WO2016166360A1

Bispecific antibody constructs for cdh3 and cd3

Abstract

The present invention relates to a bispecific antibody construct comprising a first human binding domain which binds to human CDH3 on the surface of a target cell and a second binding domain which binds to human CDS on the surface of a T cell. Moreover, the invention provides a polynucleotide encoding the antibody construct, a vector comprising said polynucleotide and a host cell transformed or transiected with said polynucleotide or vector. Furthermore, the invention provides a process for the production of the antibody construct of the invention, a medical use of said antibody construct and a kit comprising said antibody construct.

WO2016166360A1, drawing sheet 1
Sheet 1 of 152

Term

No projected expiry on record.

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  2. Filed
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  4. Today

1 claim: 1 independent, 0 dependent

  1. 1
    Claims A bispecific antibody construct comprising a first human binding domain which binds to an epitope cluster of human CDH3 on the surface of a target cell and comprising a second binding domain which binds to human CD3 on the surface of a T cell, wherein the epitope cluster of human CDH3 is comprised within amino acid positions 291-363 (SEQ ID NO:36) of human CDH3. The antibody construct according to claim 1 , wherein the first binding domain binds to an epitope which is comprised within amino acid positions 291-327 (SEQ ID NO: 34) of human CDH3. The antibody construct according to claim 1 , wherein the first binding domain binds to an epitope which is comprised within amino acid positions 328-363 (SEQ ID NO: 35) of human CDH3. The antibody construct according to claim 3, wherein the first binding domain also binds to an epitope which is comprised within amino acid positions 404-440 (SEQ ID NO: 390) of human CDH3. The antibody construct according to any one of the preceding claims, wherein the first binding domain also binds to macaque CDH3, preferably to Macaca fascicularis CDH3. The antibody construct according to any one of claims 1, 2 and 5, wherein the first binding domain comprises a VH region comprising CDR-Hl, DR-H2 and CDR-H3 and a VL region comprising CDR-L1, CDR-L2 and DR-L3 selected from the group consisting of: a) CDR-Hl as depicted in SEQ ID NO: 149, CDR-H2 as depicted in SEQ I D NO: 150, CDR-H3 as depicted in SEQ ID NO: 151, CDR-L1 as depicted in SEQ ID NO: 152, CDR-L2 as depicted in SEQ ID NO: 153 and CDR-L3 as depicted in SEQ ID NO: 154;b) CDR-Hl as depicted in SEQ ID NO: 159, CDR-H2 as depicted in SEQ ID NO: 160, CDR-H3 as depicted in SEQ ID NO: 161, CDR-L1 as depicted in SEQ ID NO: 162, CDR-L2 as depicted in SEQ ID NO: 163 and CDR-L3 as depicted in SEQ ID NO: 164;c) CDR-Hl as depicted in SEQ ID NO: 169, CDR-H2 as depicted in SEQ ID NO: 170, CDR-H3 as depicted in SEQ ID NO: 171, CDR-L1 as depicted in SEQ ID NO: 172, CDR-L2 as depicted in SEQ ID NO: 173 and CDR-L3 as depicted in SEQ ID NO: 174;d) CDR-Hl as depicted in SEQ ID NO: 179, CDR-H2 as depicted in SEQ ID NO: 180, ( DR-H3 as depicted in SEQ ID NO: 181, CDR-L1 as depicted in SEQ ID NO: 182, CDR-L2 as depicted in SEQ ID NO: 183 and CDR-L3 as depicted in SEQ ID NO: 184;e) CDR-Hl as depicted in SEQ ID NO: 189, CDR-H2 as depicted in SEQ ID NO: 190, CDR-H3 as depicted in SEQ ID NO: 191, CDR-L1 as depicted in SEQ ID NO: 192, CDR-L2 as depicted in SEQ ID NO: 193 and CDR-L3 as depicted in SEQ ID NO: 194;f) CDR-Hl as depicted in SEQ ID NO: 199, CDR-H2 as depicted in SEQ ID NO: 200, CDR-H3 as depicted in SEQ ID NO: 201, CDR-L1 as depicted in SEQ ID NO: 202, CDR-L2 as depicted in SEQ ID NO: 203 and CDR-L3 as depicted in SEQ ID NO: 204;g) CDR-Hl as depicted in SEQ ID NO: 209, CDR-H2 as depicted in SEQ ID NO: 210, CDR-H3 as depicted in SEQ ID NO: 