.,</i> 97(1):27 (1991)).

0085It has now been discovered that phenylacetic acid or a derivative of phenylacetic acid, such as NaPA or NaPB, can inhibit the expression of IL-6. For instance, PA inhibits IL-1-induced IL-6 expression in colon carcinoma cells. Cellular mRNA (5 µg/lane) from colon 26 carcinoma cells was subjected to Northern blot analysis using an IL-6-specific probe. The cells were treated with recombinant IL-1β, 0.1 ng/ml, either alone or in combination with continuous treatment for 48 hours with 2.5mM, 5.0mM, and 10mM NaPA. No IL-6 was detected in control (untreated) cells. This reduction in RNA is confirmed by reduction in IL-6 protein. Thus, PA, PB and their derivatives can be used in the treatment of diseases involved with the abnormal overexpression of IL-6.

0086For instance, treatment twice daily by topical application of either 2mM NaPB in a mineral oil-based cream or 2mM napthylacetate and Vitamin B₁ in a mineral oil-based cream directly onto the patient's psoriatic lesions resulted in disappearance of the lesions within a week. Similar treatment of a patient with a severe case of psoriasis resulted in the psoriatic lesions resolving in approximately 1-3 weeks. Obviously, the mode of administration and amount of drug can vary depending upon the IL-6-related disease being treated in order to target the drug to the cells in which reduction of IL-6 expression is desired. For example, injection of a 0.1 mM-5mM PB solution or an equipotent solution containing a pharmaceutically acceptable phenylacetic acid derivative into the joint region may be appropriate for treatment for rheumatoid arthritis whereas other diseases may be more appropriately treated by topical, intravenous or oral delivery. Treatment can be by either continuous or discontinuous treatment, but cessation of the drug, particularly PB, may be accomplished by ramping down the dosage amounts to prevent an overreaction to the cessation of treatment with the drug. Additionally, diseases involving the abnormal overexpression of IL-6 can be treated by administration of an effective amount of phenylacetic acid or a phenylacetic acid derivative, particularly PA or PB, in combination with an effective amount of an anti-inflammatory agent, including various vitamins such as vitamin B₁, non-steroidal inflammatory agents and steroidal anti-inflammatory agents. The anti-inflammatory agent can be combined with the phenylacetic acid derivative(s) of this invention in the same dosage form or administered separately by the same or different route as the derivative. An effective amount of the anti-inflammatory agent refers to amounts currently in clinical use for the specific disease state or less.

SECTION D:

USE OF PHENYLACETIC ACID OR ITS DERIVATIVES IN THE TREATMENT OF AIDS-ASSOCIATED CNS DYSFUNCTION

0087Hallmarks of central nervous system (CNS) disease in AIDS patients are headaches, fever, subtle cognitive changes, abnormal reflexes and ataxia. Dementia and severe sensory and motor dysfunction characterize more severe disease. Autoimmune-like peripheral neuropathies, cerebrovascular disease and brain tumors are also observed. In AIDS dementia, macrophages and microglial cells of the CNS are the predominant cell types infected and producing HIV-1. However, it has been proposed that, rather than direct infection by HIV-1, the CNS disease symptoms are mediated through secretion of viral proteins or viral induction of cytokines that bind to glial cells and neurons, such as EL-1, TNF-α and IL-6 (Merrill et al., <i>FASEB J</i>., 5(10):1291(199 1)). TGF-β is a growth factor which is released by many cell types. Among other effects, TGF-β is highly chemotactic for macrophages and fibroblasts and stimulates the release of TNF-α, TGF-α and, indirectly, a variety of other modulators from macrophages which have been implicated in the initiation of the CNS symptoms of AIDS.

0088It has now been discovered that phenylacetic acid or a derivative of phenylacetic acid, such as NaPA or NaPB, can inhibit the production of TGF-β2. Because TGF-β2 is an immumosuppresive factor, this inhibition results in a general improvement of the patient's immune system. Gene expression of TGF-β2 in glioblastoma cells was inhibited by both PA and PB. Cellular mRNA (5 µg/lane) from A172 cells was subjected to Northern blot analysis using a TGF-β2-specific probe. The cells were continuously treated for 4 days with 5mM NaPA, 10mM NaPA and 1.5mM NaPB. This reduction in RNA leads to reduced TGF-β2 protein synthesis. Thus, PA, PB or their derivatives can be used to inhibit the production of TGF-β2 in cells, particularly to control or alleviate the CNS symptoms resulting from HIV infection. As discussed above, this treatment also inhibits the production of IL-6, further allowing for alleviation of the CNS symptoms. Amounts of drug and/or regimens of administration elective for inhibiting TGF-β2 correspond to those appropriate for treatment or prevention of cancer.

SECTION E:

USE OF PHENYLACETIC ACID AND ITS DERIVATIVES TO ENHANCE IMMUNOSURVEILLANCE

0089Immunosurveillance in an animal such as a human can be enhanced by treatment with PA, PB or their derivatives. Tumor cells are thought to escape attack by the immune system by at least two means. First, many tumors secrete immune suppressive factors that directly reduce immune activity. Additionally, some tumor cells do not express, or have reduced expression of, appropriate surface antigens that allow the immune system to identify outlaw cells. However, the compositions of the instant invention can activate otherwise dormant genes such as fetal globin, perhaps by DNA hypomethylation. Similarly, activation of cancer suppressor genes, dormant antigens and other genes, such as (1) cellular major histocompatibility antigens (MHC Class I and II) or other surface antigens, such as ICAM-1; (2) tumor antigens such as MAGE-1; and (3) viral latent proteins such as EBV's latent membrane protein (which is implicated in numerous diseases such as T-cell neoplasms, Burkitt's lymphoma nasopharyngeal carcinoma, and Hodgkin's disease), may contribute to enhanced immunosurveillance. Thus, neoplastic cells can be treated with PA, PB or their derivatives to provide for expression of cell surface antigens that increase the effectiveness of the immune system by allowing for adequate identification and clearance of the tumor cells by the immune system. Activation of latent viral proteins could also induce a lytic cycle leading to death of the infected cell.

0090Evidence that the instant phenylacetic acid or phenylacetic acid derivative compositions can activate dormant genes and enhance expression of surface antigens is given by Figure 4, which shows enhanced expression of MHC Class I, MHC Class II and the adhesion molecule ICAM-1 in melanoma cells that have been treated for 10 days with 2mM NaPB (e.g., note the shift of the population mean from approximately 50 to 200 for MHC class I).

0091Furthermore, it has now been discovered that PB induces expression of EBV's latent membrane protein (LMP) in Burkitt's lymphoma cells. Cytoplasmic RNA (20 µg/(lane) was isolated from LandisP, RajI and P3HRI Burkitt's lymphoma cell lines, which had been treated with 2 mM PB for four days, and subjected to Northern blot analysis with a specific LMP probe. In all three cell lines, a positive reaction was observed compared to controls (untreated cells), indicating that PB induces the expression of EBV's latent membrane protein. In Burkitt's lymphoma cells both PA and PB cause additional molecular and cellular changes, including cytostasis, decline in <u>myc</u> expression and enhancement of HLA+1.

0092Because these surface antigens enhance tumor immunogenicity <i>in vivo,</i> treatment of the animal (human) with PA, PB or their derivatives can enhance the effectiveness of the immune system of the individual. Doses of approximately 0.5-3.0 mM PB or equipotent doses of pharmaceutically acceptable phenylacetic acid derivatives may be useful. This treatment can also be combined with conventional immunotherapy treatments and/or antigen targeted, antibody-mediated chemotherapy. While treatment usually is accomplished by a protocol which allows for substantially continuous treatment, discontinuous or pulsed treatment protocols are also effective, especially for cells capable of terminally differentiating upon treatment with PAA or a PAA derivative. For instance, treatment of the melanoma cells given in Figure 4 for 10 days was sufficient to allow continued enhanced expression of the surface antigens past this 10 day period.

EXAMPLE 4:

NaPA, and NaPB Effects on Burkitt's Lymphoma

0093The Epstein Barr Virus (EBV) infected cell line is growth inhibited by NaPB more than by NaPA. This may be due to a reduction c-<i>myc</i> expression after about four days of treatment. Unfortunately, there is at the present time, no known measure of differentiation in this cell line. However, treatment with NaPA causes substantial morphological changes and clumping (perhaps due to cell-cell or cell-substrate interaction alterations). The increase in proportion of cells which bind to the extracellular matrix may be due to an increase in ICAM 1. The cell produces more HLA class I antigens and more latent membrane protein which thereby enhances the visibility of the cell to the immune system.

SECTION F:

METHODS OF MONITORING THE DOSAGE LEVEL OF PHENYLACETIC ACID OR ITS DERIVATIVES IN A PATIENT AND/OR THE PATIENT RESPONSE TO THESE DRUGS

0094As discussed above, administration of phenylacetic acid or a derivative of phenylacetic acid such as NaPA or NaPB to an animal (human) in amounts and over treatment courses as described herein induce a variety of molecular changes. These molecular traits can be used as biomarkers to either (1) monitor the dosage level of the drug or its bioavailability in the animal and/or (2) serve as a biomarker of the patient response to the drug. For instance, as described above, administration of an effective amount of NaPA or NaPB (or their derivatives) results in a variety of molecular effects, including a) increased levels of fetal hemoglobin in erythrocytes; b) increased production of TGF-α in various cells such as those of melanocytic origin, astrocytic lineage or epithelial cell types; c) inhibition of the production of IL-6; and d) inhibition of the production of TGF-β2. Thus, absolute or relative (before/after treatment) concentrations of a particular biomarker can be determined in an appropriate cell population of the individual to allow monitoring of the dosage level or bioavailability of the drug. Further, this concentration can be correlated or compared with patient responses to develop a patient response scale for a desired treatment goal based upon that biomarker. For instance, the increased amount of fetal hemoglobin can be used to indicate the bioavailability of PA or PB for treatment or prevention of a neoplastic condition as well as indicating the degree of patient response to the drug.

SECTION G:

THE ACTIVATION OF THE PPAR BY PHENYLACETIC ACID AND ITS DERIVATIVES

0095Peroxisomes are cellular organelles that contain enzymes which control the redox potential of the cell by metabolizing a variety of substrates such as hydrogen peroxide. Recent advances in this area reveal that peroxisomes can be proliferated through activation of a nuclear receptor which regulates the transcription of specific genes (Gibson, <i>Toxicol</i>. <i>Lett</i>., <b>68</b>(1-2): 193(1993)). This nuclear receptor has been named the peroxisome proliferator-activated receptor (PPAR) and belongs to the steroid nuclear receptors family that have a major effect on gene expression and cell biology. Binding by peroxisome proliferators such as clofibrate, herbicides, and leukotriene antagonists with PPAR activates the nuclear receptor, which acts as a transcriptional factor, and can cause differentiation, cell growth and proliferation of peroxisomes. Although these agents are thought to play a role in hyperplasia and carcinogenesis as well as altering the enzymatic capability of animal cells, such as rodent cells, these agents appear to have minimal negative effects in human cells, as exemplfied by the safety of drugs such as clofibrate (Green, <i>Biochem</i>. <i>Pharm.</i> 43(3):393(1992)).

0096Peroxisome proliferators typically contain a carboxylic functional group. Therefore, PA, PB and various phenylacetic acid derivatives were tested for their ability to activate the PPAR and compared with known peroxisomal proliferators. As shown in Figure 5, Clofibrate, a known activator of peroxisosmal proliferation, caused a 4- to 5-fold increase in activation as measured by increased production of the response element for acyl-CoA oxidase, which is the rate limiting enzyme in beta-oxidation and is contained in peroxisomes (Dreyer et al., <i>Biol</i>. <i>Cell</i>, 77(1):67(1993)). PA and PB caused mild activation (double baseline activity), naphthyl acetate was relatively more active (approximately 2.5- to 4-fold increase) while the halogenated analogs of PB were very potent stimulators. Interestingly, butyrate was not a significant peroxisomal proliferation activator.

0097The peroxisome proliferator-activated receptor has been shown to belong to the same family of nuclear receptors as the retinoid, thyroid and steroid receptors and PPAR is known to interact with RXR, the receptor of 9-cis-retinoic acid (a metabolite of all-trans-retinoic acid). Because the PPAR signaling pathway converges with the 9-cis retinoid receptor signal, it can be anticipated that retinoic acid or the like will significantly enhance the activity of PA or PB or other phenylacetic acid derivatives of this invention. Indeed, enhancement of the induction of HL-60 cell differentiation by NaPA in combination with retinoic acid is discussed herein. Additionally, this synergistic response has been confirmed in other tumors, such as neuroblastoma, melanoma and rhabdorayosarconia cells.

0098Thus, combination therapy consisting of administration (simultaneously/sequentially in the same dosage form or simultaneously/sequentially in separate dosage forms) of Vitamin A, Vitamin D, Vitamin C, Vitamin E, B-carotene, or other retinoids and the like with PA, PB or other phenylacetic acid derivatives is encompassed by the instant invention for any of the treatment regimes given herein. Appropriate doses of the phenylacetic acid derivatives include approximately 0.5-10mM PA, more preferably 0.5-5mM PA, doses or equipotent doses of a pharmaceutically acceptable phenylacetic acid derivitive. Between 0.1 and 1.0 µM concentrations of the retinoids are expected to be effective. This combination therapy enhances, for instance, the efficacy of treatment with PA, PB or other phenylacetic acid derivatives, taken alone, for cancer, anemia and AIDS treatment, wound heating, and treatment of nonmalignant disorders of differentiation.

0099Agents affecting cellular peroxisomes have a major impact on oxidative stress and the redox state of a cell. Thus, further evidence that PA, PB or other phenylacetic acid derivatives activate PPAR can be found by the rapid increase of gamma glutamyl transpeptidase and catalase following cellular exposure to PA or PB, as shown in Figure 6. These antioxidant enzymes, whose activities are increased when peroxisome proliferation has been activated, were increased by 100% 24 hours after administration of sodium phenylbutyrate. This effect was reversed by approximately 48 hours and activity was maintained below control levels through 100 hours. The intracellular level of glutathione followed a similar biphasic pattern with an initial increase (20%) followed by a fall to levels below baseline at 100 h. The rapid induction with subsequent sharp decline of these antioxidant enzymes was observed in numerous tumor types from prostatic, breast and colon adenocarcinomas, osteosarcoma, and brain tumors. Molecular analysis showed changes in the rate of gene transcription of the GSH-related and antioxidant enzymes, which are consistent with activation of PPAR by PA, PB or their analogs.

0100The biphasic change in glutathione and anti-oxidant enzymes induced by treatment with PA, PB and other phenylacetic acid derivatives can be taken advantage of to provide either radioprotection protocols or radiosensitization protocols. The outcome is highly dependent upon treatment schedule. Specifically, treatment of cells with PA or PB protects cells from radiation through approximately at least 24 hours, whereas longer exposure, such as for 72 hours, results in a significant sensitization of tumor cells to killing by free radical-based radiation or chemotherapy therapies (<i>e.g.</i>, ionizing radiation such as x-rays, gamma rays, protons, electrons, isotopes or duxorubicin (adriamycin)).

0101Experiments were undertaken to examine the effects of treatment with PA or PB on cells which were subjected to chemical or radiation stress Pretreatment of glioblastomas (Figure 7), breast carcinoma and metastatic prostate cells with a non-toxic dose of PA or PB 72 hours prior to CO⁶⁰ γ-radiation or treatment with adriamycin demonstrated a significant dose-related increase in cell killing by either modality. The surviving fraction of cells following drug treatment was nearly one tenth the fraction surviving with no pretreatment, which suggests that PA, PB or other like analogs could be used to increase the efficacy of radiation therapy and chemotherapy substantially. As such, the instant invention encompasses combination anti-cancer therapy consisting of administration of an non-toxic effective amount of phenylacetic acid or a pharmaceutically acceptable phenylacetic acid derivative (according to any of the dosage concentration protocols given herein) in combination with radiation therapy, particularly local treatment, or chemotherapy, particularly targeted to the tumor cells. This adjuvant therapy can be administered, for instance, after approximately 24 hours, such as from 24 hours to 120 hours or more, from the initiation of the administration of the derivative.

0102Phenyl fatty acids such a PA and its derivatives or analogs have exhibited a wide range of activity in the treatment of glioblastomas and adenocarcinomas by inducing malignant cell differentiation at relatively nontoxic doses. Further, it has been discovered that PA and its derivatives/analogs inhibit the post-translational processing of the <i>ras</i> oncogene-encoded protein which was implicated in the maintenance of tumor cell radioresistance. Thus, PA and its derivatives/analogs may be useful and potent radiosensitizers. The lack of significant toxicity for PA/PB makes them particularly attractive radiosensitizers in comparison to currently used chemical sensitizers.

0103<i>In vitro</i> data demonstrate that cellular exposure to PA and PB resulted in a marked increase in cellular radiosensinvity in brain, breast, prostate, and colon human tumor cells. This increased radiosensitivity was associated with a decrease in the activity of protective antioxidant enzymes such as catalase and gamma-glutamyl transferase and a concomitant decrease in the naturally occurring radioprotector, glutathione (GSH). Interestingly, highly radioresistant prostate tumor cells that express high levels of the <i>ras</i> oncogene were significantly radiosensitized in comparison to tumor cells that express low levels of <i>ras</i> which were only slightly radiosensitized by PA exposure.

0104These results suggest a further consideration of a variety of pathogenic disorders. Inflammatory response to tissue injury, pathogenesis of emphysema, ischemia-associated organ injury (shock), doxorubicin-induced cardiac injury, drug-induced hepatotoxicity, atherosclerosis, and hyperoxic lung injuries are each associated with the production of reactive oxygen species and a change in the reductive capacity of the cell. Although long-term exposure to PA or other phenylacetic acid analogs depletes cellular redox protection systems, short term treatment with PA and the like may have significant implications for treatment of disorders associated with increased reactive oxygen species.

SECTION H:

USE OF PHENYLACETIC ACID AND ITS DERIVATIVES IN TREATMENT OF CANCERS HAVING A MULTIPLE-DRUG RESISTANT PHENOTYPE

0105In treating disseminated cancers, systemic treatment with cytotoxic agents is frequently considered the most effective treatment. However, a number of cancers exhibit the ability to resist the cytotoxic effects of the specific antineoplastic drug administered as well as other agents to which the patient's system has never been exposed. In addition, some cancers appear to have multiple drug resistance even prior to the first exposure of the patient to an antineoplastic drug. Three mechanisms have been proposed to explain this phenomenon: P-glycoprotein Multiple Drug Resistance (MDR), MDR due to Topoisomerase Poisons and MDR due to altered expression of drug metabolizing enzymes (Holland et al., <i><u>Cancer Medicine</u>,</i> Lea and Febiger, Philadelphia, 1993, p. 618-622).

0106P-glycoprotein MDR resistance appears to be mediated by the expression of an energy-dependent pump which rapidly removes cytotoxic agents from the cell. High levels of p-glycoprotein are associated with amplification of the MDR gene and transcriptional activation. Increased expression of p-glycoprotein can also be stimulated by heat shock, heavy metals, other cytotoxic drugs and liver insults, and ionizing radiation in some cell lines from some species. The results are not sufficiently consistent to confirm a causal relationship but are highly suggestive.

0107Topoisomerases are nuclear enzymes which are responsible for transient DNA strand breaks during DNA replication, transcription and recombination. Cytotoxic agents, such as etoposide, doxorubicin, amsacrine and others are known poisons of topoisomerase II, and cause lethal DNA strand breakage by the formation of stable complexes between the DNA, topoisomerase II and drug. MDR to this type of drug is thought to be caused by changes in the nature and amount of enzymatic activity, which is thought to prevent the formation or effect of the DNA-enzyme-drug complex.

0108Some cytotoxic agents are able to induce increased metabolic capability which permits rapid elimination of the toxin. Among the enzymes which have been implicated are glutathione S-transferase isozymes (GSTs). These enzymes are responsible for the conjugation of the electrophilic moieties of hydrophobic drugs with glutathione, which leads to detoxification and elimination of the drug.

0109As discussed above, PA and other phenylacetic acid analogs have been shown to stimulate the proliferation of peroxisomes which contain some isozymes of GST. Based on that observation, it would be expected that PA and PB would also stimulate MDR. However, it has now been discovered that the opposite occurs. For instance, the PA inhibited the growth of the MCF-7 adriamycin-resistant breast cancer cells exhibiting the MDR phenotype Up to 10mM PA in cultures, growth of cells is dramatically inhibited in a dose-dependent manner. Surprisingly. PA and PB are more highly active against adriamycin-resistant breast cancer cells than compared to adriamycin-sensitive cells. This increased sensitivity of the MDR phenotype is reproducible in other tumor models, including those that are resistant to radiation therapy,

0110Thus, the instant invention provides a method of treating tumor cell populations in a patient that are resistant or able to survive current conventional treatments, particularly tumors having a MDR phenotype, by administration to the patient of non-toxic amounts of PA (such as amounts that provide up to 10mM PA or an equipotent dose of a pharmaceutically acceptable phenylacetic acid derivative) in the vicinity of the tumor or equivalently effective amounts of phenylacetic add or a phenylacetic acid analog. PA or other analog dosage protocols similar to those described in relation to the potentiation of differentiation in tumor cells by these phenylacetic acid-related compounds, including the various combination therapies described herein, can be used to treat patients with resistant tumors such as MDR tumors. Long-term (weeks, months) or short-term (day(s)) substantially continuous treatment regimens (including continuous administration or frequent administration of separate doses) as well as pulsed regimens (days, weeks or months of substantially continuous administration followed by a drug-free period) can beneficially be employed to treat patients with MDR tumors.

