Mesoporous silica compositions for modulating immune responses

MESOPOROVS SILICA COMPOSITIONS FOR MODULATING IMMUNE RESPONSES

FIELD OF THE INVENTION

This invention relates to biocompatiblc irÿectable compositions.

BACKGROUND OF THE INVENTION

Vaccines that require ex vivo manipulation of cells, such as most cell based therapy, lead to poor lymph node homing and limited efficiency.

SUMMARY OF THE INVENTION

The invention provides a solution to problems and drawbacks associated with earlier approaches. Accordingly, the invention features a composition comprising raesoporous silica (MPS) rods comprising an immune cell recruitment compound and an immune cell activation compound. The rods comprise pores of between 2-50 nm in diameter, e.g., pores of between 5-25 nm in diameter or pores of between 5-10 ran in diameter. In preferred embodiments, the rods comprise pores of approximately 8 ran in diameter. The length of the micro rods ranges from 5 pm to 500 pm. In one example, the rods comprise a length of 5-25 tim, e.g., 10-20 gm. bi other examples, the rods comprise length of 50 pm to 250 pm. Robust recruitment of cells was achieved with MPS microparticle compositions characterized as having a higher aspect ratio, e.g., with rods comprising a length of 80 pm to 120 pm.

Exemplary immune cell recruitment compounds include granulocyte macrophage-colony stimulating factor (GM-CSF). Other examples of recruitment compounds include chemokines, e.g., a chemokine selected from the group consisting of chemokine (C-C motif) ligand 21 (OCL-21, GenBank Accession Number: (aa)

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CAG29322.J (GI :47496599), (na)EF064765.1 (Gl: 117606581 ), chemokine (C-C motif) ligand 19 (CCL-19, GenBank Accession Number: (aa) CAG33149.1 (Gl:48145853), (na) NM_006274.2 (GI:22165424), as well as FMS like tyrosine kinase 3 ligand (Flt3) ligand; Genbank Accession Number: (aa) AAI44040 (GI:219519004), (na) NM_004119 (Gl: GI: 121114303).

Immune cell activating compounds include TLR agonists. Such agonists include pathogen associated molecular patterns (PAMPs), e.g., an infectionmimicking composition such as a bacterially-derived inununomodulator (a.k.a., danger signal). TLR agonists include nucleic acid or lipid compositions [e.g., monophosphoryl lipid A (MPLA)]. In one example, the TLR agonist comprises a TLR9 agonist such as a cytosine-guanosine oligonucleotide (CpG-ODN), a poly(ethylenimine) (PEI)-condensed oligonucleotide (ODN) such as PEI-CpG-ODN, or double stranded deoxyribonucleic acid (DNA). For example, the device comprises 5 pg, 10pg, 25pg, 50 pg, 100 pg, 250gg, or 500 pg of CpG-ODN. In another example, the TLR agonist comprises a TLR3 agonist such as polyinosinepolycytidylic acid (poly I:C), PEI-poly (I:C), polyadenylic-polyuridylic acid (poly (A:U)), PEI-poly (A:U), or double stranded ribonucleic add (RNA). Lipopolysaccharide (LPS) is also useful for this purpose.

To generate an immune response, the composition comprises an antigen to which the immune response is desired. For example, the composition comprises a tumor antigen. In preferred embodiments, the antigen comprises a tumor cell lysate (e.g., from a tumor biopsy sample that was taken from the subject to be treated). The subject is preferably a human patient, but the compositions/systems are also used for veterinary use, e.g., for treatment of companion animals such as dogs and cats as well as performance animals such as horses and livestock such as cattle, oxen, sheep, goats, and the like.

Antigen presenting cells such as dendritic cells (DC’s) traffick through the MPS device, i.e., the cells do not stay in the device permanently. The immune cells are recruited to the device and are present in the device temporarily while they encounter antigen and are activated. Immune cells such as DC’s then home to a lymph node. They accumulate in a lymph node, e.g., a draining lymph node, not in the MPS device. The accumulated cells in the lymph node further augment the o

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PCT/US2013/036827 immune response to the vaccine antigen resulting in a strong cellular and humoral response to the antigen.

Thus, a method of inducing a systemic antigen-specific immune response to a vaccine antigen, comprises administering to a subject the MPS composition described above. The composition is loaded into a syringe and injected into the body of the recipient. For example, a small amount (e.g., 50-500 μΐ, e.g.., 150 μΐ) is administered subcutaneously. Typically, the device (MPS composition) is infiltrated with cells by Day 2 post-administration, and by Day 5-7, a draining lymph node is swollen with cells that have migrated out of the device and to the lymph node tissue, where they accumulate and further propagate an antigen-specific response. The compositions are therefore useful to induce homing of immune cells to a lymph node. The MPS composition need not be removed after vaccination therapy. The composition may remain in the body at the site of administration, where it degrades. For example, the MPS particles are consumed by macrophages over time and then cleared from the body.

A method of making a vaccine comprises providing a suspension of mesoporous silica rods, contacting the rods with a vaccine antigen, an immune cell recruitment compound, and an immune cell activation compound. The vaccine antigen comprises a tumor cell lysate, the recruitment compound comprises GM-CSF, and the activation compound comprises CpG ODN. In some cases, the rods are modified with glycolic acid or lactic acid prior to contacting the rods with one or more of the following compounds: vaccine antigen, recruitment compound, or activation compound. Optionally, the MPS composition/device is fabricated with MPS rods, an immune cell recruitment compound, and an immune cell activation compound (optionally, with glycolic or lactic acid modification), stored, and/or shipped to the site of use, whereupon the patient-specific tumor antigen preparation or lysate is added to the rod suspension prior to administration, e.g., 1,2, 6,12,24, or 48 hours, prior to administration to the patient.

