Modulators of irf5 expression
59 claims: 36 independent, 23 dependent
- 1WHAT IS CLAIMED:1. A compound comprising a modified oligonucleotide 8 to 80 linked nucleosides in length having a nucleobase sequence comprising at least 8, at least 9, at least 10, at least 11, or at least 12 contiguous nucleobases of any of the nucleobase sequences of SEQ ID NO: 228, SEQ ID NOs: 37-227, and SEQ ID NOs: 229-1356.
- 2A compound comprising a modified oligonucleotide 8 to 80 nucleosides in length and having a nucleobase sequence comprising the nucleobase sequence of any one of SEQ ID NOs:37-1356.
- 3A compound comprising a modified oligonucleotide having a nucleobase sequence consisting of any one of SEQ ID NOs:37-1356.
- 4A compound comprising a modified oligonucleotide 8 to 80 linked nucleosides in length, wherein the modified oligonucleotide has a nucleobase sequence comprising a portion of at least 8 contiguous nucleobases 100% complementary to an equal length portion of nucleobases 4366-4381, 5141-5156, 51405160,5179-5194, 11544-11559, 11542-11596, 11736-11751, 11737-11752, 11720-11790, or 11794-11809 of SEQ ID NO:2, and wherein the nucleobase sequence of the modified oligonucleotide is at least 85%, at least 90%, at least 95%, or 100% complementary to SEQ ID NO: 2.
- 5A compound comprising a modified oligonucleotide 8 to 80 linked nucleosides in length, wherein the modified oligonucleotide has a nucleobase sequence complementary within nucleobases 55675642, 5644-5731, 5567-5731, 5567-5620, 13697-13733, 20553-20676, 20664-20824, 20553-20824, and 25844-25912 of SEQ ID NO:2, and wherein said modified oligonucleotide is at least 85%, at least 90%, at least 95%, or 100% complementary to SEQ ID NO: 2.
- 6A compound comprising a modified oligonucleotide 8 to 80 linked nucleosides in length, wherein the modified oligonucleotide has a nucleobase sequence comprising a portion of at least 8 contiguous nucleobases complementary to an equal length portion of nucleobases 5567-5642, 5644-5731, 5567-5731, 5567-5620, 13697-13733, 20553-20676, 20664-20824, 20553-20824, and 25844-25912 of a IRF5 nucleic acid having the nucleobase sequence of SEQ ID NO:2, wherein the nucleobase sequence of the modified oligonucleotide is complementary to SEQ ID NO: 2.
- 7A compound comprising a modified oligonucleotide 8 to 80 linked nucleosides in length, wherein the modified oligonucleotide has a nucleobase sequence comprising a 16 nucleobase portion complementary to an equal length portion of nucleobases 5567-5642, 5644-5731, 5567-5731, 5567-5620, 13697-13733, 20553-20676, 20664-20824, 20553-20824, and 25844-25912 of SEQ ID NO:2.
- 8A compound comprising a modified oligonucleotide 8 to 80 linked nucleosides in length, wherein the modified oligonucleotide has a nucleobase sequence comprising any one of SEQ ID NOs:168, 228, 717, 1340, 1270, 1272,and 1294.
- 9A compound comprising a modified oligonucleotide having a nucleobase sequence consisting of any one of SEQ ID NO:168, 228, 717, 1340, 1270, 1272, and 1294.
- 17Hie compound of any one of claims 1-16, wherein the modified oligonucleotide comprises:a gap segment consisting of linked deoxynucleosides;a 5’ wing segment consisting of linked nucleosides;and a 3’ wing segment consisting of linked nucleosides;wherein the gap segment is positioned immediately adjacent to and between the 5’ wing segment and the 3’ wing segment and wherein each nucleoside of each wing segment comprises a modified sugar.
- 25A compound comprising a modified oligonucleotide 16 linked nucleosides in length, wherein the modified oligonucleotide has a nucleobase sequence comprising any one of SEQ ID NOs:168, 228, 717, 1340, 1270, 1272, and 1294, wherein the modified oligonucleotide comprises: a gap segment consisting of linked deoxynucleosides;a 5’ wing segment consisting of linked nucleosides;and a 3’ wing segment consisting of linked nucleosides;wherein the gap segment is positioned between the 5’ wing segment and the 3’ wing segment and wherein each nucleoside of each wing segment comprises a modified sugar.
- 26A compound comprising or consisting of a modified oligonucleotide 12-30 linked nucleobases in length having a nucleobase sequence comprising the sequence recited in any one of SEQ ID NOs:228, 168, 1270, 1272, and 1294, wherein the modified oligonucleotide comprises a gap segment consisting of ten linked deoxynucleosides;a 5’ wing segment consisting of three linked nucleosides;and a 3’ wing segment consisting of three linked nucleosides;wherein the gap segment is positioned between the 5 ’ wing segment and the 3 ’ wing segment, wherein each nucleoside of each wing segment comprises a cEt sugar;wherein each intemucleoside linkage is a phosphorothioate linkage and wherein each cytosine is a 5-methylcytosine. In certain embodiments, the modified oligonucleotide consists of 16-30 linked nucleosides. In certain embodiments, the modified oligonucleotide consists of 16 linked nucleosides.
- 27A compound consisting of a modified oligonucleotide 16 linked nucleobases in length having a nucleobase sequence consists of the sequence recited in SEQ ID NO:228, wherein the modified oligonucleotide comprises a gap segment consisting of ten linked deoxynucleosides;a 5’ wing segment consisting of three linked nucleosides;and a 3’ wing segment consisting of three linked nucleosides;wherein the gap segment is positioned between the 5 ’ wing segment and the 3 ’ wing segment, wherein each nucleoside of each wing segment comprises a cEt sugar;wherein each intemucleoside linkage is a phosphorothioate linkage and wherein each cytosine is a 5-methylcytosine.
- 28A compound comprising or consisting of a modified oligonucleotide 12-30 linked nucleobases in length having a nucleobase sequence comprising the sequence recited in any one of SEQ ID NOs:717, wherein the modified oligonucleotide comprises a gap segment consisting of ten linked deoxynucleosides;a 5’ wing segment consisting of two linked nucleosides;and a 3’ wing segment consisting of four linked nucleosides;wherein the gap segment is positioned between the 5 ’ wing segment and the 3 ’ wing segment, wherein each of the nucleosides in the 5’ wing segment comprises a cEt sugar (kk);wherein the nucleosides of the 3’ wing segment comprise from 5’ to 3’ direction of a cEt sugar, a 2’-MOE sugar, a cEt sugar, and a 2’-MOE sugar (keke);wherein each intemucleoside linkage is a phosphorothioate linkage and wherein each cytosine is a 5-methylcytosine. In certain embodiments, the modified oligonucleotide consists of 16-30 linked nucleosides. In certain embodiments, the modified oligonucleotide consists of 16 linked nucleosides.
- 29A compound comprising or consisting of a modified oligonucleotide 12-30 linked nucleobases in length having a nucleobase sequence comprising the sequence recited in any one of SEQ ID NOs:717 and 1340, wherein the modified oligonucleotide comprises a gap segment consisting of nine linked deoxynucleosides;a 5’ wing segment consisting of two linked nucleosides;and a 3’ wing segment consisting of five linked nucleosides;wherein the gap segment is positioned between the 5’ wing segment and the 3’ wing segment, wherein each of the nucleosides in the 5’ wing segment comprises a cEt sugar (kk);wherein the nucleosides of the 3’ wing segment from 5’ to 3’ direction comprise a 2’-MOE sugar, a 2’-MOE sugar, a 2’-MOE sugar, a cEt sugar and a cEt sugar (eeekk);wherein each intemucleoside linkage is a phosphorothioate linkage and wherein each cytosine is a 5-methylcytosine. In certain embodiments, the modified oligonucleotide consists of 16-30 linked nucleosides. In certain embodiments, the modified oligonucleotide consists of 16 linked nucleosides.
- 30A compound having the following formula or salt thereof:
- 31A compound having the following formula:
- 35A composition comprising the compound or modified oligonucleotide of any one of claims 134 and a pharmaceutically acceptable carrier.
- 36A composition comprising a compound or modified oligonucleotide of any preceding claim, for use in therapy.
- 37A method of treating, preventing, or ameliorating a disease associated with IRF5 in an individual comprising administering to the individual a compound targeted to IRF5, thereby treating, preventing, or ameliorating the disease.
- 43The method of any of claims 38-42, wherein administering the compound inhibits or reduces inflammation in the gastrointestinal tract, diarrhea, pain, fatigue, abdominal cramping, blood in the stool, intestinal inflammation, disruption of the epithelial barrier of the gastrointestinal tract, dysbiosis, increased bowel frequency, tenesmus or painful spasms of the anal sphincter, constipation, or unintended weight loss in the individual.
- 44A method of inhibiting expression of IRF5 in a cell comprising contacting the cell with a compound targeted to IRF5, thereby inhibiting expression of IRF5 in the cell.
- 47A method of reducing or inhibiting reduces inflammation in the gastrointestinal tract, diarrhea, pain, fatigue, abdominal cramping, blood in the stool, intestinal inflammation, disruption of the epithelial barrier of the gastrointestinal tract, dysbiosis, increased bowel frequency, tenesmus or painful spasms of the anal sphincter, constipation, or unintended weight loss in an individual, comprising administering a compound targeted to IRF5 to the individual, thereby reducing or inhibiting reduces inflammation in the gastrointestinal tract, diarrhea, pain, fatigue, abdominal cramping, blood in the stool, intestinal inflammation, disruption of the epithelial barrier of the gastrointestinal tract, dysbiosis, increased bowel frequency, tenesmus or painful spasms of the anal sphincter, constipation, or unintended weight loss in the individual.
- 52Use of a compound targeted to IRF5 for treating, preventing, or ameliorating a disease associated with IRF5.
- 56Use of a compound targeted to IRF5 in the manufacture of a medicament for treating, preventing, or ameliorating a disease associated with IRF5.
Independent claims37
3,322 paragraphs in 3 sections, as filed
MODULATORS OF IRF5 EXPRESSION
Cross-Reference to Related Application
The present application claims priority to U.S. Provisional Patent Application No. 62/767,615, filed November 15, 2018, the disclosure of which is incorporated herein by reference in its entirety.
Sequence Listing
The present application is being filed along with a Sequence Listing in electronic format. The Sequence Listing is provided as a file entitled BIOL0341USLSEQ_ST25.txt created November 5, 2018, which is 324 kb in size. The information in the electronic format of the sequence listing is incorporated herein by reference in its entirety.
Field
The present embodiments provide methods, compounds, and compositions useful for inhibiting Interferon Regulatory Factor 5 (IRF5; Humirf5) expression, and in certain instances, reducing the amount of IRF5 protein in a cell or animal, which can be useful for treating, preventing, or ameliorating a disease associated with IRF5.
Background
Interferon Regulatory Factor 5 or IRF5 is an important regulator of inflammation and autoimmunity. There is a large body of evidence that links IRF5 risk alleles, which are associated with high expression, to the risk of autoimmune diseases, such as systemic lupus erythematosus, rheumatoid arthritis, systemic sclerosis, inflammatory bowel disease, and multiple sclerosis (Hedi and Abhaham, J. Immunol., 2012, 188: 5348-5356; Kristjansdottir et al., J. Med. Genet. 2008, 45: 362-369; Graham et al., Nature Genet. 2006, 38: 550-555; Graham et al., PNAS, 2007, 104: 6758-6763).
The current standard of medical care for Crohn’s disease and ulcerative colitis, the two major forms of inflammatory bowel disease in humans, involves treatment with anti-inflammatory agents, corticosteroids, immunomodulators, including azathioprine, or its active metabolite 6-mercaptopurine, methotrexate, biologic agents, including tumor necrosis factor antagonist therapies, anti-integrin therapies, and anti-interleukin (IL) 12/23 therapy. It is an object herein to provide compounds and compositions of high efficacy and tolerability for the treatment of diseases disclosed herein.
Summary
Certain embodiments provided herein are compounds and methods for reducing the amount or activity of IRF5 mRNA, and in certain embodiments, reducing the amount of IRF5 protein in a cell or individual. In certain embodiments, the individual has a gastrointestinal disease. In certain embodiments, the individual has an inflammatory bowel disease. In certain embodiments, the disease is Crohn’s disease. In certain embodiments, the disease is inflammatory bowel disease (IBD). In certain embodiments, the disease is ulcerative colitis. In certain embodiments, the disease is systemic lupus erythematosus (SLE). In certain embodiments, the disease is rheumatoid arthritis. In certain embodiments, the disease is primary biliary cirrhosis. In certain embodiments, the disease is systemic sclerosis. In certain embodiments, the disease is Sjogren’s syndrome. In certain embodiments, the disease is multiple sclerosis. In certain embodiments, the disease is scleroderma. In certain embodiments, the disease is interstitial lung disease (SSc-ILD). In certain embodiments, the disease is polycystic kidney disease (PKD). In certain embodiments, the disease is chronic kidney disease (CKD). In certain embodiments, the disease is NASH. In certain embodiments, the disease is liver fibrosis. In certain embodiments, the disease is asthma. In certain embodiments, the disease is severe asthma. Certain compounds provided herein are directed to compounds and compositions that reduce inflammation in an animal.