SECTION I:

PHENYLACETATE AND ITS DERIVATIVES, CORRELATION BETWEEN POTENCY AND LIPOPHILICITY

0111One potential problem that could hinder the clinical use of phenylacetate is related to the large amounts of drug required to achieve therapeutic concentrations, i.e., over 300 mg/kg/day. Studies in plants revealed that increasing the lipophilicity of a phenylacetate analogue (as measured by its octanol-water partition coefficient) enhanced its growth-regulatory activity [Muir, R.M., Fujita, T., and Hansch, C. Structure-activity relationship in the auxin activity of mono-substituted phenylacetic acids. <u>Plant Physiol.,</u> 42: 1519-1526, 1967.]. Calculated partition coefficient (CLOGP) was used to correlate the predicted lipophilicity with the measured antitumor activity of phenylacetate analogues. For these analogues, enhanced potency in inducing cytostasis and phenotypic reversion in cultured prostate carcinoma, glioblastoma, and melanoma cells was correlated with increased drug lipophilicity. <b>Cell cultures</b>. Studies included the following humans tumor cell lines: (a) hormone-refractory prostatic carcinoma PC3, DU145, purchased from the American Type Culture Collection (ATCC, Rockville, MD); (b) gliobtastoma U87, A172 (ATCC);(c) melanoma A375 and mel 1011, provided by J. Fidler (M.D. Anderson, Houston TX) and J. Weber (NCI, Bethesda MD), respectively. Cells were maintained in RPMI 1640 supplemented with 10% heat inactivated fetal calf serum (Gibco. Laboratories), antibiotics, and 2 mM L-glutamine. Diploid human foreskin FS4 fibroblasts (ATCC), and human umbilical vein endothelial cells (HUVC) were used for comparison. The HUVC cells, isolated from freshly obtained cords, were provided by D. Grant and H. Kleinman (NIH, Bethesda MD). <b>Antitumor Agents</b>. Sodium phenylacetate and phenylbutyrate were from Elan Pharmaceutical Corp. Gainvesville GA. 4-Iodophenylacetate, 4-iodophenylbutyrate and 4-chlorophenylbutyrate were synthesized by the Sandmeyer procedure from the corresponding 4-amino-phenyl-fatty acids. The halogenated products were extracted from the acidic reaction mixtures with diethyl ether which was then taken to dryness. The residue was dissolved in boiling hexane and the crystals that formed on cooling were collected by suction filtration. The product was recrystallized from hexane until the reported melting points were obtained. Amides of phenylacetate and phenylbutyrate were produced by heating the sodium salts with a small excess of thionylchloride followed by the addition of ice-cold concentrated ammonia. The amides were purified by recrystalization from boiling water. The identity of synthesized compounds was verified by melting point determination and by mass spectroscopy. All commercially available derivatives were purchased from Aldrich (Milwaukee,WI) or Sigma (St. Louis, MO), depending on availability. Tested compounds were all dissolved in distilled water, brought to pH 7.0 by the addition of NaOH as needed, and stored in aliquots at -20°C till used. <b>Calculation of Relative Drug Lipophilicities.</b> Estimation of the contribution of lipophilicity to the biological activity of a molecule was based on its calculated logarithm of octanol-water partition coefficient (CLOGP). This was determined for each compound using the BLOGP program of Bodor et al., (BLOGP version 1.0, Center for Drug Discovery, University of Florida) assuming that the degree of ionization is similar for all tested compounds. <b>Quantitation of Cell Growth and Viability.</b> Growth rates were determined by cell enumeration with a hemocytometer following detachment with trypsin-EDTA, and by an enzymatic assay using 3-[4,5-dimethylthiazol-2-yl]-2,5-diphenyltertrazolium bromide (MTT). These two assays produced essentially the same results. Cell viability was assessed by trypan blue exclusion. <b>Colony Formation in Semi-Solid Agar</b>. For analysis of anchorage independent growth, cells were harvested with trypsin-EDTA and resuspended at 1.0 x 10⁴ cells per ml in growth medium containing 0.36% agar (Difco). Two ml of cell suspension were added to 60 mm plates (Costrar) which were pre-coated with 4 ml of solid agar (0.9%). Tested drugs were added at different concentrations, and colonies composed of 30 or more cells were counted after 3 weeks. <b>Growth on Matrigel</b>. Cells were first treated with drugs in T.C. plastic dishes for 4-6 days, and then replated (5 x 10⁴ cells per well) onto 16 mm dishes (Costar, Cambridge, MA) coated with 250 ul of 10 mg/ml matrigel, a reconstituted basement membrane (Collaborative Research). Drugs were either added to the dishes or omitted in order to determine the reversibility of effect. Net-like formation characteristic of invasive cells occurred within 12 hours, while invasion into the matrigel was evident after 6-9 days. <b>Drug Uptake Studies</b>. Cells were plated in 6-well T.C. dishes (Costar) at 5 x 10⁵ cells per dish. The growth medium was replaced after 24 hrs with 750 ul of fresh medium containing 4 5 x 10⁵ DPM of either ¹⁴C-phenylacetic acid (3.4 mCi/mmmol, Sigma) or ¹⁴C-naphthylacetic acid (5.4 mCi/mmol, Sigma), and the cultures were incubated for 10-180 minutes at 37°C. Labeling was terminated by placing plates on ice. Cells were then washed twice with 5 ml ice-cold phosphate buffer saline (PBS), detached by scraping, and the radioactivity retained by cells determined using liquid scintillation. Blank values were determined by incubating the radiolabled compounds in an empty dish. <b>Correlation Between Drug Lipophilicity and Growth-Inhibitory Effect of Phenylacetate and its Analogues</b>. The growth inhibitory effect of these compounds on prostatic carcinoma, glioblastoma, and melanoma cell lines are expressed as IC₅₀ and correlated with drug lipophilicity determined using the CLOGP program. As seen in Tables 14 and 15, there is a good correlation between cytostasis and lipophilicity. In agreement with previous observations with phenylacetate, the cytostatic effect was selective as higher drug concentrations were needed to significantly affect the proliferation of normal endothelial cells and skin fibroblasts. No cytotoxicity (i.e., decline in cell viability) occurred during 4-6 days of continuous treatment with the tested compounds. <tables id="tabl0007" num="0007"><img file="EP1523982A2_D0003.tif" /></tables><tables id="tabl0008" num="0008"><img file="EP1523982A2_D0004.tif" /></tables>

0112Further analysis of structure-activity relationships was based on the method of Hansch and Anderson used for the correlation of the anesthetic and metabolic effects of barbiturates with their octanol-water partition coefficieats [Hansch, C., and Anderson, S.M. The structure-activity relationship in barbiturates and its similarity to that in other narcotics. <u>J. Med. Chem</u> 10: 745-753, 1967.]. Adaptation of this method assumes that, if the relationship is simple, it will follow the equation: log 1/C = slope log P + K. Plotting the log 1/IC₅₀ values obtained with prostatic cells vs drug CLOGP (Figure 8) resulted in a best fit line described by the equation: log 1/IC₅₀ = 0.89 CLOGP + 0.55. The slope of this tine (0.89) is in the range of values found for the anesthetic potencies of a series of barbiturate analogues. Hansch and colleagues also studied the effect of phenylacetate and its derivatives on plant growth. As shown in Figure 8, the concentration range and rank order of inhibition of plant growth by phenylacetate analogues are comparable to the inhibition of growth of prostatic cancer cells by this same series of compounds.

0113For both chloro- and methyl-substitutions, the para position is more potent than the ortho position. In addition, and despite their nearly equal contributions to lipohilicity, <u>para</u> chloro-substitution was more potent than methyl. In contrast to derivatives containing ring or alpha-carbon substitutions, those with blocked carboxyl groups exhibited a decline in cytostatic activity. The methyl ester of phenylacetate was about half as active than the free acid (IC₅₀ in DU145 prostatic cells 8.8 mM versus 4.1 mM for phenylacetate). The amide forms were also less active than the parent compounds in this experimental system, with IC₅₀s of 2.0 mM for phenylbutyramide venus 1.2 mM for phenylbutyrate, and 4.8 mM for phenylacetamide versus 4.1 mM for phenylacetate. <b>Drug Uptake</b>. One possible function of increasing lipophilicity is an increasing ease with which aromatic fatty acids can enter into, and cross the plasma membrane as well as the membranes of other organelles. The rate of phenylacetate uptake by tumor cells was compared that of the more hydrophobic analog, naphthylacetate (Table 15). After 10 minutes, relative to phenylacetate more than twice as much naphthylacetate had entered the glioblastoma U87 cells (uptake of phenylacetic acid was 41% that of naphthylacetic acid) indicating that its movement through the plasma membrane was more than twice as fast as phenylacetate. After 20 minutes, the amount of naphthylacetate taken up by the cells was as only 26% greater than that of phenylacetate and at 180 minutes the intracellular levels of both compounds were nearly equal, suggesting that at this time the more rapid influx of naphthylacetic acid was balanced by an equally rapid efflux. There was little further uptake and the concentration of phenylacetate inside and outside the cells was about equal indicating that these cells do not actively accumulate much aromatic fatty acid. <b>Phenotypic Reversion.</b> In addition to causing selective cytostasis, phenylacetate induces malignant cells to undergo reversion to a more benign phenotype. The effect of analogs on tumor biology was tested using as a model the hormone- refractory prostatic PC3 cells originally derived from a bone metastasis. PC3 exhibit several growth characteristics <u>in vitro</u> that correlate with their malignant behavior <u>in vivo</u>, including anchorage-independent growth (i.e., colony formation in semi-solid agar), and formation of "net"-like structures when plated on a reconstituted basement membrane (matrigel). The ability of phenylacetate and representative analogs to bring about loss of such properties is summarized in Figure 9. Similar to the cytostatic effect, drug ability to induce reversion to a non-malignant phenotype was highly correlated with the calculated lipophilicity of the drugs. Of the tested compounds, naphthylacetate, as well as derivatives of phenylbutyrate and phenylacetate with iodo- and chlorine substitutions were found to be the most active on a molar basis. The relative efficacy of the compounds in suppressing anchorage independent growth was confirmed using U87 glioblastoma cells (data not shown).

0114The outstanding result is the discovery that: (a) there is a simple relationship between the lipophilicity of a phenylacetate derivative and its activity against human tumor cells, and (b) the relative potency observed with human neoplasms is similar to that documented in plants, indicating that the role of the aromatic fatty acids in growth regulation has been conserved in evolution.

0115There is accumulating evidence indicating that phenylacetate and derivatives may act through multiple mechanisms to alter gene expression and cell biology. At growth inhibitory concentrations, the aromatic fatty acids could alter the pattern of DNA methylation, an epigenetic mechanism controlling the transcription of various eukaryotic genes. Phenylacetate inhibits DNA methylation in plant and mammalian cells, and both phenylacetate and phenylbutyrate were shown to activate the expression of otherwise dormant methylation-dependent genes. DNA hypomethylation <u>per se</u> is not sufficient to induce gene expression. Preliminary findings indicate that phenylacetate, phenylbutyrate and several analogs activate a nuclear receptor that functions as a transcriptional factor, interestingly, the receptor is a member of a steroid nuclear receptor superfamily, the ligands of which are carboxylic acids and include well characterized differentiation inducers such as retinoids.

0116In addition to affecting gene transcription, the phenyl-fatty acids may interfere with protein post-translational processing by inhibiting the mevalonate (MVA) pathway of cholesterol synthesis. MVA is a precursor of several isopentenyl moieties required for progression through the cell cycle. and of prenyl groups that modify a small set of critical proteins. The latter include plasma membrane G and G-like proteins (e.g., ras) involved in mitogenic signal transduction (molecular weight 20-26 kDa), and nuclear envelope lamins that play a key role in mitosis (44-74 kDa). The aromatic fatty acids can conjugate with coenzyme-A, enter the pathway to chain elongation, and interfere with lipid metabolism in general. Furthermore, compounds such as phenylacetate can assume a conformation resembling mevalonate pyrophosphate and inhibit MVA utilization specifically. It was recently demonstrated that phenylacetate activity against poorly differentiated mammalian tissues (human glioblastoma cells and the developing fetal brain) is associated with inhibition of MVA decarboxylation and a decline in protein isoprenylation. Rapidly developing mammalian and plant tissues are highly dependent upon MVA for cell replication. Inhibition of MVA utilization by phenylacetate-related compounds could thus be responsible in part for their effect documented in such highly divergent organisms.

SECTION J:

NAPA AND NAPB - RETINOIC ACID COMBINATION TREATMENT

0117Using the LA-N-5 cell line, NaPA can stimulate the differentiation of human neuroblastoma cells. Furthermore, the results show that combination treatment with NaPA and RA results in synergistic anti-tumor and differentiating effects which may be mediated, among other mechanisms, by the ability of NaPA to impact positively on the RA differentiation program.

<u>EXAMPLE 5</u>

:

LA-N-5 cells - combination of NaPA and RA

0118<b>Cell culture</b>. The LA-N-5 human neuroblastoma cell line was grown in RPMI 1640 medium supplemented with 10% heat-inactivated FCS, HEPES buffer and 50 IU/ml penicillin/streptomycin and 1 <i>µ</i>g amphotericin (complete medium) as previously described (Sidell, N., Altrnan, A, Haussler, M.R., and Seeger, R.C. Effects of retinoic acid (RA) on the growth and phenotypic expression of several human neuroblastoma cell lines. <i>Expl</i>. <i>Cell Res</i>., 148:21-30, 1983). NaPA was obtained from Elan Pharmaceutical Research Corporation (Gainesville, GA). All other chemicals were purchased from Sigma (St. Louis, MO) unless otherwise indicated. All-<i>trans</i>-RA was dissolved in dimethylsulfoxide to a of 5 x 10^-2 mmol and stored at -20 C.

0119^<b>3</b><b>H-Thymidine incorporation</b>. Cells (3 to 5 x 10³/well) were seeded in 24-well plastic tissue-culture dishes (2 cm², Coming, Palo Alto, CA) and grown in the absence or presence of the indicated concentration ofNaPA and/or RA. One <i>µ</i>Ci ³H-thymidine/well was added to the cultures after 6-7 days of growth unless otherwise indicated. After incorporation for 12 to 16 hr, cultures were extensively rinsed in PBS, TCA-precipitated for 30 min (10% TCA) and washed in absolute ethanol. Cultures were then solubilized in 1N NaOH, neutralized in 1N HCl and an aliquot was counted in Scintifluor (National, Diagnostics, Manville, NJ) cocktail. Results from typical experiments are expressed as mean cpm (±SEM) of triplicate or quadruplicate wells. Each experiment was performed at least 3 times with similar results.

0120<b>Acetylcholinesterase (AChE) activity</b>. Specific AChE activity was measured as a biochemical index of the relative state of differentiation of treated and control LA-N-5 cells (Sidell, N., Lucas, C.A, and Kreutzberg, G.W. Regulation of acetylcholinesterase activity by retinoic acid in a human neuroblastoma cell line. <i>Expl. Cell Res.,</i> 155:305-309, 1984). For measure of AChE activity, cells were grown in 25 cm² tissue culture flasks for 6 days in the absence or presence of the indicated concentrations of NaPA and/or RA, washed twice with isotonic saline, and harvested by vigorous shaking of the culture flask. After removal of saline, cells were frozen at -20°C, thawed by the addition of ice-cold 10 mM sodium phosphate buffer (pH 7.4) containing 0.5% Triton X-100 (1.5 ml/10⁶ cells), and sonicated for 10 sec. AChE activity in samples of the homogenate was determined photometrically by following the hydrolysis of acetylthiocholine as previously described (Sidell, N., Lucas, C.A., and Kreutzberg, G. W. Regulation of acetylcholinesterase activity by retinoic acid in a human neuroblastoma cell line. <i>Expl. Cell Res</i>., 155:305-309,1984). Protein concentrations were determined with a Bio-Rad Coomassie protein assay kit using bovine serum albumin as the standard. Results, in nmoles/hr/mg protein, are expressed as means ± S.E.M. of triplicate wells in a typical experiment. All experiments were repeated at least 3 times.

0121<b>Northern blot analysis.</b> Total RNA was extracted from harvested cells by the guanidinium isothiocyanate method and precipitated through a CsCl gradient (Chirgwin et al., 1979). The RNA was then stored at -70° until use. RNA (20-25 <i>µ</i>g) was denatured by glyoxal, fractionated by electrophoresis through a 1.2% agarose gel at low voltage then transferred to a Biotrans nylon membrane (ICN, Irvine, CA) using a positive pressure transfer apparatus (Stratagene, La Jolla, CA). DNA probes were labelled using a random prime kit and activities of 10⁹ cpm/µg were normally obtained (Amersham, Arlington Heights, IL). Prehybridization and hybridization medium consisted of 6X standard saline citrate (SSC), 5X Denhardt's solution, 0.5% SDS and 100 µg/ml salmon sperm DNA. After 16 hrs of incubation, filters were washed once in 1X SSC, 0.1% SDS at room temperature for 30 min and 3 times in 0.2% SSC, 0.1% SDS at 68°. Autoradiography was performed using Kodak SAR film at -70°. Quantitative densitometry was performed with a scanning laser densitometer (Biomed Instruments, Irvine, CA).

0122The nuclear retinoic acid receptor-β (RARβ) probe was obtained from clone RAR-βO as described (Brand, N., Petkovich, M., Krust, A., Chambon. P., de the, H., Marchio, A, Tiollais, P., and Dejean, A. Identification of a second human retinoic acid receptor. <i>Nature,</i> 332:850-853, 1988). The N-<i>myc</i> specific probe pNB-1 was obtained from American Type Culture Collection. All filters were reprobed with A 600 base EcoRI/BamHI β-actin fragment in order to confirm comparable loading of samples.

0123<b>Immunocytology</b>. LA-N-5 cells were plated onto tissue culture chamber slides (Nunc, Inc., Naperville, IL) in complete medium in a humidified 5% CO₂ atmosphere-Cells were allowed to attach overnight then treated with the indicated concentrations of NaPA and/or RA. After one week of treatment, cells were washed in PBS and fixed with 2% paraformaldehyde in PBA at pH 7.0, followed by methanol, at 4°C for 10 min each. Endogenous peroxidase activity was eliminated by incubation in 3% H₂O₂ in methanol for 10 min at room temperature. Non-specific antigenic sites were blocked by a 30 min room temperature incubation with 10% normal goat serum in PBS, followed by a 2 hr incubation with primary antibody at 37°C. Anti-N-<i>myc</i> monoclonal antibody NCM II 100 (Ikegaki, N., Bukovsky, J., and Kennett, R.H. Identification and characterization of the NMYC gene product in human neuroblastoma cells by monoclonal antibodies with defined specificities. <i>Proc. Natl. Acad. Sci. USA,</i> 83:5929-5933, 1986) and a non-binding IgG control monoclonal antibody were used as primary antibodies in the reactions. Incubation with primary antibody was followed by sequential incubation with biotinylated goat anti-mouse antibody at room temperature for 30 minutes, Z-avidin-peroxidase conjugates at room temperature for 30 minutes (Zymet Laboratories, Inc., San Francisco, CA), and diaminobenzidine/H₂O₂ (Sigma) at 0.5 mg/ml in 50 mM Tris pH 8 at room temperature for 10 minutes. Cells were washed for 15 minutes in PBS between all steps. Nuclear staining intensity was quantified and analyzed using a Nikon digital image microscope system and image processing and analysis software from Analytical Imaging Concepts (Irvine, CA).

0124<b>Analyse of protein isoprenylation.</b> Cell cultures were incubated with 10 mM phenylacetate and/or 1 <i>µ</i>M RA for 24 hrs in complete medium containing 5 <i>µ</i>M lovastatin. The cells were labeled with RS-[2-¹⁴C]mevalonate (16 <i>µ</i>Ci/ml, specific activity 15 <i>µ</i>Ci/mmol) (American Radiolabled Chemicals, Inc., St. Louis, MO) during the final 15 hours of treatment. Whole cell proteins were extracted, resolved on 10% SDS-polyacrylamide gels, and stained with Coomassie Brilliant Blue. Gels were then dried and exposed to Kodak X-Omat film for 4 days.

0125<b>Morphologic differentiation.</b> NaPA induced neurite outgrowth from LA-N-5 cells. This effect first became apparent after about 3 days of continuous exposure in culture, with maximal increases in the formation of neurites occurring at NaPA concentrations between 5-10 mM. Concentrations less than 1 mM produced no noticeable morphologic effects. No decrease in the percentage of viable cells was detected in the treated cultures as compared with control cultures. However, higher NaPA concentrations (> 10 mM) were found to be toxic over extended culture periods (> 7 days). The cell soma were not markedly altered with NaPA treatment, although a slight increase in the number of intracellular inclusions resembling lipid droplets at NaPA concentrations greater than 5 mM was observable.

0126As extensively reported, RA also induced neurite sprouting from LA-N-5 cells with maximal effects seen at RA concentrations greater than 1 <i>µ</i>M (Abemayor, E., and Sidell, N. Human neuroblastoma cell lines as models for the <i>in vitro</i> study of neoplastic an neuronal cell differentiation. <i>Environ. Health Perspect.,</i> 80:3-15, 1989; Sidell, N., Altman, A., Haussler, M.R., and Seeger, RC. Effects of retinoic acid (RA) on the growth and phenotypic expression of several human neuroblastoma cell lines. <i>Expl. Cell Res.,</i> 148:21-30, 1983; Lando, M, Abemayor, E., Verity, M.A., and Sidell, N. Modulation of intracellular cyclic AMP levels and the differentiation response of human neuroblastoma cells. <i>Cancer Res</i>., 50:722-727, 1990; Sidell, N., Lucas, C.A., and Kreutzberg, G.W. Regulation of acetylcholinesterase activity by retinoic acid in a human neuroblastomace cell line. <i>Expl</i>. <i>Cell Res</i> ., 155:305-309, 1984). In the presence of optimal concentrations of both agents, morphologic differentiation of LA-N-5 was profound. Indeed, treatment with 5 mM NaPA plus 1 µM RA induced cellular clustering and neurite bundle recruitment reminiscent of pseudoganglia formation after only 6-7 days of culture. Longer periods with both agents (-2 weeks) resulted in cultures consisting predominantly of large cellular aggregates connected by thick fascicles of neurites against an elaborate background network of thin fibers. At this point, very few individual cells (those not associated with a cell cluster) could be observed.

0127<b>Proliferation</b>. Figure 10 shows the dose-dependent effects of NAPA treatment on ³H-thymidine incorporation in LA-N-5 cells. It is evident that greater than 65% inhibition was achieved at NaPA concentration of 5mM and- above, while little effect was seen below 1.25 mM. Concentrations above 10 mM were not tested since detachment of cells from the flasks suggested significant toxicity.

0128NaPA and RA were synergistic in their antiproliferative effects on LA-N-5 cells in that combination treatment consistently reduced ³H-thymidine incorporation to lower levels than one would expect from the combined action of two antiproliferative agents acting through independent mechanisms. For example, ³H-thymidine incorporation in the presence of 1.25 mM NaPA was around 90% of control while that with 10^-7M RA was 70%. Both agents together at these concentrations reduced ³H-thymidine incorporation to 30% of control while 63% would be expected from the two agents acting independently of each other (0.90 x 0.70 - 63%). Combination treatment at the highest concentrations tested (NaPA - 5mM; RA - 1 µM) resulted in almost complete cessation of cell growth while each agent alone produced only a partial effect after the 6-day assay period. Cells were cultured in the presence of RA (10^-7 M), NaPA (1.25 mM), RA (10^-7 M) + NaPA (1.25 mM), or in the absence of added compounds as indicated. After 6 days, cultures were assayed for incorporation of [³H]thymidine.

0129<b>Acetylcholinesterase (AChE) activity</b>. Concomitant with neurite outgrowth, AChE activity increases in LA-N-5 cells induced to differentiate with a variety of agents including RA (Lando, M., Abemayor, E., Verity, M.A., and Sidell, N. Modulation of intracellular cyclic AMP levels and the differentiation response of human neuroblastoma cells. <i>Cancer Res</i>., 50:722-727, 1990; Wuarin, L., Verity, M.A., and Sidell, N. Effects of gamma-interferon and its interaction with rerinoic acid on human neuroblastoma cells. <i>Int. J. Cancer</i>, 48:136-144, 1991). To assess whether this biochemical index of neuroblastoma differentiation was associated with NaPA-induced neurite outgrowth, AChE activity was measured in cells treated with various concentrations of NaPA for 6-7 days (Figure 11). As can be seen, AChE was significantly increased at 1.25 mM NapA with maximal increases occurring at 5 mM AChE. In the presence of NaPA and RA, ACHE activity was markedly potentiated over that seen with either agent alone. Thus, as shown in Figure 11, while AChE activities in either NaPA or RA treated cells remained below 40 nm/min/mg protein, levels as high as 150 nm/min/mg protein could be achieved with combination treatments. This activity represents the strongest AChE induction yet observed in LA-N-5 cells using a variety of differentiating agents, either alone or in combination. Although the absolute values of AChe varied from one experiment to another, the pattern was consistent and the results shown in Figure 11 is representative. Generally, the induced increase in AChE activity paralleled the extent and complexity of neurite formation in the LA-N-5 cultures.

0130<b>Susceptibility of LA-N-5 cells to glutamine depletion</b>. In humans, NaPA causes depletion of circulating glutamine due to conjugation of the amino acid to form phenylacetylglutamine, an enzymatic reaction known to take place in the liver and kidney (James, M.O., Smith, R.L., Williams, F.R.S., and Reidenberg, M. The conjugation of phenylacetic acid in man, sub-human primates and some non-primates species. <i>Proc</i>. <i>R. Soc</i>. <i>Lond</i>. <i>B,</i> 182:25-35, 1972). The <i>in vivo</i> reduction in plasma glutamine levels was mimicked <i>in vitro</i> by culturing cells in the presence of lowered glutamine concentrations. Glutamine deprivation showed no significant effect on the growth, morphology, or AChE activity of LA-N-5 cells. Indeed, in the complete absence of exogenous glutamine, LA-N-5 cultures were essentially indistinguishable from those growing in physiological levels of glutamine. Furthermore, both NaPA- and RA-induced differentiation of LA-N-5 cells were unaffected by the absence of glutamine. Thus, glutamine depletion by NaPA could not explain the differentiation-induction effects of this compound on LA-N-5 cells.