The compounds that are loaded into the MPS compostion are processed or purified. For example, polynucleotides, polypeptides, or other agents arc purified and/or isolated. Specifically, as used herein, an “isolated” or “purified” nucleic acid molecule, polynucleotide, polypeptide, or protein, is substantially free of other cellular material, or culture medium when produced by recombinant techniques, or chemical precursors or other chemicals when chemically synthesized. Purified compounds arc at least 60%

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PCT/US2013/036827 by weight (dry weight) the compound of interest. Preferably, the preparation is at least 75%, more preferably at least 90%, and most preferably at least 99%·, by weight the compound of interest. For example, a purified compound is one that is at least 90%, 91%, 92%, 93%, 94%, 95%, 98%, 99%, or 100% (w/w) of the desired compound by weight. Purity is measured by any appropriate standard method, for example, by column chromatography, thin layer chromatography, or highperformance liquid chromatography (HPLC) analysis. A purified or isolated polynucleotide (ribonucleic acid (RNA) or deoxyribonucleic acid (DNA)) is free of the genes or sequences that flank it in its naturally-occurring state. Purified also defines a degree of sterility that is safe for administration to a human subject, e.g., lacking infectious or toxic agents. In the case of tumor antigens, the antigen may be purified or a processed preparation such as a tumor cell lysate.

Similarly, by “substantially pure” is meant a nucleotide or polypeptide that has been separated from the components that naturally accompany it. Typically, the nucleotides and polypeptides are substantially pure when they are at least 60%·, 70%, 80%, 90%, 95%, or even 99%, by weight, free from the proteins and naturallyoccuning organic molecules with they are naturally associated.

A small molecule is a compound that is less than 2000 daltons in mass. The molecular mass of the small molecule is preferably less than 1000 daltons, more preferably less than 600 daltons, e.g., the compound is less than 500 daltons, 400 daltons, 300 daltons, 200 daltons, or 100 daltons.

The transitional term “comprising,” which is synonymous with “including,” “containing.” or “characterized by,” is inclusive or open-ended and does not exclude additional, unrecited elements or method steps. By contrast, the transitional phrase “consisting of’ excludes any element, step, or ingredient not specified in the claim. The transitional phrase “consisting essentially of’ limits the scope of a claim to the specified materials or steps “and those that do not materially affect the basic and novel characlerislic(s)” of the claimed invention.

Other features and advantages of the invention will be apparent from the following description of the preferred embodiments thereof, and from the claims. Unless otherwise defined, all technical and scientific terms used herein have the same meaning as commonly understood by one of ordinary skill in the art to which this invention belongs. Although methods and materials similar or equivalent to those described herein can be used in the practice or testing of the present invention, suitable methods and materials are described below.

BRIEF DESCRIPTION OF THE DRAWINGS

Figure I is an SEM image of the MPS rods. The random stacking and self assembly of these rods generate a 3D space that allows for cell infiltration.

Figure 2 is a bar graph showing surface marker expression dependent on MPS rods of different lengths. 100 pg of the MPS rods of different lengths were incubated with bone marrow derived dendritic cells for 18 hour. As a marker of inflammation, the percentage of activated cells was determined by staining for cell surface receptors CD11c (DC marker), MHCI1 (antigen presentation marker) and CD86 (costimulatoiy receptor). The inflammatory property of the rods increased with increasing length. Since a desired scaffold exhibits inflammatory properties (similar to the PLG scaffold control), rods between 30 and 100 pm or 120 pm were used in subsequent experiments.

Figure 3 is a series of images showing the effect of MPS rods in a mouse. Figure 3A is a picture depicting a scaffold injection site excised after 7 days after 5 mg of rhodamine labeled MPS rod was injected subcutaneously into a C57bl/6j mouse. The subcutaneous pocket indicates that the rods were localized and have selfassembled to create a 3D microenvironment. Figure 3B is an SEM image of the excised scaffold site demonstrating cell infiltration into the scaffold site. Figure 3C depicts live/dead imaging of the cells detached from the MPS scaffold, demonstrating the recruitment of living cells.

Figure 4 A is a line graph showing GM-CSF release from MPS rods. I pg of GM-CSF was loaded into the MPS rods and incubated in 0.1%BSA/PBS. Supernatant was collected periodically and measured for GM-CSF using ELISA (R&D). GMCS1^r is being continuously released from the MPS rods. Figure 4B is a bar graph showing surface marker expression in an in vitro bone marrow derived dendritic cell

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PCT/US2013/036827 (BMDC) co-culture with MPS. lOOpg of the unmodified, amine-, thiol-, chloro- and phosphonate- modified MPS rods were incubated with 10⁶/ml BMDCs for 18 hours. The cells were then analyzed for the expression of MHC class-II and the costimulatory molecule CD86. An increased expression of MHCII and CD86 of the BMDCs stimulated by MPS indicates that the MPS rods are inflammatory, and this property was modulated by surface-modifying the MPS rods.

Figure 5A is a bar graph depicting recruitment of CDs by GM-CSF loaded MPS rods. 5 mg/mousc of MPS rods loaded with or without 1 pg/mousc GM-CSF were injected subcutaneously. Cells from the scaffold site were retrieved and stained for the CDllc receptor (DC marker). The MPS scaffold loaded with GM-CSF was capable of recruiting more DCs than the blank MPS scaffold. Figure 5B is a bar graph depicting surface marker expression of DCs. The MPS scaffold loaded with GM-CSF and CpG-ODN activated more DCs than without CpG-ODN.