Certain embodiments provided herein are directed to potent and tolerable compounds and compositions useful for inhibiting IRF5 expression, which can be useful for treating, preventing, ameliorating, or slowing progression of an inflammatory disease. Certain embodiments provided herein are directed to compounds and compositions that are more potent or have greater therapeutic value than compounds publicly disclosed.
Detailed Description
It is to be understood that both the foregoing general description and the following detailed description are exemplary and explanatory only and are not restrictive of the embodiments, as claimed. Herein, the use of the singular includes the plural unless specifically stated otherwise. As used herein, the use of “or” means “and/or” unless stated otherwise. Furthermore, the use of the term “including” as well as other forms, such as “includes” and “included”, is not limiting.
The section headings used herein are for organizational purposes only and are not to be construed as limiting the subject matter described. All documents, or portions of documents, cited in this application, including, but not limited to, patents, patent applications, articles, books, treatises, and GenBank and NCBI reference sequence records are hereby expressly incorporated by reference for the portions of the document discussed herein, as well as in their entirety.
It is understood that the sequence set forth in each SEQ ID NO in the examples contained herein is independent of any modification to a sugar moiety, an intemucleoside linkage, or a nucleobase. As such, compounds defined by a SEQ ID NO may comprise, independently, one or more modifications to a sugar moiety, an intemucleoside linkage, or a nucleobase. Compounds described by ION number indicate a combination of nucleobase sequence, chemical modification, and motif.
Definitions
Unless otherwise indicated, the following terms have the following meanings:
“2’-deoxyfuranosyl sugar moiety” or “2’-deoxyfi1ranosyl sugar” means a furanosyl sugar moiety having two hydrogens at the 2’-position. 2’-deoxyfuranosyl sugar moieties may be unmodified or modified and may be substituted at positions other than the 2’-position or unsubstituted. A β-Ο-2’-deoxyribosyl sugar moiety in the context of an oligonucleotide is an unsubstituted, unmodified 2’-deoxyfi1ranosyl and is found in naturally occurring deoxyribonucleic acids (DNA).
“2’-deoxynucleoside” means a nucleoside comprising 2’-H(H) furanosyl sugar moiety, as found in naturally occurring deoxyribonucleic acids (DNA). In certain embodiments, a 2’-deoxynucleoside may comprise a modified nucleobase or may comprise an RNA nucleobase (uracil).
“2’-O-methoxyethyl” (also 2’-M0E) refers to a 2’-O(CH2)2־OCH3) in the place of the 2’-OH group of a ribosyl ring. A 2’-O-methoxyethyl modified sugar is a modified sugar.
“2’-M0E nucleoside” (also 2’-O-methoxyethyl nucleoside) means a nucleoside comprising a 2’-M0E modified sugar moiety.
“2’-substituted nucleoside” or “2-modified nucleoside” means a nucleoside comprising a 2’-substituted or 2’-modified sugar moiety. As used herein, “2’-substituted” or “2-modified” in reference to a sugar moiety means a sugar moiety comprising at least one 2'-substituent group other than H or OH.
“3’ target site” refers to the nucleotide of a target nucleic acid which is complementary to the 3’-most nucleotide of a particular compound.
“5’ target site” refers to the nucleotide of a target nucleic acid which is complementary to the 5’-most nucleotide of a particular compound.
“5-methylcytosine” means a cytosine with a methyl group attached to the 5 position.
“About” means within ±10% of a value. For example, if it is stated, “the compounds affected about 70% inhibition of PNPLA3”, it is implied that PNPLA3 levels are inhibited within a range of 60% and 80%.
Administration or administering refers to routes of introducing a compound or composition provided herein to an individual to perform its intended function. An example of a route of administration that can be used includes, but is not limited to parenteral administration, such as subcutaneous, intravenous, or intramuscular injection or infusion.
“Administered concomitantly” or “co-administration” means administration of two or more compounds in any manner in which the pharmacological effects of both are manifest in the patient. Concomitant administration does not require that both compounds be administered in a single pharmaceutical composition, in the same dosage form, by the same route of administration, or at the same time. The effects of both compounds need not manifest themselves at the same time. The effects need only be overlapping for a period of time and need not be coextensive. Concomitant administration or co-administration encompasses administration in parallel or sequentially.
“Amelioration” refers to an improvement or lessening of at least one indicator, sign, or symptom of an associated disease, disorder, or condition. In certain embodiments, amelioration includes a delay or slowing in the progression or severity of one or more indicators of a condition or disease. Hie progression or severity of indicators may be determined by subjective or objective measures, which are known to those skilled in the art.
“Animal” refers to a human or non-human animal, including, but not limited to, mice, rats, rabbits, dogs, cats, pigs, and non-human primates, including, but not limited to, monkeys and chimpanzees.
“Antisense activity” means any detectable and/or measurable activity attributable to the hybridization of an antisense compound to its target nucleic acid. In certain embodiments, antisense activity is a decrease in the amount or expression of a target nucleic acid or protein encoded by such target nucleic acid compared to target nucleic acid levels or target protein levels in the absence of the antisense compound to the target.
“Antisense compound” means a compound comprising an oligonucleotide and optionally one or more additional features, such as a conjugate group or terminal group. Examples of antisense compounds include single-stranded and double-stranded compounds, such as, oligonucleotides, ribozymes, siRNAs, shRNAs, ssRNAs, and occupancy-based compounds.
“Antisense inhibition” means reduction of target nucleic acid levels in the presence of an antisense compound complementary to a target nucleic acid compared to target nucleic acid levels in the absence of the antisense compound.
“Antisense mechanisms” are all those mechanisms involving hybridization of a compound with target nucleic acid, wherein the outcome or effect of the hybridization is either target degradation or target occupancy with concomitant stalling of the cellular machinery involving, for example, transcription or splicing.
“Antisense oligonucleotide” means an oligonucleotide having a nucleobase sequence that is complementary to a target nucleic acid or region or segment thereof. In certain embodiments, an antisense oligonucleotide is specifically hybridizable to a target nucleic acid or region or segment thereof.
“Bicyclic nucleoside” or “BNA” means a nucleoside comprising a bicyclic sugar moiety. “Bicyclic sugar” or “bicyclic sugar moiety” means a modified sugar moiety comprising two rings, wherein the second ring is formed via a bridge connecting two of the atoms in the first ring thereby forming a bicyclic structure. In certain embodiments, the first ring of the bicyclic sugar moiety is a furanosyl moiety. In certain embodiments, the bicyclic sugar moiety does not comprise a furanosyl moiety.
“ Branching group” means a group of atoms having at least 3 positions that are capable of forming covalent linkages to at least 3 groups. In certain embodiments, a branching group provides a plurality of reactive sites for connecting tethered ligands to an oligonucleotide via a conjugate linker and/or a cleavable moiety.
“Cell-targeting moiety” means a conjugate group or portion of a conjugate group that is capable of binding to a particular cell type or particular cell types.
“cEt” or “constrained ethyl” means a ribosyl bicyclic sugar moiety wherein the second ring of the bicyclic sugar is formed via a bridge connecting the 4’-carbon and the 2’-carbon, wherein the bridge has the formula: 4’-CH(CH3)-O-2’, and wherein the methyl group of the bridge is in the S configuration.
“cEt nucleoside” means a nucleoside comprising a cEt modified sugar moiety.
“Chemical modification” in a compound describes the substitutions or changes through chemical reaction, of any of the units in the compound relative to the original state of such unit. “Modified nucleoside” means a nucleoside having, independently, a modified sugar moiety and/or modified nucleobase. “Modified oligonucleotide” means an oligonucleotide comprising at least one modified intemucleoside linkage, a modified sugar, and/or a modified nucleobase.
“Chemically distinct region” refers to a region of a compound that is in some way chemically different than another region of the same compound. For example, a region having 2’-O-methoxyethyl nucleotides is chemically distinct from a region having nucleotides without 2’-O-methoxyethyl modifications.
“Chimeric antisense compounds” means antisense compounds that have at least 2 chemically distinct regions, each position having a plurality of subunits.
“Cleavable bond” means any chemical bond capable of being split. In certain embodiments, a cleavable bond is selected from among: an amide, a polyamide, an ester, an ether, one or both esters of a phosphodiester, a phosphate ester, a carbamate, a di-sulfide, or a peptide.
“Cleavable moiety” means a bond or group of atoms that is cleaved under physiological conditions, for example, inside a cell, an animal, or a human.
“Complementary” in reference to an oligonucleotide means the nucleobase sequence of such oligonucleotide or one or more regions thereof matches the nucleobase sequence of another oligonucleotide or nucleic acid or one or more regions thereof when the two nucleobase sequences are aligned in opposing directions. Nucleobase matches or complementary nucleobases, as described herein, are limited to the following pairs: adenine (A) and thymine (T), adenine (A) and uracil (U), cytosine (C) and guanine (G), and 5methyl cytosine (<sup>m</sup>C) and guanine (G) unless otherwise specified. Complementary oligonucleotides and/or nucleic acids need not have nucleobase complementarity at each nucleoside and may include one or more nucleobase mismatches. By contrast, “fully complementary” or “100% complementary” in reference to oligonucleotides means that such oligonucleotides have nucleobase matches at each nucleoside without any nucleobase mismatches.
“Conjugate group” means a group of atoms that is attached to an oligonucleotide. Conjugate groups include a conjugate moiety and a conjugate linker that attaches the conjugate moiety to the oligonucleotide.
“Conjugate linker” means a group of atoms comprising at least one bond that connects a conjugate moiety to an oligonucleotide.
“Conjugate moiety” means a group of atoms that is attached to an oligonucleotide via a conjugate linker.
Contiguous in the context of an oligonucleotide refers to nucleosides, nucleobases, sugar moieties, or intemucleoside linkages that are immediately adjacent to each other. For example, “contiguous nucleobases” means nucleobases that are immediately adjacent to each other in a sequence.
“Designing” or “Designed to” refer to the process of designing a compound that specifically hybridizes with a selected nucleic acid molecule.
“Diluent” means an ingredient in a composition that lacks pharmacological activity, but is pharmaceutically necessary or desirable. For example, the diluent in an injected composition can be a liquid, e.g. saline solution.
“Differently modified” means chemical modifications or chemical substituents that are different from one another, including absence of modifications. Thus, for example, a MOE nucleoside and an unmodified DNA nucleoside are “differently modified,” even though the DNA nucleoside is unmodified. Likewise, DNA and RNA are “differently modified,” even though both are naturally-occurring unmodified nucleosides. Nucleosides that are the same but for comprising different nucleobases are not differently modified. For example, a nucleoside comprising a 2’-0Me modified sugar and an unmodified adenine nucleobase and a nucleoside comprising a 2’-0Me modified sugar and an unmodified thymine nucleobase are not differently modified.
“Dose” means a specified quantity of a compound or pharmaceutical agent provided in a single administration, or in a specified time period. In certain embodiments, a dose may be administered in two or more boluses, tablets, or injections. For example, in certain embodiments, where subcutaneous<sub>=</sub>administration is desired, the desired dose may require a volume not easily accommodated by a single injection. In such embodiments, two or more injections may be used to achieve the desired dose. In certain embodiments, a dose may be administered in two or more injections to minimize injection site reaction in an individual. In other embodiments, the compound or pharmaceutical agent is administered by infusion over an extended period of time or continuously. Doses may be stated as the amount of pharmaceutical agent per hour, day, week or month.
“Dosing regimen” is a combination of doses designed to achieve one or more desired effects.
“Double-stranded antisense compound” means an antisense compound comprising two oligomeric compounds that are complementary to each other and form a duplex, and wherein one of the two said oligomeric compounds comprises an oligonucleotide.
“Effective amount” means the amount of compound sufficient to effectuate a desired physiological outcome in an individual in need of the compound. Hie effective amount may vary among individuals depending on the health and physical condition of the individual to be treated, the taxonomic group of the individuals to be treated, the formulation of the composition, assessment of the individual’s medical condition, and other relevant factors.
“Efficacy” means the ability to produce a desired effect.
“Expression” includes all the functions by which a gene’s coded information is converted into structures present and operating in a cell. Such structures include, but are not limited to, the products of transcription and translation.
“Gapmer” means an oligonucleotide comprising an internal region having a plurality of nucleosides that support RNase H cleavage positioned between external regions having one or more nucleosides, wherein the nucleosides comprising the internal region are chemically distinct from the nucleoside or nucleosides comprising the external regions. Hie internal region may be referred to as the “gap” and the external regions may be referred to as the “wings.” “Hybridization” means the annealing of oligonucleotides and/or nucleic acids. While not limited to a particular mechanism, the most common mechanism of hybridization involves hydrogen bonding, which may be Watson-Crick, Hoogsteen or reversed Hoogsteen hydrogen bonding, between complementary nucleobases. In certain embodiments, complementary nucleic acid molecules include, but are not limited to, an antisense compound and a nucleic acid target. In certain embodiments, complementary nucleic acid molecules include, but are not limited to, an oligonucleotide and a nucleic acid target.