0131<b>N-myc expression.</b> Expression of the N-<i>myc</i> oncoprotein has been shown to be rapidly decreased in LA-N-5 and other neuroblastoma cells during RA-induced differentiation (Thiele, C.T., Reynolds, C.P., and Israel, M.A. Decreased expression of N-<i>myc</i> precedes retinoic acid-induced morphological differentiation of human neuroblastoma. <i>Nature</i>, 313:404406, 1985). Nuclei of untreated LA-N-5 cells strongly reacted with the N-<i>myc</i> antibody and showed a marked heterogeneity of staining intensity within the culture as previously reported for neuroblastoma cells in general N., Bukovsky, J., and Kennett, R.H. Identification and characterization of the NMYC gene product in human neuroblastoma cells by monoclonal antibodies with defined specificities. <i>Proc. Natl. Acad. Sci. USA,</i> 83:5929-5933, 1986): This heterogeneity was confirmed by quantitative image analysis of the immunostained cytostide preparations- Cells incubated for greater than 3 days with NaPA or RA showed marked reductions of N-<i>myc</i> expression as indicated by a decrease in the median relative staining intensity from 44 in control cultures to 36 and 29 in NaPA- and RA-treated cultures, respectively. Combination treatment with both NaPA and RA resulted in a further profound decrease in N-<i>myc</i> levels with a mean relative staining intensity of 16.

0132Although NaPA induced a reduction in N-<i>myc</i> protein, no changes were observed in N-<i>myc</i> mRNA expression in short term (3-6 day) cultures. Six-day treatment of LA-N-5 cells with 5 mM NaPA (a condition which consistently reduced N-<i>myc</i> protein levels) demonstrated no apparent difference from untreated cultures in N-<i>myc</i> mRNA levels as assessed by Northern blotting. On the other hand, RA treatment caused a dramatic decrease in the amount of message produced (appromately 60% decrease) as previously reported while combination treatment resulted in message levels similar to that seen with RA alone. In contrast to this tack of effect of NaPA on N-<i>myc</i> RNA in short term cultures, longer treatment with NaPA (> 8 days) induced both a moderate decrease (16%) in N-<i>myc</i> mRNA levels, 64% decrease by RA alone and a profound further reduction (97%) when NaPA is combined with RA.

0133Nuclear retinoic acid receptor-β (RARβ) expression In human neuroblastoma, as in many other tissues, RARβ shows low constitutive expression in untreated cells but is rapidly induced by RA (de The, H., Marchio, A., Tiollais, P., and Dejean, A. Differential expression and regulation of the retinoic acid receptor α and β genes. <i>EMBO J</i>., 8:429-433, 1989; Wuarin, L., Chang, B., Wada, R., and Sidell, N. Retinoic acid upregulates nuclear retinoic acid receptor-α expression in human neuroblastoma. <i>Int. J. Cancer</i> (in press)). RARβ expression was enhanced by NaPA. LA-N-5 cells were treated as indicated with solvent control (C), RA (10^-6 M), NaPA (PA, 5 mM), or RA (10^-6 M) + NaPA (5 mM) for 3 days and analyzed by Northern blotting for RARβ expression. Densitometric scanning indicated a 2.5-fold increase in RARβ mRNA levels induced by NaPA alone compared to controls, a 4-fold increase by RA alone, and a 16-fold increase by combination of NaPA, and RA. All values were normalized to β-actin levels. RARβ mRNA levels were moderately increased by NaPA, while in the presence of both NaPA and RA, the expression of this receptor was markedly enhanced over that seen with RA alone. This effect occurred prior to the morphologic or other phenotypic changes induced by NaPA in LA-N-5 cells.

0134<b>Effects of NaPA on protein isoprenylation</b>. Active <i>de novo</i> synthesis of cholesterol and isoprenoids from precursors such as acetyl-CoA and mevalonate (MVA) is an important feature of developing neuronal tissue (Grossi, E., Paoletti, P., and Paoletti, R. An analysis of brain cholesterol and fatty acid biosynthesis. <i>Arch. Int. Physiol. Biochem</i>., 66:564-572, 1958). As such, protein prenylation has been shown to be an important post-translational process critical for normal regulation of cell growth and differentiation (Marshall, C.J. Protein prenylation: A mediator of protein-protein interactions. <i>Science,</i> 259:1865-1866, 1993; Braun, P.E., De Angelis, D., Shtybel, W.W., and Bernier, L. Isoprenoid modification permits 2', 3'-cyclic nucleotide 3'-phosphodiesterase to bind to membranes. <i>J. Neurosci. Res.</i> 30:540-544, 1991). As discussed elsewhere herein, NaPA inhibits protein isoprenylation and MVA decarboxylation in human glioblastoma cells. This effect is also observed in embryonic brain in phenylketonuria, an inborn error of phenylalanine metabolism which is associated with excessive production of phenylacetate (Scriver, C.R., and Clow, C.L. Phenylketonuria: epitome of human biochemical genetics. <i>N. Engl</i>. <i>J. Med.</i>, 303:1394-1400, 1980; Castillo, M., Zafra, M.F. and Garcia-Peregrin, E. Inhibition of brain and liver 3-hydroxy-3-methylglutaryl-CoA reductase and mevalonate-5-pyrophosphate decarboxylase in experimental hyperphenyalaninemia. <i>Neurochem</i>. <i>Res</i>., 13:551-555, 1988). Inhibition experiments show that NaPA, but not RA, inhibited protein isoprenylation in LA-N-5 neuroblastoma. LA-N-5 cells were treated as indicated with solvent control, RA (10^-6 M), NaPA (10 mM), or RA (10^-6 M) + NaPA (10 mM) for 24 hrs, and analyzed for protein isoprenylation after labeling with RS-[2-¹⁴C]mevalonate. Furthermore, in the presence of NaPA and RA, these effects were similar to that induced with NaPA alone.

0135NaPA induced the differentiation of the LA-N-5 human neuroblastoma cell line as assessed by dose-dependent growth inhibition, neurite outgrowth, increased AChE activity, and reduction of N<i>-myc</i> expresssion. As discussed herein, NaPA was shown to reduce the malignant phenotype of promyelocytic leukemia, prostate cancer, and glioblastoma cells. The ability of NaPA to selectively arrest tumor growth and promote differentiation was confirmed using rats with malignant brain tumors (described herein). The data confirms and extends data showing NaPA-induced morphologic differentiation, growth inhibition, and reduction of N-<i>myc</i> protein levels in two other human neuroblastoma cell lines (Cinatl, J., Cinatl, J., Mainke, M., Weissflog, A., Rabenau, H., Kornhuber, B., and Doerr H-W. <i>In vitro</i> differentiation of human neuroblastoma cells induced by sodium phenylacetate. <i>Cancer Lett</i>., 70:15-24,1993). NaPA and RA synergized in inducing LA-N-5 differentiation. Thus, combination treatment with NaPA and RA at concentrations that were saturating in terms of a differentiation response with each agent alone caused further marked enhancement of all parameters measured. Furthermore, at all concentrations, combination treatment consistently induced LA-N-5 differentiation to a level that was greater than would be expected from two agents acting independently of each other. Indeed, the combined effects of both agents represent the strongest differentiation response yet observed by neuroblastoma cells, both in terms of number of cells responding and maturational level achieved.

EXAMPLE 6

: Antiproliferative effect on Neuroblastoma Cell Lines

0136<b>Cell lines</b>. In a related experiment, seven human neuroblastoma cell lines were used with varying characteristics relating to neurotransmitter phenotype, N-<i>myc</i> amplification, N-<i>ras</i> and p53 expression, neurocrest lineage response, and sensitivity to retinoic acid-induced differentiation. Table 7 below summarizes some important characteristics of the seven lines. <tables id="tabl0009" num="0009"><table frame="all"><title>Table 7.</title><tgroup cols="5" colsep="1" rowsep="1"><colspec colnum="1" colname="col1" colwidth="31.50mm" /><colspec colnum="2" colname="col2" colwidth="31.50mm" /><colspec colnum="3" colname="col3" colwidth="31.50mm" /><colspec colnum="4" colname="col4" colwidth="31.50mm" /><colspec colnum="5" colname="col5" colwidth="31.50mm" /><thead valign="top"><row rowsep="1"><entry namest="col1" nameend="col5" align="left">Neuroblastoma Cell Lines</entry></row><row><entry namest="col1" nameend="col1" align="center">Cell Line</entry><entry namest="col2" nameend="col2" align="center">Neurotransmitter phenotype</entry><entry namest="col3" nameend="col3" align="center">Changes induced by retinoic acid</entry><entry namest="col4" nameend="col4" align="center">Number of N-<i>myc</i> copies</entry><entry namest="col5" nameend="col5" align="center">Expression of p53</entry></row></thead><tbody valign="top"><row><entry namest="col1" nameend="col1" align="center">SK-N-AS</entry><entry namest="col2" nameend="col2" align="center">cholinergic</entry><entry namest="col3" nameend="col3" align="center">resistant</entry><entry namest="col4" nameend="col4" align="center">I</entry><entry namest="col5" nameend="col5" align="center">n.d.^a</entry></row><row><entry namest="col1" nameend="col1" align="center">LA-N-5</entry><entry namest="col2" nameend="col2" align="center">mixed</entry><entry namest="col3" nameend="col3" align="center">neuronal differentiation (4+)^b</entry><entry namest="col4" nameend="col4" align="center">50</entry><entry namest="col5" nameend="col5" align="center">1+^c</entry></row><row><entry namest="col1" nameend="col1" align="center">LA-N-2</entry><entry namest="col2" nameend="col2" align="center">cholinergic</entry><entry namest="col3" nameend="col3" align="center">neuronal differentiation (2+)</entry><entry namest="col4" nameend="col4" align="center">25</entry><entry namest="col5" nameend="col5" align="center">n.d.</entry></row><row><entry namest="col1" nameend="col1" align="center">SK-N-SH-F</entry><entry namest="col2" nameend="col2" align="center">adrenergic</entry><entry namest="col3" nameend="col3" align="center">schwannian transformation</entry><entry namest="col4" nameend="col4" align="center">1</entry><entry namest="col5" nameend="col5" align="center">+ and <i>ras</i>^d</entry></row><row><entry namest="col1" nameend="col1" align="center">SK-N-SH-N</entry><entry namest="col2" nameend="col2" align="center">adrenergic</entry><entry namest="col3" nameend="col3" align="center">neuronal differentiation (3+)</entry><entry namest="col4" nameend="col4" align="center">1</entry><entry namest="col5" nameend="col5" align="center">+ and <i>ras</i></entry></row><row><entry namest="col1" nameend="col1" align="center">LA-N-6</entry><entry namest="col2" nameend="col2" align="center">adrenergic</entry><entry namest="col3" nameend="col3" align="center">growth inhibition only</entry><entry namest="col4" nameend="col4" align="center">1</entry><entry namest="col5" nameend="col5" align="center">n.d.</entry></row><row rowsep="1"><entry namest="col1" nameend="col1" align="center">Lan-1-15N</entry><entry namest="col2" nameend="col2" align="center">adrenergic</entry><entry namest="col3" nameend="col3" align="center">growth inhibition only</entry><entry namest="col4" nameend="col4" align="center">100</entry><entry namest="col5" nameend="col5" /></row></tbody></tgroup><tgroup cols="5" colsep="0" rowsep="0"><colspec colnum="1" colname="col1" colwidth="31.50mm" /><colspec colnum="2" colname="col2" colwidth="31.50mm" /><colspec colnum="3" colname="col3" colwidth="31.50mm" /><colspec colnum="4" colname="col4" colwidth="31.50mm" /><colspec colnum="5" colname="col5" colwidth="31.50mm" /><tbody valign="top"><row><entry namest="col1" nameend="col5" align="justify">^anot determined</entry></row><row><entry namest="col1" nameend="col5" align="justify">^brelative differentiation response</entry></row><row><entry namest="col1" nameend="col5" align="justify">^crelative expression of p53</entry></row><row><entry namest="col1" nameend="col5" align="justify">^dalso possesses a mutationally activated N-<i>ras</i></entry></row></tbody></tgroup></table></tables>

0137The prototype and best characterized line is LA-N-5, which, like the majority of human neuroblastoma cell lines, contains amplified copies ofN-myc and is sensitive to differentiation induction by retinoic acid. As such, LA-N-5 was the best defined model system to address specific questions relating to the reversibility of PA and PB and the relationship of treatment duration to agent concentration.

0138<b>Antiproliferative effects of PA and PB on human neuroblastoma cells.</b> Figure 12 shows the concentration-dependent effects of PA and PB on incorporation of [³H]thymidine in the seven cell lines after 7 days of treatment. As can be seen, in six of seven lines, greater than 95% inhibition was achieved at the highest PB concentration tested (4 mM) with the same cell lines exhibiting greater than 70% inhibition at 2 mM PB. One line, LA-N-6, was found to be less sensitive to PB by showing little growth inhibition at concentrations less than 4 mM,

0139In all cases, the neuroblastoma lines were less sensitive to growth inhibition by PA than by PB. Table 8 extrapolates from Figure 12, the concentrations of PA and PB that can induce a 50% growth inhibition in the cell lines (GI₅₀). As is seen, the three lines least sensitive to PA (LA-N-2, SK-N-SH-N, and LA-N-6) were also the least sensitive to PB. However, the converse was not true; SK-N-AS was the most sensitive to growth inhibition by PA but was not the most sensitive to PB. No obvious correlation was seen between the general characteristics of the cell lines as shown in Table 8 and their growth inhibition by PA or PB. <tables id="tabl0010" num="0010"><table frame="all"><title>Table 8.</title><tgroup cols="3" colsep="1" rowsep="1"><colspec colnum="1" colname="col1" colwidth="52.50mm" /><colspec colnum="2" colname="col2" colwidth="52.50mm" /><colspec colnum="3" colname="col3" colwidth="52.50mm" /><thead valign="top"><row rowsep="1"><entry namest="col1" nameend="col3" align="left">Growth Inhibition of Cell Lines</entry></row><row rowsep="1"><entry namest="col1" nameend="col1" align="center">Cell Line</entry><entry namest="col2" nameend="col2" align="center">GI₅₀ (mM) PA</entry><entry namest="col3" nameend="col3" align="center">Values of PB</entry></row></thead><tbody valign="top"><row><entry namest="col1" nameend="col1" align="center">SK-N-AS</entry><entry namest="col2" nameend="col2" align="center">1.8</entry><entry namest="col3" nameend="col3" align="center">0.8</entry></row><row><entry namest="col1" nameend="col1" align="center">LA-N-5</entry><entry namest="col2" nameend="col2" align="center">3.5</entry><entry namest="col3" nameend="col3" align="center">0.6</entry></row><row><entry namest="col1" nameend="col1" align="center">LA-N-2</entry><entry namest="col2" nameend="col2" align="center">10.0</entry><entry namest="col3" nameend="col3" align="center">1.6</entry></row><row><entry namest="col1" nameend="col1" align="center">SK-N-SH-F</entry><entry namest="col2" nameend="col2" align="center">4.5</entry><entry namest="col3" nameend="col3" align="center">&lt;0.5</entry></row><row><entry namest="col1" nameend="col1" align="center">SK-N-SH-N</entry><entry namest="col2" nameend="col2" align="center">8.5</entry><entry namest="col3" nameend="col3" align="center">1.5</entry></row><row><entry namest="col1" nameend="col1" align="center">LA-N-6</entry><entry namest="col2" nameend="col2" align="center">10.0</entry><entry namest="col3" nameend="col3" align="center">3.0</entry></row><row rowsep="1"><entry namest="col1" nameend="col1" align="center">Lan-1-15N</entry><entry namest="col2" nameend="col2" align="center">4.5</entry><entry namest="col3" nameend="col3" align="center">0.5</entry></row></tbody></tgroup></table></tables>

0140These results indicate that, as a histological group, human neuroblastoma cells are very sensitive to growth inhibition by PB and PA. In observing morphologic changes that occurred during the PA and PB treatments, general features of neurite extension, and cellular clustering in all of the cell lines were also noted. Thus, although PB- and PA-induced neurotransmitter changes in the various tines have not yet been quantitated, the morphologic changes observed suggest that neuronal differentiation is a general feature in the response of human neuroblastoma cells to PB and PA.

0141<b>Dose- and time-dependent effects ofPBand PA on neuroblastoma cells</b>. LA-N-5 cells were treated with PB and PA at doses ranging from 0.5 to 4 mM and 1.25 to 10 mM respectively, and [³H]thymidine incorporation (as a measure of growth) and acetylcholinesterase (as a measure of differentiation) were assessed over the next 8 days. As seen in Figure 13A, cells incubated with 2 or 4 mM PB demonstrated a decrease in [³H]thymidine incorporation as early as two days after the start of culturing while those incubated with 0.5 and 1 mM PB showed significant inhibition only after four days of treatment. The highest concentrations of PB (4 mM) seemed to induce a cytotoxic effect which was reflected by a progressive decrease in cell viability (as assessed by trypan blue exclusion) starting on the fourth day of culturing. No decrease in the percentage of viable cells was detected in cultures treated with the other concentrations of PB. A similar inverse relationship between agent concentration and treatment time needed to show significant growth inhibition was noted for PA (Figure 13B). However, in agreement with Figure 12, PA was less effective than PB in that significant growth inhibition was first noted only after 3 days at the highest (10 mM) PA concentration tested. It took at least four days for all other concentrations of PA to induce growth inhibition of LA-N-5 cells.

0142Induction of AChE activity by PB and PA generally occurred quicker than did growth inhibition induced by these agents (Figure 14). LA-N-5 cells cultured with all concentrations ofPB showed a dose-dependent enhancement in AChE activity starting on the very first day of treatment and progressively increased to day 4. After this time (day 6 and 8), AChE levels generally leveled off with the exception of a sharp decrease seen in the presence of 4 mM PB. This decrease probably reflected the reduced viability of these cultures as described above: With PA, AChE activity in LA-N-5 cultures also showed a time- and dose-dependent increase, but this effect progressed with all concentrations up to the last day of measurement (day 8). Studies on the reversibility of PA and PB treatment (below) suggest that AChE levels continue to increase in PA-treatment cultures up to 2 weeks or beyond.

0143<b>Reversibility of PB and PA effects on growth and AChE activity</b>. LA-N-5 cells were cultured with either solvent control, 2 mM PB, or 5 mM PA for 6 days, then washed and refed with either control medium or medium containing the agent at the original treatment concentration. [³H]thymidine incorporation (Figure 15) and specific AChE activity (Figure 16) were then assessed starting 1 day after washing (posttreatment) and various days thereafter. As can be seen in Figure 15, up to 7 days after treating cells with PA, [³H]thymidine incorporation in cultures refed with control medium continued to slowly increase at basically the same rate as those refed with PA. However, after 1 week posttreatment, cells refed in control medium showed a higher rate of proliferation than those cultured in the continuous presence of PA. A similar slow reversibility was seen with PB in that very little growth was seen for up to 7 days posttreatment in cultures refed with either control or PB-containing medium, but following this time period the two growth curves diverged. The slow steady increase in [³H]thymidine incorporation seen in the continuous presence of 5 mM PA for posttreatment periods even up to 14 days (20 days total treatment time) suggests either that this concentration of PA is not totally suppressing cell growth or that discrete populations of LA-N-5 cells with variable resistance to the agent are present in the culture. In contrast, cells grown in the continuous presence of PB for up to 20 days did not show any growth, suggesting a more complete suppression than with PA and/or a lack of resistant populations. However, even the profound antiproliferative effect of PB appeared to be somewhat reversible under the conditions of this experiment.

0144Measurements of AChE activity following the 6 days of culturing with the agents supports a conclusion that the effects of both PA and PB on the growth and differentiation of LA-N-5 is reversible under the conditions imposed. As seen in Figure 16, the increased AChE activity originally induced by PA and PB returned to baseline values after 1 week posttreatment. In those cultures refed with PB, AChE activity remained elevated to a more or less constant level. On the other hand, in cultures refed with PA, specific AChE activity continued to increase even up to the 7-day posttreatment time point, eventually reaching levels greater than that achieved with PB. This latter observation suggests that induction of AChE (and presumably differentiation) by PA is a relatively slow process and may requite many weeks of continuous exposure to the drug before its full differentiation-inducing potential is realized.

EXAMPLE 7

: NaPA in combination with Flavonoids and Lignins

0145Futhermore, PA and its analogs may similarly also be used in combination with flavonoids and lignins, as well as with retinoids as described above. For instance, PA and apigenin (a flavonoid) act in a synergistic manner to suppress the growth of human prostatic carcinoma PC3 cells. Similar results were observed when PA was used in combination with 9-<i>cis</i>-retinoic acid. The 9-<i>cis-</i>RA (and its precursors, including all-<i>trans</i>-RA as discussed above) activate the nuclear receptor RXR, which is required for the stimulation of PPAR (described herein and in the copending application) by PA and its analogs.

0146PC3 cells were treated with 1) 10 µM EtOH (control), 2) PA 4mM, 3) apigenin 10 µM, 4) apigenin 10 µM in combination with PA 4 mM, 5) 9-<i>cis</i>-RA 2 µM and 6) 9-<i>cis-</i>RA 2 µM in combination with PA 4 mM. The combination therapies showed significant, potentiated reduction (apigenin/PA approximately 50% and 9-<i>cis</i>-RA/PA approximately 50%) in PC3 cell survival rates.

0147In addition, the flavonoid quercetin, which is known to Mock the efflux of PA from plant cells, may be used in combination with PA to enhance the therapies described herein.

SECTION K:

NAPA AND NAPB - LOVASTATIN COMBINATION TREATMENT

0148Malignant gliomas are highly dependent on the mevalonate (MVA) pathway for the synthesis of cholesterol and intermediates critical to cell replication. Targeting MVA synthesis and/or utilization thus inhibits tumor growth without damaging normal brain tissues, in which the MVA pathway is minimally active. Human gliobastoma cells were found to be uniquely vulnerable to lovastatin (LOV) and sodium phenylacetate (NaPA) which act as inhibitors of the key regulatory enzymes HMG-coA reductase and MVA-PP decarboxylase, respectively.

EXAMPLE 8

: NaPA combination therapies with vastatins such as lovastatin

0149<b><i>In vitro</i> testing.</b> Monotherapies of both LOV (see Table 9) and NaPA are effective (induction of cytostasis and phenotypic reversion) against gliomas in laboratory models and in man (described herein). However, when combined, the two drugs act synergistically to suppress glioma cell proliferation and induce reversion to a benign phenotype. Specifically, treatment of human glioblastoma A172 cells with pharmacologically achievable, yet suboptimal concentrations of LOV (0.1-0.5 µM) combined with NaPA (1-3 mM) resulted in: (a) complete arrest of tumor cell replication (see Figure 17); (b) over 90% decline in invasive capacity (see Figure 18); and (c) profound inhibition of expression of TGF-β2, coding for a 12.5-kD protein implicated in glioma autocrine growth, angiogenesis, and tumor-induced immunosuppression. Synergy between NaPA and LOV could be due to the ability of each to block the MVA pathway at distinct regulatory sites, leading to inhibition of protein isoprenylation. Furthermore,. NaPA may further induce tumor cytostasis and differentiation through additional mechanisms such as DNA hypomethylation, activation of nuclear receptors involved in growth control and glutamine depletion. <tables id="tabl0011" num="0011"><table frame="all"><title>Table 9:</title><tgroup cols="2" colsep="1" rowsep="0"><colspec colnum="1" colname="col1" colwidth="78.75mm" /><colspec colnum="2" colname="col2" colwidth="78.75mm" /><thead valign="top"><row rowsep="1"><entry namest="col1" nameend="col2" align="left">Gliomas are Uniquely Vulnerable to Lovastatin Treatment</entry></row><row rowsep="1"><entry namest="col1" nameend="col1" align="left">Cell Type</entry><entry namest="col2" nameend="col2" align="left">Conc. of LOV required for 50% or more inhibition of tumor replication</entry></row></thead><tbody valign="top"><row><entry namest="col1" nameend="col1" align="left">Glioblastoma (A172, U87, U251)</entry><entry namest="col2" nameend="col2" align="left">0.2-2 µM</entry></row><row><entry namest="col1" nameend="col1" align="left">Melanoma (1011)</entry><entry namest="col2" nameend="col2" align="left">20 µM</entry></row><row><entry namest="col1" nameend="col1" align="left">Lung Adenocarcinoma (A549)</entry><entry namest="col2" nameend="col2" align="left">7 µM</entry></row><row><entry namest="col1" nameend="col1" align="left">Prostate Cancer (PC3)</entry><entry namest="col2" nameend="col2" align="left">5 - 10 µM</entry></row><row><entry namest="col1" nameend="col1" align="left">Neuroblastoma (C1300)</entry><entry namest="col2" nameend="col2" align="left">25 µM^a</entry></row><row rowsep="1"><entry namest="col1" nameend="col1" align="left">EJ Bladder Carcinoma</entry><entry namest="col2" nameend="col2" align="left">16 µM^b</entry></row></tbody></tgroup><tgroup cols="2" colsep="0" rowsep="0"><colspec colnum="1" colname="col1" colwidth="78.75mm" /><colspec colnum="2" colname="col2" colwidth="78.75mm" /><tbody valign="top"><row><entry namest="col1" nameend="col2" align="justify">^aMaltese et al., 1985.</entry></row><row><entry namest="col1" nameend="col2" align="justify">^bSebti et al., 1991.</entry></row></tbody></tgroup></table></tables>

0150<b><i>In vivo</i> testing</b>. Lovastatin was administered orally to 13 patients with refractory grade 3 and 4 astrocytomas at doses ranging from 30 to 35 mg/kg/day for seven consecutive days every four weeks. Activity was documented in four patients: 1 partial and 1 minor response, as well as disease stabilization for over six months in 2 additional patients. Performance status improved from 20 to 40% on Karnofsky's scale. NaPA (dose range 15 to 40 grams/24 h) was administered by continuous or interrupted intravenous infusions (CIVI) to 12 patients with similar histologies and clinical courses. Four patients exhibited clinical improvement: 2 minor responses and 2 disease stabilizations with significant improvement in performance status (1 for over 8 months, the other for over 1 month). Both modes of administration were associated with clinical activity (daily serum concentrations, mean±S.D.: 174±97 µg/ml).