Figures 6A-B are bar graphs showing (Figure 6A) percentage of B220+ cells or (Figure 6B) total number of B220+ cells at the scaffold site. 5 mg/mouse of MPS rods loaded with or without 1 pg/mouse GM-CSF, 100 pg CpG-ODN and 130 pg ovalbumin were injected subcutaneously. Cells from the scaffold site were retrieved periodically and stained for the B220 receptor (B cell marker). The MPS scaffold loaded with GM-CSF, CpG-ODN and Ova was capable of recruiting more B cells by day 3.

Figures 7A-C are flow cytometry scatterplots (Figure 7A) and bar graphs (Figures 7B-C) depicting the presence of the MHC-I-SIINFEKL (SEQ ID NO:1) marker on the surface of DCs. The MPS scaffold loaded with GM-CSF, CpG-ODN and the model antigen ovalbumin induced the expansion of antigen specific DCs homed to the draining lymph node (dLN). dLN cells are stained with the dendritic marker CD11c and the marker MHC-I-SIINFEKL, which indicates that a part of the ovalbumin protein, the peptide sequence SIINFEKL, is being presented on the surface of the cell in the MHC-I complex.

Figures 8A-B are bar graphs showing formation of the germinal center due to the MPS scaffold. The MPS scaffold loaded with GM-CSF, CpG-ODN and the model antigen ovalbumin was able to induce the germinal center, home to activated and antigen primed B cells, in the dLN. The dLN cells are stained with B220 (B cell marker) and GL7 (germinal center marker) to investigate the formation of the

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PCT/US2013/036827 germinal center, which hosts only B cells that are activated and in the process of somatic hypermutation and isotype switching.

Figures 9A-B are bar graphs depicting that the MPS scaffold loaded with GMCSF, CpG-ODN and the model antigen ovalbumin was able to induce the expansion of CD8⁺ cytotoxic T lymphocytes (CTLs) that can specifically recognize the model antigen. Splenocytes were stained for CD8 (killer T cell marker) and with a MHCItetramer-SIINFEKL antibody, which indicates whether a T cell is able to recognize a specific antigen presented on the MHCI complex.

Figures 10A-C are histograms showing that the MPS scaffold loaded with GM-CSF, CpG-ODN and the model antigen ovalbumin was able to induce the clonal expansion of antigen specific CD8+ CTLs in the dI.N and the spleen. Injected splenocytes from the OT-I mouse were stained the cell tracker dye CFSE, whose fluorescence halves every time a cell divides. The lower fluorescence in the CFSE stained splenocytes in the spleen and the dLN in the fully loaded vaccine group indicates ova-specific CTL proliferation.

Figures 11 A-C are histograms showing that the MPS scaffold loaded with GM-CSF, CpG-ODN and the model antigen ovalbumin was able to induce the clonal expansion of antigen specific CD4+ THs in the dLN and the spleen. Injected splenocytes from the ΟΤ-Π mouse were stained the cell tracker dye CFSE, whose fluorescence halves every time a cell divides. The lower fluorescence in the CFSE stained splenocytes in the spleen and the dLN in the fully loaded vaccine group and the MPS loaded with only the antigen group indicates ova-specific CD4+ TH cell proliferation.

Figures 12 A-B are histograms showing that antibody titer is defined as the degree to which the antibody-serum solution can be diluted and still contain a detectable amount of the antibody. The anti-ovalbumin serum antibodies were titrated. The MPS scaffold loaded with GM-CSF, CpG-ODN and ova elicited a strong and durable TH1 and TH2 antibody response. MPS loaded with OVA alone can elicit a strong ΊΉ2 response, indicating the adjuvant potential of the MPS material itself.

Figures 13 A- B arc line graphs showing that GM-CSF is released from the MPS microparticles in a controlled and sustained manner. A) Ipg of GM-CSF was loaded into 5mg of MPS rods and incubated in 0.1%BSA/PBS. Supernatant was collected periodically and measured for GM-CSF using ELISA (R&D). GM-CSF was continuously released from the MPS rods, although in small quantities. B) Ipg of

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GM-CSF was loaded into 5mg of MPS containing OVA and CpG. It was then injected subcutaneously into C57BL/6j mice. At various time points, the tissue surrounding the injected particle scaffold was harvested and analyzed for GM-CSF level. The level of GM-CSF was maintained throughout a week.

Figures 14 A-B are photographs, and Figure 14C is a bar graph. Higher aspect ratio MPS microparticles recruit more cells. Figure 14A shows SEM images of MPS microparticles either between 10pm and 20 pm or between 80pm and 120pm in length. The longer rods resulted in a composition with greater area or space between the rods. Figure 14B shows MPS compositions that was harvested from mice. 5pg of MPS microparticles were injected subcutaneously into mice, and the scaffold site was harvested on day 7 post injection. Figure 14 C is a bar graph showing enumeration of cells that were isolated from the scaffold. MPS microparticles of higher aspect ratio recruited more cells.

Figures 15 A- B are bar graphs. Dendritic cells (DCs) are recruited to the MPS microparticle as a response to GM-CSF. MPS microparticles were loaded with GMCSF (Ong, 500ng, 1000ng, 3000ng) and injected subcutaneously into mice. On day 7 post injection, the scaffold was harvested and analyzed using flow cytometry. Figure 15A shows that recruited CD1 lc+ CD1 lb+ DCs increases with increasing GM-CSF dose. Fig. 15B shows that recruited mature CDllc+ MHCH+ DCs also DCs increases with increasing GM-CSF dose.