21 1, CDR-L1 as depicted in SEQ ID NO: 212, CDR-L2 as depicted in SEQ ID NO: 213 and CDR-L3 as depicted in SEQ ID NO: 214;h) CDR-Hl as depicted in SEQ ID NO: 219, CDR-H2 as depicted in SEQ ID NO: 220, CDR-H3 as depicted in SEQ ID NO: 221, CDR-L1 as depicted in SEQ ID NO: 222, CDR-L2 as depicted in SEQ ID NO: 223 and CDR-L3 as depicted in SEQ ID NO: 224;i) CDR-Hl as depicted in SEQ ID NO: 229, CDR-H2 as depicted in SEQ ID NO: 230, CDR-H3 as depicted in SEQ ID NO: 231, CDR-L1 as depicted in SEQ ID NO: 232, CDR-L2 as depicted in SEQ ID NO: 233 and CDR-L3 as depicted in SEQ ID NO: 234;and j) CDR-Hl as depicted in SEQ ID NO: 239, CDR-H2 as depicted in SEQ ID NO: 240, CDR-H3 as depicted in SEQ ID NO: 241, CDR-L1 as depicted in SEQ ID NO: 242, CDR-L2 as depicted in SEQ ID NO: 243 and CDR-L3 as depicted in SEQ ID NO: 244. 7. The antibody construct according to any one of claims 1, 3, 4 and 5, wherein the first binding domain comprises a VH region comprising C DR-H 1 , CDR-H2 and ( DR-H3 and a V L region comprising CDR-Ll, CDR-L2 and CDR-L3 selected from the group consisting of: a) CDR-H1 as depicted in SEQ ID NO: 279, CDR-H2 as depicted in SEQ ID NO: 280, CDR-H3 as depicted in SEQ ID NO: 281, CDR-Ll as depicted in SEQ ID NO: 282, CDR-L2 as depicted in SEQ ID NO: 283 and CDR-L3 as depicted in SEQ ID NO: 284;b) CDR-H1 as depicted in SEQ ID NO: 289, CDR-H2 as depicted in SEQ ID NO: 290, CDR-H3 as depicted in SEQ ID NO: 291, CDR-Ll as depicted in SEQ ID NO: 292, CDR-L2 as depicted in SEQ ID NO: 293 and CDR-L3 as depicted in SEQ ID NO: 294;c) CDR-H1 as depicted in SEQ ID NO: 299, CDR-H2 as depicted in SEQ ID NO: 300, CDR-H3 as depicted in SEQ ID NO: 301, CDR-Ll as depicted in SEQ ID NO: 302, CDR-L2 as depicted in SEQ ID NO: 303 and CDR-L3 as depicted in SEQ ID NO: 304;d) CDR-H1 as depicted in SEQ ID NO: 309, CDR-H2 as depicted in SEQ ID NO: 310, CDR-H3 as depicted in SEQ ID NO: 311, CDR-Ll as depicted in SEQ ID NO: 312, CDR-L2 as depicted in SEQ ID NO: 313 and CDR-L3 as depicted in SEQ ID NO: 314;e) CDR-H1 as depicted in SEQ ID NO: 319, CDR-H2 as depicted in SEQ ID NO: 320, CDR-H3 as depicted in SEQ ID NO: 321, CDR-Ll as depicted in SEQ ID NO: 322, CDR-L2 as depicted in SEQ ID NO: 323 and CDR-L3 as depicted in SEQ ID NO: 324;f) CDR-H1 as depicted in SEQ ID NO: 329, CDR-H2 as depicted in SEQ ID NO: 330, CDR-H3 as depicted in SEQ ID NO: 331, CDR-Ll as depicted in SEQ ID NO: 332, CDR-L2 as depicted in SEQ ID NO: 333 and CDR-L3 as depicted in SEQ ID NO: 334;g) CDR-Hi as depicted in SEQ ID NO: 339, CDR-H2 as depicted in SEQ ID NO: 340, CDR-H3 as depicted in SEQ ID NO: 341, CDR-Ll as depicted in SEQ ID NO: 342, CDR-L2 as depicted in SEQ ID NO: 343 and CDR-L3 as depicted in SEQ ID NO: 344;and h) CDR-HI as depicted in SEQ ID NO: 349, CDR-H2 as depicted in SEQ ID NO: 350, DR-H3 as depicted in SEQ ID NO: 351, CDR-L l. as depicted in SEQ ID NO: 352, CD -L2 as depicted in SEQ ID NO: 353 and CDR-L3 as depicted in SEQ I D NO: 354. 8. The antibody construct according to claim 6, wherein the first binding domain comprises a V'H region selected from the group consisting of VH regions as depicted in SEQ I D NO: 155, SEQ ID NO: 165, SEQ ID NO: 175, SEQ ID NO: 185, SEQ ID NO: 195, SEQ I D NO: 205, SEQ ID NO: 215, SEQ I D NO: 225, SEQ I D NO: 235, and SEQ I D NO: 245. 9. The antibody construct according to claim 7, wherein the first binding domain comprises a V ' H region selected from the group consisting of VH regions as depicted in SEQ I D NO: 285, SEQ ID NO: 295, SEQ ID NO: 305, SEQ ID NO: 315, SEQ ID NO: 325, SEQ I D NO: 335, SEQ I D NO: 345, and SEQ I D NO: 355. 10. The antibody construct according to claim 6 or 8, wherein the first binding domain comprises a VL region selected from the group consisting of VL regions as depicted in SEQ ID NO: 156, SEQ ID NO: 166, SEQ ID NO: 176, SEQ ID NO: 186, SEQ ID NO: 196, SEQ ID NO: 206, SEQ I D NO: 216, SEQ I D NO: 226, SEQ I D NO: 236, and SEQ I D NO: 246. 