0151Early clinical experience with NaPA and LOV, individually, showed activity in patients with high grade gliomas at well tolerated doses. Interestingly, one patient who failed to respond to LOV, showed objective and clinical improvement upon treatment with NaPA, indicating that there may be no cross-resistance to these drugs. NaPA and LOV apparantly do not have overlapping toxicities. While the dose-limiting toxicity of NaPA (serum concentration over 900 µg/ml) is reversible CNS toxicity, rhabdomyolysis-induced myopathy was seen with LOV (at 35 mg/kg/day) (readily controlled by oral ubiquinone supplementation). Thus administration of NaPA in combination with LOV is beneficial to glioma patients without signficant side effects or risk of toxicity.

SECTION L:

NAPA AND NAPB EFFECTS ON MELANOMA CELL LINES

0152The increased incidence of melanoma and the poor responsiveness of disseminated disease to conventional treatments call for the development of new therapeutic approaches. phenylacetate, a nontoxic differentiation inducers can suppress the growth of other neuroectodermal tumors, i.e., gliomas, in laboratory models and in man. This led to exploration of the efficacy of phenylacetate and related aromatic fatty acids in malignant melanoma. Phenylacetate and phenylbutyrate were found to: (a) induce selective cytostasis and maturation of cultured human melanoma cells, (b) modulate the expression of genes implicated in tumor metastasis (collagenase type I, TIMP) and immunogeneicity (HLA class 1); and, (c) enhance the efficacy of other agents of clinical interest, including retinoids, interferon alpha, suramin, and 5-aza-2'-deoxycytidine. Reflecting on the phenotypic heterogeneity of melanoma, the degree of biological alteration induced by phenylacetate/phenylbutyrate varied significantly among the tumor cell lines tested. While losing invasive capacity and tumorigenicity in athymic mice, poorly differentiated cells exhibited only a marginal changes in morphology, remained amelanotic, and resumed growth after treatment was discontinued. By contrast, treatment of melanoma cells that were in a more advanced stage of maturation resulted in profound alterations in cell growth, morphology and pigmentation consistent with terminal differentiation. Concentrations of phenylacetate and phenylbutyrate affecting tumor cell biology <i>in vitro</i> have been achieved in humans with no significant toxicities, suggesting clinical efficacy of these drugs in the treatment of malignant melanomas.

EXAMPLE 9

: NaPA treatment of melanoma cells

0153<b>Cell Cultures and Reagents</b>. The SKMEL 28, G361 and RPMI melanoma cell lines were from the American Type Culture Collection (ATCC, Rockville, MD). A375 was a gift from J. Fidler (MD Anderson, Houston, TX). Melanoma lines 624 mel, 501 mel, 888 mel and 1011 mel were established from patients seen at the Surgery Branch NCI. These tumor cell lines as well as normal human melanocytes were kindly provided by J. Weber (NCI, Bethesda MD). All tumor cultures were maintained in RPMI 1640 supplemented with 10% heat-inactivated fetal calf serum (Gibco Laboratories), antibiotics, and 2 mM L-glutamine. Primary melanocyte cultures were maintained in Melanocyte Basal Medium (Clonetics, San Diego, CA). The sodium salts of phenylacetic acid (NaPA) and phenylbutyric acid (NaPB) were provided by Elan Pharmaceutical Research Corp., Gainesville GA.

0154PAG was synthesized by the reaction of phenylacetychloride with glutamine (Thierfelder, H., and Sherwin, C.P. (1914): Phenylacetyl-Glutamin, ein Stoffwechsel-product des Menschliechen Korpers (o") nach Eingabe von Phenyl-assigsaure (a"). <i>Ber</i>. <i>chem. Ges</i>. 47:2630-2634). Briefly, 7.5g ghrtarnine (Aldrich, Milwaukee, WI) and 8.4g NaHCO₃ were added to 200 ml H₂O, and the mixture was adjusted to pH 10. While stirring vigorously, 7.5g of phenylacetylchloride (Milwaukee, WI) was added dropwise over the course of 1 hr. When the last of the phenylacetylchloride had dispersed, the solution was adjusted to pH 2, extracted twice with hexane, and taken to dryness. The dried powder was rinsed with hexane and dissolved in a minimum of boiling H₂O. Crystallized PAG having the convert melting range and a lean HPLC profile was confirmed. Suramin was from Mobay Chemical Corp. (New York, NY). Interferon-alpha (Referon-A) was purchased from Hoffmann La-Roche Inc. (Nutley, NJ). 5AzadC and all-<i>trans</i>-RA were from Sigma (St. Louis, MO).

0155<b>Analysis of Cell Proliferation and Viability</b>. Growth rates were determined by cell enumeration using a hemocytometer following detachment with trypsin/EDTA, and by an enzymatic assay using 3-[4,5-dimethylthiazol-2-yl]-2,5-diphenyltertrazolium bromide (MTT) (Alley, M.C., Scudiero, D.A., Monks, A., Hursey, M.L., Czerwinski, M.J., Fine, D.L., Abbott, B.J., Schoemaker, R.H., Boyd, M.R. (1988): Feasibility of drug screening with panels of human tumor cell lines using a microculture tetrazolium assay. <i>Cancer Res</i>. 48:589-601). The two assays produced essentially the same results. DNA synthesis was determined by metabolic labeling with [³H] deoxythymidine (6.7 Ci/mmol) (New England Nuclear). Cell viability was assessed by trypan blue exclusion.

0156<b>Immunocytochemistry</b>. Cells were immunostained with anti-vimentin monoclonal antibodies using Dako PAP kit K537 (Dako Corporation, CA).

0157<b>Invasion Through Matrigel</b>. The ability of tumor cells to degrade and cross tissue barriers was assessed by an <i>in vitro</i> invasion assay that utilizes matrigel, a reconstituted basement membrane. Quantitative analysis was performed using Biocoat Matrigel invasion chamber (Becton Dickinson Labware, Bedford MA) according to manufacturer's instructions.

0158<b>Tumor Formation in Athymic Mice</b>. Cells (5x10⁵ cells per site) were injected s.c. into 4-6 week old female athymic nude mice (Division of Cancer Treatment, NCI animal Program, Frederick Cancer Research Facility). The number and size tumors were recorded after 4 weeks.

0159<b>Quantitation of Melanin Production.</b> Melanin content was measured by the calorimetric method described by Whittaker (Whittaker, J.R. (1963): Changes in melanogenesis during the dedifferentiation of chick retinal pigment cells in cell culture. <i>Dev. Biol.</i> 8:99-127). Briefly, tumor cells were plated at 1-2x10⁶ cells per point) by the addition of 0.5 ml. of deionized water with 2 cycles of freezing and thawing. Perichloric acid was added to a final concentration of 0.5 N and the suspension was kept on the ice for 10 min, then centrifuged at 15,000 rpm for 5 min. The pellets were extracted twice more with 0.5 N HClO₄, followed by two extractions with a cold mixture of ethyl alcohol:ethyl ether (3:1, v/v) and final extraction with ethyl ether. The pellets were air dried, 1 ml 0.85 N KOH was added, and then dissolved by heating to 100°C for 10 min. After insoluble residue was pelleted and the supernatant was cooled to room temperature and the absorbance at 400 nm was read in a double beam spectrophtometer (UV-160A, Shimadzu Corporation, Kyoto, Japan). A standard curve was constructed by using synthetic melanin (Sigma) dissolved in hot KOH at concentrations ranging from 5 to 150 µg/ml. The relative melanin content is expressed as the absorbance at 400 nm per 5x10⁶ cells/ml.

0160<b>Northern Blot Analysis.</b> Messenger RNA was extracted from treated and control cells by Invitrogen mRNA isolation kit (San Diego, CA). Samples (5 µg/lane) were electrophoresed through 1% agarose/formaldehyde gels and blotted onto nytran membranes (Schleicher &amp; Schuell, Keene NH), UV-cross-linked, and hybridization with ³²P-labeled specific probes. Tyrosinase cDNA probe was kindly provided by Y. Kawakami (NCI, Bethesda MD). The probe for collagenase IV was 305 base pair PCR insert of p16SPT19-1 (human 72 kDa type IV collagenase cDNA), subcloned into the EcoRl/BamHl site of Bluescript SK-(2961 Base pairs). The β-actin probe (Oncor Inc., Gaithersburg MD), was used as control to ensure equal loading of the samples.

0161Probes were labeled with ³²P dCTP (NEN) using a random primed DNA labeling kit (Ready-To-Go, Pharmacia P-L-Biochemicals, UK). Membranes were hybridized with probes (according to the Quikhyb protocol provided by Stratagene, La Jolla, CA) at 68°C for 1 hour and washed twice for 15 min each at room temperature with 2X standard saline-citrate/0.1X sodium dodecyl sulfate, and once at 60°C for 30 min with 0.1X standard saline-citrate/0.1X sodium dodcyl sulfate. Autoradiography was performed using Kodak XAR5 films at -70°C with intensifying screens.

0162<b>Inhibition of Melanoma Cell Proliferation by NaPA and NaPB.</b> Exposure of human melanoma cells to NaPA or NaPB resulted in a dose-dependent growth arrest evident after three or more days of continued treatment (Table 10). The decline in cell proliferation was accompanied by similarly reduced DNA synthesis, but there was no change in cell viability. Compared to NaPA, NaPB was significantly more potent in inducing cytostasis, with IC₅₀ values ranging in seven of the eight tested cell lines between 0.15 and 1.0 mM, versus 2.0 - 5.7 mM for NaPA. Reflecting on the heterogenous response of melanoma cells, RPMI cells were more resistant, requiring 8.4 mM NaPA or 1.5 mM NaPB to cause 50% inhibition of growth. However, primary normal melanocytes were even less sensitive, with IC₅₀ of NaPA and NaPB being 11.0 mM and 2.8 mM, respectively. Phenylacetylglutamine (PAG), the end-metabolite of NaPB and NaPA in humans, had no significant effect on tumor cell growth even at doses as high as 10 mM. <tables id="tabl0012" num="0012"><table frame="all"><title>Table 10:</title><tgroup cols="3" colsep="1" rowsep="0"><colspec colnum="1" colname="col1" colwidth="52.50mm" /><colspec colnum="2" colname="col2" colwidth="52.50mm" /><colspec colnum="3" colname="col3" colwidth="52.50mm" /><thead valign="top"><row rowsep="1"><entry namest="col1" nameend="col3" align="left">Growth Inhibition of Human Melanoma Cells by NaPA and NaPB</entry></row><row rowsep="1"><entry namest="col1" nameend="col1" /><entry namest="col2" nameend="col3" align="center">IC₅₀, mM</entry></row><row rowsep="1"><entry namest="col1" nameend="col1" align="left">Cell Line</entry><entry namest="col2" nameend="col2" align="left">NaPA</entry><entry namest="col3" nameend="col3" align="left">NaPB</entry></row></thead><tbody valign="top"><row><entry namest="col1" nameend="col1" align="left">624 mel</entry><entry namest="col2" nameend="col2" align="left">5.0</entry><entry namest="col3" nameend="col3" align="left">1.0</entry></row><row><entry namest="col1" nameend="col1" align="left">501 mel</entry><entry namest="col2" nameend="col2" align="left">2.0</entry><entry namest="col3" nameend="col3" align="left">0.15</entry></row><row><entry namest="col1" nameend="col1" align="left">888 mel</entry><entry namest="col2" nameend="col2" align="left">5.2</entry><entry namest="col3" nameend="col3" align="left">1.6</entry></row><row><entry namest="col1" nameend="col1" align="left">1011 mel</entry><entry namest="col2" nameend="col2" align="left">4.7</entry><entry namest="col3" nameend="col3" align="left">0.6</entry></row><row><entry namest="col1" nameend="col1" align="left">A375M</entry><entry namest="col2" nameend="col2" align="left">4.5</entry><entry namest="col3" nameend="col3" align="left">0.65</entry></row><row><entry namest="col1" nameend="col1" align="left">SKMEL 28</entry><entry namest="col2" nameend="col2" align="left">5.7</entry><entry namest="col3" nameend="col3" align="left">0.75</entry></row><row><entry namest="col1" nameend="col1" align="left">G361</entry><entry namest="col2" nameend="col2" align="left">4.2</entry><entry namest="col3" nameend="col3" align="left">N.D.</entry></row><row rowsep="1"><entry namest="col1" nameend="col1" align="left">RPMI</entry><entry namest="col2" nameend="col2" align="left">8.4</entry><entry namest="col3" nameend="col3" align="left">1.5</entry></row></tbody></tgroup></table></tables> Data represents the mean number of cells in treated versus control cultures, determined after 4 days of continuous exposure to drugs. Cell viability was over 95% in cultures treated with 10 mM NaPA or 3 mM NaPB.

0163<b>Alterations in Morphology and Pigmentation</b>. In addition to affecting tumor cell proliferation, the aromatic fatty acids induced morphological alterations consistent with melanocyte differentiation, including reduced nuclear to cytoplasm ratio, cell flattening with enhanced cytoskeletal organization, and in some cases, development of dendritic processes and increased melanogenesis. The degree of differentiation induced by NaPB/NaPA varied significantly depending on the phenotype of cells at the time treatment was initiated. For example, in A375 cultures, which are composed of amenlanotic epithelial-like cells, only marginal morphological changes could be induced with occasional appearance of dendritic cells, while dramatic alterations were observed in the more differentiated 1011 cultures. Within 3-4 days ofNaPB treatment, 1011 cells appeared enlarged with a markedly increased cytoplasm to nuclear ratio. Moreover, the cells had well organized cytoskeletons (evidenced by staining for vimentin), developed long dendritic processes, and became highly melanotic. Differentiation was progressive, involved the great majority of the cell population, and became a stable trait after 2 weeks of continuous treatment (see below). Consistent with its relative potency as a cytostatic agent, NaPB was more effective than NaPA in promoting terminal differentiation of 1011 cells. Yet, neither drug was capable of inducing major morphological changes nor melanin production in A375M cultures, suggesting endogenous resistance to differentiation.

0164<b>Reversibility of Antitumor Effects</b>. The stability of NaPB-induced cytostasis and differentiation appeared to depend not only on the cells treated but also the duration of exposure to the drug. In 1011 cultures, the doubling time increased from 26±2 hrs to approximately 110 hrs following 4-day or longer treatment with 1.5 mM NaPB. If treatment was discontinued after one week, the doubling time was reduced to 67 hr. However, if the duration was increased to 14 days of continuous exposure to phenylbutyrate, the replication rate was not changed significantly upon cessation of treatment (cell doubling every 96 hrs). This contrasted the finding with A375M cells, which resumed growth in the absence of the drug (doubling time of 20-24 hrs). 1011 mel cells exposed to 1.5 mM NaPB for 14 days had 31.1 µg/ml melanin per 10⁶ cells; three days after treatment was discontinued melanin levels further increased to 39.9 µg/ml. The loss of proliferative capacity, stable morphological change and persistent melanogenesis in 1011 cells are all indicative of a terminal differentiation induced by NaPB.

0165<b>Loss of Invasiveness and Tumorigenicity.</b> Malignant melanoma are highly invasive and metastatic <i>in vivo.</i> Since biologically aggressive cell populations could still exhibit some differentiation markers, including melanogenesis, it was important to further examine the effect of NaPB and NaPA on the malignant phenotype. The ability of A375M, SKMEL 28 and 1011 cells to degrade and cross tissue barriers was assessed by an <i>in vitro</i> invasion assay using a modified Boyden chamber with a matrigel-coated filter. After 3-5 days of continuous treatment with the aromatic fatty acids there was a dose-dependent loss of invasive capacity (Table 11). This <i>in vitro</i> indication of phenotypic reversion correlated with loss of tumorigenicity <i>in vivo</i>: A375M cells treated with NaPA for one week in culture, in contrast to untreated cells, failed to form tumors when transplanted s.c. into athymic mice (Table 11). Almost complete inhibition of invasiveness and tumorigenicity were observed with 5 mM NaPA, a concentration that caused only partial cytostasis, indicating that malignant properties may be more vulnerable than cell proliferation in tissue culture dishes. <tables id="tabl0013" num="0013"><table frame="all"><title>Table 11:</title><tgroup cols="4" colsep="1" rowsep="0"><colspec colnum="1" colname="col1" colwidth="39.37mm" /><colspec colnum="2" colname="col2" colwidth="39.37mm" /><colspec colnum="3" colname="col3" colwidth="39.37mm" /><colspec colnum="4" colname="col4" colwidth="39.37mm" /><thead valign="top"><row rowsep="1"><entry namest="col1" nameend="col4" align="left">Reduced Invasiveness <i>In vitro</i> and Tumorigenicity in Athymic Mice</entry></row><row rowsep="1"><entry namest="col1" nameend="col1" rowsep="0" align="left">Treatment <i>In vitro</i></entry><entry namest="col2" nameend="col2" rowsep="0" align="left">Invasion Through Matrigel^a (% of control)</entry><entry namest="col3" nameend="col4" align="left">Tumor Formation^b</entry></row><row rowsep="1"><entry namest="col1" nameend="col1" /><entry namest="col2" nameend="col2" /><entry namest="col3" nameend="col3" align="left">incidence</entry><entry namest="col4" nameend="col4" align="left">tumor diam., mean (range).</entry></row></thead><tbody valign="top"><row><entry namest="col1" nameend="col1" align="left">None</entry><entry namest="col2" nameend="col2" align="left">100</entry><entry namest="col3" nameend="col3" align="left">8/8</entry><entry namest="col4" nameend="col4" align="left">8.4(2-20)</entry></row><row><entry namest="col1" nameend="col1" align="left">NaPA 2.5 mM</entry><entry namest="col2" nameend="col2" align="left">59±5.5</entry><entry namest="col3" nameend="col3" align="left">3/8</entry><entry namest="col4" nameend="col4" align="left">4.7(0-12)</entry></row><row><entry namest="col1" nameend="col1" align="left">NaPA 5 mM</entry><entry namest="col2" nameend="col2" align="left">22.5±4</entry><entry namest="col3" nameend="col3" align="left">1/8</entry><entry namest="col4" nameend="col4" align="left">2.0</entry></row><row><entry namest="col1" nameend="col1" align="left">NaPB 0.5 mM</entry><entry namest="col2" nameend="col2" align="left">44.1±6.7</entry><entry namest="col3" nameend="col3" align="left">N.D.</entry><entry namest="col4" nameend="col4" align="left">N.D.</entry></row><row rowsep="1"><entry namest="col1" nameend="col1" align="left">NaPB 1.0 mM</entry><entry namest="col2" nameend="col2" align="left">16.1±2.9</entry><entry namest="col3" nameend="col3" align="left">N.D.</entry><entry namest="col4" nameend="col4" align="left">N.D.</entry></row></tbody></tgroup><tgroup cols="4" colsep="0" rowsep="0"><colspec colnum="1" colname="col1" colwidth="39.37mm" /><colspec colnum="2" colname="col2" colwidth="39.37mm" /><colspec colnum="3" colname="col3" colwidth="39.37mm" /><colspec colnum="4" colname="col4" colwidth="39.37mm" /><tbody valign="top"><row><entry namest="col1" nameend="col4" align="justify">^a   A375 cells pre-treated for 4 days were detached and assayed for their ability to invade a reconstituted basement membrane using a matrigel Invasion Chamber. Comparable inhibition of invasiveness was documented with SKMEL 28 and 1011 met cells. Under the experimental conditions used, 2-3 % of the untreated cells invaded the matrigel within 40 hrs (A375M, 1011) or 24 hrs (SKMEL 28).</entry></row><row><entry namest="col1" nameend="col4" align="justify">^b .   A375M cells were pre-treated for one week with NaPA prior to being injected (5 x 10⁵ cells/animal) s.c. into athymic mice. Results indicate tumor incidence (tumor bearing/injected animals) and size of tumors, as determined 4 weeks after cell transplantation.</entry></row></tbody></tgroup></table></tables>

0166<b>Modulation of Gene Expression</b>. The profound changes in tumor biology were associated with alterations in expression of genes critical to maintenance of the malignant phenotype, as well as those that could affect immunogeneicity <i>in vivo</i>. Specifically, cells treated with either NaPA or NaPB had reduced levels of collagenase type IV mRNA, coding for a 72,000 dalton metalloprotease. The latter is involved in degradation of extracellular stroma and basal lamina structures, with the potential to facilitate tumor invasion and metastasis. As with other tumor responses, the degree of changes in gene expression varied among the different cells lines tested.

0167For example, while 5 mM NaPA completely abrogated collagenase IV expression in SKMEL 28 cells, the specific transcript levels were reduced only 2 fold in A375M cells. The decline in collagenase IV in A375 treated with NaPA or NaPB was accompanied by increased expression of its inhibitor TIMP II, suggesting that the net proteolytic activity and, consequently, invasiveness may be significantly reduced by the aromatic fatty acids.

0168Synthesis of the differentation marker melanin is regulated by the enzyme tyrosinase. Both NaPB and NaPA increased (albeit to a different degree) the steady-state levels of tyrosinase mRNA in 1011 cells, which correlated with increased pigmentation. The Northern blot analysis indicated that the treated cells also had approximately 2 fold elevated levels of HLA-A3 mRNA. The results are consistent with previous findings of increased MHC class I antigen expression in human leukemic and prostatic carcinoma cells following treatment with NaPA.

0169<b>Potentiation of Activity of Other Antitumor Agents</b>. Phenotypic heterogeneity is characteristic of tumor lesions in patients with melanoma. The diversity in therapeutic responses of heterogeneous tumor masses would require appropriate combination treatment protocols. Data summarized in Figure 19 indicate that NaPA can significantly enhance the efficacy of other antitumor agents of clinical interest. Over 70% inhibition of melanoma cell proliferation was observed when NaPA was combined with nontoxic, yet suboptimal concentrations of IFN-alpha, all-<i>trans</i>-RA, suramin, or 5AzadC.