Figure 16 is a bar graph showing that GM-CSF increases recruited DC trafficking to the draining LN. MPS microparticles were loaded with Alexa 647 labeled ovalbumin (OVA), or Alexa 647 labeled OVA with Ipg GM-CSF, and injected subcutaneously into mice. On day 7 post injection, the draining lymph node (dLN) was harvested and analyzed using flow cytometiy. With the addition of antigen (OVA), there is a modest increase of Alexa 647+ CD1 lc+ DCs that have trafficked to the scaffold and up-taken the OVA. However, the addition of GM-CSF drastically increases DC trafficking from the scaffold to the dLN.

Figures 17 A-C are scatteiplots and Figure 17D is a bar graph. Ijocal deliveiy of CpG-ODN from the MPS microparticle scaffold increases circulation of activated DCs. MPS microparticles were loaded with Igg of GM-CSF, 300pg of OVA and lOOgg of CpG-ODN. They were then injected subcutaneously into mice. The dLNs were harvested and analyzed after 7 days post injection. LN cells were stained with CDllc and CD86. The addition of CpG-ODN, which is locally released from the

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MPS scaffold, further increases the percentage and number of activated, mature DCs in the dLN.

Figures 18 A-C are photographs and Figure 18 D is a bar graph. Proteins are released from the MPS microparticle scaffold in a controlled and sustained manner. Alexa 647 labeled ovalbumin was injected subcutaneously into the flank of a mouse either in a buffer solution or loaded onto the MPS microparticles. Relative fluorescence was measured using the IVIS at various time points. If injected in a buffer solution, the protein diffuses away from the injection site in less than 1 day. However, if loaded onto the MPS microparticles, the protein is released from the local scaffold site in a sustained manner, e.g., over the course of a week (2, 3,4,5, 7 or more days).

Figures 19 A-B are line graphs showing antibody titers. Antibody titer is defined as the degree to which the antibody-serum solution can be diluted and still contain a detectable amount of the antibody. Mice were vaccinated with 300pg OVA, lOOpg CpG-ODN and Ipg GM-CSF in the soluble form or loaded in 5mg of MPS microparticles. The anti-ovalbumin serum antibodies are titrated. The MPS scaffold loaded with GM-CSF, CpG-ODN and ova can elicit a strong and durable TH1 and TH2 antibody response, as indicated by a high titer of the IgG2a and IgGl antibody, respectively. More impressively, this response is evident beyond 200 days after vaccination with a single injection. This response was compared to OVA delivered using aluminum hydroxide, the only adjuvant approved for human use in the US. While the MPS vaccine is capable of inducing both TH1 and TH2 antibody responses, due to its capability to load small cytokines, proteins and DNAs, the response induced by alum is completely TH2 biased. The MPS vaccine is very versatile and is readily fine tuned and controlled to induce specific immune responses.

Figures 20 Λ-D are scatterplots showing that vaccination with the MPS vaccine induces the expansion of T follicular helper cells. OT-II splenocytes were stained with CFSE and adoptively transferred into Thy 1.1+ recipient mice. The recipient mice were then vaccinated with MPS and lysozyme, MPS and OVA, and the full form of the vaccine containing GM-CSF and CpG. Three days after vaccination, dLN were harvested and the adoptively transferred cells were analyzed. It is shown here that mice that were vaccinated with MPS and ova, and the full form of the vaccine, generated a strong population of follicular T helper cells, which are the cells

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PCT/US2013/036827 directly responsible for “helping B cells to differentiate and mature into full, functional antigen specific antibody secreting plasma cells.

Figures 21 A-D are line graphs showing that vaccination with the MPS vaccine induces the clonal expansion of CD4+ T helper cells. OT-II splenocytes were stained with CFSE and adoptively transferred into Thy 1.1+ recipient mice. The recipient mice were then vaccinated with MPS and lysozyme, MPS and OVA, and the full form of the vaccine containing GM-CSF and CpG. Three days after vaccination, dLN were harvested and the adoptively transferred cells were analyzed. It is shown here that both MPS and OVA, and the full vaccine, induced strong clonal expansion of the CD4+ T helper cells, indicating a systemic antigen specific response.

Figure 22 A-B are line graphs showing that glycolic acid and lactic acid modification of the MPS microparticles aids the release of bioactive GM-CSF. Igg of GM-CSF was loaded into 5mg of glycolic acid or lactic acid modified MPS rods and incubated in 0.1%BSA/PBS. Supernatant was collected periodically and measured for GM-CSF using ELISA (R&D). Compared to GM-CSF released from unmodified MPS microparticles, glycolic acid and lactic acid modification increasecumulative release of bioactive GM-CSF by more than 20 fold.

Figures 23 A-D are scatterplots showing that glycolic acid modified MPS increases the percentage of recruited DCs and mature DCs. 5mg of unmodified or glycolic acid modified MPS microparticles were loaded with Ipg of GM-CSF for 1 hour at 37C, and injected subcutaneously into mice. The scaffold was harvested at day 7 and analyzed. It is evident here that the modified MPS almost doubles the percentage of recruited CD1 lc+ CD1 lb+ DCs, and more drastically increases the percentage of CD1 lc+ CD86+ mature DCs. These results indicate that the great surface modification potential of the MPS microparticles permit further manipulation of the phenotype of recruited cells to induce more potent immune responses.

DETAILED DESCRIPTION

Injectable MPS-based micro-rods randomly self-assemble to form 3D scaffold in vivo. This system is designed such that it releases a cytokine to recruit and transiently house immune cells, present them with an antigen, and activate them with a danger signal. After recruitment and temporary housing or presence of the cells in the structure, these immune cells migrate out of the device structure and honied to a lymph node. Ihus, the composition is one in which cells traffic/circulatc in and out

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PCT/US2013/036827 of, their status of immune activation being altered/modulated as a result of the trafficking through the device..