“Immediately adjacent” means there are no intervening elements between the immediately adjacent elements of the same kind (e.g. no intervening nucleobases between the immediately adjacent nucleobases).
“Individual” means a human or non-human animal selected for treatment or therapy.
Inhibiting the expression or activity refers to a reduction or blockade of the expression or activity relative to the expression of activity in an untreated or control sample and does not necessarily indicate a total elimination of expression or activity.
“Intemucleoside linkage” means a group or bond that forms a covalent linkage between adjacent nucleosides in an oligonucleotide. “Modified intemucleoside linkage” means any intemucleoside linkage other than a naturally occurring, phosphate intemucleoside linkage. Non-phosphate linkages are referred to herein as modified intemucleoside linkages.
“IRF5” means any nucleic acid or protein of IRF5. “IRF5 nucleic acid” means any nucleic acid encoding IRF5. For example, in certain embodiments, an IRF5 nucleic acid includes a DNA sequence encoding IRF5, an RNA sequence transcribed from DNA encoding IRF5 (including genomic DNA comprising introns and exons), and an mRNA sequence encoding IRF5. “IRF5 mRNA” means an mRNA encoding a IRF5 protein. The target may be referred to in either upper or lower case.
“IRF5 specific inhibitor” refers to any agent capable of specifically inhibiting IRF5 RNA and/or IRF5 protein expression or activity at the molecular level. For example, IRF5 specific inhibitors include nucleic acids (including antisense compounds), peptides, antibodies, small molecules, and other agents capable of inhibiting the expression of IRF5 RNA and/or IRF5 protein.
“Lengthened oligonucleotides” are those that have one or more additional nucleosides relative to an oligonucleotide disclosed herein, e.g. a parent oligonucleotide.
“Linked nucleosides” means adjacent nucleosides linked together by an intemucleoside linkage.
“Linker-nucleoside” means a nucleoside that links an oligonucleotide to a conjugate moiety. Linkernucleosides are located within the conjugate linker of a compound. Linker-nucleosides are not considered part of the oligonucleotide portion of a compound even if they are contiguous with the oligonucleotide.
“Mismatch” or “non-complementary” means a nucleobase of a first oligonucleotide that is not complementary to the corresponding nucleobase of a second oligonucleotide or target nucleic acid when the first and second oligonucleotides are aligned. For example, nucleobases including but not limited to a universal nucleobase, inosine, and hypoxanthine, are capable of hybridizing with at least one nucleobase but are still mismatched or non-complementary with respect to nucleobase to which it hybridized. As another example, a nucleobase of a first oligonucleotide that is not capable of hybridizing to the corresponding nucleobase of a second oligonucleotide or target nucleic acid when the first and second oligonucleotides are aligned is a mismatch or non-complementary nucleobase.
“Modulating” refers to changing or adjusting a feature in a cell, tissue, organ or organism. For example, modulating IRF5 RNA can mean to increase or decrease the level of IRF5 RNA and/or IRF5 protein in a cell, tissue, organ or organism. A “modulator” effects the change in the cell, tissue, organ or organism. For example, an IRF5 compound can be a modulator that decreases the amount of IRF5 RNA and/or IRF5 protein in a cell, tissue, organ or organism.
“MOE” means methoxyethyl.
“Monomer” refers to a single unit of an oligomer. Monomers include, but are not limited to, nucleosides and nucleotides.
“Motif’ means the pattern of unmodified and/or modified sugar moieties, nucleobases, and/or intemucleoside linkages, in an oligonucleotide.
“Natural” or “naturally occurring” means found in nature.
“Non-bicyclic modified sugar” or “non-bicyclic modified sugar moiety” means a modified sugar moiety that comprises a modification, such as a substituent, that does not form a bridge between two atoms of the sugar to form a second ring.
“Nucleic acid” refers to molecules composed of monomeric nucleotides. A nucleic acid includes, but is not limited to, ribonucleic acids (RNA), deoxyribonucleic acids (DNA), single-stranded nucleic acids, and double-stranded nucleic acids.
“Nucleobase” means a heterocyclic moiety capable of pairing with a base of another nucleic acid. As used herein a “naturally occurring nucleobase” is adenine (A), thymine (T), cytosine (C), uracil (U), and guanine (G). A “modified nucleobase” is a naturally occurring nucleobase that is chemically modified. A “universal base” or “universal nucleobase” is a nucleobase other than a naturally occurring nucleobase and modified nucleobase, and is capable of pairing with any nucleobase.
“Nucleobase sequence” means the order of contiguous nucleobases in a nucleic acid or oligonucleotide independent of any sugar or intemucleoside linkage.
“Nucleoside” means a compound comprising a nucleobase and a sugar moiety. The nucleobase and sugar moiety are each, independently, unmodified or modified. “Modified nucleoside” means a nucleoside comprising a modified nucleobase and/or a modified sugar moiety. Modified nucleosides include abasic nucleosides, which lack a nucleobase.
“Oligomeric compound” means a compound comprising a single oligonucleotide and, optionally, one or more additional features, such as a conjugate group or terminal group.
“Oligonucleotide” means a polymer of linked nucleosides each of which can be modified or unmodified, independent one from another. Unless otherwise indicated, oligonucleotides consist of 8-80 linked nucleosides. “Modified oligonucleotide” means an oligonucleotide, wherein at least one sugar, nucleobase, or intemucleoside linkage is modified. “Unmodified oligonucleotide” means an oligonucleotide that does not comprise any sugar, nucleobase, or intemucleoside modification.
“Parent oligonucleotide” means an oligonucleotide whose sequence is used as the basis of design for more oligonucleotides of similar sequence but with different lengths, motifs, and/or chemistries. The newly designed oligonucleotides may have the same or overlapping sequence as the parent oligonucleotide.
“Parenteral administration” means administration through injection or infusion. Parenteral administration includes subcutaneous administration, intravenous administration, intramuscular administration, intraarterial administration, intraperitoneal administration, or intracranial administration, e.g. intrathecal or intracerebroventricular administration.
“Pharmaceutically acceptable carrier or diluent” means any substance suitable for use in administering to an individual. For example, a pharmaceutically acceptable carrier can be a sterile aqueous solution, such as PBS or water-for-injection.
“Pharmaceutically acceptable salts” means physiologically and pharmaceutically acceptable salts of compounds, such as oligomeric compounds or oligonucleotides, i.e., salts that retain the desired biological activity of the parent compound and do not impart undesired toxicological effects thereto.
“Pharmaceutical agent” means a compound that provides a therapeutic benefit when administered to an individual.
“Pharmaceutical composition” means a mixture of substances suitable for administering to an individual. For example, a pharmaceutical composition may comprise one or more compounds or salt thereof and a sterile aqueous solution.
“Phosphorothioate linkage” means a modified phosphate linkage in which one of the non-bridging oxygen atoms is replaced with a sulfur atom. A phosphorothioate intemucleoside linkage is a modified intemucleoside linkage.
“Phosphorus moiety” means a group of atoms comprising a phosphorus atom. In certain embodiments, a phosphorus moiety comprises a mono-, di-, or tri-phosphate, or phosphorothioate.
“Portion” means a defined number of contiguous (i.e., linked) nucleobases of a nucleic acid. In certain embodiments, a portion is a defined number of contiguous nucleobases of a target nucleic acid. In certain embodiments, a portion is a defined number of contiguous nucleobases of an oligomeric compound.
“Prevent” refers to delaying or forestalling the onset, development or progression of a disease, disorder, or condition for a period of time from minutes to indefinitely.
“Prodrug” means a compound in a form outside the body which, when administered to an individual, is metabolized to another form within the body or cells thereof. In certain embodiments, the metabolized form is the active, or more active, form of the compound (e.g., drug). Typically conversion of a prodrug within the body is facilitated by the action of an enzyme(s) (e.g., endogenous or viral enzyme) or chemical(s) present in cells or tissues, and/or by physiologic conditions.
“Reduce” means to bring down to a smaller extent, size, amount, or number.
“RefSeq No.” is a unique combination of letters and numbers assigned to a sequence to indicate the sequence is for a particular target transcript (e.g., target gene). Such sequence and information about the target gene (collectively, the gene record) can be found in a genetic sequence database. Genetic sequencejiatabases 10 include the NCBI Reference Sequence database, GenBank, the European Nucleotide Archive, and the DNA Data Bank of Japan (the latter three forming the International Nucleotide Sequence Database Collaboration or INSDC).
“Region” is defined as a portion of the target nucleic acid having at least one identifiable structure, function, or characteristic.
“RNAi compound” means an antisense compound that acts, at least in part, through RISC or Ag02, but not through RNase H, to modulate a target nucleic acid and/or protein encoded by a target nucleic acid. RNAi compounds include, but are not limited to double-stranded siRNA, single-stranded RNA (ssRNA), and microRNA, including microRNA mimics.
“Segments” are defined as smaller or sub-portions of regions within a nucleic acid.
“Side effects” means physiological disease and/or conditions attributable to a treatment other than the desired effects. In certain embodiments, side effects include injection site reactions, liver function test abnormalities, renal function abnormalities, liver toxicity, renal toxicity, central nervous system abnormalities, myopathies, and malaise. For example, increased aminotransferase levels in serum may indicate liver toxicity or liver function abnormality. For example, increased bilirubin may indicate liver toxicity or liver function abnormality.
“Single-stranded” in reference to a compound means the compound has only one oligonucleotide.
“Self-complementary” means an oligonucleotide that at least partially hybridizes to itself. A compound consisting of one oligonucleotide, wherein the oligonucleotide of the compound is selfcomplementary, is a single-stranded compound. A single-stranded compound may be capable of binding to a complementary compound to form a duplex.
“Sites” are defined as unique nucleobase positions within a target nucleic acid.
“Specifically hybridizable” refers to an oligonucleotide having a sufficient degree of complementarity between the oligonucleotide and a target nucleic acid to induce a desired effect, while exhibiting minimal or no effects on non-target nucleic acids. In certain embodiments, specific hybridization occurs under physiological conditions.
“Specifically inhibit” with reference to a target nucleic acid means to reduce or block expression of the target nucleic acid while exhibiting fewer, minimal, or no effects on non-target nucleic acids. Reduction does not necessarily indicate a total elimination of the target nucleic acid’s expression.
“Standard cell assay” means assay(s) described in the Examples and reasonable variations thereof.
“Standard in vivo experiment” means the procedure(s) described in the Example(s) and reasonable variations thereof.
“Stereorandom chiral center” in the context of a population of molecules of identical molecular formula means a chiral center having a random stereochemical configuration. For example, in a population of molecules comprising a stereorandom chiral center, the number of molecules having the (.S') configuration of the stereorandom chiral center may be but is not necessarily the same as the number of molecules having the (R) configuration of the stereorandom chiral center. The stereochemical configuration of a chiral center is considered random when it is the result of a synthetic method that is not designed to control the stereochemical configuration. In certain embodiments, a stereorandom chiral center is a stereorandom phosphorothioate intemucleoside linkage.
“Sugar moiety” means an unmodified sugar moiety or a modified sugar moiety. As used herein, “unmodified sugar moiety” means a β-D-ribosyl moiety, as found in naturally occurring RNA, or a β-Ο-2’deoxyribosyl sugar moiety as found in naturally occurring DNA. As used herein, “modified sugar moiety” or “modified sugar” means a sugar surrogate or a furanosyl sugar moiety other than a β-D-ribosyl or a β-Ο-2'deoxyribosyl. Modified furanosyl sugar moieties may be modified or substituted at a certain position(s) of the sugar moiety, substituted, or unsubstituted, and they may or may not have a stereoconfiguration other than βD-ribosyl. Modified furanosyl sugar moieties include bicyclic sugars and non-bicyclic sugars.
“Sugar surrogate means a modified sugar moiety that does not comprise a furanosyl or tetrahydrofuranyl ring (is not a “furanosyl sugar moiety”) and that can link a nucleobase to another group, such as an intemucleoside linkage, conjugate group, or terminal group in an oligonucleotide. Modified nucleosides comprising sugar surrogates can be incorporated into one or more positions within an oligonucleotide and such oligonucleotides are capable of hybridizing to complementary oligomeric compounds or nucleic acids.
“Synergy” or “synergize” refers to an effect of a combination that is greater than additive of the effects of each component alone at the same doses.
“Target gene” refers to a gene encoding a target.
“Targeting” means the specific hybridization of a compound to a target nucleic acid in order to induce a desired effect.
“Target nucleic acid,” “target RNA,” “target RNA transcript” and “nucleic acid target” all mean a nucleic acid capable of being targeted by compounds described herein.
“Target region” means a portion of a target nucleic acid to which one or more compounds is targeted.
“Target segment” means the sequence of nucleotides of a target nucleic acid to which a compound is targeted. “5’ target site” refers to the 5’-most nucleotide of a target segment. “3’ target site” refers to the 3’most nucleotide of a target segment.
“Terminal group” means a chemical group or group of atoms that is covalently linked to a terminus of an oligonucleotide.