0170The findings with melanoma cells lines indicate, however, that NaPB is a more potent modulator of gene expression and cell biology compared to NaPA. The relative potency was confirmed in various hematopoietic and solid tumors including lymphomas, gliomas, and adenocarcinomas of the prostate, breast, ovarian, lung and colon. The latter could be due to the higher lipophilicity of NaPB, or be related to some differences in mechanisms of action. It is possible that, prior to being metabolized to phenylacetate, phenylbutyrate may act in an analogous way to the short fatty acid, butyrate, a well characterized differentiation inducer with therapeutic potential. There are, however, several differences in tumor responses to phenylbutyrate versus butyrate. While the former increased vimentin organization in human melanoma cells, butyrate was reported to decrease vimentin expression in B-16 melanoma cells (Ryan and Higgs 1988). Furthermore, in contrast to NaPB, butyrate failed to induce, and in some cases even inhibited tyrosinase activity and melanization of melanoma cells (Jardena Nordenberg, Lina Wasserman, Einat Beery, Doron Aloni, Hagit Malik, Kurt H. Stenzel, Abraham Novogrodsky (1986): Growth inhibition of murine melanoma by butyric acid and dimethylsulfoxide. <i>Experimental Cell Research</i> 162:77-85). Additional unique attributes of phenylbutyrate with potential clinical implications include its extended half-life (hours, versus minutes for butyrate), and the conversion to phenylacetate, itself a cytostatic and differentiation inducer. Before excretion in the urine, phenylacetate must first be conjugated with glutamine to form PAG. High rates of urinary excretion of PAG associated with NaPA-related therapies, can beneficially deplete plasma glutamine (Simell, O., Sipila, L, Rajantie, J., Valle, D.L., Brusilow, S.W. (1986): Waste nitrogen excretion via amino acid acylation: benzoate and phenylacetate in lysinuric protein intolerance. <i>Pediatric Res.</i> 20:1117-1121), the amino acid critical to tumor growth (Hiroyuki Takahashi, Peter G. Parsons (1990): <i>In vitro</i> phenotypic alteration of human melanoma cells induced by differentiating agents: Heterogeneous effects on cellular growth and morphology, enzymatic activity, and antigenic expression. <i>Pigment Cell Research</i> 3:223-232).

SECTION M:

NAPA AND NAPB - HYDROXYUREA COMBINATION TREATMENT

0171Previous clinical trials have indicated that hydroxyurea could possess some activity against prostate cancer. The <i>in vitro</i> activity of hydroxyurea was evaluated in three hormone-refractory prostate cancer cell lines, PC-3, DU-145, and PC-3M (as measured by the MTT method). Cytotoxicity was noted at concentrations ≥ 100 <i>µ</i>M of hydroxyurea, requiring at least 120 hours of drug exposure (100 <i>µ</i>M was the approximate IC₅₀ for all three cell lines). Based on clinical pharmacokinetic data, a dosing regimen was simulated to produce a hydroxyurea plasma concentration greater than 100 <i>µ</i>M for 120 hours (1 g loading dose, followed by 500 mg every 6 hours for 5 days in a 70 kg man). Since this plasma concentration may result in an unacceptable degree of myelosuppression, <i>in vitro</i> combinations studies were conducted with hydroxyurea and phenylbutyrate, a new differentiating agent. These studies resulted in a reduction of the hydroxyurea concentration necessary for a 50% growth inhibition (50 <i>µ</i>M of hydroxyurea plus 0.5 mM of phenylbutyrate). A regimen designed to achieve that hydroxyurea concentration (400 mg loading dose, followed by 200 mg every 6 hours for 5 days) should be clinically achievable. The combination was further evaluated for use in treatment of patients with Stage D prostate cancer. <tables id="tabl0014" num="0014"><table frame="all"><title>Table 13:</title><tgroup cols="7" colsep="1" rowsep="0"><colspec colnum="1" colname="col1" colwidth="22.50mm" /><colspec colnum="2" colname="col2" colwidth="22.50mm" /><colspec colnum="3" colname="col3" colwidth="22.50mm" /><colspec colnum="4" colname="col4" colwidth="22.50mm" /><colspec colnum="5" colname="col5" colwidth="22.50mm" /><colspec colnum="6" colname="col6" colwidth="22.50mm" /><colspec colnum="7" colname="col7" colwidth="22.50mm" /><thead valign="top"><row rowsep="1"><entry namest="col1" nameend="col7" align="left">Clinical Trials Using Hydroxyurea in Prostate Cancer</entry></row><row rowsep="1"><entry namest="col1" nameend="col1" align="left">Author</entry><entry namest="col2" nameend="col2" align="left">Year</entry><entry namest="col3" nameend="col3" align="left">N</entry><entry namest="col4" nameend="col4" align="left">OR</entry><entry namest="col5" nameend="col5" align="left">SR</entry><entry namest="col6" nameend="col6" align="left">R</entry><entry namest="col7" nameend="col7" align="left">HU Dose</entry></row></thead><tbody valign="top"><row><entry namest="col1" nameend="col1" align="left">Lerner</entry><entry namest="col2" nameend="col2" align="left">1977</entry><entry namest="col3" nameend="col3" align="left">30</entry><entry namest="col4" nameend="col4" align="left">63% (19/30)</entry><entry namest="col5" nameend="col5" align="left">76% (23/30)</entry><entry namest="col6" nameend="col6" align="left">N</entry><entry namest="col7" nameend="col7" align="left">80mg/kg q3dx6wks</entry></row><row><entry namest="col1" nameend="col1" align="left">Kvols</entry><entry namest="col2" nameend="col2" align="left">1977</entry><entry namest="col3" nameend="col3" align="left">5</entry><entry namest="col4" nameend="col4" align="left">60% (3/5)</entry><entry namest="col5" nameend="col5" align="left">NR</entry><entry namest="col6" nameend="col6" align="left">N</entry><entry namest="col7" nameend="col7" align="left">3gm/m² q3d</entry></row><row><entry namest="col1" nameend="col1" align="left">Loening</entry><entry namest="col2" nameend="col2" align="left">1981</entry><entry namest="col3" nameend="col3" align="left">28</entry><entry namest="col4" nameend="col4" align="left">14% (4/28)</entry><entry namest="col5" nameend="col5" align="left">21% (6/28)</entry><entry namest="col6" nameend="col6" align="left">Y</entry><entry namest="col7" nameend="col7" align="left">3gm/m² q3d</entry></row><row><entry namest="col1" nameend="col1" align="left">Mundy</entry><entry namest="col2" nameend="col2" align="left">1982</entry><entry namest="col3" nameend="col3" align="left">22</entry><entry namest="col4" nameend="col4" align="left">36%(8/22)</entry><entry namest="col5" nameend="col5" align="left">68%(15/22)</entry><entry namest="col6" nameend="col6" align="left">N</entry><entry namest="col7" nameend="col7" align="left">80 mg/kg q3d</entry></row><row rowsep="1"><entry namest="col1" nameend="col1" align="left">Stephens</entry><entry namest="col2" nameend="col2" align="left">1984</entry><entry namest="col3" nameend="col3" align="left">69</entry><entry namest="col4" nameend="col4" align="left">4% (1/24)*</entry><entry namest="col5" nameend="col5" align="left">13% (9/69)</entry><entry namest="col6" nameend="col6" align="left">Y</entry><entry namest="col7" nameend="col7" align="left">3.6gm/m² 2d/wk</entry></row></tbody></tgroup><tgroup cols="7" colsep="0" rowsep="0"><colspec colnum="1" colname="col1" colwidth="22.50mm" /><colspec colnum="2" colname="col2" colwidth="22.50mm" /><colspec colnum="3" colname="col3" colwidth="22.50mm" /><colspec colnum="4" colname="col4" colwidth="22.50mm" /><colspec colnum="5" colname="col5" colwidth="22.50mm" /><colspec colnum="6" colname="col6" colwidth="22.50mm" /><colspec colnum="7" colname="col7" colwidth="22.50mm" /><tbody valign="top"><row><entry namest="col1" nameend="col7" align="justify">N = number of patients receiving hydroxyurea OR = objective response (stable, partial, complete) SR = subjective response R = randomized (N = No, Y = Yes) HU Dose = Dose of hydroxyurea *Stable response not reported, and only evaluated patients with soft tissue disease <i>Response criteria varied between trials</i></entry></row></tbody></tgroup></table></tables>

EXAMPLE 10

: NaPA in combination with hydroxyurea - PC-3 and DU - 145 cells

0172Two of the human prostate cell lines (PC-3 and DU-145) were obtained from American Type Culture Collection. Rockville, MD. PC-3M was obtained from James Kozlowski, M.D. at the University of Wisconsin via the NCI Cancer Treatment Screening Program at Frederick, MD. Hydroxyurea was purchased from Sigma Chemical Co., St. Louis, MO. Phenylbutyrate was obtained from Elan Pharmaceutical Research Corporation (Gainesville, GA). Cell culture medium used was RPMI 1640 supplemented with 10% heat inactivated fetal bovine serum (FBS), penicillin 5,000 units/mL, streptomycin 5,000 µg/mL and 2 mM L-glutamine (Gibco Laboratories, Grand Island, NY).

0173The prostatic carcinoma cell lines were propagated in RPMI-1640, which was supplemented with 10% FBS and 1% antibiotics (penicillin and streptomycin). The cells were grown to 80% confluent monolayers (6 x 10⁵ cells/sq. cm) and cultivated in 75-sq. cm flasks (Nunc, Denmark). Cells were harvested with trypsin (0.05%):EDTA (0.02%) (Gibco Laboratories, Grand Island, NY) solution and counted in a hemocytometer. The cells were then seeded into 96 well microtiter plates (CoStar, Cambridge, MA) at a density of 3,000 cells per well in RPMI 1640 medium with 10% FBS and 1% penicillin-streptomycin solution and reincubated for 24 hours to allow for cell reattachment (37°C, 5% CO₂ atmosphere). Hydroxyurea, diluted in tissue culture medium to yield a final well volume of 200 µL, was then added at specified concentrations (0.01, 0.1, 1, 10, 100, 1,000, 10,000, and 100,000 µM) and left undisturbed for 120 hours in the tissue culture incubator. Control cells were grown in an equal volume of medium. The 3-(4,4-dimethyl-2-thiazolyl)-2,5-di-phenyl-2H-tetrazolium bromide (MTT, Sigma Chemical Co., St. Louis, MO) assay was used to estimate cell number (Beckloff GL, Lerner HJ, Frost D, et al. Hydroxyurea (NSC-32065) in biologic fluids: dose-concentration relationship. <i>Cancer Chemother Rep</i> 1965;48:57-8). After exposure to hydroxyurea, MTT (20 µL, 5 mg/mL in PBS) was added to the wells, incubated for 4 hours, and centrifuged at 2,000 g, and the medium was decanted. Dimethyl sulfoxide (150 µL) was added to each well, the plates were shaken for 30 seconds, and the optical density at 540 nm was determined on a kinetic microplate reader (Bio-Tek EC340 Immunoplate-reader).

0174The synergistic activity studies were conducted with PC-3 cells by adding 0.5 mM and 1 mM of phenylbutyrate to 50 µM and 100 µM of hydroxyurea. Similar <i>in vitro</i> conditions and durations of drug exposure were utilized as described above. Cell numbers were determined by hemocytometer.

0175Statistical analysis was performed using the SAS computer program (version 6.02, SAS Institute, Inc., Cary, NC). The mean optical density for the various concentrations of hydroxyurea versus control were compared by an adjusted two-sided Wilcoxon rank-sum test. An alpha of 0.05 was used to detect statistical difference. To determine the relationship between hydroxyurea dose and cell survival, the PC-3 experiments were conducted five times for the PC-3 cell line and three times for both DU-145 and PC-3M. In each experiment there were six wells were concentration. The experiments to determine the optimal duration were performed once with 12 wells per fixed concentrations (five plates for both methods).

0176For all three cell lines there was a dose-dependent decrease in the percentage of cells surviving with hydroxyurea concentrations between 10 and 1,000 µM. At a concentration of 100 <i>µ</i>M there was an approximate 50% reduction in cell survival (42.7%, 45.5%, and 52% for PC-3, DU-145, and PC-3M, respectively) for all three cell lines, compared to untreated cells (p=0.016). Increases in the hydroxyurea concentration above 1,000 µM exerted little further effect on the inhibition of cell growth. At concentrations less than 100 µM, hydroxyurea was only cytostatic, but cytotoxicity increased with increasing concentrations less than 100 µM, 86% of the total cells were viable at 100 µM and 41.9% at 1,000 µM, determined by trypan blue staining (Gibco Laboratories, Grand Island, NY).

0177Two additional experiments were conducted with PC-3 to investigate the relationship between the duration of hydroxyurea exposure and inhibition of cell growth. In the first experiment cell survival was assessed daily, from 24 to 120 hours of exposure, with four different concentrations of hydroxyurea (0.1, 1.0, 10, and 100 µM); the MTT assay was performed immediately upon completion of the specified duration of hydroxyurea exposure. In the second experiment cells were exposed to the same concentrations of hydroxyurea for varying periods of time (24, 48, 72, 96 and 120 hours), but grown for a total of 120 hours before performing the MTT assay. Drug exposure was terminated at the various intervals by replacing drug-containing medium with drug-free medium. This later experiment was performed to detect the possibility of a recovery in cell growth following brief periods of drug exposure. Figure 20 shows the duration of drug exposure versus survival curve of hydroxyurea (100 µM) in PC-3 cells. The cells were exposed to drug for varying periods of time, but all were grown for a total of 5 days (120 hours). Drug exposure was terminated at the various intervals by replacing drug-containing medium with drug-free medium. This experiment did not detect any recovery in cell viability following brief periods of drug exposure. The IC₅₀ was only achieved after 120 hours of exposure. In both experiments there was decrease in the percentage of surviving cells with increasing duration of exposure. There was no evidence of a plateau in the effect by 120 hours, nor of a resurgence in cell growth following drug washout.

0178With increasing concentrations of hydroxyurea there was a marked alteration in PC-3 celt morphology. Specifically, it appears that there was a significant degree of cellular selectivity in the PC-3 cell line when exposed to 100 µM hydroxyurea concentrations compared to control cells. The PC-3 cells are heterogenous and hydroxyurea may have selected cells with a low nucleus/cytoplasm ratio (i.e. large flat cells).

0179The pharmacokinetic model and model parameters used to describe the disposition of hydroxyurea in humans were derived from concentration versus time data previously reported from clinical trials of this drug (Beckloff GL, Lerner HJ, Frost D, et al. Hydroxyurea (NSC-32065) in biologic fluids: dose-concentration relationship. <i>Cancer Chemother Rep</i> 1965;48:57-8; Veale D. Cantwell BMJ, Kerr N. et al. Phase 1 study of high-dose hydroxyurea in lung cancer. <i>Cancer Chemother Pharmacol</i> 1988;21:53-6; Adamson RH, Ague SL, Hess SM, et al. The distribution, excretion and metabolism of hydroxyurea-C14. <i>J. Pharmacol and Exp Therapeut</i> 1965;150:322-7; Belt RJ, Haas CD, Kennedy J, et al. Studies of hydroxyurea administered by continuous infusion. <i>Cancer 1980;46:455-62;</i> Rosner F, Rubin H, Parise F. Studies on the absorption, distribution, and excretion of hydroxyurea (NSC-32065). <i>Cancer Cehmother Rep</i> 1971;55:167-73; Creasey WA, Capizzi RL, DeConti RC. Clinical and biochemical studies of high-dose intermitten therapy of solid tumors with hydroxyurea (NSC-32065). <i>Cancer Chemother Rep</i> 1970;54:191-4; Bolton BH, Woods LA, Kaung DT, et al. A simple method of colorimeteric analysis for hydroxyurea (NSC-32065). <i>Cancer Chemother Rep</i> 1965;46:1-5; Davidson JD, Winter TS. A method of analyzying for hydroxyurea in biological fluids. <i>Cancer Chemother Rep</i> 1963,27:97-110). Curve-stripping techniques (Abbottbase™ Pharmacokinetic System, ver. 1.0) applied to the concentration versus time data following a single oral dose of hydroxyurea (80 mg/kg) indicated that these data were best described by a single exponential decay, allowing a single compartment open linear model to be used in predicting hydroxyurea's pharmacokinetics. The bioavailability of hydroxyurea has never been precisely determined but is reported to be "complete" (Donehower RC. Hydroxyurea. In: Chabner BA, Collins JM, eds <i>Cancer Chemotherapy, Principles and Practice,</i> Philadelphia: JB Lippincott 1990:225-33) hence a bioavailability of 100% was assumed. Estimates of hydroxyurea's total body clearance were obtained using the trapezoidal rule. Using the average parameter values derived from this model (volume of distribution, half-life, and clearance) the hydroxyurea dosing regimen used by Lener et al. (80 mg/kg every third day) was simulated. This regimen provides only very brief exposure to hydroxyurea concentrations with <i>in vitro</i> antiproliferative activity. A regimen of 1.0 g loading dose followed by 500 mg every 6 hours for 5 days in a 70 kg man; this regimen approximates the conditions required <i>in vitro</i> for 50% inhibition of prostate cancer cell growth.

0180Because hydroxyurea plasma concentrations of 100 µM or greater may cause an unacceptable degree of myelosuppression in some patients, the ability of phenylbutyrate to potentiate the efficacy of hydroxyurea was examined. Hydroxyurea at the suboptimal concentration of 50 µM was combined with phenylbutyrate at concentrations of 0.5 mM and 1 mM. A 58% reduction in PC-3 cell growth was achieved when 0.5 mM of phenylbutyrate was added to 50 µM of hydroxyurea. As monotherapy, hydroxyurea (50 µM) reduced cell proliferation by only 38% and phenylbutryate, 0.5 mM and 1 mM, by 38% and 55%, respectively. Approximately 80% inhibition of PC-3 growth was observed when 50 µM hydroxyurea was combined with 1 mM of phenylbutyrate, without affecting viability.

0181In conclusion, the results indicate that a much greater hydroxyurea exposure (i.e. > 100 µM for at least 120 hours), as a single agent, is required for cytotoxic cell death than has been achieved in previous clinical trials. A regimen designed to achieve that concentration would most likely result in unacceptable side effects. However, hydroxyurea in combination with phenylbutyrate has a clinical role in patients with hormone refractory metastatic prostate cancer. This combination regimen requires a relatively low-dose of hydroxyurea (400 mg loading dose followed by 200 mg every 6 hours for 5 days) to produce a concentration of 50 µM, as well as a reduced concentration of phenylbutyrate. The hydroxyurea dose employed may cause a mild reduction in neutrophils, but this reduction should be clinically tolerated. The adverse effects associated with phenylbutyrate should not be additive (i.e., CNS depression) to the myelosuppression associated with hydroxyurea. Based on these results, this combination deserves further evaluation in patients with Stage D prostate cancer.

SECTION N:

NAPA AND NAPB EFFECTS ON MEDULLOBLASTOMA &amp; ASTROCYTOMA DERIVED CELLS

0182Medulloblastoma, and other malignant brain tumors, are heterogeneous with regard to cell morphology, antigenic phenotype and biochemical features. A proportion of cells express a more differentiated phenotype. Malignant transformation of cells does not necessarily abrogate their potential for expression of differentiated characteristics including cessation of proliferation (Sartorelli, AC: Malignant cell differentiation as a potential therapeutic approach. Br. J. Cancer 52:293-302, 1985; Marks PA, Sheffery M, Rifkind RA: Induction of transformed cells to terminal differentiation and the modulation of gene expression. Cancer Res. 47:659-666, 1987). Spontaneous differentiation of medulloblastoma to a non-proliferative state occasionally does occur (DeChadarevian J-P, Montes JL, Govman AM, Freman CR: Maturation of cerebellar neuroblastoma into ganglioneuroma with melanosis. Cancer 59:69-76,1987), indicating that neuroectodermal tumors may be capable of differentiation to an effective signal. These biological features and the current lack of sufficiently effective therapeutic strategies make agents which may induce differentiation of these tumors particularly interesting.

0183The mechanisms by which differentiating agents affect the growth and phenotypic characteristics of responsive cell lines have been studied extensively and although their actions are incompletely understood, a substantial body of evidence indicates that agents such as all-trans retinoic acid (ATRA) interact with autocrine growth control pathways (Falk LA, DeBenedetti F, Lohrey N et al.: Induction of TGFβ1 receptor expression and TGFβ1 protein production in retinoic acid treated HL-60 cells. Blood 77:1248-1255, 1991). A variety of growth factor molecules and their receptors are affected by exposure to differentiating agents such as ATRA. In a number of neoplastic cell lines as well as non-neoplastic cell types, ATRA induces production and secretion of one or more isoforms of TGFβ (Falk LA, DeBenedetti F, Lohrey N et al.: Induction of TGFβ1 receptor expression and TGFβ1 protein production in retinoic acid treated HL-60 cells. Blood 77:1249-1255, 1991).

0184The TGFβ autocrine growth regulatory pathways are of particular interest in primary central nervous system tumors. This pluripotential growth regulator is produced by both primary malignant astrocytoma tissue (Clark WC, Bressler J: TGFβ-like activity in tumors of the central nervous system. J Neurosurg 68:920-924, 1988; Samuels V, Barett JM, Brochman S et al.: Immunocytochemical study of transforming growth factor expression by benign and malignant gliomas. Am J Pathol 134:895-902, 1989) and by cell lines derived from such tumors (Jennings MT, Macina RJ, Carver R et al.: TGFβ1 and TGFβ2 are potential growth regulators for low grade and malignant gliomas <i>in vivo</i> with evidence in support of an autocrine hypothesis. Int. J. Cancer 49:129-139,1991). The immunosuppressive effects of malignant astrocytoma cells on cocultured lymphocytes <i>in vitro</i> has been convincingly linked to TGFβ production and can be partially neutralized by antibodies against TGFβ. TGFβ has been shown to be a growth regulator for gliomas <i>in vitro</i> (Jennings MT, Macina RJ, Carver R et al.: TGFβ1 and TGFβ2 are potential growth regulators for low grade and malignant gliomas <i>in vitro</i> with evidence in support of an autocrine hypothesis. Int. J. Cancer 49:129-139, 1991). The role of the TGFβ pathway in growth regulation of medulloblastoma is less well established than for malignant astrocytomas. The antiproliferative effect of ATRA on Daoy medulloblastoma cells is associated with increased secretion of TGFβ2 and with induction of TGFβ receptor expression. Because the TGFβ family of growth factors plays such an important role in the biology of malignant astrocytomas, the initial focus has been on this potential autocrine pathway.

0185The effects of a nontoxic differentiation inducer, phenylacetate (PA), on neuroectodermal tumor-derived cell lines were examined. Treatment of medulloblastoma (Daoy, D283) and glioma (U251, C6, RG2) cell lines resulted in a dose-dependent decline in DNA synthesis and cell proliferation, with ID₅₀ values ranging from 6.3 to 14.6 mM. PA increased TGFβ2 production by medulloblastoma Daoy cells; however, neutralizing antibodies against either TFGβ2 or TGFβ1 failed to block the growth arrest observed, suggesting that, unlike other differentiation agents, such as retinoic acid, the antiproliferative effect of PA is not mediated by a TGFβ pathway. In addition to cytostasis, PA induced marked morphological changes in U251 and C6 glioma cells associated with increased abundance of GFAP-positive processes. Although the morphology of PA-treated medulloblastoma cells was not significantly altered, the D283 cells exhibited increased expression of neurofilament proteins and Hu antigen, indicative of differentiation along a neuronal pathway. The effects of PA on the medulloblastoma cell lines were compared to the effects of PA on the well established human neuroblastoma differentiation model BE(2)C, which is capable of a bidirectional differentiation towards a neuronal or a glial/schwann cell pathway. In BE(2)C cells PA induced differentiation towards a schwann/glial cell like phenotype, suggesting that the choice of differentiation pathway is cell type and agent specific.