A markedly expanded population of antigen specific dendritic cells was found in the lymph node as well as the formation of the germinal center, which is aided by the involvement of follicular T helper cells in the lymph node as a result of the administration of the device. A population of antigen-recognizing CD8+ CTLs in the spleen was also found to be significantly enhanced. The system also induces the clonal expansion of both antigen specific CD4 and CD8 T cells. In addition to the significant amplification of the cellular immune response, a high and durable antibody production and a balanced Th1/Th2 response was detected.

Key elements of the injectable mesoporous silica micro-rod based scaffold system for modulating immune cell trafficking and reprogramming include:

• Aspect ratio of the MPS micro rods ( 10 nm cross sectional area by 100 micron length) prevents their uptake and therefore allows for local formation of a 3D structure.

• 8 nm pore size allows for adsorption of small molecules that can be delivered via diffusion in a controlled and continuous manner.

• High surface area to volume ratio allows for the control of the loading of various cytokines, danger signal and antigen.

• Inflammatory property of the MPS micro rods promotes immune cell recruitment without the need of other inflammatory cytokines.

• Versatility in ability of surface chemical modification of the MPS rods that modulate properties of the rods and ways that proteins are bound to the rods.

• Controlled release of GM-CSF can modulate the trafficking of immune cells to the site of the scaffold.

• Controlled release of CpG-ODN activates the recruited dendritic cells.

• Anchored protein antigens are taken up by the recruited immune cells at the site of the scaffold.

A pore size of approximately 5-10, e.g., 8 nm, was found to be optimal for loading efficiency for small molecules as well as larger proteins, e.g., GM-CSF (which molecule is about 3 nm in diameter).

Upon subcutaneous injection of the micro rods suspended in a buffer, the rods randomly stack into a 3D structure; the ends of the rods form physical contact with each other, and a micro space is formed between the contacts.

MPS

Mesoporous silica nanoparticles are synthesized by reacting tetraethyl orthosilicate with a template made of micellar rods. The result is a collection of nanosized spheres or rods that are filled with a regular arrangement of pores. The template can then be removed by washing with a solvent adjusted to the proper pH. in another technique, the mesoporous particle could be synthesized using a simple sol-gel method or a spray drying method. Tetraethyl orthosilicate is also used with an additional polymer monomer (as a template). Other methods include those described in U.S. Patent Publication 20120264599 and 20120256336.

Granulocyte Macronhaec Colony Stimulating Factor (GMCSF)

Granulocyte-macrophage colony-stimulating factor (GM-CSF) is a protein secreted by macrophages, T cells, mast cells, endothelial cells and fibroblasts. Specifically, GM-CSF is a cytokine that functions as a white blood cell growth factor. GM-CSF stimulates stem cells to produce granulocytes and monocytes. Monocytes exit the blood stream, migrate into tissue, and subsequently mature into macrophages.

Scaffold devices described herein comprise and release GM-CSF polypeptides to attract host DCs to the device. Contemplated GM CSF polypeptides are isolated from endogenous sources or synthesized in vivo or in vitro. Endogenous GM-CSF polypeptides are isolated from healthy human tissue. Synthetic GM-CSF polypeptides are synthesized in vivo following transfection or transformation of template DNA into a host organism or cell, e.g. a mammal or cultured human cell line. Alternatively, synthetic GM-CSF polypeptides are synthesized in vitro by polymerase chain reaction (PCR) or other art-recognized methods Sambrook, J., Fritsch, E.F., and Maniatis, T.. Molecular Cloning: A laboratory Manual. Cold Spring Harbor Laboratory Press, NY, Vol 1,2, 3 (1989).

GM-CSF polypeptides are modified to increase protein stability in vivo. Alternatively, GM-CSF polypeptides are engineered to be more or less immunogenic. Endogenous mature human GM-CSF polypeptides arc glycosylated, reportedly, at amino acid residues 23 (leucine), 27 (asparagine), and 39 (glutamic acid) (see US Patent No. 5,073,627). GM-CSF polypeptides of the present invention are modified at one or more of these amino acid residues with respect to glycosylation state.

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GM-CSF polypeptides are recombinant. Alternatively GM-CSF polypeptides are humanized derivatives of mammalian GM-CSF polypeptides. Exemplary mammalian species from which GM-CSF polypeptides are derived include, but are not limited to, mouse, rat, hamster, guinea pig, ferret, cat, dog, monkey, or primate. In a preferred embodiment, GM-CSF is a recombinant human protein (PeproTech, Catalog # 300-03). Alternatively, GM-CSF is a recombinant murine (mouse) protein (PeproTech, Catalog #315-03). Finally, GM-CSF is a humanized derivative of a recombinant mouse protein.