“Therapeutically effective amount” means an amount of a compound, pharmaceutical agent, or composition that provides a therapeutic benefit to an individual.
“Treat” refers to administering a compound or pharmaceutical composition to an animal in order to effect an alteration or improvement of a disease, disorder, or condition in the animal.
Certain Embodiments
Certain embodiments provide methods, compounds and compositions for inhibiting Interferon Regulatory Factor 5 (IRF5) expression.
Certain embodiments provide compounds targeted to an IRF5 nucleic acid. In certain embodiments, the IRF5 nucleic acid has the sequence set forth in RefSeq or GENBANK Accession No. U51127.1 (incorporated by reference, disclosed herein as SEQ ID NO: 4); GENBANK Accession No. NT_007933.14 truncated from nucleotides 53761170 to 53774065 (incorporated by reference, disclosed herein as SEQ ID NO: 2); GENBANK Accession No. DC427600.1 (incorporated by reference, disclosed herein as SEQ ID NO: 5); GENBANK Accession No. NM_001098627.3 (incorporated by reference, disclosed herein as SEQ ID NO: 1); GENBANK Accession No. NM_001098629.2 (incorporated by reference, disclosed herein as SEQ ID NO: 3); GENBANK Accession No. NM_001098630.2 (incorporated by reference, disclosed herein as SEQ ID NO: 6); GENBANK Accession No. NM_001242452.2 (incorporated by reference, disclosed herein as SEQ ID NO: 7); GENBANK Accession No. NM_032643.4 (incorporated by reference, disclosed herein as SEQ ID NO: 8); and GENBANK Accession No. NC_000007.14 truncated from nucleotides 128935001 to 128953000 (incorporated by reference, disclosed herein as SEQ ID NO: 9). In certain embodiments, the compound is an antisense compound or oligomeric compound. In certain embodiments, the compound is single-stranded. In certain embodiments, the compound is double-stranded.
In certain embodiments, the compound comprises a modified oligonucleotide 16 linked nucleosides in length. In certain embodiments, the compound is an antisense compound or oligomeric compound.
Certain embodiments provide a compound comprising a modified oligonucleotide 12 to 30 linked nucleosides in length and having a nucleobase sequence comprising the nucleobase sequence of any one of SEQ ID NOs: 37-1356. In certain embodiments, the compound is an antisense compound or oligomeric compound. In certain embodiments, the compound is single-stranded. In certain embodiments, the compound is double-stranded. In certain embodiments, the modified oligonucleotide is 16 to 30 linked nucleosides in length.
Certain embodiments provide a compound comprising a modified oligonucleotide consisting of the nucleobase sequence of any one of SEQ ID NOs: 37-1356. In certain embodiments, the compound is an antisense compound or oligomeric compound. In certain embodiments, the compound is single-stranded.|In certain embodiments, the compound is double-stranded.
Certain embodiments provide a compound comprising a modified oligonucleotide 12 to 30 linked nucleosides in length and complementary within nucleobases 4366-4381, 5141-5156, 5140-5160, 5179-5194, 11544-11559, 11542-11596, 11736-11751, 11737-11752, 11720-11790, or 11794-11809 of SEQ ID NO: 2, wherein said modified oligonucleotide is at least 85%, at least 90%, at least 95%, or 100% complementary to SEQ ID NO: 2. In certain embodiments, the compound is an antisense compound or oligomeric compound. In certain embodiments, the compound is single-stranded. In certain embodiments, the compound is doublestranded. In certain embodiments, the modified oligonucleotide is 16 to 30 linked nucleosides in length.
In certain embodiments, compounds target nucleotides 11737-11752 0fanIRF5 nucleic acid. In certain embodiments, compounds target within nucleotides 4366-4381, 5141-5156, 5140-5160, 5179-5194, 1154411559, 11542-11596, 11736-11751, 11737-11752, 11720-11790, or 11794-11809 of an IRF5 nucleic acid having the nucleobase sequence of SEQ ID NO: 2. In certain embodiments, compounds have at least an 8, 9, 10, 11, 12, 13, 14, 15, or 16 contiguous nucleobase portion complementary to an equal length portion within nucleotides 4366-4381,5141-5156, 5140-5160, 5179-5194, 11544-11559, 11542-11596, 11736-11751, 11737
11752, 11720-11790, or 11794-11809 of an IRF5 nucleic acid having the nucleobase sequence of SEQ ID NO: 2. In certain embodiments, these compounds are antisense compounds, oligomeric compounds, or oligonucleotides.
In certain embodiments, a compound comprises a modified oligonucleotide 12 to 30 linked nucleosides in length and having a nucleobase sequence comprising at least an 8, 9, 10, 11, 12, 13, 14, 15, or 16 contiguous nucleobase portion any one of SEQ ID NOs: 168, 228, 717, 1340, 1270, 1272, and 1294. In certain embodiments, the modified oligonucleotide is 16 to 30 linked nucleosides in length.
In certain embodiments, a compound comprises a modified oligonucleotide 12 to 30 linked nucleosides in length and having a nucleobase sequence comprising any one of SEQ ID NOs: 228, 168, 717, 1340, 1270, 1272, and 1294. In certain embodiments, the modified oligonucleotide is 16 to 30 linked nucleosides in length.
In certain embodiments, a compound comprises a modified oligonucleotide having a nucleobase sequence consisting of any one of SEQ ID NOs: 228, 168, 717, 1340, 1270, 1272, and 1294.
In certain embodiments, compounds targeted to IRF5 are ION 729018, 728958, 785525, 785674, 785675, 786503, 786524, and 786548. Out of over 1,320 compounds that were screened as described in the Examples section below, ION 729018, 728958, 785525, 785674, 785675, 786503, 786524, and 786548 emerged as the top lead compounds. In particular, ION 729018 exhibited significant efficacy and tolerability out of over 1,320 compounds.
In certain embodiments, any of the foregoing modified oligonucleotides comprises at least one modified intemucleoside linkage, at least one modified sugar, and/or at least one modified nucleobase.
In certain embodiments, any of the foregoing modified oligonucleotides comprises at least one modified sugar. In certain embodiments, at least one modified sugar comprises a 2’-O-methoxyethyl group. In certain embodiments, at least one modified sugar is a bicyclic sugar, such as a 4’-CH(CH3)-O-2’ group, a 4’CH2-O-2’ group, or a 4’-(CH2)2-O-2’group.
In certain embodiments, the modified oligonucleotide comprises at least one modified intemucleoside linkage, such as a phosphorothioate intemucleoside linkage.
In certain embodiments, any of the foregoing modified oligonucleotides comprises at least one modified nucleobase, such as 5-methylcytosine.
In certain embodiments, any of the foregoing modified oligonucleotides comprises:
a gap segment consisting of linked deoxynucleosides;
a 5’ wing segment consisting of linked nucleosides; and a 3’ wing segment consisting of linked nucleosides;
wherein the gap segment is positioned between the 5 ’ wing segment and the 3 ’ wing segment and wherein each nucleoside of each wing segment comprises a modified sugar. In certain embodiments, the modified oligonucleotide is 12 to 30 linked nucleosides in length having a nucleobase sequence comprising the sequence recited in any one of SEQ ID NOs: 228, 168, 717, 1340, 1270, 1272, and 1294. In certain embodiments, the modified oligonucleotide is 16 to 30 linked nucleosides in length having a nucleobase sequence comprising the sequence recited in any one of SEQ ID NOs: 228, 168, 717, 1340, 1270, 1272, and 1294. In certain embodiments, the modified oligonucleotide is 16 linked nucleosides in length having a nucleobase sequence consisting of the sequence recited in any one of SEQ ID NOs: 228, 168, 717, 1340, 1270, 1272, and 1294.
In certain embodiments, a compound comprises or consists of a modified oligonucleotide 12-30 linked nucleobases in length having a nucleobase sequence comprising the sequence recited in any one of SEQ ID NOs: 228, 168, 1270, 1272, and 1294, wherein the modified oligonucleotide comprises a gap segment consisting of ten linked deoxynucleosides;
a 5’ wing segment consisting of three linked nucleosides; and a 3’ wing segment consisting of three linked nucleosides;
wherein the gap segment is positioned between the 5 ’ wing segment and the 3 ’ wing segment, wherein each nucleoside of each wing segment comprises a cEt sugar; wherein each intemucleoside linkage is a phosphorothioate linkage and wherein each cytosine is a 5-methylcytosine. In certain embodiments, the modified oligonucleotide consists of 16-30 linked nucleosides. In certain embodiments, the modified oligonucleotide consists of 16 linked nucleosides.
In certain embodiments, a compound consists of a modified oligonucleotide 16 linked nucleobases in length having a nucleobase sequence consists of the sequence recited in SEQ ID NO: 228, wherein the modified oligonucleotide comprises a gap segment consisting of ten linked deoxynucleosides;
a 5’ wing segment consisting of three linked nucleosides; and a 3’ wing segment consisting of three linked nucleosides;
wherein the gap segment is positioned between the 5 ’ wing segment and the 3 ’ wing segment, wherein each nucleoside of each wing segment comprises a cEt sugar; wherein each intemucleoside linkage is a phosphorothioate linkage and wherein each cytosine is a 5-methylcytosine.
In certain embodiments, a compound comprises or consists of a modified oligonucleotide 12-30 linked nucleobases in length having a nucleobase sequence comprising the sequence recited in any one of SEQ ID NOs: 717, wherein the modified oligonucleotide comprises a gap segment consisting of ten linked deoxynucleosides;
a 5’ wing segment consisting of two linked nucleosides; and a 3’ wing segment consisting of four linked nucleosides;
wherein the gap segment is positioned between the 5’ wing segment and the 3’ wing segment, wherein each of the nucleosides in the 5’ wing segment comprises a cEt sugar (kk); wherein the nucleosides of the 3’ wing segment comprise from 5’ to 3’ direction of a cEt sugar, a 2’-MOE sugar, a cEt sugar, and a 2’-MOE sugar (keke); wherein each intemucleoside linkage is a phosphorothioate linkage and wherein each cytosine is a 5methylcytosine. In certain embodiments, the modified oligonucleotide consists of 16-30 linked nucleosides. In certain embodiments, the modified oligonucleotide consists of 16 linked nucleosides.
In certain embodiments, a compound comprises or consists of a modified oligonucleotide 12-30 linked nucleobases in length having a nucleobase sequence comprising the sequence recited in any one of SEQ ID NOs: 717 and 1340, wherein the modified oligonucleotide comprises a gap segment consisting of nine linked deoxynucleosides;
a 5’ wing segment consisting of two linked nucleosides; and a 3’ wing segment consisting of five linked nucleosides;
wherein the gap segment is positioned between the 5’ wing segment and the 3’ wing segment, wherein each of the nucleosides in the 5’ wing segment comprises a cEt sugar (kk); wherein the nucleosides of the 3’ wing segment from 5’ to 3’ direction comprise a 2’-MOE sugar, a 2’-MOE sugar, a 2’-MOE sugar, a cEt sugar and a cEt sugar (eeekk); wherein each intemucleoside linkage is a phosphorothioate linkage and wherein each cytosine is a 5-methylcytosine. In certain embodiments, the modified oligonucleotide consists of 16-30 linked nucleosides. In certain embodiments, the modified oligonucleotide consists of 16 linked nucleosides.
In certain embodiments, a compound comprises or consists of ION 729018 or salt thereof, having the following chemical structure:
<img file="IL283072A_D0001.tif" />
In certain embodiments, a compound comprises or consists of the sodium salt of ION 729018, having the following chemical structure:
<img file="IL283072A_D0002.tif" />
In any of the foregoing embodiments, the compound or oligonucleotide can be at least 85%, at least
90%, at least 95%, at least 98%, at least 99%, or 100% complementary to a nucleic acid encoding IRF5.
In any of the foregoing embodiments, the compound can be single-stranded. In certain embodiments, the compound comprises deoxyribonucleotides. In certain embodiments, the compound is double-stranded. In certain embodiments, the compound is double-stranded and comprises ribonucleotides. In any of the foregoing embodiments, the compound can be an antisense compound or oligomeric compound.
In any of the foregoing embodiments, the compound can be 8 to 80, 10 to 30, 12 to 50, 13 to 30, 13 to
50, 14 to 30, 14 to 50, 15 to 30, 15 to 50, 16 to 30, 16 to 50, 17 to 30, 17 to 50, 18 to 22, 18 to 24, 18 to 30, 18 to 50, 19 to 22, 19 to 30, 19 to 50, or 20 to 30 linked nucleosides in length. In certain embodiments, the compound comprises or consists of an oligonucleotide.
In certain embodiments, compounds or compositions provided herein comprise a pharmaceutically acceptable salt of the modified oligonucleotide. In certain embodiments, the salt is a sodium salt. In certain embodiments, the salt is a potassium salt.