EXAMPLE 11

: NaPA efficacy on Astrocytoma Cells

0186<b>Cell culturing techniques</b>. Human glioma (U251), rat glioma (C6, RG2), human medulloblastoma (Daoy, D283), human neuroblastoma (BE(2)C) (all from ATCC) and the murine lung fibroblast cell line MuLv1 (provided by Dr. S. Cheifietz) were routinely maintained in Eagles minimal essential media (MEM) (GIBCO) supplemented with 10% fetal calf serum (FCS), nonessential amino acids (NEAA), L-glutamine (2mM), penicillin (100U/ml) and streptomycin (100ug/ml) (all medium constituents were purchased from Gibco, Grand Island, NY, USA). Adherent cell lines were plated in T-150 tissue culture flasks (Becton-Dickenson) and passaged using trypsinization when 70% confluent. The cell line growing in suspension (D283) was maintained at a cell density of 10⁵-10⁶ cells per ml. Cells were grown at 37°C in a humidified 5% CO₂ incubator. For glutamine depletion studies U251 cells were adapted to serum- and glutamine-free Ultraculture medium (Hyclone). For proliferation studies with exogenous TGFβ1 and TGFβ2 and neutralizing antibodies against TGFβ Daoy cells were grown in MEM containing 0.2% FCS and U251 cells were cultured in serum-free Ultraculture medium (Hyclone).

0187<b>PA- and ATRA-treatment of cell lines</b>. Phenylacetic acid (Sigma) was dissolved in MEM to make a 100 mM stock solution and the pH was adjusted to 7.2 with NaOH. Then the MEM was supplemented with 10% heat-inactivated FCS. All-<i>trans</i>-retinoic acid (ATRA) was dissolved in ethanol to prepare a 10^-3 M stock solution and added to the media to yield final concentrations ranging from 10^-7 to 10^-6 M.

0188<b>Cell proliferation assay</b>. For proliferation studies tumor cells in log phase growth were harvested and resuspended at a concentration of 20,000 cells/ml; 100 ul/well of the cell suspension was placed into 96-well microtiter plates (Costar). After 24 h the cells were incubated with an equal volume of the serial dilutions of PA to yield final concentrations ranging from 5 to 20 mM PA. MEM containing 10% FCS served as a control. Cell proliferation was determined at 24 h intervals by ³H-thymidine incorporation. One µCi of ³H-thymidine (Amersham) was added to each well and the microtiter plates were incubated for 4 h at 37°C. Then the cells were harvested onto glass fiber filters using a semi-automated cell harvester (Cambridge Biotechnologies) and ³H-thymidine activity was quantitated using a liquid scintillation counter (Hewlett Packard). All experiments were set up in quadruplicates.

0189<b>Effects of exogenous TGFβ</b>. To determine the effects of exogenous TGFβ on Daoy cells recombinant human TGFβ1 and TGFβ2 (R&amp;D Systems) at concentrations ranging from 0.5 pM to 1 nM were added to similarly prepared microtiter plates for 24 h prior to determining ³H-thymidine uptake.

0190<b>Neutralizing studies with anti-human TGFβ1 and TGFβ2 antibodies</b>. polyclonal antibodies against human TGFβ1 and TGFβ2 (R&amp;D Systems) were in concentrations of 10 to 40 µg/ml with Daoy cells grown in 0.2% FCS or U251 cells grown in serum-free medium (Ultraculture, Hyclone) exposed to PA 10 mM. Proliferation was determined by ³H-thymidine incorporation as described above.

0191<b>Washout studies</b>. Cells were seeded similar to proliferation studies as described before except for a number of 250 cells per well. Two days after treatment with PA at various concentrations the agent containing medium was replaced by plain culture medium and ³H-thymidine uptake was measured after 4, 8, 24, 48 and 72 h.

0192<b>Immunocytochemistry.</b> Adherent cell lines were grown on Lab-Tek 8-chamber slides (Nunc) under the same conditions previously described for cell cultures. After 24 h the cells were treated with PA 20, 10 or 5 mM for 4 to 7 days. After fixation in cold acetone immunoreactivity was determined using the avidin-biotin-peroxidase complex method of Hsu and colleagues (Hus SM, Raine L and Fanger H: Use of avidin-biotin-peroxidase techniques:a comparison between ABC and unlabeled antibody (PAP) procedures. J. Histochem Cytochem 29:577-580, 1981). For nonadherent cell lines, cytocentrifuged preparations were made using a Cytospin II (Shandon) and the cells fixed essentially as described above.

0193Mouse mAbs specific against GFAP (clone G-A-5), NF triplet proteins (68kD (clone NR4), 160kD (clone BF10) and 200kD (clone RT97)), synaptophysin (clone SY38) or vimentin (clone V9) were purchased from Boebringer-Mannheim. Anti-TGFalpha (clone 213-4.4) and EGF-receptor (clone) antibodies were obtained from Oncogene Science. Anti-HLA class I (clone) and II (clone L243) mAbs were purchased from Becton-Dickenson. Irrelevant mouse antibodies (MOPC-21, Sigma) served as a negative control.

0194Anti-Hu IgG (provided by Dr. J. B. Posner) was prepared from a high titer anti-Hu serum and conjugated to biotin as reported previously (Szabo A, Dalmau J, Manley G, Rosenfeld M, Wong E, Henson J, Posner JB, Furneaux H: HuD, a paraneoplastic encephalomyelitis antigen, contains RNA-binding domains and is homologous to Elav and Sex-lethal. Cell 67:325-333,1991). Frozen sections (7 µm thick) of human brain served as a positive control. Incubation with biotinylated IgG from a normal individual was taken as negative control.

0195<b>Western blotting.</b> Tumor cells were solubilized in 50 mM Tris-HCl, pH 7.2, containing 0.5% NP-40 and proteinase inhibitors (phenylmethylsulfonylfluoride, pepstatin, leupeptin, soybean trypsin inhibitor, aprotinin and benzamidine). Equal aliquots (15-30 µg) of the protein extracts were electrophoresed in 8 or 10% SDS-PAGE gels under denaturing conditions. The proteins were then electroblotted (Hoeffler Transblot system) from the gel onto 0.2 µm poresized nitrocellulose. Blots were blocked in 5% milk for 2 h, incubated with the primary antibody (mAb in mouse or human serum) for 1 h and detected using HRP-conjugated sheep anti-IgG (Amersham) directed against the appropriate species of primary antibody and the chemiluminescent technique (Amersham).

0196For Western analysis of Hu a high titer serum of a patient with anti-Hu syndrome was used and serum from a healthy individual served as a negative control.

0197<b>Cell cycle analysis</b>. For cell cycle studies, Daoy cells were plated in T-150 culture flasks in serum-containing medium. After 24 h of incubation, the culture medium was replaced by serum-free medium (Ultraculture, Hyclone) for 24 h to synchronize the cell cultures; then the cultures were refed medium containing PA 10 mM or plain serum containing medium. Cells were harvested after 48, stained with acridine orange and analyzed on a FAC-Scan (Becton-Diekenson).

0198<b>RT-PCR assay of HuD-expression</b>. Total RNA (1 µg) from tumor cell lines was reverse transcripted with random hexamers (2.5 µM) for 50 min at 37°C in a reaction volume of 20 µl containing the following: 1 mM each dNTP, 1 U/µl RNase inhibitor, and 2.5 U/µl MMLV-RT (Gibco). RT reactions were terminated by incubation at 99°C for 5 min. One-twentieth of the RT reaction product was used for PCR amplification. PCR was carried out in a 1xPCR buffer (50 mM Tris pH 9.5, 1.5 mM MgCl₂, 20 mM anmonium sulfate), 0.2 mM each dNTP, 5 µCi of (³²P)dCTP, 0.5 µM each upstream and downstream primer (CCAGGCCCTGCTCTCCC, AGGCTTGTCATTCCATC) for HuD and for ß2-microglobulin, and 1 U of Taq polymerase (Perkin-Elmer Cetus). PCR analysis was performed in a Perkin-Elmer Cetus DNA cycler with the following temperature profile: 1 min at 90°C; 35 cycles of 30 s at 55°C, 1 min at 72°C, and 1 min at 92°C; 2 min at 55°C; and 10 min at 72°C. One-tenth of the PCR product was electrophoresed in 6% acrylamide gel, and the PCR product was analyzed by autoradiography.

0199<b>TGFβ bioassay</b>. Conditioned media was produced by incubating Daoy cells in the presence of PA 10 mM in T-150 culture flasks. The culture media was aspirated and concentrated 20 fold to a final volume of 200 µl using Amicon centrifugal concentrators. The concentrated media was transferred to silicon treated polypropylene microfuge tubes (Danville Scientific) and protease inhibitors (same as mentioned before) added. To activate latent TGFβ, the samples were acidified using acetic acid and subsequently neutralized with 5N NaOH prior to the assay.

0200The MuLv1 cells were harvested by scraping flasks, washed in serum free MEM, resuspended in MEM+0.2% FCS and seeded into 96 well microtiter plates at a cell density of 2000 cells per well in 50 µl aliquots. After, the plates were incubated for 4 h, 150 µl of conditioned media from cell lines to be tested for TGFβ production was added per well. The plates were incubated for 24 h and then cell proliferation was measured by ³H-thymidine incorporation as described previously. A standard curve relating TGFβ concentration to rate of ³H-thymidine incorporation was generated using human recombinant TGFβ1 (R&amp;D systems), ranging from 0.1 pM to 10 nM.

0201<b>Elisa for TGFβ2.</b> Conditioned media was concentrated 20 fold using Amicon concentrators to a final volume of 200 µl. All the concentration steps were performed at 4°C. Protease inhibitors (same as listed for Western analysis) were added to the concentrated samples prior to storage at -70°C. Latent TGFβ was activated by adding glacial acetic acid to the samples to yield a final concentration of 1 M acetic acid. Then the samples were evaporated to dryness using a Speed-Vac and redissolved in 200 µl of distilled water. The reconstitution/drying step was repeated for a total of 3 washes. Then the samples were redissolved in the sample treatment buffer RD5B provided in the kit and the capture ELISA protocol performed following the manufacturer's instructions. All data points were performed in duplicate. The colorimetric reaction was quantitated by measuring absorbance at 450 nm using a Bio-RAD Microplate reader and the Biorad Elisamatic software. A standard curve was generated using human recombinant TGFµ2 as the protein standard. <b>Effects of PA on cell growth and cell cycle</b>. All 6 cell lines showed a dose-dependent growth inhibition after incubation with PA (Figure 21) with a maximum effect after 48 to 96 h. The human malignant glioma cell line U251, which was previously reported to be ATRA resistant (Yung WKA, Lotan R, Lee P, Lotan D, Steck PA: Modulation of growth and epidermal growth factor receptor activity by retinoic acid in human glioma cells. Cancer Res 49:1014-1019, 1989), also responded to PA. The human tumor cell lines as well as the rat glioma cell line C6 showed ID₅₀ values for PA between 5.8 and 9.5 mM, whereas the rat glioma cell line RG2 appeared to be less sensitive with an ID₅₀ of 14.6 mM (Table 12). Trypan blue exclusion demonstrated greater than 90% viability of PA treated cell cultures. When PA was removed after 48 h a clear washout effect was noted in 3 cell lines studied (Daoy, U251 and C6). <tables id="tabl0015" num="0015"><table frame="all"><title>Table 12:</title><tgroup cols="2" colsep="1" rowsep="0"><colspec colnum="1" colname="col1" colwidth="78.75mm" /><colspec colnum="2" colname="col2" colwidth="78.75mm" /><thead valign="top"><row rowsep="1"><entry namest="col1" nameend="col2" align="left">ID₅₀ Determinations for PA induced growth inhibition of various tumor cell lines</entry></row><row rowsep="1"><entry namest="col1" nameend="col1" align="left">Cell Line</entry><entry namest="col2" nameend="col2" align="left">ID₅₀ [mM]</entry></row></thead><tbody valign="top"><row><entry namest="col1" nameend="col1" align="left">D-283 MED</entry><entry namest="col2" nameend="col2" align="left">9</entry></row><row><entry namest="col1" nameend="col1" align="left">Daoy MED</entry><entry namest="col2" nameend="col2" align="left">6.3</entry></row><row><entry namest="col1" nameend="col1" align="left">U-251 MG</entry><entry namest="col2" nameend="col2" align="left">8.2</entry></row><row><entry namest="col1" nameend="col1" align="left">RG-2 rat glioma</entry><entry namest="col2" nameend="col2" align="left">14.6</entry></row><row><entry namest="col1" nameend="col1" align="left">C6 rat glioma</entry><entry namest="col2" nameend="col2" align="left">8.5</entry></row><row rowsep="1"><entry namest="col1" nameend="col1" align="left">BE(2)C</entry><entry namest="col2" nameend="col2" align="left">9.5</entry></row></tbody></tgroup></table></tables>

0202Cell cycle analysis of Daoy cells treated with 10 mM PA for 2 days showed an accumulation of cells in G0/G1 with an equivalent reduction in the percentage of cells in the S- and G2/M-phase. Prior to treatment 34.2% of Daoy cells were in G0/G1, 55.5% in S, and 10.3% in G2/M phase. After treatment with PA 51.9% were in G1, 39.9% in S, and 8.2% in G2/M phase. <b>Effects of PA on morphology and phenotype of glioma cell lines.</b> PA induced marked morphological changes in U251 cells. Cells were grown in MEM+10% FCS with 10 mM (b), 20 mM (c) PA or media alone (1) for 96 h and then the media was removed and the cells fixed for 10 min in cold acetone. The cells were then incubated with a murine mAb directed against vimentin or an irrelevant isotype matched control murine mAb and immunoreactivity detected using the avidin-biotin peroxidase method. Prior to treatment, the cells were characterized by spindly bipolar GFAP positive processes. After PA treatment for 4 days, cytoplasmic processes were more extensive and complex. The cytoplasmic/nuclear ratio was increased greatly with enlargement of the cell body and elaboration of a radiating stellate array of cytoplasmic processes resembling those of hyperplastic astrocytes. The extent of these morphological changes were dose-related. Similar effects were seen in C6 rat glioma cells. Cells were grown in MEM+10% FCS with 10 mM PA or media alone for 96 h and then the media was removed and the Cells fixed for 10 min in cold acetone. The cells were then incubated with a murine mAb directed against GFAP or an irrelevant isotype matched control murine mAb and immunoreactivity detected using the avidin-biotin peroxidase method. Prior to treatment (a) only rare cells exhibited GFAP reactivity in a narrow rime of perinuclear cytoplasm, whereas following PA treatment (96 h, 10 mM) cells bearing conspicuous GFAP reactive processes appeared. Most untreated cells were GFAP negative, and in the few positive cells the immunoreactivity was localized in the perinuclear region. Although Western analysis for GFAP expression in both cell lines failed to show a clearcut quantitative change after exposure to PA, the fraction of cells staining for GFAP increased and filamentous immunoreactivity appeared in the cellular processes. Untreated U251 cells also expressed vimentin, EGFr, TGFalpha and ELA class I antigens. None of these cellular markers was modified by PA treatment. After discontinuation of PA treatment after 4 days all morphological changes of U251 cells reverted to the pretreatment state within 3 to 5 days. <b>Effects of PA on the differentiation state of medulloblastoma cell lines</b>. In short term cultures of the medulloblastoma cell lines Daoy and D283 growth inhibition by PA was not accompanied by gross morphological changes. Daoy cells expressed both class I and class II HLA immunoreactivity; these phenotypic markers remained unchanged after PA (10mM) treatment. Neither of the 2 cell lines expressed synaptophysin and GFAP before or after treatment with PA. Untreated Daoy cells were reactive for EGFr and TGFα; immunohistochemical staining for EGFr and TGFα was not affected by PA treatment.

0203Expression of Hu is one of the earliest markers of neuronal phenotype in the peripheral nervous system of the chick (<i>See</i> Marusitch) and one of the earliest markers of neuronal phenotype in the developing central nervous system of the mouse. Previous studies of the expression of Hu in human normal tissue and tumor tissue demonstrated that the Hu antigen is highly restricted to the nervous system, small cell lung cancer tumors and neuroblastomas (Dalmau J, Fumeaux HM, Cordon-Cardo C, Posner JB: The expression of the Hu (paraneoplastic encephalomyelitis/sensory neuronopathy) antigen in human normal and tumor tissues. Am J Pathol 141:881-886, 1992). Immunocytochemistry using biotinylated anti-Hu antisera showed Hu antigen expression in D283 and BE(2)C cells, whereas Daoy cells and all glioma cell lines were negative. Results of immunostaining were confirmed by Western analysis and RT-PCR.

0204For Western analysis, cells were solubilized in 50 mM Tris buffer containing 0.5% NP-40 and oiled for 7 min in the presence of 2-macaptoethanol. Proteins were separated on 10% SDS-PAGE gels with 20 ug of protein loaded per lane. Proteins were transferred from the gel to nitrocellulose by electroblotting. Immunoreactivity was determined by exposing the blots to a human serum with high titer anti-Hu antibodies or serum from a normal donor and then incubated with HRP-conjugated sheep-anti human IgG. The blots were then autoradiographed using the enhanced chemiluminescent system (Amersham). Hu-fusion protein and protein extracts of cortical neurons served as positive and normal human serum as a negative control. For RT-PCR analysis 1 µg of total RNA from tumor cell lines was reverse transcripted with random hexamers and one-twentieth of the RT reaction product was used for PCR amplification with HuD and β2-microglobulin specific primers. The PCR product was electrophoresed in a 6% acrylamide gel and analyzed by autoradiography.

0205The Hu antigen was detectable as a band with a molecular weight of 35 to 40 kDa on blots of denaturing SDS-PAGE gels. None of the cell lines reacted with normal human serum.

0206Daoy cells were negative for NFs whereas D283 cells expressed all 3 NF proteins, determined immunocytochemically. By immunocytochemistry quantitative changes after treatment with PA were seen for NF-M and Hu expression. After exposure to PA (10 mM) for 7 days NF-M and Hu immunoreactivity were enhanced. Western analysis of untreated and PA treated D283 cell homogenates confirmed these quantitative changes in NF-M and Hu protein expression. Western analysis was performed for Hu and NF-M expression of untreated and PA (10 mM, 7 d) treated D283 cells lysed in 50 mM Tris containing 0.5% NP-40 and separated under denaturing conditions by electrophoresis through 10% SDS-PAGE gels and transferred to nitrocellulose paper by electroblotting Specific immunoreactivity was determined using human serum containing high titer anti-Hu antibodies and murine anti-NF-M respectively and the enhanced chemiluminescent technique (Amersham). Normal human serum or the appropriate isotype matched irrelevant mAb served as coutrol. Immunostaining for NF-L revealed similar but less obvious changes after PA treatment and NF-H remained unchanged. <b>Effects of PA on the human neuroblastoma differentiation model BE(2)C</b>. The effects of PA on medulloblastoma cell lines were compared to the human neuroblastoma cell line BE(2)C, which represents a well established bipotential differentiation model for neuronal and glial/schwann cell differentiation, indicated by changes in phenotypic markers, such as NF proteins, Hu and Vimentin, with ATRA inducing a neuronal and BUdR a glial/schwann cell phenotype (Biedler JL, Casals D, Chang T, Meyers MB, Spengler BA, Ross RA: Multidrug resistant human neuroblastoma cells are more differentiated than controls and retinoic acid further induces lineage-specific differentiation. Advances in Neuroblastoma Research 3:181-191,1991, Wiley-Liss, Inc.; Ross RA, Bossart E, Spengler BA, Biedler JL: Multipotent capacity of morphologically intermediate (I-type) human neuroblastoma cells after treatment with differentiation-inducing drugs. Advances in Neuroblastoma Research 3:193-201, 1991, Wiley-Liss, Inc.; Ciccarone V, Spengler BA, Meyers MB, Biedler JL, Ross RA: Phenotypic diversification in human neuroblastoma cells: Expression of neural crest lineages. Cancer Res 49:219-225, 1989; Ross Ra, Spengler BA, Rettig WR, Biedler JL: Permanent phenotypic conversion of human neuroblastoma I-type cells. Proc Am Assoc Cancer Res 35:44, 1993). BE(2)C neuroblastoma cells showed a decrease in Hu and NF-M protein expression and an increase in vimentin expression following PA treatment (10 mM) for 7 days by both immunocytochemistry and Western analysis. Cells were lysed using 50 mM Tris containing 0.5% NP-40 and then the proteins were separated under denaturing conditions by electrophoresis through 8-10% SDS-PAGE gels and transferred to nitrocellulose paper by electroblotting. Specific immunoreactivity was determined using murine anti-vimentin mAb, human serum containing high titer anti-Hu antibodies, and murine anti-NF-M respectively and the enhanced chemiluminescent technique (Amersham). Normal human serum or the appropriate isotype matched irrelevant mAb served as control. <b>Role of TGFβ in PA-mediated growth inhibition</b>. To test the hypothesis that TGFβ is involved in mediating the growth inhibitory effects of PA conditioned media of Daoy cells was studied before and after treatment with PA. Incubation of Daoy cells with PA 10 mM led to increased amounts of TGFβ in the conditioned media determined by the mink lung cell (MuLv1) bioassay. After 4 days of incubation, the control media contained 0.5 pM and the PA treated conditioned media contained 3.0 pM TGFβ. Further characterization of the secreted bioactive TGFβ protein using an ELISA assay specific for TGFβ2 indicated that the secretion of TGFβ2 was stimulated by PA.

0207Addition of exogenous human recombinant TGFβ1 or TGFβ2 at concentrations ranging form 0.5 pM to 1 nM did not inhibit growth of untreated Daoy cells maintained in MEM containing 0.2% FCS. These TGFβ proteins inhibited the growth of MuLv1 cells profoundly after a 24 h exposure with an ID₅₀ of 2 pM. Blocking studies with neutralizing antibodies against TGFβ1 and TGFβ2, at concentrations up to 20 µg/ml, had no effects on PA induced inhibition on Daoy and U251 cell growth (Figure 22). However, these concentrations of antibodies were capable of neutralizing the growth inhibitory effects of exogenous TGFβ1 and TGFβ2 on MuLvI cells.

SECTION O:

NAPA AND NAPB HUMAN STUDIES

0208The growth inhibition and differentiating effects of sodium phenylacetate against hematopoietic and-solid tumor cell lines has aroused clinical interest in its use as an anticancer drug. The non-linear pharmacokinetics, metabolism, toxicity, and clinical activity of PA when administered by continuous i.v. infusion (CIVI) for 2 weeks were first determined in a first phase I clinical trial. In this, the drug was administered by CIVI in an attempt to maintain drug concentrations in the range associated with preclinical activity. Under these conditions, phenylacetate displayed saturable kinetics and evidence for induction of its own metabolism (pharmacokinetic parameters, mean ± SD: Km = 105.1 ± 44.5 µg/ml, V_max = 24.1 ± 5.2 mg/kg/hr, Vd =19.2 ± 3.3 L, and IR = 0.0028 ± 0.003 h^-1). Clinical improvement was noted in several patients with metastatic hormone-independent prostate cancer and malignant glioma who achieved serum phenylacetate concentrations of 1-2 mM. Infusion rates close to the V_max of the metabolizing enzyme were required, however, in order to achieve concentrations of 3 mM or more. This often resulted in rapid drug accumulation, associated with neurological toxicity once phenylacetate levels exceeded 6 mM. These limitations led to the investigation of a different dosing schedule wherein the drug was given as a one-hour infusion twice daily, based on the assumption that elevations in phenylacetate concentrations might be well tolerated if transient, and that intermittent dosing might help control drug accumulation.