Human Recombinant GM-CSF (PeproTech, Catalog # 300-03) is encoded by the following polypeptide sequence (SEQ ID NO:2):

MAPARSPSPS TQPWEHVNAI QEARRLLNLS RDTAAEMNET VEVISEMFDL QEPTCLQTRL ELYKQGLRGS LTKLKGPLTM MASIIYKQIICP PTPETSCATQIITFESFKEN LKDFLLVIPF DCWEPVQE

Murine Recombinant GM-CSF (PeproTech, Catalog # 315-03) is encoded by the following polypeptide sequence (SEQ ID NO: 3):

MAPTRSPITV TRPWKHVEAI KEALNLLDDM PVTLNEEVEV VSNEFSFKKL TCVQTRLKIF EQGLRGNFTK LKGALNMTAS YYQTYCPPTP ETDCETQVIT YADFIDSLKT FLTDIPFECK KPVQK

Human Endogenous GM-CSF is encoded by the following mRNA sequence (NCBI Accession No. NM_0(X)758 and SEQ ID NO: 4):

acacagagag aaaggctaaa gttctctgga ggatgtggct gcagagcctg etgetettgg gcactgtggc ctgcagcatc tctgcacccg cccgctcgcc cagccccagc acgcagccct

121 gggagcatgt gaatgccatc caggaggccc ggcgtctcct gaacctgagt agagacactg

181 etgetgagat gaacgaaaca gtagaagtea tctcagaaat gtttgacctc caggagccga

241 cctgcctaca gacccgcctg gagctgtaca agcagggcct gcggggcagc ctcaccaagc

301 tcaagggccc cttgaccatg atggccagcc actacaagca gcactgccct ccaaccccgg

361 aaacttcctg tgcaacccag attatcacct ttgaaagttt caaagagaac ctgaaggact

421 ttctgcttgt catccccttt gactgctggg agccagtcca ggagtgagac cggccagatg

481 aggctggcca agccggggag ctgctctctc atgaaacaag agctagaaac tcaggatggt

541 catcttggag ggaccaaggg gtgggccaca gccatggtgg gagtggcctg gacc-gccct

601 gggccacact gaccctgata caggcatggc agaagaatgg gaatatttta tactgacaga

661 aatcagtaat atttatatat ttatattttt aaaatattta tttatttatt tattraagtt

721 catattccat atttattcaa gatgttttac cgtaataatt attattaaaa atatgettet a

Human Endogenous GM-CSF is encoded by the following amino acid sequence (NCBI Accession No. NP_000749.2 and SEQ ID NO: 5): MWLQSLLLLGTVACSISAPARSPSPSTQPWEHVNAIQEARRLLNLSRDTAAEM NETVEVISEMFDLQEPTCLQTRLELYKQGLRGSLTKLKGPL'I MM ASH YKQHC PPTPETSC ATQIITFESFKENI KDFI J .VIPFDCWEPVQE

Cytosine-Guanosine (CpG) Oligonucleotide (CpG-ODN) Sequences

CpG sites are regions of deoxyribonucleic acid (DNA) where a cysteine nucleotide occurs next to a guanine nucleotide in the linear sequence of bases along its length (the “p” represents the phosphate linkage between them and distinguishes them from a cytosine-guanine complementary base pairing). CpG sites play a pivotal role in DNA methylation, which is one of several endogenous mechanisms cells use to silence gene expression. Methylation of CpG sites within promoter elements can lead to gene silencing. In the case of cancer, it is known that tumor suppressor genes are often silenced while oncogenes, or cancer-inducing genes, are expressed. CpG sites in the promoter regions of tumor suppressor genes (which prevent cancer formation) have been shown to be methylated while CpG sites in the promoter regions of oncogenes are hypomethylated or unmethylated in certain cancers. The TLR-9 receptor binds unmcthylatcd CpG sites in DNA.

The vaccine composition described herein comprises CpG oligonucleotides.

CpG oligonucleotides are isolated from endogenous sources or synthesized in vivo or in vitro. Exemplary sources of endogenous CpG oligonucleotides include, but are not limited to, microorganisms, bacteria, fungi, protozoa, viruses, molds, or parasites. Alternatively, endogenous CpG oligonucleotides are isolated from mammalian benign or malignant neoplastic tumors. Synthetic CpG oligonucleotides are synthesized in vivo following transfection or transformation of template DNA into a host organism. Alternatively, Synthetic CpG oligonucleotides are synthesized in vitro by polymerase chain reaction (PCR) or other art-recognized methods (Sambrook, J., Fritsch, E.F., and Maniatis, T., Molecular Cloning: A Laboratory Manual. Cold Spring Harbor Laboratory Press, NY, Vol. 1,2,3 (1989).

CpG oligonucleotides are presented for cellular uptake by dendritic cells. For example, naked CpG oligonucleotides are used. The term “naked” is used to describe an isolated endogenous or synthetic polynucleotide (or oligonucleotide) that is free of additional substituents. In another embodiment, CpG oligonucleotides are bound to one or more compounds to increase the efficiency of cellular uptake. Alternatively, or in addition, CpG oligonucleotides arc bound to one or more compounds to increase the stability of the oligonucleotide within the scaffold and/or dendritic cell. CpG oligonucleotides are optionally condensed prior to cellular uptake. For example, CpG oligonucleotides are condensed using polyethylimine (PEI), a cationic polymer that increases the efficiency of cellular uptake into dendritic cells.

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CpG oligonucleotides can be divided into multiple classes. For example, exemplary CpG-ODNs encompassed by compositions, methods and devices of the present invention are stimulatory, neutral, or suppressive. The term “stimulatory” describes a class of CpG-ODN sequences that activate TLR9. The term “neutral” describes a class of CpG-ODN sequences that do not activate TLR9. The term “suppressive” describes a class of CpG-ODN sequences that inhibit TLR9. The term “activate TLR9” describes a process by which TLR9 initiates intracellular signaling.

Stimulatory CpG-ODNs can further be divided into three types A, B and C, which differ in their immune-stimulatory activities. Type A stimulatory CpG ODNs are characterized by a phosphodiester central CpG-containing palindromic motif and a phosphorothioate 3’ poly-G string. Following activation of TLR9, these CpG ODNs induce high IFN-α production from plasmacytoid dendritic cells (pDC). Type A CpG ODNs weakly stimulate TLR9-dependent NF-κΒ signaling.