In certain embodiments, the compounds or compositions as described herein are active by virtue of having at least one of an in vitro IC50 of less than 2 μΜ, less than 1.5 μΜ, less than 1 pM, less than 0.9 pM, less than 0.8 pM, less than 0.7 pM, less than 0.6 pM, less than 0.5 pM, less than 0.4 pM, less than 0.3 pM, less than 0.2 pM, less than 0.1 pM, less than 0.05 pM, less than 0.04 pM, less than 0.03 pM, less than 0.02 pM, or less than 0.01 pM.
In certain embodiments, the compounds or compositions as described herein are highly tolerable as demonstrated by having at least one of an increase in alanine transaminase (ALT) or aspartate transaminase (AST) value of no more than 4 fold, 3 fold, or 2 fold over control animals, or an increase in liver, spleen, or kidney weight of no more than 30%, 20%, 15%, 12%, 10%, 5%, or 2% compared to control animals. In certain embodiments, the compounds or compositions as described herein are highly tolerable as demonstrated by having no increase of ALT or AST over control animals. In certain embodiments, the compounds or compositions as described herein are highly tolerable as demonstrated by having no increase in liver, spleen, or kidney weight over control animals.
Certain embodiments provide a composition comprising the compound of any of the aforementioned embodiments or any pharmaceutically acceptable salt thereof and at least one of a pharmaceutically acceptable carrier or diluent. In certain embodiments, the composition has a viscosity less than about 40 centipoise (cP), less than about 30 centipose (cP), less than about 20 centipose (cP), less than about 15 centipose (cP), or less than about 10 centipose (cP). In certain embodiments, the composition having any of the aforementioned viscosities comprises a compound provided herein at a concentration of about 100 mg/mL, about 125 mg/mL, about 150 mg/mL, about 175 mg/mL, about 200 mg/mL, about 225 mg/mL, about 250 mg/mL, about 275 mg/mL, or about 300 mg/mL. In certain embodiments, the composition having any of the aforementioned viscosities and/or compound concentrations has a temperature of room temperature, or about 20°C, about 21°C, about 22°C, about 23°C, about 24°C, about 25°C, about 26°C, about 27°C, about 28°C, about 29°C, or about 30°C.
Certain Indications
Certain embodiments provided herein relate to methods of inhibiting IRF5 expression, which can be useful for treating, preventing, or ameliorating a disease associated with IRF5 in an individual, by administration of a compound that targets IRF5. In certain embodiments, the compound can be a IRF5 specific inhibitor. In certain embodiments, the compound can be an antisense compound, an oligomeric compound, or an oligonucleotide targeted to IRF5.
Examples of diseases associated with IRF5 treatable, preventable, and/or ameliorable with the methods provided herein include inflammatory bowel disease (IBD), ulcerative colitis, Crohn’s disease, systemic lupus erythematosus (SLE), rheumatoid arthritis, primary biliary cirrhosis, systemic sclerosis, Sjogren’s syndrome, multiple sclerosis, scleroderma, interstitial lung disease (SSc-ILD), polycystic kidney disease (PKD), chronic kidney disease (CKD), NASH, liver fibrosis, asthma, and severe asthma. Certain compounds provided herein are directed to compounds and compositions that reduce inflammation, cirrhosis, fibrosis, proteinuria, joint inflammation, autoantibody production, inflammatory cell infiltration, collagen deposits, or inflammatory cytokine production in an individual. Certain compounds provided herein are directed to compounds and compositions that reduce inflammation in the gastrointestinal tract, diarrhea, pain, fatigue, abdominal cramping, blood in the stool, intestinal inflammation, disruption of the epithelial barrier of the gastrointestinal tract, dysbiosis, increased bowel frequency, tenesmus or painful spasms of the anal sphincter, constipation, or unintended weight loss in an individual, comprising administering a compound targeted to IRF5 to the individual, thereby reducing or inhibiting reduces inflammation in the gastrointestinal tract, diarrhea, pain, fatigue, abdominal cramping, blood in the stool, intestinal inflammation, disruption of the epithelial barrier of the gastrointestinal tract, dysbiosis, increased bowel frequency, tenesmus or painful spasms of the anal sphincter, constipation, or unintended weight loss in an individual.
In certain embodiments, a method of treating, preventing, or ameliorating a disease associated with IRF5 in an individual comprises administering to the individual a compound comprising a IRF5 specific inhibitor, thereby treating, preventing, or ameliorating the disease. In certain embodiments, the individual is identified as having, or at risk of having, a disease associated with IRF5. In certain embodiments, the disease is an inflammatory disease. In certain embodiments, the disease is an gastrointestinal disease. In certain embodiments, the gastrointestinal disease is ulcerative colitis or Crohn’s disease. In certain embodiments, the compound comprises an antisense compound targeted to IRF5. In certain embodiments, the compound comprises an oligonucleotide targeted to IRF5. In certain embodiments, a compound comprises a modified oligonucleotide 12 to 30 linked nucleosides in length and having a nucleobase sequence comprising at least 8 contiguous nucleobases of any of the nucleobase sequences of SEQ ID NOs: 37-1356. In certain embodiments, a compound comprises a modified oligonucleotide 12 to 30 linked nucleosides in length and having a nucleobase sequence comprising the nucleobase sequence of any one of SEQ ID NOs: 37-1356. In certain embodiments, a compound comprises a modified oligonucleotide consisting of the nucleobase sequence of any one of SEQ ID NOs: 37-1356. In certain embodiments, a compound comprises a modified oligonucleotide 16 to 30 linked nucleosides in length having a nucleobase sequence comprising any one of SEQ ID NOs: 228, 168, 717, 1340, 1270, 1272, and 1294. In certain embodiments, a compound comprises a modified oligonucleotide having a nucleobase sequence consisting of any one of SEQ ID NOs: 228, 168, 717, 1340, 1270, 1272, and 1294. In certain embodiments, the compound is ION 729018, 728958, 785525, 785674, 785675, 786503, 786524, or 786548. In any of the foregoing embodiments, the compound can be singlestranded or double-stranded. In any of the foregoing embodiments, the compound can be an antisense compound or oligomeric compound. In certain embodiments, the compound is administered to the individual parenterally. In certain embodiments, administering the compound improves, preserves, or prevents inflammation, cirrhosis, fibrosis, proteinuria, joint inflammation, autoantibody production, inflammatory cell infiltration, collagen deposits, or inflammatory cytokine production in an animal.
In certain embodiments, a method of treating, preventing, or ameliorating inflammation, cirrhosis, fibrosis, proteinuria, joint inflammation, autoantibody production, inflammatory cell infiltration, collagen deposits, or inflammatory cytokine production in an animal comprises administering to the individual a compound comprising a IRF5 specific inhibitor, thereby treating, preventing, or ameliorating inflammation, cirrhosis, fibrosis, proteinuria, joint inflammation, autoantibody production, inflammatory cell infiltration, collagen deposits, or inflammatory cytokine production. In certain embodiments, a method of treating, preventing, or ameliorating inflammation in the gastrointestinal tract, diarrhea, pain, fatigue, abdominal cramping, blood in the stool, intestinal inflammation, disruption of the epithelial barrier of the gastrointestinal tract, dysbiosis, increased bowel frequency, tenesmus or painful spasms of the anal sphincter, constipation, or unintended weight loss in an individual, comprising administering a compound targeted to IRF5 to the individual, thereby reducing or inhibiting reduces inflammation in the gastrointestinal tract, diarrhea, pain, fatigue, abdominal cramping, blood in the stool, intestinal inflammation, disruption of the epithelial barrier of the gastrointestinal tract, dysbiosis, increased bowel frequency, tenesmus or painful spasms of the anal sphincter, constipation, or unintended weight loss. In certain embodiments, the compound comprises an antisense compound targeted to IRF5. In certain embodiments, the compound comprises an oligonucleotide targeted to IRF5. In certain embodiments, a compound comprises a modified oligonucleotide 12 to 30 linked nucleosides in length and having a nucleobase sequence comprising at least 8 contiguous nucleobases of any of the nucleobase sequences of SEQ ID NOs: 37-1356. In certain embodiments, a compound comprises a modified oligonucleotide 12 to 30 linked nucleosides in length and having a nucleobase sequence comprising the nucleobase sequence of any one of SEQ ID NOs: 37-1356. In certain embodiments, a compound comprises a modified oligonucleotide consisting of the nucleobase sequence of any one of SEQ ID NOs: 37-1356. In certain embodiments, a compound comprises a modified oligonucleotide 16 to 30 linked nucleosides in length having a nucleobase sequence comprising any one of SEQ ID NOs: 228, 168, 717, 1340, 1270, 1272, and 1294. In certain embodiments, a compound comprises a modified oligonucleotide having a nucleobase sequence consisting of any one of SEQ ID NOs: 228, 168, 717, 1340, 1270, 1272, and 1294. In certain embodiments, the compound is ION 729018, 728958, 785525, 785674, 785675, 786503, 786524, or 786548. In any of the foregoing embodiments, the compound can be single-stranded or double-stranded. In any of the foregoing embodiments, the compound can be an antisense compound or oligomeric compound. In certain embodiments, the compound is administered to the individual parenterally. In certain embodiments, administering the compound improves, preserves, or prevents inflammation, cirrhosis, fibrosis, proteinuria, joint inflammation, autoantibody production, inflammatory cell infiltration, collagen deposits, or inflammatory cytokine production. In certain embodiments, administering the compound improves, preserves, or prevents inflammation in the gastrointestinal tract, diarrhea, pain, fatigue, abdominal cramping, blood in the stool, intestinal inflammation, disruption of the epithelial barrier of the gastrointestinal tract, dysbiosis, increased bowel frequency, tenesmus or painful spasms of the anal sphincter, constipation, or unintended weight loss in an individual. In certain embodiments, the individual is identified as having, or at risk of having, a disease associated with IRF5.
In certain embodiments, a method of inhibiting expression of IRF5 in an individual having, or at risk of having, a disease associated with IRF5 comprises administering to the individual a compound comprising a IRF5 specific inhibitor, thereby inhibiting expression of IRF5 in the individual. In certain embodiments, administering the compound inhibits expression of IRF5 in the gastrointestinal tract. In certain embodiments, administering the compound inhibits expression of IRF5 in the liver. In certain embodiments, administering the compound inhibits expression of IRF5 in the lungs. In certain embodiments, administering the compound inhibits expression of IRF5 in the kidneys. In certain embodiments, administering the compound inhibits expression of IRF5 in the joints. In certain embodiments, the disease is an inflammatory disease. In certain embodiments, the disease is a gastrointestinal disease. In certain embodiments, the gastrointestinal disease is ulcerative colitis or Crohn’s disease. In certain embodiments, the individual has, or is at risk of having, inflammatory bowel disease (IBD), systemic lupus erythematosus (SLE), rheumatoid arthritis, primary biliary cirrhosis, systemic sclerosis, Sjogren’s syndrome, multiple sclerosis, scleroderma, interstitial lung disease (SSc-ILD), polycystic kidney disease (PKD), chronic kidney disease (CKD), NASH, liver fibrosis, asthma, or severe asthma. In certain embodiments, the individual has, or is at risk of having, inflammation, cirrhosis, fibrosis, proteinuria, joint inflammation, autoantibody production, inflammatory cell infiltration, collagen deposits, or inflammatory cytokine production. In certain embodiments, the individual has, or is at risk of having, inflammation in the gastrointestinal tract, diarrhea, pain, fatigue, abdominal cramping, blood in the stool, intestinal inflammation, disruption of the epithelial barrier of the gastrointestinal tract, dysbiosis, increased bowel frequency, tenesmus or painful spasms of the anal sphincter, constipation, or unintended weight loss. In certain embodiments, the compound comprises an antisense compound targeted to IRF5. In certain embodiments, the compound comprises an oligonucleotide targeted to IRF5. In certain embodiments, a compound comprises a modified oligonucleotide 12 to 30 linked nucleosides in length and having a nucleobase sequence comprising at least 8 contiguous nucleobases of any of the nucleobase sequences of SEQ ID NOs: 37-1356. In certain embodiments, a compound comprises a modified oligonucleotide 12 to 30 linked nucleosides in length and having a nucleobase sequence comprising the nucleobase sequence of any one of SEQ ID NOs: 37-1356. In certain embodiments, a compound comprises a modified oligonucleotide consisting of the nucleobase sequence of any one of SEQ ID NOs: 37-1356. In certain embodiments, a compound comprises a modified oligonucleotide 16 to 30 linked nucleosides in length having a nucleobase sequence comprising any one of SEQ ID NOs: 228, 168, 717, 1340, 1270, 1272, and 1294. In certain embodiments, a compound comprises a modified oligonucleotide having a nucleobase sequence consisting of any one of SEQ
ID NOs: 228, 168, 717, 1340, 1270, 1272, and 1294. In certain embodiments, the compound is ION 729018, 728958, 785525, 785674, 785675, 786503, 786524, or 786548. In any of the foregoing embodiments, the compound can be single-stranded or double-stranded. In any of the foregoing embodiments, the compound can be an antisense compound or oligomeric compound. In certain embodiments, the compound is administered to the individual parenterally. In certain embodiments, administering the compound improves, preserves, or prevents inflammation, cirrhosis, fibrosis, proteinuria, joint inflammation, autoantibody production, inflammatory cell infiltration, collagen deposits, or inflammatory cytokine production. In certain embodiments, administering the compound improves, preserves, or prevents inflammation in the gastrointestinal tract, diarrhea, pain, fatigue, abdominal cramping, blood in the stool, intestinal inflammation, disruption of the epithelial barrier of the gastrointestinal tract, dysbiosis, increased bowel frequency, tenesmus or painful spasms of the anal sphincter, constipation, or unintended weight loss.