1 1. The antibody construct according to claim 7 or 9, wherein the first binding domain comprises a VL region selected from the group consisting of VL regions as depicted in SEQ ID NO: 286, SEQ ID NO: 296, SEQ ID NO: 306, SEQ ID NO: 3 16, SEQ ID NO: 326, SEQ I D NO: 336, SEQ I D NO: 346, and SEQ I D NO: 356. 12. The antibody construct according to any one of claims 6, 8 or 10, wherein the first binding domain comprises a VH region and a V 1 region selected from the group consisting of pairs of a VI I region and a VL region as depicted in SEQ ID NO: 155+156, SEQ ID NO: 165+166, SEQ ID NO: 175+176, SEQ ID NO: 185+186, SEQ ID NO: 195+196, SEQ ID NO: 205+206, SEQ ID NO: 215+216, SEQ ID NO: 225+226, SEQ ID NO: 235+236, and SEQ I D NO: 245+246. 13. The antibody construct according to any one of claims 7, 9 or 1 1, wherein the first binding domain comprises a VH region and a V L region selected from the group consisting of pairs of a VH region and a VL region as depicted in SEQ ID NO: 285+286, SEQ ID NO: 295+296, SEQ ID NO: 305+306, SEQ ID NO: 315+316, SEQ ID NO: 325+326, SEQ I D NO: 335+336, SEQ I D NO: 345+346, and SEQ I D NO: 355+356. 14. The antibody construct according to any one of the preceding claims, wherein the antibody construct is in a format selected from the group consisting of (scFv)2, scFv-single domain mAb, diabodies and oligomers of the foregoing formats. 15. The antibody construct according to any one of claims 6, 8, 10, 12 or 14, wherein the first binding domain comprises an amino acid sequence selected from the group consisting of those depicted in SEQ ID NO: 157, SEQ ID NO: 167, SEQ I NO: 177, SEQ I NO: 187, SEQ ID NO: 197, SEQ ID NO: 207, SEQ ID NO: 217, SEQ ID NO: 227, SEQ ID NO: 237, and SEQ ID NO: 247. 16. The antibody construct according to any one of claims 7, 9, 11, 13 or 14, wherein the first binding domain comprises an amino acid sequence selected from the group consisting of those depicted in SEQ I NO: 287, SEQ I NO: 297, SEQ ID NO: 307, SEQ ID NO: 317, SEQ I NO: 327, SEQ ID NO: 337, SEQ I NO: 347, and SEQ ID NO: 357. 17. The antibody construct according to any one of the preceding claims, wherein the second binding domain binds to human and Callithrix jacchus, Saguinus Oedipus or Saimiri sciureus CD3 epsilon. 18. The antibody construct according to any one of claims 6, 8, 10, 12, 14, 15 or 17, comprising an amino acid sequence selected from the group consisting of those depicted in SEQ ID NO: 158, SEQ ID NO: 168, SEQ ID NO: 178, SEQ ID NO: 188, SEQ ID NO: 198, SEQ I NO: 208, SEQ I NO: 218, SEQ ID NO: 228, SEQ I NO: 238, and SEQ ID NO: 248. 19. The antibody construct according to any one of claims 7, 9, 11, 13, 14, 16 or 17 comprising an amino acid sequence selected from the group consisting of those depicted in SEQ I NO: 288, SEQ ID NO: 298, SEQ ID NO: 308, SEQ ID NO: 318, SEQ ID NO: 328, SEQ ID NO: 338, SEQ ID NO: 348, and SEQ ID NO: 358. 20. The antibody construct according to any one of claims 6, 8, 10, 12, 14, 15, 17 or 18, comprising an amino acid sequence selected from the group consisting of those depicted in SEQ ID NO: 379, SEQ ID NO: 380, SEQ ID NO: 381, SEQ ID NO: 382, SEQ ID NO: 383, SEQ ID NO: 384, SEQ ID NO: 385, SEQ ID NO: 386, SEQ ID NO: 387, SEQ ID NO: 388, SEQ ID NO: 389, SEQ ID NO: 422, SEQ ID NO: 423, SEQ ID NO: 424, SEQ ID NO: 425, SEQ I NO: 426 and SEQ ID NO: 427. 21. A polynucleotide encoding an antibody construct as defined in any one of the preceding claims. 