IL287787A

Phenylaminopyrimidine amide autophagy inhibitors and methods of use thereof

Abstract

This record has no abstract on file.

IL287787A, drawing sheet 1
Sheet 1 of 255

Term

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  2. Published
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101 claims: 52 independent, 49 dependent

  1. 1
    What is claimed is:1. A compound represented by: m Formula I or a pharmaceutically acceptable salt, enantiomer, stereoisomer, or tautomer thereof, wherein: W is CH or N;X is CH or N;Y is C(R3) or N;R1 is selected from the group consisting of halogen, cyano, C1-C5alkyl, and C3C5cycloalkyl, wherein each C!-C5alkyl and C3-C5cycloalkyl may be optionally substituted by one, two or three independent occurrences of fluorine;R2 is selected from the group consisting of H, halogen, cyano, C!-C5alkyl, C3C6cycloalkyl, C2-C5alkenyl, C2-C5alkynyl, C!-C5alkoxy, and C1-C5alkoxy-C2-C5alkyl, wherein each C!-C5alkyl, C3-C6cycloalkyl, C2-C5alkenyl, C2-C5alkynyl, and C!-C5alkoxy may be optionally substituted by one, two, or three independent occurrences of fluorine or cyano;each occurrence of R3 and R33 is independently selected from the group consisting of H, halogen, C!.C6alkyl, and C!.C6alkoxy, wherein each C!-C6alkyl and C!-C6alkoxy may be optionally substituted by one or more independent occurrences of fluorine;R4 is selected from the group consisting of B, D, NR6R9, NR6-(C(R10)2)P-NR9R9, C(O)-NR6R9;C(O)-B;C(O)-D , and CN;B is selected from an N-linked heterocyclyl having at least one nitrogen and optionally having an additional ring nitrogen or oxygen and heteroaryl, wherein B may be optionally substituted on one or more available carbons by R7 and may be optionally substituted on an available nitrogen by R9;D is selected from a C-linked heterocyclyl having at least one nitrogen and optionally having an additional ring nitrogen or oxygen and heteroaryl, wherein D may be optionally substituted on one or more available carbons by R7 and may be optionally substituted on an available nitrogen by R9;each occurrence of R5 is independently selected from the group consisting of H, CiC6alkyl, C3-C6cycloalkyl, and heterocyclyl, wherein each C!-C6alkyl and C3-C6cycloalkyl may be optionally substituted by one or more independent occurrences of fluorine;each occurrence of R7 is independently selected from the group consisting of H, CiC6alkyl, C3-C6cycloalkyl, cyano, and (C(R10)2)h-NR9R9, wherein each C!-C6alkyl and C3C6cycloalkyl may be optionally substituted by one or more independent occurrences of fluorine, or two R7 are joined together with the atom to which they are attached to form oxo;each occurrence of R6 and R9 is independently selected from the group consisting of H, C1-C6alkyl, C3-C6cycloalkyl, C1-C5alkoxy-C2-C5alkyl, C(=0)R5, SO2R5, and D, wherein each C1-C6alkyl and C3-C6cycloalkyl may be optionally substituted by one or more independent occurrences of fluorine;each occurrence of R10is independently selected from the group consisting of H, CiC3alkyl, and C3-C5cycloalkyl, wherein each C!-C3alkyl and C3-C5cycloalkyl may be optionally substituted by one or more independent occurrences of fluorine, or two R10 are joined together with the carbon to which they are attached to form a C3-C5cycloalkyl;Z is selected from the group consisting of a 4 membered lactam ring bound through the nitrogen atom or a 6-10 membered lactam ring bound through the nitrogen atom, wherein a lactam ring atom may optionally be oxygen or NR6 when the lactam ring is a 6-10 membered ring and an available carbon atom on 4 membered lactam ring or a 6-10 membered lactam is optionally substituted by R36;each occurrence of R36 is independently selected from C1-C6alkyl and C3C6cycloalkyl, wherein each C!-C6alkyl and C3-C6cycloalkyl may be optionally substituted by one or more independent occurrences of fluorine, or two R36 are joined together with the carbon to which they are attached to form a C3-C6cycloalkyl;h is 1, 2, or 3;m is 0, 1, 2, or 3;n is 2, 3, or 4;and p is 2 or 3;provided that both X and Y are not N.
  2. 5