In certain embodiments, a method of inhibiting expression of IRF5 in a cell comprises contacting the cell with a compound comprising a IRF5 specific inhibitor, thereby inhibiting expression of IRF5 in the cell. In certain embodiments, the cell is a gastrointestinal tract cell. In certain embodiments, the cell is a liver cell. In certain embodiments, the cell is a kidney cell. In certain embodiments, the cell is a lung cell. In certain embodiments, the cell is in the gastrointestinal tract, the lungs, the liver, the kidney, or any other organ. In certain embodiments, the cell is in the gastrointestinal tract of an individual who has, or is at risk of having, inflammation in the gastrointestinal tract, diarrhea, pain, fatigue, abdominal cramping, blood in the stool, intestinal inflammation, disruption of the epithelial barrier of the gastrointestinal tract, dysbiosis, increased bowel frequency, tenesmus or painful spasms of the anal sphincter, constipation, or unintended weight loss. In certain embodiments, the compound comprises an antisense compound targeted to IRF5. In certain embodiments, the compound comprises an oligonucleotide targeted to IRF5. In certain embodiments, a compound comprises a modified oligonucleotide 12 to 30 linked nucleosides in length and having a nucleobase sequence comprising at least 8 contiguous nucleobases of any of the nucleobase sequences of SEQ ID NOs: 37-1356. In certain embodiments, a compound comprises a modified oligonucleotide 12 to 30 linked nucleosides in length and having a nucleobase sequence comprising the nucleobase sequence of any one of SEQ ID NOs: 37-1356. In certain embodiments, a compound comprises a modified oligonucleotide consisting of the nucleobase sequence of any one of SEQ ID NOs: 37-1356. In certain embodiments, a compound comprises a modified oligonucleotide 16 to 30 linked nucleosides in length having a nucleobase sequence comprising any one of SEQ ID NOs: 228, 168, 717, 1340, 1270, 1272, and 1294. In certain embodiments, a compound comprises a modified oligonucleotide having a nucleobase sequence consisting of any one of SEQ ID NOs: 228, 168, 717, 1340, 1270, 1272, and 1294. In certain embodiments, the compound is ION 729018, 728958, 785525, 785674, 785675, 786503, 786524, or 786548. In any of the foregoing embodiments, the compound can be single-stranded or double-stranded. In any of the foregoing embodiments, the compound can be an antisense compound or oligomeric compound.
In certain embodiments, a method of reducing or inhibiting inflammation, cirrhosis, fibrosis, proteinuria, joint inflammation, autoantibody production, inflammatory cell infiltration, collagen deposits, or inflammatory cytokine production in an individual having, or at risk of having, a disease associated with IRF5 comprises administering to the individual a compound comprising a IRF5 specific inhibitor, thereby reducing or inhibiting inflammation, cirrhosis, fibrosis, proteinuria, joint inflammation, autoantibody production, inflammatory cell infiltration, collagen deposits, or inflammatory cytokine production in the individual. In certain embodiments, a method of reducing or inhibiting inflammation in the gastrointestinal tract, diarrhea, pain, fatigue, abdominal cramping, blood in the stool, intestinal inflammation, disruption of the epithelial barrier of the gastrointestinal tract, dysbiosis, increased bowel frequency, tenesmus or painful spasms of the anal sphincter, constipation, or unintended weight loss in an individual having, or at risk of having, a disease associated with IRF5 comprises administering to the individual a compound comprising a IRF5 specific inhibitor, thereby reducing or inhibiting inflammation in the gastrointestinal tract, diarrhea, pain, fatigue, abdominal cramping, blood in the stool, intestinal inflammation, disruption of the epithelial barrier of the gastrointestinal tract, dysbiosis, increased bowel frequency, tenesmus or painful spasms of the anal sphincter, constipation, or unintended weight loss in the individual. In certain embodiments, the individual has, or is at risk of having, inflammatory bowel disease (IBD), systemic lupus erythematosus (SLE), rheumatoid arthritis, primary biliary cirrhosis, systemic sclerosis, Sjogren’s syndrome, multiple sclerosis, scleroderma, interstitial lung disease (SSc-ILD), polycystic kidney disease (PKD), chronic kidney disease (CKD), NASH, liver fibrosis, asthma, or severe asthma. In certain embodiments, the compound comprises an antisense compound targeted to IRF5. In certain embodiments, the compound comprises an oligonucleotide targeted to IRF5. In certain embodiments, a compound comprises a modified oligonucleotide 12 to 30 linked nucleosides in length and having a nucleobase sequence comprising at least 8 contiguous nucleobases of any of the nucleobase sequences of SEQ ID NOs: 37-1356. In certain embodiments, a compound comprises a modified oligonucleotide 12 to 30 linked nucleosides in length and having a nucleobase sequence comprising the nucleobase sequence of any one of SEQ ID NOs: 37-1356. In certain embodiments, a compound comprises a modified oligonucleotide consisting of the nucleobase sequence of any one of SEQ ID NOs: 37-1356. In certain embodiments, a compound comprises a modified oligonucleotide 16 to 30 linked nucleosides in length having a nucleobase sequence comprising any one of SEQ ID NOs: 228, 168, 717, 1340, 1270, 1272, and 1294. In certain embodiments, a compound comprises a modified oligonucleotide having a nucleobase sequence consisting of any one of SEQ ID NOs: 228, 168, 717, 1340, 1270, 1272, and 1294. In certain embodiments, the compound is ION 729018, 728958, 785525, 785674, 785675, 786503, 786524, or 786548. In any of the foregoing embodiments, the compound can be single-stranded or double-stranded. In any of the foregoing embodiments, the compound can be an antisense compound or oligomeric compound. In certain embodiments, the compound is administered to the individual parenterally. In certain embodiments, the individual is identified as having, or at risk of having, a disease associated with IRF5.
Certain embodiments are drawn to a compound comprising a IRF5 specific inhibitor for use in treating a disease associated with IRF5. In certain embodiments, the disease is inflammatory bowel disease (IBD), systemic lupus erythematosus (SLE), rheumatoid arthritis, primary biliary cirrhosis, systemic sclerosis, Sjogren’s syndrome, multiple sclerosis, scleroderma, interstitial lung disease (SSc-ILD), polycystic kidney disease (PKD), chronic kidney disease (CKD), NASH, liver fibrosis, asthma, or severe asthma. In certain embodiments, the compound comprises an antisense compound targeted to IRF5. In certain embodiments, the compound comprises an oligonucleotide targeted to IRF5. In certain embodiments, a compound comprises a modified oligonucleotide 12 to 30 linked nucleosides in length and having a nucleobase sequence comprising at least 8 contiguous nucleobases of any of the nucleobase sequences of SEQ ID NOs: 37-1356. In certain embodiments, a compound comprises a modified oligonucleotide 12 to 30 linked nucleosides in length and having a nucleobase sequence comprising the nucleobase sequence of any one of SEQ ID NOs: 37-1356. In certain embodiments, a compound comprises a modified oligonucleotide consisting of the nucleobase sequence of any one of SEQ ID NOs: 37-1356. In certain embodiments, a compound comprises a modified oligonucleotide 16 to 30 linked nucleosides in length having a nucleobase sequence comprising any one of SEQ ID NOs: 228, 168, 717, 1340, 1270, 1272, and 1294. In certain embodiments, a compound comprises a modified oligonucleotide having a nucleobase sequence consisting of any one of SEQ ID NOs: 228, 168, 717, 1340, 1270, 1272, and 1294. In certain embodiments, the compound is ION 729018, 728958, 785525, 785674, 785675, 786503, 786524, or 786548. In any of the foregoing embodiments, the compound can be singlestranded or double-stranded. In any of the foregoing embodiments, the compound can be an antisense compound or oligomeric compound. In certain embodiments, the compound is administered to the individual parenterally.
Certain embodiments are drawn to a compound comprising an IRF5 specific inhibitor for use in reducing or inhibiting inflammation, cirrhosis, fibrosis, proteinuria, joint inflammation, autoantibody production, inflammatory cell infiltration, collagen deposits, or inflammatory cytokine production in an individual having, or at risk of having, inflammatory bowel disease (IBD), systemic lupus erythematosus (SLE), rheumatoid arthritis, primary biliary cirrhosis, systemic sclerosis, Sjogren’s syndrome, multiple sclerosis, scleroderma, interstitial lung disease (SSc-ILD), polycystic kidney disease (PKD), chronic kidney disease (CKD), NASH, liver fibrosis, asthma, or severe asthma. In certain embodiments, the IRF5 specific inhibitor for use reduces or inhibits inflammation in the gastrointestinal tract, diarrhea, pain, fatigue, abdominal cramping, blood in the stool, intestinal inflammation, disruption of the epithelial barrier of the gastrointestinal tract, dysbiosis, increased bowel frequency, tenesmus or painful spasms of the anal sphincter, constipation, or unintended weight loss in an individual. In certain embodiments, the compound comprises an antisense compound targeted to IRF5. In certain embodiments, the compound comprises an oligonucleotide targeted to IRF5. In certain embodiments, a compound comprises a modified oligonucleotide 12 to 30 linked nucleosides in length and having a nucleobase sequence comprising at least 8 contiguous nucleobases of any of the nucleobase sequences of SEQ ID NOs: 37-1356. In certain embodiments, a compound comprises a modified oligonucleotide 12 to 30 linked nucleosides in length and having a nucleobase sequence comprising the nucleobase sequence of any one of SEQ ID NOs: 37-1356. In certain embodiments, a compound comprises a modified oligonucleotide consisting ofthe nucleobase sequence of any one of SEQ ID NOs: 37-1356. In certain embodiments, a compound comprises a modified oligonucleotide 16 to 30 linked nucleosides in length having a nucleobase sequence comprising any one of SEQ ID NOs: 228, 168, 717, 1340, 1270, 1272, and 1294. In certain embodiments, a compound comprises a modified oligonucleotide having a nucleobase sequence consisting of any one of SEQ ID NOs: 228, 168, 717, 1340, 1270, 1272, and 1294. In certain embodiments, the compound is ION 729018, 728958, 785525, 785674, 785675, 786503, 786524, or 786548. In any ofthe foregoing embodiments, the compound can be single-stranded or double-stranded. In any of the foregoing embodiments, the compound can be an antisense compound or oligomeric compound.
Certain embodiments are drawn to the use of a compound comprising a IRF5 specific inhibitor for the manufacture or preparation of a medicament for treating a disease associated with IRF5. Certain embodiments are drawn to the use of a compound comprising a IRF5 specific inhibitor for the preparation of a medicament for treating a disease associated with IRF5. In certain embodiments, the disease is an inflammatory disease. In certain embodiments, the disease is a gastrointestinal disease. In certain embodiments, the gastrointestinal disease is ulcerative colitis or Crohn’s disease. In certain embodiments, the disease is inflammatory bowel disease (IBD), systemic lupus erythematosus (SLE), rheumatoid arthritis, primary biliary cirrhosis, systemic sclerosis, Sjogren’s syndrome, multiple sclerosis, scleroderma, interstitial lung disease (SSc-ILD), polycystic kidney disease (PKD), chronic kidney disease (CKD), NASH, liver fibrosis, asthma, or severe asthma. In certain embodiments, the compound comprises an antisense compound targeted to IRF5. In certain embodiments, the compound comprises an oligonucleotide targeted to IRF5. In certain embodiments, a compound comprises a modified oligonucleotide 12 to 30 linked nucleosides in length and having a nucleobase sequence comprising at least 8 contiguous nucleobases of any of the nucleobase sequences of SEQ ID NOs: 37-1356. In certain embodiments, a compound comprises a modified oligonucleotide 12 to 30 linked nucleosides in length and having a nucleobase sequence comprising the nucleobase sequence of any one of SEQ ID NOs: 37-1356. In certain embodiments, a compound comprises a modified oligonucleotide consisting of the nucleobase sequence of any one of SEQ ID NOs: 37-1356. In certain embodiments, a compound comprises a modified oligonucleotide 16 to 30 linked nucleosides in length having a nucleobase sequence comprising any one of SEQ ID NOs: 228, 168, 717, 1340, 1270, 1272, and 1294. In certain embodiments, a compound comprises a modified oligonucleotide having a nucleobase sequence consisting of any one of SEQ ID NOs: 228, 168, 717, 1340, 1270, 1272, and 1294. In certain embodiments, the compound is ION 729018, 728958, 785525, 785674, 785675, 786503, 786524, or 786548. In any of the foregoing embodiments, the compound can be single-stranded or double-stranded. In any ofthe foregoing embodiments, the compound can be an antisense compound or oligomeric compound.