0209The CIVI protocol underwent several modifications over the 6 month period. First, the size of the initial bolus dose was reduced from 150 to 60 mg/kg i.v. and the bolus infusion duration from 2 hours to 30 minutes, after the first three patients were treated. This change resulted in drug concentrations optimal for estimating the drug's pharmacokinetics (vide infra) within a six hour time period. Second, after the non-linear nature of phenylacetate's pharmacokinetics was recognized (vide infra), the protocol was changed from a fixed dose escalation (dose levels 1 and 2:150 and 250 mg/kg/day, respectively) to a concentration-guided escalation trial (dose levels 3 and 4:200 and 400 µg/ml, respectively). In the latter format each patient was given an i.v. bolus dose of phenylacetate (60 mg/kg over 30 minutes) one week prior to beginning a 14 day CM of the drug. The patient-specific pharmacokinetic parameters estimated from the bolus dose were used to calculate an infusion rate that would maintain the serum phenylacetate concentration at the targeted level during the 14 day infusion. Serum drug concentrations were measured weekly, prompting weekining reestimation of individual pharmacokinetics and dosage adjustment (adaptive control with feedback). <b>Mechanisms of Phenylacetate Clearance.</b> As shown in Figure 1, phenylacetate underwent rapid conversion to phenylacetylglutamine. In the three patients who received 150 mg/kg of phenylacetate over 2 hours, the peak serum concentration of phenylacetylglutamine (mean ± SD) was 224 ± 81 µg/ml, 325 ± 72 minutes post-infusion. After 60 mg/kg boluses, the peak serum phenylacetylglutamine concentration was 104 ± 33 µg/ml at 86 ± 33 min. The plasma glutamine concentration prior to bolus treatment with phenylacetate was 105 ± 29 µg/ml (mean ± SD,n = 16), similar to reported values in the literature for normal volunteers. The largest reduction in circulating plasma glutamine levels (46%) was observed in a patient receiving a 150 mg/kg bolus.

0210The molar excretion of phenylacetylglutamine was determined from 24 hour urine collections. It accounted for 99 ± 23% (n = 18) of the dose of phenylacetate administered over the same period of time. The recovery of the free, non-metabolized drug was only 1.5 ± 2.4% of the total administered dose. A strong phenylacetate odor was detectable on patients' clothes and on examiners' hands after physical examination. This suggests that phenylacetate may also be excreted to some extent transdermally. <b>Distribution of Phenylacetate and Phenylacetylglutamine into the CSF.</b> Clinical circumstances required evaluation of the cerebrospinal fluid in two patients who had metastatic prostate cancer and were free of CNS metastases. The first had reached steady-state phenylacetate and phenylacetylglutamine concentrations of 141 and 199 µg/ml, respectively, the corresponding simultaneous CSF concentrations were 74 and 5 µg/ml, respectively. At the time of simultaneous serum and CSF sampling, the second patient had been off therapy for 6 hours after having reached a serum concentration of phenylacetate of 1044 µg/ml. Measurements in serum and CSF were 781 versus 863 µg/ml for phenylacetate and 374 versus 46 µg/ml for phenylacetylglutamine, respectively. <b>Clinical Toxicities</b>. No toxicity was associated with bolus administration of the drug. The highest peak serum concentrations were measured after the 150 mg/kg bolus over 2 hours (533 ± 94 µg/ml, mean ± SD). Table 16 lists the average serum phenylacetate concentrations per dose level. Although those achieved at dose levels 3 and 4 are close to their target, the large standard deviations reflect our inability to maintain serum phenylacetate concentrations within the desired range, even when using adaptive control with feedback.

0211Drug-related toxicity was clearly related to the serum phenylacetate concentration. Three episodes of CNS toxicity, limited to confusion and lethargy and often precided by emesis, occurred in patients treated at dose levels 3 and 4. They were associated with drug concentrations of 906, 1044 and 1285 µg/ml (mean: 950 ± 300 µg/ml), respectively Symptoms were completely resolved within 18 hours of terminating the drug infusion in all instances. <b>Antitumor Activity</b>. Stabilization ofPSA for more than 2 months was noted in 3 of the 9 patients with prostate cancer treated at dose levels 2, 3 and 4 (mean phenylacetate concentration: 234 ± 175 µg/ml). A fourth patient experienced marked improvement in bone pain and was able to substitute a non-steroidal anti-inflammatory drug to his morphine regimen. One patient with glioblastoma multiform has had improvement in performance status (30% on Karnofsky's scale), intellectual function and expressive aphasia of greater than 5 months duration. Although no change in the size of the tumor mass was noted, reduction in peritumoral edema was documented by MRI.

0212In a second phase I clinical trial, PA was administered i.v. twice daily (BID) in an attempt to minimize drug accumulation while maximizing peak serum drug concentrations. Twenty-seven cycles of therapy were given to 18 patients at two dose levels (125 and 150 mg/kg BID for 14 days). Detailed pharmacokinetic studies in 8 patients conclusively showed that PA induces its own clearance by a factor of 44% over two weeks. Dose-limiting toxicity consisted of reversible central nervous system depression associated with nausea and hypoacusis. Clinical improvement was observed in eight patients. Three of seven patients with refractory malignant glioma had improved performance status for up to 9 months. One had a partial response and another a minor response on MRI. Improvement was also seen in five of nine patients with hormone-independent prostate cancer (HIPC). One had a greater than 50% decline in PSA, one had resolution of disseminated intravascular coagulation and one noted decreased bone pain that lasted for more than 1 month. Two patients maintained an improved performance status for more than 8 months, one of whom demonstrated healing of blastic bone metastases. These results suggest that PA has activity in malignant gliomas and HIPC. The recommended schedule for phase II testing is 125 mg/kg BID (one hour infusion) given in monthly cycles of 14 days duration.

EXAMPLE 12

:

In vivo

trials with NaPA B.I.D.

0213<b>Patient Population</b>. Adults with advanced solid tumors refractory to conventional therapy, a performance status greater than 60% on Kamofsky's scale, normal hepatic transaminases and bilirubin, a serum creatinine less than 1.5 mg/dl, and normal leucocyte and platelet counts were eligible for this study. The clinical protocol was reviewed and approved by the NCI Institutional Review Board and all patients gave written informed consent prior to participating in the study. Eighteen patients, 15 men and 3 women, with a mean age of 54 years (range, 32 to 76) were enrolled between July and October 1993. Disease distribution included metastatic, hormone-independent prostate cancer (9 patients), primary CNS tumors (7 patients), renal cell cancer (1 patient) and sarcoma (1 patient). Four patients, two with gliomas and two with prostate cancer, had received prior treatment with phenylacetate given by CIVI. <b>Drug Preparation and Administration</b>. Sodium phenylacetate for injection (Elan Pharmaceutical Research Co., Gainesville, GA) was prepared from sterile sodium phenylacetate powder by the Pharmacy Department of the Clinical Center, NIH, in vials containing a drug concentration of 500 mg/ml in sterile water for injection, USP. Sodium hydroxide or hydrochloric acid was added to adjust the final pH to 7.4. Doses of sodium phenylacetate to be infused over 1 hour were prepared in 250 ml of sterile water for injection, USP, and were administered using an infusion pump. The experiment used the one compartment, non-linear pbarmacokinetic model and population parameters derived from previous experience with phenylacetate to stimulate the course of several intermittent dosing regimens. The primary objective was to design one that would expose most patients to transient phenylacetate concentrations in excess of 3 mM and maintain trough concentrations of approximately 2 mM. These appeared necessary for antitumor activity <i>in vitro</i> and had been well tolerated by patients for as long as 2 weeks. The secondary objective was to pharmacokinetically determine the optimal dose of phenylacetate to achieve the above and minimize the number of escalation steps in the trial by beginning at that dose.

0214Phenylacetate was delivered at two dose levels: ten patients were treated at 125 and eight at 150 mg/kg/dose, BID, for 14 consecutive days. Cycles of therapy were repeated every 4 weeks. The dose was increased in sequential cohorts of at least three patients. Individual patients could escalate from one dose level to the next with sequential cycles provided they had experienced no drug-related toxicity and their disease was stable or improved. <b>Sampling Schedule</b>. Serum drug concentrations were measured twice a day in all patients, immediately prior to and 15 minutes following the administration of the 05:00 PM infusion. To assess the possibility that phenylacetate induces its own clearance, 8 patients underwent more intensive drug level monitoring on days 1, 2 or 3 and days 12, 13 or 14 of the two weeks of therapy. In these patients, blood was also obtained at 0, 65,90, 105, 120, 150, 180, 210, 240, 300 and 360 minutes from the beginning of the 08:00 AM infusion. This allowed for a comparison to be made between AUCs generated from identical doses of phenylacetate at the beginning and at the end of therapy, any difference reflecting a change in drug clearance over this period of time. <b>Analytical Method</b>. Blood was drawn into plain glass Vacutainer® tubes and refrigerated. Serum was separated and frozen at -85 C within 12 hours of collection. The HPLC method for measuring serum concentrations of phenylacetate and phenylacetylglutamine is described elsewhere herein. Briefly, 100 µl of 10% perchloric acid were added to 200 µl of serum to precipitate the proteins. After centrifugation, the supernatant was neutralized with 25 µl of a 20% solution of potassium bicarbonate. Following a second centrifugation, 20 µl of supernatant were injected onto a 300 X 3.4 mm C-18 column heated at 60 C. Elution was performed with an increasing gradient of acetonitrile in water from 5% to 30% over 20 minutes. Its progress was followed by monitoring UV absorbance at 208 nm. Characteristic elution times for phenylacetate and phenylacetylglutamine under these conditions were 17.1 and 9.8 minutes, respectively. <b>Determination of Responses to Treatment</b>. Patients were seen at least monthly by a physician at the NCI. The response status of malignancies other than prostate cancer and primary CNS tumors was determined prior to each cycle of therapy, using conventional anatomic criteria. For prostate cancer patients, criteria from the NPCP trials and published criteria of PSA decline were used. A technetium bone scan was obtained every three months if initially positive or in the presence of new bone symptoms. The assessment of patients with gliomas is complicated by the frequent microscopic multicentricity of the tumor, the variability in tumor-associated edema and its response to steroid therapy, and technical factors which precluded using the intensity of gadolinium enhancement on MRI to determine tumor response. For these reasons, special attention was paid to changes in performance status and steroid requirements, which were assessed at each visit. Complete response was defined as complete disappearance of lesions on MRI (assessment done in two different planes), and weaning from steroids. Partial response was defined by conventional anatomic criteria, absence of deterioration in performance status and stable or decreased corticosteroid requirements. Minor response was defined similarly, using 25% as the minimal limit of size reduction. Progressive disease was defined either by anatomic criteria, deterioration in performance status by at least 20 points on Karnofsky's scale or the need for increasing steroid doses in order to maintain function. Disease stabilization was defined as the absence of a significant (more than 25%) increase or decrease in tumor size while the patient maintained or improved his performance status at his pre-treatment level. To be scored as significant, disease stabilization in these patients had to be maintained for at least three months. <b>Statistical Methods</b>. To determine whether phenylacetate induces its own clearance, the AUCs following a single dose of the drug at the beginning and end of PA therapy in 8 patients were compared using the Wilcoxon signed rank test for paired data. <b>Pharmacokinetic Simulation and Clinical Findings</b>. Several intermittent dosing schedules were modeled using the pharmacokinetic parameters derived from a previous trial of phenylacetate. The pharacokinetic course of a 70 kg man given phenylacetate at 125 mg/kg/dose BID (08:00 AM and 05:00 PM) was modeled. The simulation predicted peak levels between 1.5 and 3.5 mM with trough concentrations below 1 mM and no drug accumulation (95% confidence intervals).

0215Analysis of drug levels in 18 patients shows peak serum concentrations (mean ± SD) of 3.0 ± 1.2 mM (n=10) and 3.7 ± 0.8 mM (n= 8) at the two dose levels. Corresponding trough concentrations were 0.2 ± 0.2 mM and 0.7 ±0.5 mM, respectively. On average, patients spent 40% of their treatment time above a concentration of 2 mM. Drug accumulation associated with neurologic toxicity (highest phenylacetate concentration: 7.3 mM) occurred in a single patient treated at the second dose level. Population pharmacokinetic parameters were determined by fitting a one compartment non-linear model to each patient's dosing and drug concentration data, using as initial parameter estimates of the mean parameter values described elsewhere above. The pharmacokinetic parameters of each individual patient were then averaged and expressed as mean parameter values with associated standard deviation:<maths id="math0001"><math display="block"><mrow><mtext>Km = 112 ± 34 µg/ml,</mtext></mrow></math><img file="EP1523982A2_D0005.tif" /></maths><maths id="math0002"><math display="block"><mrow><msub><mrow><mtext>V</mtext></mrow><mrow><mtext>max</mtext></mrow></msub><mtext> = 25.8 ± 5.0 mg/kg/hr,</mtext></mrow></math><img file="EP1523982A2_D0006.tif" /></maths> and<maths id="math0003"><math display="block"><mrow><mtext>Vd = 21.4 ± 4.6 L.</mtext></mrow></math><img file="EP1523982A2_D0007.tif" /></maths><b>Phenylacetate Clearance</b>. The molar excretion of phenylacetylglutamine was determined from 24 hour urine collections. It accounted for 76 ± 15% (mean ± SD, n = 24) of the dose ofphenylacetate given over the same period of time. The recovery of free, non-metabolized drug was 3 ± 1% of the total administered dose. <b>Induction of Phenylacetate Clearance</b>. The hypothesis that phenylacetate induces its own clearance was tested by comparing AUCs following the AM infusion of phenylacetate at the beginning and at the end of therapy in 8 patients. All exhibited a decrease in AUC, with a mean value of 44 ± 27% (p value = 0.008) between the two ends of each cycle of therapy. <b>Clinical Assessment or Antitumor Activity</b>. Three of seven patients with brain tumors displayed evidence of antitumor activity or disease stabilization. One had a partial response accompanied by subjective improvement in short-term memory. This response was confirmed by radiographic evidence of healing osteoblastic metastases (6 months follow up) despite rising serum PSA concentrations over the same period of time in a 57 year old man with metastatic, hormone-independent prostate cancer. She was also able to reduce her daily corticosteroid dose by 50%, from 8 to 4 mg of dexamethasone. Two patients, who initially presented with confusion, had received phenylacetate by CIVI prior to being treated on the intermittent schedule. One had a minor response documented radiologically after the change in regimen, while tumor size remained stable in the second. Both maintained a 20 and 30% improvement in performance status for six and seven months, respectively. Their dose of corticosterioids was held constant throughout their treatment.

0216Five of nine patients with hormone-independent prostate cancer showed clinical improvement. One experienced a greater than 50% decline in PSA sustained for a month and has maintained a performance status of 100% on Karnofsky's scale for more than five months. One with tumor-associated disseminated intravascular coagulation (prolonged prothrombin time, low fibrinogen, normal platelet count) stopped taking flutamide concurrently with starting phenylacetate. His hematological parameters normalized during the first week of therapy while his performance status improved by 30%, due to reduction of bone pain. Two who had already been treated with phenylacetate given by CM with an associated improvement in bone pain and performance status, have maintained if for five additional months. One of them also had evidence of healing osteoblastic metastases on CT scan. Comparison of pre-treatment gadolinium-enhanced brain MRI in a patient with recurrent glioblastoma multiforme verus post-treatment gadolinium-enhanced MRI after 3 cycles of phenylacetate (150 mg/kg BID), confirmed this partial response. This evidence of healing metastases continued despite steadily rising serum PSA concentrations over the same period of time from 1.0 to 80 ng/ml. Finally, one patient has had subjective amelioration of bone pain for 1 month. <b>Clinical Toxicities</b>. Reversible neurological toxicity was the most common side effect associated with the administration of phenylacetate twice daily. All patients experienced mild (grade 1) somnolence (peak serum concentration, mean ± SD: 2.9 ± 0.5 mM). Three patients who received 150 mg/kg BID developed dose-limiting neurotoxicity (serum concentrations, mean ± SD: 5.3 ± 1.7 mM). One with glioblastoma multiforme experienced transient spatial disorientation and hypoacusis, associated with drug accumulation (phenylacetate concentration: 7.3 mM). Another with anaplastic astrocytoma experienced grade II somnolence that was temporarily related to peak concentrations of phenylacetate (mean peak concentration: 4.7 mM). A third patient with prostate cancer who suffered from suramin-induced sensory neuropathy experienced gradual deterioration of his condition over the first ten days of phenylacetate administration (peak and trough levels, mean ± SD: 3.9 ± 0.4 and 0.9 ± 0.4 mM), at which time therapy was discontinued. In this patient, the side effects improved gradually over 3 months.

0217Three patients with a history of angina pectoris, supraventricular tachycardia or palpitations associated with mitral valve prolapse reported reversible exacerbation of their usual symptoms during the infusion of phenylacetate. This was likely related to significant fluid shifts induced by the high sodium content of the drug formulation. No such symptoms were noted in patients free of cardiovascular impairment.

0218This trial was designed to overcome the problem of rapid drug accumulation associated with the delivery of high doses of phenylacetate by CIVI. The goal was to achieve transient peak phenylacetate concentrations in the range found to be active preclinically ( 2 mM) and allow enough time for drug elimination between each dose of phenylacetate. The pharmacokinetic information derived from the first trial of phenylacetate was used to stimulate several intermittent dosing regimen. Administering 125 mg/kg/dose of phenylacetate twice daily (9 hours apart) as 60 minute infusions, was predicted to achieve serum drug concentrations between 3 and 5 mM without drug accumulation, in more than 95% of patients. This dose was therefore chosen as the starting point for the trial.

0219The results confirm that most patients treated with 125 and 150 mg/kg/dose of phenylacetate achieve peak serum drug concentrations in the range of 3-5 mM. No patient treated at the first dose level experienced undesirable drug accumulation, which occurred in 1 of 8 patients treated at the higher level. Patients' exposure to potential active concentrations of phenylacetate was equal to 40% of their total treatment time. The accuracy of the pharmacokinetic simulation successfully eliminated the need for multiple escalation steps and allowed the clinical questions to be answered rapidly.

0220The trial enabled the characterization of the toxicity of phenylacetate with respect to peak drug levels. The 125 mg/kg dose level was associated with a mean peak serum concentration of 3.0 mM and grade I neurocortical toxicity (somnolence). The temporal relationship between drug infusion and the onset of somnolence was noted in all patients treated at this dose level. Gradual recovery between each infusion was the rule. The second dose level (150 mg/kg BID) was associated with grade I neurotoxicity in five patients (mean peak serum concentration: 3.7 mM) and more severe toxicity in three patients whose mean peak drug concentration was 5.3 mM. Except for the deterioration seen in a patient with pre-existing suramin-induced sensory neuropathy, neurotoxicity from phenylacetate has been acute and reversible.

0221Evidence for the induction of phenylacetate clearance is available from the first trial of phenylacetate. The demonstration was indirect, however, due to frequent adjustments in drug dosage within each cycle of therapy. With the current fixed-dosing regimen; a 44% mean decline in the AUC associated with identical doses of drug given at the beginning and end of the two week treatment was shown. This verifies the hypothesis that PA induces its own clearance by the hepatic enzyme phenylacetyl Coenzyme A:glutamine acyltransferase. The induction of metabolism is not sustained after treatment is discontinued, lending further support to the hypothesis that metabolism of phenylacetate is self-induced. The observation of autoinduction of clearance is relevant to the optimal duration of phenylacetate therapy and the eventual need for dose modification over time.

0222The partial and minor responses noted in patients with malignant gliomas were not expected from a differentiating agent causing cytostasis <i>in vitro.</i> There is evidence (described herein), however, that phenylacetate inhibits the mevalonate pathway of cholesterol synthesis, which malignant astroglia rely on predominantly for their growth. This could result in cell death and decreased tumor size. An alternative mechanism relates to the depletion of circulating glutamine, a major source of energy for various tumor cell types. The metabolism of phenylacetate yields phenylacetylglutamine and causes significant reductions of plasma glutamine after rapid infusion. In this respect, although repeated administration of phenylacetate was not associated with sustained declines in plasma glutamine concentrations, a 70 kg patient receiving 125 mg/kg/dose twice daily would excrete more than 90 moles of glutamine a day under as urinary phenylacetylglutamine. At present, whether this is rejected at the tumor site is not known. Assessing tumor response in patients treated with differentiating agents may be problematic. The difficulty is especially acute in patients with hormone-independent prostate cancer, for whom PSA has been proposed as the best follow up tool available. Since PSA production is organ-specific and directly correlated with the degree of tumor differentiatio, phenotypic reversion induced by phenylacetate could potentially be associated with rising serum levels of the marker. This would render PSA clinically useless as a marker of disease burden and emphasize the role of the more traditional anatomic criteria. The latter are unfortunately inappropriate for evaluating the vast majority of patients with advanced prostate cancer who lack soft tissue metastases. Therefore, conventional anatomic criteria and performance status scores (including pain relief) be used to describe responses until further experience with PSA in this context becomes available. Applying these guidelines, five of nine patients with metastatic, hormone-independent prostate cancer appear to have clinically benefitted from phenylacetate therapy.

0223Phenylacetate given at a dose of 125 mg/kg BID for two consecutive weeks is well tolerated and is associated with antitumor activity in patients with high grade gliomas and advanced prostate cancer.

0224<i>In vivo</i>, PA is conjugated with glutamine to form phenylacetylglutamine (PAG). PA, however, has an unpleasant odor which limits patient acceptability. Phenylbutyrate (PB) is an odorless compound which also possesses <i>in vitro</i> activity (0.5 to 2 mM) and is believed to undergo rapid conversion to PA by <i>in vivo</i> β-oxidation.

0225A phase I study was undertaken to examine the pharmacokinetics (PK) of PB and characterized the disposition of the two metabolites (PA and PAG). Fourteen patients with cancer (mean age 51.8 ± 13.8 years) received a 30 min. infusion of PB at three dose levels (600, 1200 and 2000 mg/m²). Serial blood samples and a 24 hour urine collection were obtained. Samples were assayed by HPLC (CV &lt; 10%). A model to simultaneously describe the PK of all three compounds was developed using ADAPT II. Data were modeled as molar equivalents.

0226The model fit the data well as demonstrated by mean (±S.D.) coefficients of determination (r²) for PB, PA, and PAG which were 0.96±0.07, 0.88±0.10 and 0.92±0.06, respectively. The intrapatient CV% around the parameter estimates were small (range 87.2% to 33.5%). PB achieved peak concentration in the range of <i>in vitro</i> tumor activity and exhibited saturable elimination (Km=34.1±18.1 µg/ml and V_max=18.1±18 mg/hr/kg). Metabolism was rapid; T_max for PA and PAG was 1 and 2 hours, respectively. The conversion of PB to PA was extensive (80±12.6%), but serum concentration of PA were low due to rapid, subsequent conversion to PAG. The ratio of PB AUC/PA AUC was 2.25. PB, thus, shows activity as an independent therapeutic agent, not necessarily solely as a prodrug of PA.

SECTION P:

NAPA AND NAPB ALTERATIONS OF LIPID METABOLISM

0227NaPA has shown consistent ability to induce biochemical changes related to lipid metabolism. Such activity is of value in the treatment of lipid metabolism related disorders, cancer and cardiovascular disease.

0228As discussed previously, NaPA and its derivatives activate the human peroxisomal proliferator activated receptor (PPAR). The PPAR regulates the expression of key enzymes involved in lipid metabolism such as acyl-CoA oxidase and the cytochrome P450IV family of enzymes. Other agents are capable of activating the PPAR, e.g., fatty acids and hypolipidimic drugs such as fibric acid derivatives (clofibrate). Drugs in this group have been highly effective in lowering serum triglyceride levels and therefore are widely used to reduce the level of atherogenic lipoproteins associated with elevated risk of coronary artery disease.

