WO2015073721A1

Monovalent antigen binding constructs targeting egfr and/or her2 and uses thereof

Abstract

Provided herein are monovalent antigen-binding constructs targeting EGFR and/or HER2. The monovalent antigen-binding constructs can include at least one antigen-binding polypeptide comprising a heavy chain variable domain, wherein the antigen-bind polypeptide specifically binds EGFR and/or HER2; and a heterodimeric Fc domain, the Fc domain comprising at least two CH3 domains, wherein the Fc domain is coupled, with or without a linker, to the antigen-binding polypeptide. Also provided are methods of making the constructs and methods of using the constructs.

WO2015073721A1, drawing sheet 1
Sheet 1 of 40

Term

No projected expiry on record.

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112 claims: 47 independent, 65 dependent

  1. 1
    CLAIMS 1. A method of treating a subject having an epidermal growth factor receptor (EGFR)- expressing tumor, comprising:contacting the tumor with an effective amount of an isolated monovalent EGFR-binding construct comprising at least one antigen-binding polypeptide comprising a heavy chain variable domain coupled, with or without a linker, to a heterodimeric Fc, wherein the antigen-binding polypeptide binds or specifically binds to EGFR, and wherein the construct binds to EGFR with a greater Bmax as compared to the corresponding isolated monospecific bivalent antigen-binding construct that binds or specifically binds EGFR.
  2. 30
    The method of any one of claims 25-29, wherein the additional agent is a second isolated antigen binding construct.
  3. 33
    The method of any one of claims 24-32 wherein the treatment results in shrinking the tumor, inhibiting the growth of the tumor, increasing time to progression of the tumor, prolonging disease-free survival of the subject, or increasing the survival of the subject.
  4. 35
    An isolated monovalent antigen-binding construct comprising:at least one antigen-binding polypeptide comprising a heavy chain variable domain, wherein the antigen-binding polypeptide binds or specifically binds epidermal growth factor receptor (EGFR);and a heterodimeric Fc, the Fc comprising at least two CH3 sequences, wherein the Fc is coupled, with or without a linker, to the antigen-binding polypeptide;wherein the monovalent antigen-binding construct selectively and/or binds or specifically binds EGFR with a greater Bmax as compared to an isolated, corresponding monospecific bivalent antigen-binding construct that binds or specifically binds EGFR;and wherein the dimerized CH3 sequences have a melting temperature (Tm) of about 68°C or higher.
  5. 37
    The isolated monovalent antigen-binding construct of any preceding construct claim, wherein at a construct to target ratio of 1 :1 the increase in Bmax relative to the monospecific bivalent antigen-binding construct is observed at a concentration greater than the observed equilibrium constant (Kd) of the constructs up to saturating concentrations.
  6. 38
    The isolated monovalent antigen-binding construct of any preceding construct claim, wherein the isolated monovalent antigen-binding construct has a lower affinity for EGFR relative to isolated, corresponding monospecific bivalent antigen-binding construct that binds or specifically binds EGFR.
  7. 39
    The isolated monovalent antigen-binding construct of any preceding construct claim, wherein the isolated monovalent antigen-binding construct binds to an epitope located in extracellular domains 1, 2, 3, or 4 of EGFR or the extracellular domain of EGFR.
  8. 40
    The isolated monovalent antigen-binding construct of any preceding construct claim, wherein the antigen-binding polypeptide further comprises a light chain variable domain, a light chain CLl domain, and/or a heavy chain CHI domain.
  9. 41
    The isolated monovalent antigen-binding construct of any preceding construct claim, wherein the amino acid sequence of the heavy chain variable domain is at least 80, 85, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, or 100% identical to the amino acid sequence of an EGFR-specific antigen-binding polypeptide heavy chain variable domain set forth in Table B, and wherein the amino acid sequence of the light chain variable domain is at least 80, 85, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, or 100% identical to the amino acid sequence of an EGFR-specific antigen-binding polypeptide light chain variable domain set forth in Table B.
  10. 42