    The compound of any one of claims 1-4, wherein Z is selected from:wherein V is selected from the group consisting of oxygen, C(R34)2, and NR6;each occurrence of R34 is independently selected from H and R36, wherein each occurrence of R36 is independently selected from C!-C6alkyl and C3-C6cycloalkyl, or two R36 are joined together with the carbon to which they are attached to form a C3-C6cycloalkyl;q is 0, 1, 2, or 3;and r is 2 or 4;provided that, if q is 0, then r is not 2.
  3. 6
    The compound of any one of claims 1-5, wherein Z is selected from:wherein V is selected from the group consisting of oxygen, C(R34)2, and NR6;each occurrence of R34 is independently selected from H and R36, wherein each occurrence of R36 is independently selected from C!-C6alkyl and C3-C6cycloalkyl, or two R36 are joined together with the carbon to which they are attached to form a C3-C6cycloalkyl;q is 0, 1, 2, or 3;and r is 2 or 3;provided that, if q is 0, then r is not 2.
  4. 7
    The compound of any one of claims 1-6, wherein Z is selected from the group consisting of:
  5. 8
    The compound of any one of claims 1-7, wherein Z is selected from:and wherein V is selected from the group consisting of oxygen, C(R34)2, and NR6;q is 0, 1, 2, or 3;and r is 2 or 3;provided that, if q is 0, then r is not 2.
  6. 9
    The compound of any one of claims 1-8, wherein Z is selected from the group consisting of:
  7. 10
    The compound of any one of claims 1-9, wherein R4 is B.
  8. 11
    The compound of any one of claims 1-9, wherein R4 is selected from the group wherein u is 1 or 2.
  9. 12
    The compound of any one of claims 1-11, wherein R4 is selected from the group consisting of:I N
  10. 13
    The compound of any one of claims 1-12, wherein R4 is selected from the group consisting of:
  11. 14
    The compound of any one of claims 1-13, wherein R4 is selected from the group consisting of:
  12. 15
    Hie compound of any one of claims 1-9, wherein R4 is D.
  13. 16
    The compound of any one of claims 1-9, wherein R4 is selected from the group consisting of:and
  14. 17
    Hie compound of any one of claims 1-16, wherein m is 0.
  15. 18
    Hie compound of any one of claims 1-16, wherein m is 1.
  16. 19
    Hie compound of any one of claims 1-16, wherein m is 2.
  17. 20
    Hie compound of any one of claims 1-16, wherein m is 3.
  18. 21
    The compound of any one of claims 1-20, wherein R1 is selected from the group consisting of halogen, C!-C5alkyl, and C3-C5cycloalkyl, wherein C!-C5alkyl may be optionally substituted with one, two, or three occurrences of fluorine.
  19. 22
    The compound of any one of claims 1-21, wherein R1 is CF3.
  20. 23
    The compound of any one of claims 1-21, wherein R1 is CF2H.
  21. 24
    The compound of any one of claims 1-21, wherein R1 is halogen.
  22. 26
    Hie compound of any one of claims 1-21, wherein R1 is cyclopropyl.
  23. 27
    The compound of any one of claims 1-26, wherein R2 is selected from the group consisting of H, C3-C5cycloalkyl, C!-C5alkyl, halogen, CN, C2-C5alkenyl, and C2-C5alknyl, wherein C1-C5alkyl may be optionally substituted with one, two, or three independent occurrences of fluorine.
  24. 28
    The compound of any one of claims 1-26, wherein R2 is selected from the group consisting of C!-2alkyl and C3-4cycloalkyl.
  25. 29
    The compound of any one of claims 1-26, wherein R2 is selected from the group consisting of chloro and bromo.
  26. 30
    The compound any one of claims 1-26, wherein R2 is selected from the group consisting of C!-C5alkyl, H, and C3-C4cycloalkyl.
  27. 31
    The compound of any one of claims 1-30, wherein n is 3.
  28. 32
    A compound represented by:R4 Formula II or a pharmaceutically acceptable salt thereof, wherein: n is 2, 3, or 4;R1 is selected from the group consisting of halogen, cyano, C1-C5alkyl, and C3C5cycloalkyl, wherein each C1-C5alkyl and C3-C5cycloalkyl may be optionally substituted by one, two or three independent occurrences of fluorine;R2 is selected from the group consisting of halogen, C1-C2alkyl and C3-C4cycloalkyl;R4 is selected from the group consisting of: each occurrence of R6 and R9 is independently selected from the group consisting of H, C1-C6alkyl, C3-C6cycloalkyl, C(=O)R5, SO2R5, and D, wherein each C1-C6alkyl and C3C6cycloalkyl