WO2018009894A1

Programmed death 1 ligand 1 (pd-l1) binding proteins and methods of use thereof

Abstract

The present disclosure provides proteins, such as antibodies, that include an antigen binding portion that specifically binds to Programmed Death 1 Ligand 1 (PD-L1). Also provided are nucleic acids encoding the proteins, and cells (e.g., genetically modified cytotoxic lymphocytes) that include such nucleic acids. In some embodiments, a subject method includes reducing the interaction between PD-L1 on a first-cell and PD-1 on a second cell. In some cases, the contacting is in vivo. For example, the methods and compositions provided can be used in the treatment of viral infection and cancer, such as the treatment of solid tumors via ACT or via administration of a subject protein that specifically binds to PD-L1.

WO2018009894A1, drawing sheet 1
Sheet 1 of 35

Term

No projected expiry on record.

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87 claims: 28 independent, 59 dependent

  1. 1
    CLAIMSWhat Is Claimed Is:1. A protein that specifically binds to PD-L1 and comprises an antigen binding portion that comprises: (a) a first polypeptide comprising the 3 CDR amino acid sequences set forth in SEQ ID NOs:2-4, and a second polypeptide comprising the 3 CDR amino acid sequences set forth in SEQ ID NOs: 6-8;or (b) a first polypeptide comprising the 3 CDR amino acid sequences set forth in SEQ ID NOs: 10-12, and a second polypeptide comprising the 3 CDR amino acid sequences set forth in SEQ ID NOs: 14-16, with the exception that each of the three CDR amino acid sequences of the first and/or second polypeptide comprises two or less conservative amino acid substitutions relative to the specified SEQ ID number.
  2. 6
    The protein of any of claims 1-5, wherein the first polypeptide is a light chain, and the second polypeptide is a heavy chain.
  3. 7
    The protein of any of claims 1-6, wherein the protein is a single-chain antibody (scFv) and the first and second polypeptides are fused directly or via a linker to one another.
  4. 9
    The protein of any of claims 1-8, wherein the protein is a maxibody comprising an immunoglobulin Fc domain fused directly or via a linker to the antigen binding portion.
  5. 13
    The protein of any of claims 1-6, wherein the protein is a humanized antibody.
  6. 14
    A nucleic acid comprising a nucleotide sequence encoding the protein of any one of claims 1-13.
  7. 18
    A cell comprising the nucleic acid of any one of claims 14-17.
  8. 29
    The cell of claim of any of claims 20-28, wherein the cytotoxic lymphocyte exhibits an increased level of expression of one or more activation antigens relative to a naive T-cell.
  9. 32
    A method comprising:genetically modifying a cytotoxic lymphocyte isolated from a tumor of a subject by introducing into the cytotoxic lymphocyte the nucleic acid of any of claims 14-17, wherein the genetically modified cytotoxic lymphocyte expresses and secretes the protein that specifically binds to PD-L1 ;expanding the genetically modified cytotoxic lymphocyte to generate a population of genetically modified cytotoxic lymphocytes;and administering the population of genetically modified cytotoxic lymphocytes to the subject to treat the tumor.
  10. 35
    The method of any one of claims 32-34, wherein the nucleic acid integrates into the cytotoxic lymphocyte's genome.
  11. 36
    The method of any one of claims 32-35, wherein the cytotoxic lymphocyte is a T- cell.
  12. 39
    The method of any one of claims 32-35, wherein the cytotoxic lymphocyte is a natural killer (NK) cell.
  13. 40
    The method of any one of claims 32-39, wherein the genetically modified cytotoxic lymphocyte comprises a receptor specific for an antigen from the tumor.
  14. 41
    The method of any one of claims 32-40, comprising isolating the cytotoxic lymphocyte from the subject prior to the genetically modifying.
  15. 42
    The method of any one of claims 32-41, wherein said protein that specifically binds to PD-L1 and comprises an antigen binding portion that comprises:(a) a first polypeptide comprising the 3 CDR amino acid sequences set forth in SEQ ID NOs:2-4, and a second polypeptide comprising the 3 CDR amino acid sequences set forth in SEQ ID NOs: 6-8;or (b) a first polypeptide comprising the 3 CDR amino acid sequences set forth in SEQ ID NOs: 10-12, and a second polypeptide comprising the 3 CDR amino acid sequences set forth in SEQ ID NOs: 14-16, with the exception that each of the three CDR amino acid sequences of the first and/or second polypeptide comprises two or less conservative amino acid substitutions relative to the specified SEQ ID number.
  16. 47
    The method of any of claims 42-46, wherein the first polypeptide is a light chain, and the second polypeptide is a heavy chain.
  17. 48
    The method of any of claims 42-47, wherein the protein is a single-chain antibody (scFv) and the first and second polypeptides are fused directly or via a linker to one another.
  18. 50
    The method of any of claims 42-49, wherein the protein is a maxibody comprising an immunoglobulin Fc domain fused directly or via a linker to the antigen binding portion.
  19. 53
    A method of making a genetically modified cytotoxic lymphocyte, the method comprising:genetically modifying a cytotoxic lymphocyte isolated from a subject having or suspected of having cancer by introducing into the cytotoxic lymphocyte the nucleic acid of any of claims 14-17, wherein the genetically modified cytotoxic lymphocyte expresses and secretes the protein that specifically binds to PD-L1.
  20. 56
    The method of any one of claims 53-55, comprising expanding the cytotoxic lymphocyte in vitro to provide an expanded population of genetically modified cytotoxic lymphocytes.
  21. 57
    The method of any one of claims 53-56, comprising isolating the cytotoxic lymphocyte from the subject prior to the genetically modifying.
  22. 59
    The method of any one of claims 57, wherein the isolating comprises isolating the cytotoxic lymphocyte from peripheral blood of the subject.
  23. 60
    The method of any one of claims 53-59, wherein the cytotoxic lymphocyte is a T- cell.
  24. 63
    The method of any one of claims 53-59, wherein the cytotoxic lymphocyte is a natural killer (NK) cell.
  25. 64
    The method of any one of claims 53-63, wherein the nucleic acid integrates into the cytotoxic lymphocyte's genome.
  26. 65
    The method of any one of claims 53-64, wherein the cytotoxic lymphocyte exhibits an increased level of expression of one or more activation antigens relative to a naive T-cell.
  27. 68
    A method of treating an individual who has or is suspected of having cancer, the method comprising:administering the protein that specifically binds to PD-L1 according to any of claims 1 -13 to the individual.
  28. 74
    The method of any one of claims 70-73, wherein the cytotoxic lymphocyte is a T- cell.
  29. 77
    The method of any one of claims 70-73, wherein the cytotoxic lymphocyte is a natural killer (NK) cell.
  30. 78
    The method of any one of claims 70-77, wherein the cytotoxic lymphocyte exhibits an increased level of expression of one or more activation antigens relative to a naive T-cell.
  31. 81
    A method of reducing the interaction between PD-L1 on a first-cell and PD-1 on a second cell, the method comprising:contacting PD-L1 on the first-cell with the protein of any one of claims 1-13.
  32. 86
    The method of any of claims 81 -85, wherein the individual has cancer.
  33. 87
    The method of claim 87, wherein the individual has a solid tumor.
Independent claims33