Type B stimulatory CpG ODNs contain a full phosphorothioate backbone with one or more CpG dinucleotides. Following TLR9 activation, these CpG-ODNs strongly activate B cells. In contrast to Type A CpG-ODNs, Type B CpG-ODNS weakly stimulate IFN-α secretion.

Type C stimulatory CpG ODNs comprise features of Types A and B. Type C CpG-ODNs contain a complete phosphorothioate backbone and a CpG containing palindromic motif. Similar to Type A CpG ODNs, Type C CpG ODNs induce strong IFN-α production from pDC. Simlar to Type B CpG ODNs, Type C CpG ODNs induce strong B cell stimulation.

Exemplary stimulatory CpG ODNs comprise, but are not limited to, ODN 1585, ODN 1668, ODN 1826, ODN 2006, ODN 2006-G5, ODN 2216, ODN 2336, ODN 2395, ODN M362 (all InvivoGen). The present invention also encompasses any humanized version of the preceding CpG ODNs. In one preferred embodiment, compositions, methods, and devices of the present invention comprise ODN 1826 (the sequence of which from 5’ to 3’ is tccatgacgttcctgacgtt, wherein CpG elements are bolded, SEQ ID NO: 10).

Neutral, or control, CpG ODNs that do not stimulate TLR9 are encompassed by the present invention. These ODNs comprise the same sequence as their stimulatory counterparts but contain GpC dinucleotides in place of CpG dinucleotides.

Exemplary neutral, or control, CpG ODNs encompassed by the present invention comprise, but are not limited to, ODN 1585 control, ODN 1668 control, ODN 1826 control, ODN 2006 control, ODN 2216 control, ODN 2336 control, ODN 2395 control, ODN M362 control (all InvivoGen). The present invention also encompasses any humanized version of the preceding CpG ODNs.

Antigens

Compositions, methods, and devices described herein comprise tumor antigens or other antigens. Antigens elicit protective immunity or generate a therapeutic immune response in a subject to whom such a device was administered. Preferred tumor antigens are tumor cel] lysates (see, e.g., Ali et. AL. 2009, Nature Materials 8, 151-158). For example, a whole tumor or tumor biopsy sample is extracted from a human patient (or non-human animal), and digested using collagenase to degrade the extra cellular matrix. Then the tumor cells then undergo three cycles of the freeze thaw process, in which the cells are frozen in liquid N₂ and then thawed in a water bath. This process generates the tumor antigens, which are then loaded onto the MPS particles at the same time with GM-CSF and CpG ODN. For example, a vaccine dose of tumor cell lysate antigen is the amount obtained from 1 x 10⁶ tumor cells. After fabrication of the MPS particles, the particles are suspended in a physiologically accepted buffer, e.g., PBS, and the recruitment compound (e.g., GM-CSF), activating compound (e.g., CpG), and antigen added to the suspension of rods. The mixture is shaken at room temperature overnight and then lyophilized for about 4 hours. Prior to administration, the rods are again suspended in buffer and the suspension loaded into a 1 ml syringe (18 gauge needle). A typical vaccine dose is 150 μΐ of the mixture per injection.

Exemplary cancer antigens encompassed by the compositions, methods, and devices of the present invention include, but are not limited to, tumor lysates extracted from biopsies, irradiated tumor cells, MAGE series of antigens (MAGE-1 is an example), MART-l/nielana, tyrosinase, ganglioside, gplOO, GD-2,0-acety]ated GD· 3, GM-2, MUC-1, Sosl, Protein kinase C-binding protein, Reverse transcriptase protein, AKAI’ protein, VRK1, KIAA1735, T7-1, T11-3, Tll-9, Homo Sapiens telomerase ferment (hTRT), Cytokeratin-19 (CYFRA21-1), SQUAMOUS CELL CARCINOMA ANTIGEN 1 (SCCA-1), (PROTEIN T4-A). SQUAMOUS CELL CARCINOMA ANTIGEN 2 (SCCA-2), Ovarian carcinoma antigen CA125 (1Λ1-3Β)

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MUCIN),(PEM),(PEMT).(EPISIALIN), (TUMOR-ASSOCIATED EPITHELIAL MEMBRANE ANTIGEN),(EMA),(H23AG), (PEANUT-REACTIVE URINARY MUCIN), (PUM), (BREAST CARCINOMA- ASSOCIATED ANTIGEN DF3), CTCL tumor antigen sel-1, CTCL tumor antigen sel4-3, CTCL tumor antigen se204, CTCL tumor antigen se20-9, CTCL tumor antigen se33-l, CTCL tumor antigen sc37-2, C I CL tumor antigen sc57-L CTCL tumor antigen sc89-l, Prostate-specific membrane antigen, 5T4 oncofetal trophoblast glycoprotein, Orf73 Kaposi’s sarcomaassociated herpesvirus, MAGE-CI (cancer/testis antigen CT7), MAGE-B1 ANTIGEN (MAGE-XP ANTIGEN) (DAM10), MAGE-B2 ANTIGEN (DAM6), MAGE-2 ANTIGEN, MAGE-4a antigen, MAGE-4b antigen. Colon cancer antigen NY-CO-45, Lung cancer antigen NY-LU-12 variant A, Cancer associated surface antigen. Adenocarcinoma antigen ART1, Paraneoplastic associated brain-testis-cancer antigen (onconeuronal antigen MA2; paraneoplastic neuronal antigen), Neurooncological ventral antigen 2 (NOVA2), Hepatocellular carcinoma antigen gene 520, TUMOR-ASSOCIATED ANTIGEN CO-029, Tumor-associated antigen MAGE-X2, Synovial sarcoma, X breakpoint 2, Squamous cell carcinoma antigen recognized by T cell, Serologically defined colon cancer antigen 1, Serologically defined breast cancer antigen NY-BR-15, Serologically defined breast cancer antigen NY-BR-16, Chromogranin A; parathyroid secretory protein 1, DUPAN-2, CA 19-9, CA 72-4, CA 195, Carcinoembryonic antigen (CEA). Purified tumor antigens are used alone or in combination with one another.