may be optionally substituted by one or more independent occurrences of fluorine;each occurrence of R5 is independently selected from the group consisting of H, CiC6alkyl, C3-C6cycloalkyl, and heterocyclyl, wherein each C1-C6alkyl and C3-C6cycloalkyl may be optionally substituted by one or more independent occurrences of fluorine;each occurrence of R7 is independently selected from the group consisting of H, C1-C6 alkyl, and C3-C6cycloalkyl, wherein each C1-C6alkyl and C3-C6cycloalkyl may be optionally substituted by one or more independent occurrences of fluorine, or two R7 are joined together with the atom to which they are attached to form oxo;D is selected from a C-linked heterocyclyl having at least one nitrogen and optionally having an additional ring nitrogen or oxygen and heteroaryl, wherein D may be optionally substituted on one or more available carbons by R7 and may be optionally substituted on an available nitrogen by R9;Z is selected from the group consisting of: each occurrence of R34 is independently selected from H and R36, wherein each occurrence of R36 is independently selected from C1-C6alkyl and C3-C6cycloalkyl, wherein each C1-C5alkyl and C3-C6cycloalkyl may be optionally substituted by one or more independent occurrences of fluorine, or two R36 are joined together with the carbon to which they are attached to form a C3-C6cycloalkyl.
  29. 39
    The compound of any one of claims 32-38, wherein R2 is selected from the group consisting of H, C3-C4cycloalkyl, C!-C5alkyl, and halogen.
  30. 40
    The compound of any one of claims 32-39, wherein R2 is selected from the group consisting of C!-C2alkyl, C3-C4cycloalkyl, bromo, and chloro.
  31. 41
    The compound of any one of claims 32-40, wherein R4 is selected from the group consisting of:
  32. 42
    The compound of any one of claims 32-41, wherein R4 is selected from the group consisting of:
  33. 43
    Hie compound of any one of claims 32-42, wherein each occurrence of R6 and R9 is independently selected from the group consisting of H, C!-C6alkyl, and C3-C6cycloalkyl, wherein each of C!-C6alkyl and C3-C6cycloalkyl is optionally substituted by one or more independent occurrences of fluorine.
  34. 44
    The compound of any one of claims 32-45, wherein each occurrence of R7 is H.
  35. 45
    The compound of any one of claims 32-46, wherein each occurrence of R34 is independently selected from the group consisting of H and C1-C5alkyl, wherein C1-C5alkyl may be optionally substituted by one, two, or three independent occurrences of fluorine.
  36. 46
    The compound of any one of claims 32-44, wherein two R34 are joined together with the carbon to which they are attached to form C3-C6cycloalkyl.
  37. 47
    The compound of any one of claims 32-46, wherein Z is selected from the group consisting of:
  38. 48
    The compound of any one of claims 32-47, wherein Z is selected from the group consisting of:
  39. 49
    The compound of any one of claims 32-48, wherein n is 3.
  40. 50
    A compound represented by:Formula IIA.2-A wherein R1 is selected from the group consisting of CF3, CF2H, bromo, chloro, and cyclopropyl;R2 is selected from the group consisting of C!-C2alkyl, C3-C4cycloalkyl, and halogen;and R9 is selected from the group consisting of C!-C3alkyl, H, and C3-C5cycloalkyl.
  41. 53
    A compound represented by:I R9 Formula IIA.7-A wherein R1 is selected from the group consisting of bromo, chloro, CF3, CF2H, and cyclopropyl;R2 is selected from the group consisting of C!-C2alkyl, C3-C4cycloalkyl, and halogen;and R9 is selected from the group consisting of C!-C3alkyl, H, or C3-C5cycloalkyl.
  42. 57
    A compound represented by:c I R9 Formula IIA.8-A wherein R1 is selected from the group consisting of bromo, chloro, CF3, CF2H, and cyclopropyl;R2 is selected from the group consisting of C!-C2alkyl, C3-C4cycloalkyl, and halogen;and R9 is C!-C3alkyl, H, or C3-C5cycloalkyl.
  43. 61
    A compound represented by:Formula IIA.ll-A wherein R1 is selected from the group consisting of bromo, chloro, CF3, CF2H, and cyclopropyl;R2 is selected from the group consisting of C!-C2alkyl, C3-C4cycloalkyl, and halogen;and R9 is selected from the group consisting of C!-C3alkyl, H, and C3-C5cycloalkyl.