    The isolated monovalent antigen-binding construct of any preceding construct claim, wherein the amino acid sequence of the light chain CLl domain is at least 80, 85, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, or 100% identical to the amino acid sequence of an EGFR-specific antigen-binding polypeptide light chain CLl domain set forth in Table B, and wherein the amino acid sequence of the heavy chain CHI domain is at least 80, 85, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, or 100% identical to the amino acid sequence of an EGFR-specific antigen-binding polypeptide heavy chain CHI domain set forth in Table B.
  11. 43
    The isolated monovalent antigen-binding construct of any preceding construct claim, wherein the antigen binding polypeptide is an Fab fragment, an scFv, an sdAb, an antigen binding peptide, or a protein domain capable of binding the antigen.
  12. 44
    The isolated monovalent antigen-binding construct of any preceding construct claim, wherein the antigen binding polypeptide comprises a heavy chain polypeptide and a light chain polypeptide.
  13. 46
    The isolated monovalent antigen-binding construct of any preceding construct claim, having a binding affinity (KD) for EGFR of less than or equal to 1.16E-8 M to 8.51E- 10 M.
  14. 47
    The isolated monovalent antigen-binding construct of any preceding construct claim, when bound to EGFR inhibits A431 cell growth relative to a control and/or increases % ADCC-mediated target cell lysis of BT-474 cells relative to a control and/or causes internalization of EGFR, and/or causes downregulation of EGFR.
  15. 48
    The isolated monovalent antigen-binding construct of any preceding construct claim, wherein the construct is internalized into a cell upon binding to EGFR on the cell.
  16. 49
    The isolated monovalent antigen-binding construct of any preceding construct claim, wherein the Fc is fused to the antigen-binding polypeptide by a linker.
  17. 52
    The isolated monovalent antigen-binding construct of any preceding construct claim, wherein EGFR is EGFR isoform A or EGFRvIII.
  18. 53
    The isolated monovalent antigen-binding construct of any preceding construct claim, wherein the construct is conjugated to at least one drug.
  19. 57
    The isolated monovalent antigen-binding construct of any preceding construct claim, wherein the construct or the antigen-binding polypeptide is neutralizing.
  20. 58
    The isolated monovalent antigen-binding construct of any preceding construct claim, wherein the construct or the antigen-binding polypeptide is non-neutralizing.
  21. 59
    The isolated monovalent antigen-binding construct of any preceding construct claim, wherein the Fc is a human Fc.
  22. 61
    The isolated monovalent antigen-binding construct of any preceding construct claim, wherein the dimerized CH3 sequences have a melting temperature (Tm) of about 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 77.5, 78, 79, 80, 81, 82, 83, 84, or 85°C or higher.
  23. 62
    The isolated monovalent antigen-binding construct of any preceding construct claim, wherein the Fc is a heterodimer formed with a purity greater than about 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, or 99% when expressed.
  24. 64
    The isolated monovalent antigen-binding construct of any preceding construct claim, wherein the heterodimeric Fc comprises one or more modifications in at least one of the CH3 sequences.
  25. 65
    The isolated monovalent antigen-binding construct of any preceding construct claim, wherein the heterodimeric Fc domain comprises one or more modifications in at least one of the CH3 sequences that promote the formation of a heterodimer with stability comparable to a wild-type homodimeric Fc.
  26. 66
    The isolated monovalent antigen-binding construct of any preceding construct claim, wherein the heterodimeric Fc domain comprises is a heterodimeric IgGl Fc having the mutations T350V L351Y F405A Y407V in Chain A, according to EU numbering, and the mutations T350V T366L K392L T394W in Chain B, according to EU numbering.
  27. 67
    The isolated monovalent antigen-binding construct of any preceding construct claim, wherein the heterodimeric Fc further comprises at least one CH2 domain.
  28. 69
    The isolated monovalent antigen-binding construct of any preceding construct claim, wherein the heterodimeric Fc comprises one or more modifications to promote selective binding of Fc-gamma receptors.
  29. 70
    A second isolated monovalent antigen-binding construct that competes for binding to EGFR with the isolated monovalent antigen-binding construct according to any preceding construct claim, optionally wherein, the second isolated monovalent antigen-binding construct displaces the isolated monovalent antigen-binding construct according to any preceding construct claim by greater than 50%, 60%, 70%>, 80%>, 90%, 95%, 99%, or 100%.