Certain embodiments are drawn to the use of a compound comprising a IRF5 specific inhibitor for the manufacture or preparation of a medicament for reducing or inhibiting inflammation, cirrhosis, fibrosis, proteinuria, joint inflammation, autoantibody production, inflammatory cell infiltration, collagen deposits, or inflammatory cytokine production in an individual having, or at risk of having, a disease associated with IRF5. In certain embodiments, the IRF5 specific inhibitor for the manufacture or preparation of the medicament reduces or inhibits inflammation in the gastrointestinal tract, diarrhea, pain, fatigue, abdominal cramping, blood in the stool, intestinal inflammation, disruption of the epithelial barrier of the gastrointestinal tract, dysbiosis, increased bowel frequency, tenesmus or painful spasms of the anal sphincter, constipation, or unintended weight loss in an individual. In certain embodiments, the disease is inflammatory bowel disease (IBD), systemic lupus erythematosus (SLE), rheumatoid arthritis, primary biliary cirrhosis, systemic sclerosis, Sjogren’s syndrome, multiple sclerosis, scleroderma, interstitial lung disease (SSc-ILD), polycystic kidney disease (PKD), chronic kidney disease (CKD), NASH, liver fibrosis, asthma, or severe asthma. Certain embodiments are drawn to use of a compound comprising a IRF5 specific inhibitor for the preparation of a medicament for treating a disease associated with IRF5. In certain embodiments, the disease is inflammatory bowel disease (IBD), systemic lupus erythematosus (SLE), rheumatoid arthritis, primary biliary cirrhosis, systemic sclerosis, Sjogren’s syndrome, multiple sclerosis, scleroderma, interstitial lung disease (SSc-ILD), polycystic kidney disease (PKD), chronic kidney disease (CKD), NASH, liver fibrosis, asthma, or severe asthma. In certain embodiments, the compound comprises an antisense compound targeted to IRF5. In certain embodiments, the compound comprises an oligonucleotide targeted to IRF5. In certain embodiments, a compound comprises a modified oligonucleotide 12 to 30 linked nucleosides in length and having anucleobase sequence comprising at least 8 contiguous nucleobases of any of the nucleobase sequences of SEQ ID NOs: 37-1356. In certain embodiments, a compound comprises a modified oligonucleotide 12 to 30 linked nucleosides in length and having a nucleobase sequence comprising the nucleobase sequence of any one of SEQ ID NOs: 37-1356. In certain embodiments, a compound comprises a modified oligonucleotide consisting of the nucleobase sequence of any one of SEQ ID NOs: 37-1356. In certain embodiments, a compound comprises a modified oligonucleotide 16 to 30 linked nucleosides in length having a nucleobase sequence comprising any one of SEQ ID NOs: 228, 168, 717, 1340, 1270, 1272, and 1294. In certain embodiments, a compound comprises a modified oligonucleotide having a nucleobase sequence consisting of any one of SEQ ID NOs: 228, 168, 717, 1340, 1270, 1272, and 1294. In certain embodiments, the compound is ION 729018, 728958, 785525, 785674, 785675, 786503, 786524, or 786548. In any of the foregoing embodiments, the compound can be singlestranded or double-stranded. In any of the foregoing embodiments, the compound can be an antisense compound or oligomeric compound.
In any of the foregoing methods or uses, the compound can be targeted to IRF5. In certain embodiments, the compound comprises or consists of a modified oligonucleotide, for example, a modified oligonucleotide 8 to 80 linked nucleosides in length, 10 to 30 linked nucleosides in length, 12 to 30 linked nucleosides in length, or 20 linked nucleosides in length. In certain embodiments, the modified oligonucleotide is at least 80%, at least 85%, at least 90%, at least 95% or 100% complementary to any of the nucleobase sequences recited in SEQ ID NOs: 37-1356. In certain embodiments, the modified oligonucleotide comprises at least one modified intemucleoside linkage, at least one modified sugar and/or at least one modified nucleobase. In certain embodiments, the modified intemucleoside linkage is a phosphorothioate intemucleoside linkage, the modified sugar is a bicyclic sugar or a 2’-O-methoxyethyl modified sugar, and the modified nucleobase is a 5-methylcytosine. In certain embodiments, the modified oligonucleotide comprises a gap segment consisting of linked deoxynucleosides; a 5’ wing segment consisting of linked nucleosides; and a 3’ wing segment consisting of linked nucleosides, wherein the gap segment is positioned immediately adjacent to and between the 5 ’ wing segment and the 3 ’ wing segment and wherein each nucleoside of each wing segment comprises a modified sugar.
In any of the foregoing embodiments, the modified oligonucleotide is 12 to 30, 15 to 30, 15 to 25, 15 to 24, 16 to 24, 17 to 24, 18 to 24, 19 to 24, 20 to 24, 19 to 22, 20 to 22, 16 to 20, or 16 or 20 linked nucleosides in length. In certain embodiments, the modified oligonucleotide is at least 80%, at least 85%, at least 90%, at least 95% or 100% complementary to any of the nucleobase sequences recited in SEQ ID NOs: 37-1356.
In certain embodiments, a compound comprises or consists of a modified oligonucleotide 12-30 linked nucleobases in length having a nucleobase sequence comprising the sequence recited in any one of SEQ ID NOs: 228, 168, 1270, 1272, and 1294, wherein the modified oligonucleotide comprises a gap segment consisting of ten linked deoxynucleosides;
a 5’ wing segment consisting of three linked nucleosides; and a 3’ wing segment consisting of three linked nucleosides;
wherein the gap segment is positioned between the 5 ’ wing segment and the 3 ’ wing segment, wherein each nucleoside of each wing segment comprises a cEt sugar; wherein each intemucleoside linkage is a phosphorothioate linkage and wherein each cytosine is a 5-methylcytosine. In certain embodiments, the modified oligonucleotide consists of 16-30 linked nucleosides. In certain embodiments, the modified oligonucleotide consists of 16 linked nucleosides.
In certain embodiments, a compound consists of a modified oligonucleotide 16 linked nucleobases in length having a nucleobase sequence consists of the sequence recited in SEQ ID NO: 228, wherein the modified oligonucleotide comprises a gap segment consisting of ten linked deoxynucleosides;
a 5’ wing segment consisting of three linked nucleosides; and a 3’ wing segment consisting of three linked nucleosides;
wherein the gap segment is positioned between the 5 ’ wing segment and the 3 ’ wing segment, wherein each nucleoside of each wing segment comprises a cEt sugar; wherein each intemucleoside linkage is a phosphorothioate linkage and wherein each cytosine is a 5-methylcytosine.
In certain embodiments, a compound comprises or consists of a modified oligonucleotide 12-30 linked nucleobases in length having a nucleobase sequence comprising the sequence recited in any one of SEQ ID NOs: 717, wherein the modified oligonucleotide comprises a gap segment consisting of ten linked deoxynucleosides;
a 5’ wing segment consisting of two linked nucleosides; and a 3’ wing segment consisting of four linked nucleosides;
wherein the gap segment is positioned between the 5’ wing segment and the 3’ wing segment, wherein each of the nucleosides in the 5’ wing segment comprises a cEt sugar (kk); wherein the nucleosides of the 3’ wing segment comprise from 5’ to 3’ direction of a cEt sugar, a 2’-MOE sugar, a cEt sugar, and a 2’-MOE sugar (keke); wherein each intemucleoside linkage is a phosphorothioate linkage and wherein each cytosine is a 5methylcytosine. In certain embodiments, the modified oligonucleotide consists of 16-30 linked nucleosides. In certain embodiments, the modified oligonucleotide consists of 16 linked nucleosides.
In certain embodiments, a compound comprises or consists of a modified oligonucleotide 12-30 linked nucleobases in length having a nucleobase sequence comprising the sequence recited in any one of SEQ ID NOs: 717 and 1340, wherein the modified oligonucleotide comprises a gap segment consisting of nine linked deoxynucleosides;
a 5’ wing segment consisting of two linked nucleosides; and a 3’ wing segment consisting of five linked nucleosides;
wherein the gap segment is positioned between the 5’ wing segment and the 3’ wing segment, wherein each of the nucleosides in the 5’ wing segment comprises a cEt sugar (kk); wherein the nucleosides of the 3’ wing segment from 5’ to 3’ direction comprise a 2’-MOE sugar, a 2’-MOE sugar, a 2’-MOE sugar, a cEt sugar and a cEt sugar (eeekk); wherein each intemucleoside linkage is a phosphorothioate linkage and wherein each cytosine is a 5-methylcytosine. In certain embodiments, the modified oligonucleotide consists of 16-30 linked nucleosides. In certain embodiments, the modified oligonucleotide consists of 16 linked nucleosides.
In certain embodiments, a compound comprises or consists of ION 729018 or salt thereof, having the following chemical structure:
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In certain embodiments, a compound comprises or consists of the sodium salt of ION 729018, having the following chemical structure:
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In any of the foregoing methods or uses, the compound can be administered parenterally. For 5 example, in certain embodiments the compound can be administered through injection or infusion. Parenteral administration includes subcutaneous administration, intravenous administration, intramuscular administration, intraarterial administration, intraperitoneal administration, or intracranial administration, e.g. intrathecal or intracerebroventricular administration.
Certain Compounds
In certain embodiments, compounds described herein can be antisense compounds. In certain embodiments, the antisense compound comprises or consists of an oligomeric compound. In certain embodiments, the oligomeric compound comprises a modified oligonucleotide. In certain embodiments, the modified oligonucleotide has a nucleobase sequence complementary to that of a target nucleic acid.
In certain embodiments, a compound described herein comprises or consists of a modified oligonucleotide. In certain embodiments, the modified oligonucleotide has a nucleobase sequence complementary to that of a target nucleic acid.
In certain embodiments, a compound or antisense compound is single-stranded. Such a singlestranded compound or antisense compound comprises or consists of an oligomeric compound. In certain embodiments, such an oligomeric compound comprises or consists of an oligonucleotide and optionally a conjugate group. In certain embodiments, the oligonucleotide is an antisense oligonucleotide. In certain embodiments, the oligonucleotide is modified. In certain embodiments, the oligonucleotide of a single-stranded antisense compound or oligomeric compound comprises a self-complementary nucleobase sequence.
In certain embodiments, compounds are double-stranded. Such double-stranded compounds comprise a first modified oligonucleotide having a region complementary to a target nucleic acid and a second modified oligonucleotide having a region complementary to the first modified oligonucleotide. In certain embodiments, the modified oligonucleotide is an RNA oligonucleotide. In such embodiments, the thymine nucleobase in the modified oligonucleotide is replaced by a uracil nucleobase. In certain embodiments, compound comprises a conjugate group. In certain embodiments, one of the modified oligonucleotides is conjugated. In certain embodiments, both the modified oligonucleotides are conjugated. In certain embodiments, the first modified oligonucleotide is conjugated. In certain embodiments, the second modified oligonucleotide is conjugated. In certain embodiments, the first modified oligonucleotide is 16-30 linked nucleosides in length and the second modified oligonucleotide is 16 -30 linked nucleosides in length. In certain embodiments, one of the modified oligonucleotides has a nucleobase sequence comprising at least 8 contiguous nucleobases of any of SEQ ID NOs: 37-1356.
In certain embodiments, antisense compounds are double-stranded. Such double-stranded antisense compounds comprise a first oligomeric compound having a region complementary to a target nucleic acid and a second oligomeric compound having a region complementary to the first oligomeric compound. Hie first oligomeric compound of such double stranded antisense compounds typically comprises or consists of a modified oligonucleotide and optionally a conjugate group. Hie oligonucleotide of the second oligomeric compound of such a double-stranded antisense compound may be modified or unmodified. Either or both oligomeric compounds of a double-stranded antisense compound may comprise a conjugate group. Hie oligomeric compounds of double-stranded antisense compounds may include non-complementary overhanging nucleosides.
Examples of single-stranded and double-stranded compounds include, but are not limited to, oligonucleotides, siRNAs, microRNA targeting oligonucleotides, and single-stranded RNAi compounds, such as small hairpin RNAs (shRNAs), single-stranded siRNAs (ssRNAs), and microRNA mimics.
In certain embodiments, a compound described herein has a nucleobase sequence that, when written in the 5’ to 3’ direction, comprises the reverse complement of the target segment of a target nucleic acid to which it is targeted.