0229Glioma cells accumulate lipids following treatment with PA. Thus, cancer cells are dependent on free fatty acids for some energy metabolism. There is a 30-50% reduction is lipids in patients treated with PA and PB. The lipid-lowering capacity of PA is demonstrated in several cancer patients treated with 300-350 mg/kg/day (IV) NaPA Table 17. These patients showed a 30-60% decline in triglycerides (TG) levels while on the therapy. For example: Patient S.L. showed TG levels reduced from 169≠5 mg/dl to 75±21 mg/dl during a course of 14 IV treatments with 350 mg/kg/day PA. Two weeks after PA treatment was discontinued, TG levels recovered and reached 185 mg/dl. Similar changes were observed in other patients. See Table 17. <tables id="tabl0016" num="0016"><table frame="all"><title>Table 17:</title><tgroup cols="3" colsep="1" rowsep="0"><colspec colnum="1" colname="col1" colwidth="52.50mm" /><colspec colnum="2" colname="col2" colwidth="52.50mm" /><colspec colnum="3" colname="col3" colwidth="52.50mm" /><thead valign="top"><row rowsep="1"><entry namest="col1" nameend="col3" align="left">Serum Triglyceride Levels Upon Treatment with PA</entry></row><row rowsep="1"><entry namest="col1" nameend="col1" align="left">Patient</entry><entry namest="col2" nameend="col2" align="left">TG Before</entry><entry namest="col3" nameend="col3" align="left">TG After</entry></row></thead><tbody valign="top"><row><entry namest="col1" nameend="col1" align="left">1.S.L.</entry><entry namest="col2" nameend="col2" align="left">169</entry><entry namest="col3" nameend="col3" align="left">75</entry></row><row><entry namest="col1" nameend="col1" align="left">2. S.G.</entry><entry namest="col2" nameend="col2" align="left">260</entry><entry namest="col3" nameend="col3" align="left">144</entry></row><row><entry namest="col1" nameend="col1" align="left">3.H.L.</entry><entry namest="col2" nameend="col2" align="left">295</entry><entry namest="col3" nameend="col3" align="left">135</entry></row><row rowsep="1"><entry namest="col1" nameend="col1" align="left">4.L.A.</entry><entry namest="col2" nameend="col2" align="left">228</entry><entry namest="col3" nameend="col3" align="left">143</entry></row></tbody></tgroup></table></tables>

0230It thus appears that PA and PB stimulate PPAR increase of peroxidation and decrease of DNA synthesis). In addition, because PA/PB also inhibits the mevalonate pathway (see above) which decreases protein prenylation (such as ray protein, G proteins and nuclear lamins), PA acts to decrease cholesterol synthesis prior to DNA synthesis. A reduced prenylated <i>ras</i> fails to activate a proliferation signal. Thus, as noted above, HMG CoA reductase inhibitors, e.g. lovastatin, provide a synergistic combination with PA/PB as measured by invasiveness and metastasis.

0231Furthermore, the TG-reducing activity of PA is essentially free of adverse effects, and is as effective or better than that of clofibrate and its derivatives (Olsson et al., Atherosclerosis 27:279-297, 1977).

SECTION Q:

INDUCTION OF HbF BY PHENYLACETIC ACID AND ITS DERIVATIVES IN MALIGNANT AND NONMALIGNANT CELLS

0232<b>General ability of NaPA and its derivatives to induce production of HbF.</b> The ability of oral administration of sodium 4-phenylbutyrate to increase fetal hemoglobin production was assayed. To do so, the percentage of red cells containing fetal hemoglobin (F cells) was measured by flow-cytometric single-cell immunofluorescent assays in 15 patients (7 females and 8 males) with hereditary urea-cycle disorders who had received sodium 4-phenylbutyrate therapy for 5 to 65 months. In determining the differences in low levels of fetal hemoglobin in persons without anemia, the measurement of the percentage of F cells is more precise than conventional measurements of fetal hemoglobin as a percentage of total hemoglobin. The mean percentage of F cells was significantly higher in the patients than in normal subjects: <tables id="tabl0017" num="0017"><table frame="all"><tgroup cols="4" colsep="1" rowsep="0"><colspec colnum="1" colname="col1" colwidth="39.37mm" /><colspec colnum="2" colname="col2" colwidth="39.37mm" /><colspec colnum="3" colname="col3" colwidth="39.37mm" /><colspec colnum="4" colname="col4" colwidth="39.37mm" /><thead valign="top"><row rowsep="1"><entry namest="col1" nameend="col1" rowsep="0" align="left">Patient No.</entry><entry namest="col2" nameend="col2" align="left">Age</entry><entry namest="col3" nameend="col3" align="left">Dose of Phenylbutyrate</entry><entry namest="col4" nameend="col4" align="left">F Cells*</entry></row><row rowsep="1"><entry namest="col1" nameend="col1" /><entry namest="col2" nameend="col2" align="left">yr</entry><entry namest="col3" nameend="col3" align="left">g/kg/day</entry><entry namest="col4" nameend="col4" align="left">%</entry></row></thead><tbody valign="top"><row><entry namest="col1" nameend="col1" align="left">1</entry><entry namest="col2" nameend="col2" align="left">29</entry><entry namest="col3" nameend="col3" align="left">0.30</entry><entry namest="col4" nameend="col4" align="left">9.4</entry></row><row><entry namest="col1" nameend="col1" align="left">2</entry><entry namest="col2" nameend="col2" align="left">11</entry><entry namest="col3" nameend="col3" align="left">0.67</entry><entry namest="col4" nameend="col4" align="left">20.4</entry></row><row><entry namest="col1" nameend="col1" align="left">3</entry><entry namest="col2" nameend="col2" align="left">6</entry><entry namest="col3" nameend="col3" align="left">0.62</entry><entry namest="col4" nameend="col4" align="left">0.5</entry></row><row><entry namest="col1" nameend="col1" align="left">4</entry><entry namest="col2" nameend="col2" align="left">5</entry><entry namest="col3" nameend="col3" align="left">0.48</entry><entry namest="col4" nameend="col4" align="left">6.5</entry></row><row><entry namest="col1" nameend="col1" align="left">5</entry><entry namest="col2" nameend="col2" align="left">2</entry><entry namest="col3" nameend="col3" align="left">0.58</entry><entry namest="col4" nameend="col4" align="left">22.7</entry></row><row><entry namest="col1" nameend="col1" align="left">6</entry><entry namest="col2" nameend="col2" align="left">13</entry><entry namest="col3" nameend="col3" align="left">0.46</entry><entry namest="col4" nameend="col4" align="left">7.7</entry></row><row><entry namest="col1" nameend="col1" align="left">7</entry><entry namest="col2" nameend="col2" align="left">2</entry><entry namest="col3" nameend="col3" align="left">0.38</entry><entry namest="col4" nameend="col4" align="left">11.8</entry></row><row><entry namest="col1" nameend="col1" align="left">8</entry><entry namest="col2" nameend="col2" align="left">11</entry><entry namest="col3" nameend="col3" align="left">0.41</entry><entry namest="col4" nameend="col4" align="left">1.9</entry></row><row><entry namest="col1" nameend="col1" align="left">9</entry><entry namest="col2" nameend="col2" align="left">6</entry><entry namest="col3" nameend="col3" align="left">0.27</entry><entry namest="col4" nameend="col4" align="left">1.9</entry></row><row><entry namest="col1" nameend="col1" align="left">10</entry><entry namest="col2" nameend="col2" align="left">5</entry><entry namest="col3" nameend="col3" align="left">0.62</entry><entry namest="col4" nameend="col4" align="left">2.3</entry></row><row><entry namest="col1" nameend="col1" align="left">11</entry><entry namest="col2" nameend="col2" align="left">6</entry><entry namest="col3" nameend="col3" align="left">0.65</entry><entry namest="col4" nameend="col4" align="left">21.1</entry></row><row><entry namest="col1" nameend="col1" align="left">12</entry><entry namest="col2" nameend="col2" align="left">21</entry><entry namest="col3" nameend="col3" align="left">0.29</entry><entry namest="col4" nameend="col4" align="left">1.7</entry></row><row><entry namest="col1" nameend="col1" align="left">13</entry><entry namest="col2" nameend="col2" align="left">3</entry><entry namest="col3" nameend="col3" align="left">0.47</entry><entry namest="col4" nameend="col4" align="left">7.6</entry></row><row><entry namest="col1" nameend="col1" align="left">14</entry><entry namest="col2" nameend="col2" align="left">6</entry><entry namest="col3" nameend="col3" align="left">0.64</entry><entry namest="col4" nameend="col4" align="left">40.5</entry></row><row><entry namest="col1" nameend="col1" align="left">15</entry><entry namest="col2" nameend="col2" align="left">2</entry><entry namest="col3" nameend="col3" align="left">0.63</entry><entry namest="col4" nameend="col4" align="left">29.7</entry></row><row><entry namest="col1" nameend="col1" align="left">Patients, mean±SE</entry><entry namest="col2" nameend="col2" /><entry namest="col3" nameend="col3" align="left">--</entry><entry namest="col4" nameend="col4" align="left">12.4±3.1**</entry></row><row rowsep="1"><entry namest="col1" nameend="col1" align="left">Normal subjects, mean±SE</entry><entry namest="col2" nameend="col2" /><entry namest="col3" nameend="col3" align="left">--</entry><entry namest="col4" nameend="col4" align="left">3.1±0.2</entry></row></tbody></tgroup><tgroup cols="4" colsep="0" rowsep="0"><colspec colnum="1" colname="col1" colwidth="39.37mm" /><colspec colnum="2" colname="col2" colwidth="39.37mm" /><colspec colnum="3" colname="col3" colwidth="39.37mm" /><colspec colnum="4" colname="col4" colwidth="39.37mm" /><tbody valign="top"><row><entry namest="col1" nameend="col4" align="justify">*F cells were measured with a flow-cytometric technique that counts the percentage of F cells in a total of 10,000 red cells. The difference between repeated measurements was less than 10 percent.</entry></row><row><entry namest="col1" nameend="col4" align="justify">**p = 0.005 by the Kolmogorov-Smimov two-sample test for the comparison of the F-cell values in the 15 patients with urea-cycle disorders and the values in 293 normal adults. The percentage of F cells reaches the range of values found in normal adults at about two years of age.</entry></row></tbody></tgroup></table></tables>

EXAMPLE 13

:

In vitro study of sickle cell and beta-thalassemia responses to NaPA/NaPB

0233An in vitro study was conducted on cells derived from patients with homozygous sickle cell disease or B-thalassemia who had been admitted to the Clinical Center of the National Institutes of Health (NTH) for routine evaluation, or normal blood donors from the Department of Transfusion Medicine (NIH). Approximately 20-25 ml of blood was obtained for erythroid cell cultures. Diagnosis of SS or B-thal was made on the basis of (1) hemoglobin electrophoresis on alkaline cellulose acetate and on acid citrate sugar; (2) peripheral blood examination; and occasionally (3) DNA and RNA analysis of bone marrow aspirates. When possible, diagnosis was confirmed by family studies. Routine hematologic profiles were performed on a Coulter Model S.

0234Peripheral blood mononuclear cells were isolated by centrifugation on a gradient of Ficoll-Hypaque and cultured for 7 days (phase I) in alpha-minimal essential medium supplemented with 10% fetal calf serum (FCS) (both from GIBCO, Grand Island, NY), 1 µg/ml cyclosporin A (Sandoz, Basel, Switzerland) and 10% conditioned medium collected from bladder carcinoma 5637 cultures (Myers CD, Katz FE, Joshi G, Millar JL: A cell line secreting stimulating actors for CFU-GEMM culture. Blood 64:152, 1984). In phase II, the non-adherent cells were recultured in alpha-medium supplemented with 30% FCS, 1% deionized bovine serum albumin, 1x10⁵M 2-mercaptoethanol, 1.5 mM glutamine (unless otherwise indicated), 1x10⁶ M dexamethasone, and 1 U/ml human recombinant Epo (Ortho Pharmaceutical Co., Raritan, NJ). These cultures yielded up to 10⁶ erythroid cells per milliliter of blood. Cell viability was determined by Trypan Blue exclusion. Phenylacetic acid, 4-phenylbutyric acid, p-hydroxyphenylcetic acid, p-chlorophenylacetic acid, and butyric acid (Sigma, St. Louis, MO) were dissolved in distilled water and brought to pH 7.0 by the addition ofNaOH. 5-Azacytidine and hydroxyurease was obtained from Sigma, and PAG was obtained from S. Brusilow (Johns Hopkins, Baltimore, MD).

0235Differentiation was assessed morphologically by preparing cytocentrifuge slides stained with alkaline benzidine and Giemsa. The number of Hb-containing cells was determined using the benzidine-HCl procedure (Orkin SH, Harosi FL, Leder P: Differentiation of erythroleukemic cells and their somatic hybrids. <u>Proc Natl. Acad. Sci</u> USA 72:98, 1975). Hbs were characterized and quantitated by cation exchange high performance liquid chromatography (HPLC) of cell lysates as previously described (Huisman TH: Separation of hemoglobins and hemoglobin chains by high performance liquid chromatography. <u>J Chromatography</u> 418:277, 1987). Total Hb in lysates prepared from a known number of Hb-containing (benzidine-positive) cells was measured using either the tetramethylbenzidine procedure (Sigma kit, Catalog No. 527) or by cation exchange HPLC (measuring total area under chromatogram). Standard Hb solutions (Isolab, Inc., Akron, OH) were used for reference. Mean cellular Hb (MCH) was calculated by dividing the total Hb content of the lysate by the number of benzidine-positive cells.

0236Cytoplasmic RNA was separated on 1% agarose-formaldehyde gels. RNA isolation, gel electrophoresis, transfer onto Nytran membranes (Schleicher &amp; Schuell, Inc., Keene, NH), hybridization with radiolabeled DNA probes, and autoradiography (Kodak X-ray film XAR5) were described [Samid D, Yeh A, Presanna P: Induction of erythroid differentiation and fetal hemoglobin production in human leukemic cells treated with phenylacetate. <u>Blood</u>, 80:1576, 1992]. The human globin cDNA probes included JW101 (alpha), JW102 (beta), and a 0.6 kb EcoRI/HindIII fragment of the 3' end of human G-gamina-globin gene. Probes were labeled with [³²P]dCTP (New England Nuclear, Boston, MA) using a random primed DNA labeling kit (Boehringer, Mannheim, Germany). <b>Results</b>. Addition of NaPA or NaPB to phase II erythroid cultures resulted in reduced cell proliferation with no apparent change in cell viability. Cytostatis was associated with a decline in total Hb produced per culture; however, both Hb content per cell (MCH) and the proportion ofHbF (%HbF) increased upon treatment (Figure 2). The extent of changes observed was dose- and time-dependent: the earlier the drugs were added during the second phase of growth, the higher was the increase in % HbF, however, cell yields were proportionately decreased. For example, addition of 5 mM NaPA to normal precursors on day 2 caused approximately 90% decrease in cell number along with a 12-fold increase in % HbF, a determined on day 13. When treatment was initiated on day 67, cell number decreased on by 60% compared to controls, and % HbF increased 3.3-fold. In order to obtain sufficient cells for further analysis, subsequent experiments involved the addition of drugs on days 6-7, and cells were harvested on day 13. Under these conditions, results were reproduced in cultures derived from 6 normal donors as well as 4 patients with sickle cell anemia and 4 patients with B-thal. NaPA (5 mM) and NaPB (2.5 mM) caused a significant increase in both MCH(3 8-100%) and the proportion of HbF produced. In the case of homozygous SS patients, % HbF was elevated 2.0-4.1 fold (mean 3.0) by 4 mM NaPA, and 3.2-5.6 fold (mean 4.0) by 2.5 mM NaPB. The latter was associated with a 12 ± 3% decrease in HbS levels, with no change in HbA₂ (Figure 3).

0237As in K562 cells, increased HbF production by NaPA or NaPB in primary cultures of normal or SS cells appears to be due to pre-translational regulation of gamma-globin expression. Northern blot analysis showed dose-dependent increase (up to 5 fold) in the steady-state levels of gamma globin mRNA, accompanied by a slight decrease (less than two fold) in the amounts of beta globin transcripts. There was no change in alpha globin expression.

0238PAG, the end-metabolite of both NaPB and NaPA, is formed by phenylacetate conjugation to glutamine with subsequent excretion in the urine. PAG was found to be inactive on erythroid proliferation and HbF accumulation. Glutamine starvation of the non-malignant erythroid cells had no effect on either cell growth or HbF production, nor did it enhance the efficacy of NaPA.

0239The effect of NaPA with other drugs was also assayed. When used alone in cultures derived from normal donors (HbF base levels of 0.8-2.0 %), NaPA (5 mM) and hydroxyurease (0.05 mM) increase % HbF by 3.5 and 2.0-fold, respectively; the combination of the two resulted in a 4.7-fold increase in HbF. NaPA also augmented HbF stimulation by butyrate (0.5 mM) (from 3.1 to 7.15-fold), and of 5-Azacytidine (2 uM) (from 2.5 to 6.6-fold). These results indicate that NaPA when added to suboptimal, non-toxic doses of other drugs, can potentiate HbF production with significant cytostasis and no signncant change in cell viability.

0240As exemplified below in Table 18, combination treatment comprising administration ofNaPA (or a pharmaceutically acceptable derivative of phenylacetic acid) simultaneously with hemin, a known stimulator of HbF production, synergistically increases the induction of erythroid differentiation, as indicated by the increase in the number of benzidine positive cells, and HbF production. In K562 cells, the range of increase in the production of HbF with this combination treatment varied from 1.5 to 5 times that produced by treatment with 10 mM PA alone. Further, treatment with NaPB in combination with hemin also resulted in classical synergism. Similar results were also obtained with PB in non-malignant erythroid progenator primary cells. In all cases, treatment with both drugs was maintained for 4-6 days prior to measurement of HbF. <tables id="tabl0018" num="0018"><table frame="all"><title>Table 18:</title><tgroup cols="4" colsep="1" rowsep="1"><colspec colnum="1" colname="col1" colwidth="39.37mm" /><colspec colnum="2" colname="col2" colwidth="39.37mm" /><colspec colnum="3" colname="col3" colwidth="39.37mm" /><colspec colnum="4" colname="col4" colwidth="39.37mm" /><thead valign="top"><row><entry namest="col1" nameend="col4" align="left">STIMULATION OF HbF BY NaPA IN COMBINATION WITH HEMIN - K562 MODEL</entry></row><row><entry namest="col1" nameend="col1" align="left"><b>R</b>_<b>1</b></entry><entry namest="col2" nameend="col2" align="left"><b>% Benzidine pos.</b></entry><entry namest="col3" nameend="col3" align="left"><b>Hb pg/cell</b></entry><entry namest="col4" nameend="col4" align="left"><b>Viability</b></entry></row></thead><tbody valign="top"><row><entry namest="col1" nameend="col1" align="left">CONTROL</entry><entry namest="col2" nameend="col2" align="left">>0.01</entry><entry namest="col3" nameend="col3" align="left">0.26</entry><entry namest="col4" nameend="col4" align="left">97</entry></row><row><entry namest="col1" nameend="col1" align="left">NaPA (10mM)</entry><entry namest="col2" nameend="col2" align="left">1.6-3.1</entry><entry namest="col3" nameend="col3" align="left">0.91</entry><entry namest="col4" nameend="col4" align="left">96</entry></row><row><entry namest="col1" nameend="col1" align="left">NaPA (10mM) + H</entry><entry namest="col2" nameend="col2" align="left">25.4-32.6</entry><entry namest="col3" nameend="col3" align="left">4:03</entry><entry namest="col4" nameend="col4" align="left">92</entry></row><row><entry namest="col1" nameend="col1" align="left">NaPA (5mM) + H</entry><entry namest="col2" nameend="col2" align="left">12.6</entry><entry namest="col3" nameend="col3" align="left">2.34</entry><entry namest="col4" nameend="col4" align="left">99</entry></row><row><entry namest="col1" nameend="col1" align="left">NaPA (2.5mM) + H</entry><entry namest="col2" nameend="col2" align="left">8.1</entry><entry namest="col3" nameend="col3" align="left">1.95</entry><entry namest="col4" nameend="col4" align="left">94</entry></row><row rowsep="1"><entry namest="col1" nameend="col1" align="left">HEMIN (20µM)</entry><entry namest="col2" nameend="col2" align="left">2.9</entry><entry namest="col3" nameend="col3" align="left">1.04</entry><entry namest="col4" nameend="col4" align="left">98</entry></row><row><entry namest="col1" nameend="col1" align="left">CONTROL</entry><entry namest="col2" nameend="col2" align="left">2.1</entry><entry namest="col3" nameend="col3" align="left">0.65</entry><entry namest="col4" nameend="col4" align="left">97</entry></row><row><entry namest="col1" nameend="col1" align="left">NaPA (2.5mM)</entry><entry namest="col2" nameend="col2" align="left">2.6</entry><entry namest="col3" nameend="col3" align="left">0.91</entry><entry namest="col4" nameend="col4" align="left">97</entry></row><row><entry namest="col1" nameend="col1" align="left">NaPA (5mM)</entry><entry namest="col2" nameend="col2" align="left">7.7</entry><entry namest="col3" nameend="col3" align="left">1.04</entry><entry namest="col4" nameend="col4" align="left">97</entry></row><row><entry namest="col1" nameend="col1" align="left">NaPA (10mM)</entry><entry namest="col2" nameend="col2" align="left">14.3</entry><entry namest="col3" nameend="col3" align="left">nd</entry><entry namest="col4" nameend="col4" align="left">96</entry></row><row><entry namest="col1" nameend="col1" align="left">HEMIN (20µM)</entry><entry namest="col2" nameend="col2" align="left">13.8</entry><entry namest="col3" nameend="col3" align="left">2.34</entry><entry namest="col4" nameend="col4" align="left">nd</entry></row><row rowsep="1"><entry namest="col1" nameend="col1" align="left">NaPA (5mM) + H</entry><entry namest="col2" nameend="col2" align="left">42.3</entry><entry namest="col3" nameend="col3" align="left">5.2</entry><entry namest="col4" nameend="col4" align="left">97</entry></row></tbody></tgroup></table></tables>

SECTION R

:

MODES OF DRUG ADMINISTRATION

0241NaPA (or PAA derivatives) may be administered locally or systemically. Systemic administration means any mode or route of administration which results in effective levels of active ingredient appearing in the blood or at a site remote from the site of administration of said active ingredient.

0242The pharmaceutical formulation for systemic administration according to the invention may be formulated for intravenous, intramuscular, subcutaneous, oral, nasal, enteral, parenteral, intravesicle or topical administration. In some cases, a combination of types of formulations may be used simultaneously to achieve systemic administration of the active ingredient.

0243Suitable formulations for oral administration include hard or soft gelatin capsules, dragees, pills, tablets (including coated tablets), elixirs, suspensions, and syrups or inhalations.

0244Solid dosage forms in addition to those formulated for oral administration include rectal suppositories.

0245The compounds of the present invention may also be administered in the form of an implant.

0246Suitable formulations for topical administration include creams, gels, jellies, mucilages, pastes and ointments.

0247Suitable injectable solutions indude intravenous, subcutaneous, and intramuscular injectable solutions. The compounds of the present invention may also be administered in the form of an infusion solution or as a nasal inhalation or spray.

0248The compounds of the present invention may also be used concomitantly or in combination with selected biological response modifiers, e.g., interferons, interleukins, tumor necrosis factor, glutamine antagonists, hormones, vitamins, as well as anti-tumor agents and hematopoietic growth factors, discussed above.

0249It has been observed that NaPA is somewhat malodorous. Therefore, it may be preferable to administer this compound in the presence of any of the pharmaceutically acceptable odor-masking excipients or as its precursor phenylbutyrate (or a derivative or analog thereof) which has no offensive odor.

0250The PAA and its pharmaceutically acceptable derivatives to be used as antitumor agents can be prepared easily using pharmaceutical materials which themselves are available in the art and can be prepared by established procedures. The following preparations are illustrative of the preparation of the dosage forms of the present invention, and are not to be construed as a limitation thereof.

EXAMPLE 14

: Intravesical Treatment

0251Local application of PA/PB or a derivative/analog to a body surface, such as a mucosal surface, or within a body cavity, such as the bladder, kidney, uterine, vagina etc., can be used to prevent or treat a pathology involving that surface or cavity. In this manner, the PA can be targeted selectively to the particular surface or cavity so as to maintain a relatively high concentration of the PA at that site compared to elsewhere in the body.

0252For instance, bladder cancer can be treated by an intravesical method. The bladder cancer patient can abstain from food and water for a substantial period of time prior to the treatment, such as for 8-12 hours. Following this abstention, the patient can be catheterized. Approximately 50-150 mls of a solution of having a concentration of approximately 2.0 - 200.0 mM, preferably 2 - 20 mM, sodium phenylacetate or 1.0-100 mM, preferably 1-10 mM, sodium phenybutyrate or other equipotent amount of a PA analog will be instilled directly into the bladder. The patient will then be requested to retain the instilled fluid for as long as possible. This treatment will be repeated, such as once daily for two-four weeks followed by two weeks of drug holiday. Cycles such as this can be repeated, such as for up to 6 months. Similarly, kidney cancers could also be similarly treated.