22. A vector comprising a polynucleotide as defined in claim 21. A host cell transformed or transfected with the polynucleotide as defined in claim 21 or with the vector as defined in claim 22. A process for the production of an antibody construct according to any one of claims 1 to 20, said process comprising culturing a host cell as defined in claim 23 under conditions allowing the expression of the antibody construct as defined in any one of claims 1 to 20 and recovering the produced antibody construct from the culture. A pharmaceutical composition comprising an antibody construct according to any one of claims 1 to 20, or produced according to the process of claim 24. The antibody construct according to any one of claims 1 to 20, or produced according to the process of claim 24, for use in the prevention, treatment or amelioration of a tumor or a cancer. The antibody construct according to claim 26, wherein the cancer is selected from the group consisting of, lung carcinoma, head and neck carcinoma, a primary or secondary CNS tumor, a primary or secondary brain tumor, primary CNS lymphoma, spinal axis tumors, brain stem glioma, pituitary adenoma, adrenocortical cancer, esophagus carcinoma, colon cancer, breast cancer, ovarian cancer, NSCLC (non- small cell lung cancer), SCLC (small cell lung cancer), endometrial cancer, cervical cancer, uterine cancer, transitional cell carcinoma, bone cancer, pancreatic cancer, skin cancer, cutaneous or intraocular melanoma, hepatic cancer, biliary duct cancer, gall bladder cancer, kidney cancer, rectal cancer, cancer of the anal region, stomach cancer, gastrointestinal (gastric, colorectal, and duodenal) cancer, cancer of the small intestine, biliary tract cancer, cancer of the urethra, renal cell carcinoma, carcinoma of the endometrium, thyroid cancer, testicular cancer, cutaneous squamous cell cancer, melanoma, stomach cancer, prostate cancer, bladder cancer, osteosarcoma, mesothelioma, Hodgkin's Disease, non hodgkins's lymphoma, chronic or acute leukemia, chronic myeloid leukemia, lymphocytic lymphomas, multiple myeloma, fibrosarcoma, neuroblastoma, retinoblastoma, and soft tissue sarcoma. The antibody construct according to claim 27, wherein the cancer is a squamous cell carcinoma. A method for the treatment, prevention or amelioration of a tumor or cancer, comprising the step of administering to a subject in need thereof the antibody construct according to any one of claims 1 to 20, or produced according to the process of claim 24. The method according to claim 29, wherein the cancer is selected from the group consisting of, lung carcinoma, head and neck carcinoma, a primary or secondary CNS tumor, a primary or secondary brain tumor, primary CNS lymphoma, spinal axis tumors, brain stem glioma, pituitary adenoma, adrenocortical cancer, esophagus carcinoma, colon cancer, breast cancer, ovarian cancer, NSCLC (non- small cell lung cancer), SCLC (small cell lung cancer), endometrial cancer, cervical cancer, uterine cancer, transitional cell carcinoma, bone cancer, pancreatic cancer, skin cancer, cutaneous or intraocular melanoma, hepatic cancer, biliary duct cancer, gall bladder cancer, kidney cancer, rectal cancer, cancer of the anal region, stomach cancer, gastrointestinal (gastric, colorectal, and duodenal) cancer, cancer of the small intestine, biliary tract cancer, cancer of the urethra, renal cell carcinoma, carcinoma of the endometrium, thyroid cancer, testicular cancer, cutaneous squamous cell cancer, melanoma, stomach cancer, prostate cancer, bladder cancer, osteosarcoma, mesothelioma, Hodgkin's Disease, non hodgkins's lymphoma, chronic or acute leukemia, chronic myeloid leukemia, lymphocytic lymphomas, multiple myeloma, fibrosarcoma, neuroblastoma, retinoblastoma, and soft tissue sarcoma. The method according to claim 30 wherein the cancer is a squamous cell carcinoma. A kit comprising an antibody construct according to any one of claims 1 to 20, an antibody construct produced according to the process of claim 24, a vector as defined in claim 22, and/or a host cell as defined in claim 23.