  30. 71
    An isolated monovalent antigen-binding construct according to any preceding construct claim, wherein the construct is characterized by one or more of:d. higher cell surface binding (BMAX) as determined by FACS on one or more of BT474 cells, HCT116 cells, MDA-MB-234 cells, or SKOV3 cells compared to the corresponding isolated monospecific bivalent antigen-binding construct that binds or specifically binds EGFR, e. mediation of increased antibody dependent cellular cytotoxicity (ADCC) of BT-474 cells compared to that mediated by the corresponding isolated monospecific bivalent antigen-binding construct that binds or specifically binds EGFR, or f. internalization by JIMT1 cells;when the cells are contacted by the construct.
  31. 72
    An isolated monovalent antigen-binding construct according to any preceding construct claim, wherein the construct is afucosylated, and wherein the construct mediates a 1.9 fold increase in ADCC of A549 cells and/or a 1.4-fold increase in ADCC of HCT116 cells over that mediated by the corresponding isolated monospecific bivalent antigen-binding construct that binds or specifically binds EGFR.
  32. 73
    The isolated monovalent antigen-binding construct of any preceding construct claim, the antigen binding construct comprises at least one modification, and wherein the modification is afucosylation.
  33. 74
    An isolated polynucleotide or set of isolated polynucleotides comprising at least one sequence that encodes the isolated monovalent antigen-binding construct of any one of claims 35-73.
  34. 76
    A vector or set of vectors comprising one or more of the polynucleotides or sets of polynucleotides according to any preceding polynucleotide claim.
  35. 78
    An isolated cell comprising a polynucleotide or set of polynucleotides according to any proceeding polynucleotide claim or any preceding vector claim.
  36. 80
    A pharmaceutical composition comprising an isolated monovalent antigen-binding construct of any one of claims 35-73 and a pharmaceutically acceptable carrier.
  37. 82
    The pharmaceutical composition according to any preceding pharmaceutical composition claim further comprising a second isolated antigen binding construct.
  38. 86
    The pharmaceutical composition according to any preceding pharmaceutical composition for use in a medicine.
  39. 87
    The pharmaceutical composition any preceding pharmaceutical composition, for use in treating a cancerous condition.
  40. 89
    A method of obtaining the isolated monovalent antigen-binding construct according to any of claims 35-73, the method comprising the steps of:(a) obtaining a host cell culture, wherein the host cell comprises one or more nucleic acid sequences encoding the antigen-binding construct;(b) culturing the host cell culture under conditions sufficient to express the isolated monovalent antigen-binding construct;and (c) recovering the antigen-binding construct from the host cell culture.
  41. 90
    A method of treating cancer or a disorder related to EGFR and/or HER signaling in a subject comprising providing to a subject in need thereof an effective amount of the pharmaceutical composition of any preceding pharmaceutical composition claim or any preceding construct claim.
  42. 92
    The method of any one of claims 90-91, wherein the method comprises providing the isolated monovalent construct in addition to an additional agent.
  43. 95
    The method of any one of claims 92-94, wherein the additional agent is a second, distinct isolated antigen binding construct.
  44. 103
    A method of inhibiting growth of a tumor, shrinking a tumor, or increasing the survival of a subject having a tumor, comprising contacting the tumor with an effective amount of the composition of any preceding pharmaceutical composition claim or the construct of any preceding construct claim.
  45. 109
    A method of inhibiting, reducing or blocking the EGFR and/or HER signaling in a cell, comprising contacting the cell with an effective amount of the construct according to the composition of any preceding pharmaceutical composition claim or the construct of any preceding construct claim.
  46. 111
    A kit comprising an isolated antigen binding construct of any of the preceding construct claims and instructions for use, and optionally, further comprising a second isolated antigen binding construct.
  47. 112
    An isolated antigen binding construct according to any of the preceding construct claims for use in the manufacture of a medicament for treating a disease, optionally wherein the disease is cancer.
Independent claims47