The system is also useful to generate an immune response to other antigens such as microbial pathogens (e.g., bacteria, viruses, fungi).

The following materials and methods were used to generate the data described herein.

MPS scaffold fabrication

The Pluronic P-123 (Sigma-Aldrich) surfactant was dissolved in 1.6M HC1 at room temperature, and heated 40 degrees C. 42 mmol of Tetraethyl orthosilicatc (TEOS) (Sigma-Aldrich) was added and heated for 20 hours at 40 degrees C under stirring (600 rpm). The composition was then heated to 100 degrees C for 24 hours. The rod particles were collected by filtration and air dried at room temperature. The particles were extracted in cthanol/HCl (5 parts HC1 to 500 parts EtOH) overnight at

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For full vaccine composition, 1 pg/mouse GM-CSF, 100 pg/mouse CpGODN and 130 pg/mousc of the ovalbumin protein were incubated with 5 mg/mousc MPS in dHjO for 12 hours, lyophilized for 12 hours, resuspended in 150 pl/mouse PBS and injected subcutaneously using a 18G needle.

To determine the release kinetics of GM-CSF, and CpG-ODN from the MPS rods, radioactive I-labeled recombinant human GM-CSF was used as a tracer, and standard release studies were carried out. Similarly, the amount of CpG-ODN released into PBS was determined by the absorbance readings using a Nanodrop instrument (ND1000, Nanodrop Technologies).

Modification of MPS microparticles

Standard l-ethyl-3-(3-dimethylaminopropyl)carbodiimide (EDC) chemistry is used to activate a carboxylic acid on glycolic acid or lactic acid. The MPS particles are amine modified using amine propyl silane. The two components are then mixed together at room temperature overnight to react. The particles are then allowed to air diy. The resulting glycolic acid and/or lactic acid modified particles are then contacted with GM-CSF or other compounds as described above.

In vitro DC activation assay

Murine Dendritic Cells (DCs) were differentiated from the bone marrow cells using 20 ng/ml GM-CSF. Differentiated DCs, at 10⁶/ml, were incubated with 100 pg/ml of the MPS particles for 18 hours, and analyzed for the expression of CD 11c (ebiosciences, San Diego, CA), CD86 (ebiosciences, San Diego, CA ) and MHC class-Π (ebiosciences, San Diego, CA) using flow cytometry.

Analysis of DC recruitment to MPS scaffold and emigration to lymph nodes 'Hie MPS scaffold was retrieved from the animal and digested by mechanically separating the cells from the rods. APC conjugated CD11c (dendritic cell marker), FITC conjugated MHC class-Π, and PE conjugated CD86 (B7, costimulatory molecule) stains were used for DC and leukocyte recruitment analysis. Cells were gated according to positive fluorescein isothiocyanate (FITC),

AJJophycocyanin (APC) and phycoerythrin (PE) using isotype controls, and the percentage of cells staining positive for each surface antigen was recorded.

To determine the presence of antigen specific DCs in the lymph nodes, the draining lymph node (dLN) was harvested and analyzed using APC conjugated CDllc and PE conjugated SIINFEKL-MHC class 1 (ebioscienccs, San Diego, CA). Analysis of antigen specific CD8+ spleen T cells

The spleen was harvested and digested. After lysing the red blood cells, the splenocytes were analyzed using PE-CY7 conjugated CD3 (ebiosciences, San Diego, CA), APC conjugated CD8 (ebiosciences, San Diego, CA) and the PE conjugated SIINFEKL (SEQ ID NO: ) MHC class ! tetramer (Beckman Coulter). SIINFEKL is an ovalbumin derived peptide [OVA(257-264)].

Analysis of CD4+ or CD8+ T cell clonal expansion

The spleens from the OT-II (for CD4) or Oi l (for CD8) transgenic C57bl/6 mice (Jackson Laboratories) were harvested, digested, pooled and stained with the cell tracer Carboxyfluorescein succinimidyl ester (CFSE). 20xl0⁶ stained splenocytes/mouse were IV injected into the C57bl/6 (Jackson Laboratories) mice two days post immunization. The dLNs and spleens were retrieved after four days post IV injection and analyzed using PE conjugated CD8 or CD4 marker.

Characterization of anti-QVA humoral response

Blood sera were analyzed for IgGl, and IgG2a antibodies by ELISA using ovalbumin-coated plates. Antibody titration was defined as the lowest serum dilution at which the ELISA 01) reading is >0.3 (blank).

OTHER EMBODIMENTS

While the invention has been described in conjunction with the detailed description thereof, the foregoing description is intended to illustrate and not limit the scope of the invention, which is defined by the scope of the appended claims. Other aspects, advantages, and modifications are within the scope of the following claims.

The patent and scientific literature referred io herein establishes the knowledge that is available to those with skill in the art.

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While this invention has been particularly shown and described with references to preferred embodiments thereof, it will be understood by those skilled in 5 the an that various changes in form and details may be made therein without departing from the scope of the invention encompassed by die appended claims.

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