  44. 65
    A compound represented by:Formula IIA.14-A wherein R1 is selected from the group consisting of bromo, chloro, CF3, CF2H, and cyclopropyl;R2 is selected from the group consisting of C!-C2alkyl, C3-C4cycloalkyl, and halogen;and R9 is C!-C3alkyl, H, or C3-C5cycloalkyl.
  45. 69
    A compound represented by:wherein R1 is selected from the group consisting of bromo, chloro, CF3, CF2H, and cyclopropyl;and R2 is selected from the group consisting of C!-C2alkyl, C3-C4cycloalkyl, and halogen.
  46. 73
    A compound represented by:Formula IIA.44-A wherein R1 is selected from the group consisting of bromo, chloro, CF3, CF2H, and cyclopropyl;and R2 is selected from the group consisting of C!-C2alkyl, C3-C4cycloalkyl, and halogen.
  47. 77
    78. A pharmaceutical composition comprising a compound of any one of claims 1-77 and a pharmaceutically acceptable excipient.
  48. 78
    79. A pharmaceutical composition comprising a compound of any one of claims 1-77, one or more additional therapeutic agents, and a pharmaceutically acceptable excipient.
  49. 79
    80. The pharmaceutical composition of claim 79, wherein the composition comprises one additional therapeutic agent.
  50. 81
    82. Hie pharmaceutical composition of claim 81, wherein the MAPKAP pathway inhibitor is selected from the group consisting of a MEK inhibitor, an ERK inhibitor, a RAF inhibitor, and a Ras inhibitor.
  51. 82
    83. Hie pharmaceutical composition of claim 82, wherein the MEK inhibitor is selected from the group consisting of trametinib, selumetinib, cobimetinib, binimetinib, and pharmaceutically acceptable salts thereof.
  52. 87
    88. The pharmaceutical composition of claim 87, wherein the chemotherapeutic agent is a selected from the group consisting of anti-tubulin agents, vinorelbine, DNA-alkylating agents, DNA intercalating agents, 5-fluorouracil, capecitabine, cytarabine, decitabine, 5-aza cytadine, gemcitabine, and methotrexate.
  53. 88
    89. A method of treating a tumor in a patient in need thereof, comprising administering to the patient a therapeutically effective amount of a compound of any one of claims 1-77.
  54. 89
    90. A method of treating a cancer in a patient in need thereof, comprising administering to the patient a therapeutically effective amount of a compound of any one of claims 1-77.
  55. 90
    91. The method of claim 90, wherein the cancer is selected from the group consisting of gastrointestinal stromal tumors, esophageal cancer, gastric cancer, melanomas, gliomas, glioblastomas, ovarian cancer, bladder cancer, pancreatic cancer, prostate cancer, lung cancers, breast cancers, renal cancers, hepatic cancers, osteosarcomas, multiple myelomas, cervical carcinomas, cancers that are metastatic to bone, papillary thyroid carcinoma, nonsmall cell lung cancer, and colorectal cancers.
  56. 92
    93. A method of treating a disorder selected from the group consisting of melanomas, glioblastomas, ovarian cancer, pancreatic cancer, prostate cancer, lung cancers, breast cancers, renal cancers, hepatic cancers, osteosarcomas, multiple myelomas, cervical carcinomas, cancers that are metastatic to bone, papillary thyroid carcinoma, non-small cell lung cancer, and colonic cancers in a patient in need thereof, comprising administering to the patient a therapeutically effective amount of a compound of any one of claims 1-77.
  57. 93
    94. Ilie method of any one of claims 89-93, further comprising administering to the patient one or more additional therapeutic agents.
  58. 94
    95. The method of claim 94, wherein the additional therapeutic agent is a MAPKAP pathway inhibitor.
  59. 95
    96. Ilie method of claim 95, wherein the MAPKAP pathway inhibitor is selected from the group consisting of a MEK inhibitor, an ERK inhibitor, a RAF inhibitor, and a Ras inhibitor.
  60. 101
    102. The method of claim 101, wherein the chemotherapeutic agent is a selected from the group consisting of anti-tubulin agents, vinorelbine, DNA-alkylating agents, DNA intercalating agents, 5-fluorouracil, capecitabine, cytarabine, decitabine, 5-aza cytadine, gemcitabine, and methotrexate.
Independent claims60