In certain embodiments, a compound described herein comprises an oligonucleotide 12 to 30 linked subunits in length. In certain embodiments, a compound described herein comprises an oligonucleotide 12 to 22 linked subunits in length. In certain embodiments, compound described herein comprises an oligonucleotide 14 to 30 linked subunits in length. In certain embodiments, compound described herein comprises an oligonucleotide 14 to 20 linked subunits in length. In certain embodiments, a compound described herein comprises an oligonucleotide 15 to 30 linked subunits in length. In certain embodiments, a compound described herein comprises an oligonucleotide 15 to 20 linked subunits in length. In certain embodiments, a compound described herein comprises an oligonucleotide 16 to 30 linked subunits in length. In certain embodiments, a compound described herein comprises an oligonucleotide 16 to 20 linked subunits in length. In certain embodiments, a compound described herein comprises an oligonucleotide 17 to 30 linked subunits in length. In certain embodiments, a compound described herein comprises an oligonucleotide 17 to 20 linked subunits in length. In certain embodiments, a compound described herein comprises an oligonucleotide 18 to 30 linked subunits in length. In certain embodiments, a compound described herein comprises an oligonucleotide 18 to 20 linked subunits in length. In certain embodiments, a compound described herein comprises an oligonucleotide 20 to 30 linked subunits in length. In other words, such oligonucleotides are 12 to 30 linked subunits, 14 to 30 linked subunits, 14 to 20 subunits, 15 to 30 subunits, 15 to 20 subunits, 16 to 30 subunits, 16 to 20 subunits, 17 to 30 subunits, 17 to 20 subunits, 18 to 30 subunits, 18 to 20 subunits, or 20 to 30 subunits in length, respectively. In certain embodiments, a compound described herein comprises an oligonucleotide 14 linked subunits in length. In certain embodiments, a compound described herein comprises an oligonucleotide 16 linked subunits in length. In certain embodiments, a compound described herein comprises an oligonucleotide 17 linked subunits in length. In certain embodiments, compound described herein comprises an oligonucleotide 18 linked subunits in length. In certain embodiments, a compound described herein comprises an oligonucleotide 19 linked subunits in length. In certain embodiments, a compound described herein comprises an oligonucleotide 20 linked subunits in length. In other embodiments, a compound described herein comprises an oligonucleotide 8 to 80, 12 to 50, 13 to 30, 13 to 50, 14 to 30, 14 to 50, 15 to 30, 15 to 50, 16 to 30, 16 to 50, 17 to 30, 17 to 50, 18 to 22, 18 to 24, 18 to 30, 18 to 50, 19 to 22, 19 to 30, 19 to 50, or 20 to 30 linked subunits. In certain such embodiments, the compound described herein comprises an oligonucleotide 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, or 30 linked subunits in length, or a range defined by any two of the above values. In some embodiments the linked subunits are nucleotides, nucleosides, or nucleobases.
In certain embodiments, the compound may further comprise additional features or elements, such as a conjugate group, that are attached to the oligonucleotide. In certain embodiments, such compounds are antisense compounds. In certain embodiments, such compounds are oligomeric compounds. In embodiments where a conjugate group comprises a nucleoside (i.e. a nucleoside that links the conjugate group to the oligonucleotide), the nucleoside of the conjugate group is not counted in the length of the oligonucleotide.
In certain embodiments, compounds may be shortened or truncated. For example, a single subunit may be deleted from the 5’ end (5’ truncation), or alternatively from the 3’ end (3’ truncation). A shortened or truncated compound targeted to a IRF5 nucleic acid may have two subunits deleted from the 5’ end, or alternatively, may have two subunits deleted from the 3’ end of the compound. Alternatively, the deleted nucleosides may be dispersed throughout the compound.
When a single additional subunit is present in a lengthened compound, the additional subunit may be located at the 5’ or 3’ end of the compound. When two or more additional subunits are present, the added subunits may be adjacent to each other, for example, in a compound having two subunits added to the 5’ end (5’ addition), or alternatively, to the 3’ end (3’ addition) of the compound. Alternatively, the added subunits may be dispersed throughout the compound.
It is possible to increase or decrease the length of a compound, such as an oligonucleotide, and/or introduce mismatch bases without eliminating activity (Woolf et al. Proc. Natl. Acad. Sci. USA 1992, 89:73057309; Gautschi etal.J. Natl. Cancer Inst. March 2001, 93:463-471; Maher and Dolnick Nuc. Acid. Res. 1998, 16:3341-3358). However, seemingly small changes in oligonucleotide sequence, chemistry and motif can make large differences in one or more of the many properties required for clinical development (Seth et al. J. Med. Chem. 2009, 52, 10; Egli et al. J. Am. Chem. Soc. 2011, 133, 16642).
In certain embodiments, compounds described herein are interfering RNA compounds (RNAi), which include double-stranded RNA compounds (also referred to as short-interfering RNA or siRNA) and singlestranded RNAi compounds (or ssRNA). Such compounds work at least in part through the RISC pathway to degrade and/or sequester a target nucleic acid (thus, include microRNA/microRNA-mimic compounds). As used herein, the term siRNA is meant to be equivalent to other terms used to describe nucleic acid molecules that are capable of mediating sequence-specific RNAi, for example, short interfering RNA (siRNA), doublestranded RNA (dsRNA), micro-RNA (miRNA), short hairpin RNA (shRNA), short interfering oligonucleotide, short interfering nucleic acid, short interfering modified oligonucleotide, chemically modified siRNA, posttranscriptional gene silencing RNA (ptgsRNA), and others. In addition, as used herein, the term “RNAi” is meant to be equivalent to other terms used to describe sequence-specific RNA interference, such as post transcriptional gene silencing, translational inhibition, or epigenetics.
In certain embodiments, a compound described herein can comprise any of the oligonucleotide sequences targeted to IRF5 described herein. In certain embodiments, the compound can be double-stranded. In certain embodiments, the compound comprises a first strand comprising at least an 8, 9, 10, 11, 12, 13, 14, 15, or 16 contiguous nucleobase portion of any one of SEQ ID NOs: 37-1356 and a second strand. In certain embodiments, the compound comprises a first strand comprising the nucleobase sequence of any one of SEQ
ID NOs: 37-1356 and a second strand. In certain embodiments, the compound comprises ribonucleotides in which the first strand has uracil (U) in place of thymine (T) in any one of SEQ ID NOs: 37-1356. In certain embodiments, the compound comprises (i) a first strand comprising a nucleobase sequence complementary to the site on IRF5 to which any of SEQ ID NOs: 37-1356 is targeted, and (ii) a second strand. In certain embodiments, the compound comprises one or more modified nucleotides in which the 2' position of the sugar contains a halogen (such as fluorine group; 2’-F) or contains an alkoxy group (such as a methoxy group; 2’OMe). In certain embodiments, the compound comprises at least one 2’-F sugar modification and at least one 2’-OMe sugar modification. In certain embodiments, the at least one 2’-F sugar modification and at least one 2’-OMe sugar modification are arranged in an alternating pattern for at least 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 contiguous nucleobases along a strand of the dsRNA compound. In certain embodiments, the compound comprises one or more linkages between adjacent nucleotides other than a naturally-occurring phosphodiester linkage. Examples of such linkages include phosphoramide, phosphorothioate, and phosphorodithioate linkages. Hie compounds may also be chemically modified nucleic acid molecules as taught in U.S. Pat. No. 6,673,661. In other embodiments, the compound contains one or two capped strands, as disclosed, for example, by WO 00/63364, filed Apr. 19, 2000.
In certain embodiments, the first strand of the compound is an siRNA guide strand and the second strand of the compound is an siRNA passenger strand. In certain embodiments, the second strand of the compound is complementary to the first strand. In certain embodiments, each strand of the compound is 16, 17, 18, 19, 20, 21, 22, or 23 linked nucleosides in length. In certain embodiments, the first or second strand of the compound can comprise a conjugate group.
In certain embodiments, a compound described herein can comprise any of the oligonucleotide sequences targeted to IRF5 described herein. In certain embodiments, the compound is single stranded. In certain embodiments, such a compound is a single-stranded RNAi (ssRNAi) compound. In certain embodiments, the compound comprises at least an 8, 9, 10, 11, 12, 13, 14, 15, or 16 contiguous nucleobase portion of any one of SEQ ID NOs: 37-1356. In certain embodiments, the compound comprises the nucleobase sequence of any one of SEQ ID NOs: 37-1356. In certain embodiments, the compound comprises ribonucleotides in which uracil (U) is in place of thymine (T) in any one of SEQ ID NOs: 37-1356. In certain embodiments, the compound comprises a nucleobase sequence complementary to the site on IRF5 to which any of SEQ ID NOs: 37-1356 is targeted. In certain embodiments, the compound comprises one or more modified nucleotides in which the 2' position in the sugar contains a halogen (such as fluorine group; 2’-F) or contains an alkoxy group (such as a methoxy group; 2’-OMe). In certain embodiments, the compound comprises at least one 2’-F sugar modification and at least one 2’-OMe sugar modification. In certain embodiments, the at least one 2’-F sugar modification and at least one 2’-OMe sugar modification are arranged in an alternating pattern for at least 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 contiguous nucleobases along a strand of the compound. In certain embodiments, the compound comprises one or more linkages between adjacent nucleotides other than a naturally-occurring phosphodiester linkage. Examples of such linkages include phosphoramide, phosphorothioate, and phosphorodithioate linkages. Hie compounds may also be chemically modified nucleic acid molecules as taught in U.S. Pat. No. 6,673,661. In other embodiments, the compound contains a capped strand, as disclosed, for example, by WO 00/63364, filed Apr. 19,2000. Incertainembodiments, the compound consists of 16, 17, 18, 19,20,21, 22, or 23 linked nucleosides. In certain embodiments, the compound can comprise a conjugate group.
Certain Mechanisms
In certain embodiments, compounds described herein comprise or consist of modified oligonucleotides. In certain embodiments, compounds described herein are antisense compounds. In certain embodiments, compounds comprise oligomeric compounds. In certain embodiments, compounds described herein are capable of hybridizing to a target nucleic acid, resulting in at least one antisense activity. In certain embodiments, compounds described herein selectively affect one or more target nucleic acid. Such compounds comprise a nucleobase sequence that hybridizes to one or more target nucleic acid, resulting in one or more desired antisense activity and does not hybridize to one or more non-target nucleic acid or does not hybridize to one or more non-target nucleic acid in such a way that results in a significant undesired antisense activity.
In certain antisense activities, hybridization of a compound described herein to a target nucleic acid results in recruitment of a protein that cleaves the target nucleic acid. For example, certain compounds described herein result in RNase H mediated cleavage of the target nucleic acid. RNase H is a cellular endonuclease that cleaves the RNA strand of an RNA:DNA duplex. The DNA in such an RNA:DNA duplex need not be unmodified DNA. In certain embodiments, compounds described herein are sufficiently “DNAlike” to elicit RNase H activity. Further, in certain embodiments, one or more non-DNA-like nucleoside in the gap of a gapmer is tolerated.
In certain antisense activities, compounds described herein or a portion of the compound is loaded into an RNA-induced silencing complex (RISC), ultimately resulting in cleavage of the target nucleic acid. For example, certain compounds described herein result in cleavage of the target nucleic acid by Argonaute. Compounds that are loaded into RISC are RNAi compounds. RNAi compounds may be double-stranded (siRNA) or single-stranded (ssRNA).
In certain embodiments, hybridization of compounds described herein to a target nucleic acid does not result in recruitment of a protein that cleaves that target nucleic acid. In certain such embodiments, hybridization of the compound to the target nucleic acid results in alteration of splicing of the target nucleic acid. In certain embodiments, hybridization of the compound to a target nucleic acid results in inhibition of a binding interaction between the target nucleic acid and a protein or other nucleic acid. In certain such embodiments, hybridization of the compound to a target nucleic acid results in alteration of translation of the target nucleic acid.
Antisense activities may be observed directly or indirectly. In certain embodiments, observation or detection of an antisense activity involves observation or detection of a change in an amount of a target nucleic acid or protein encoded by such target nucleic acid, a change in the ratio of splice variants of a nucleic acid or protein, and/or a phenotypic change in a cell or animal.
Target Nucleic Acids, Target Regions and Nucleotide Sequences
In certain embodiments, compounds described herein comprise or consist of an oligonucleotide comprising a region that is complementary to a target nucleic acid. In certain embodiments, the target nucleic acid is an endogenous RNA molecule. In certain embodiments, the target nucleic acid encodes a protein. In certain such embodiments, the target nucleic acid is selected from an mRNA and a pre-mRNA, including intronic, exonic and untranslated regions. In certain embodiments, the target RNA is an mRNA. In certain embodiments, the target nucleic acid is a pre-mRNA. In certain such embodiments, the target region is entirely within an intron. In certain embodiments, the target region spans an intron/exon junction. In certain embodiments, the target region is at least 50% within an intron.
Nucleotide sequences that encode IRF5 include, without limitation, the following: RefSeq or GENBANK Accession No. U51127.1 (incorporated by reference, disclosed herein as SEQ ID NO: 4); GENBANK Accession No. NT_007933.14 truncated from nucleotides 53761170 to 53774065 (incorporated by reference, disclosed herein as SEQ ID NO: 2); GENBANK Accession No. DC427600.1 (incorporated by reference, disclosed herein as SEQ ID NO: 5); GENBANK Accession No. NM_001098627.3 (incorporated by reference, disclosed herein as SEQ ID NO: 1); GENBANK Accession No. NM_001098629.2 (incorporated by reference, disclosed herein as SEQ ID NO: 3); GENBANK Accession No. NM_001098630.2 (incorporated by reference, disclosed herein as SEQ ID NO: 6); GENBANK Accession No. NM_001242452.2 (incorporated by reference, disclosed herein as SEQ ID NO: 7); GENBANK Accession No. NM_032643.4 (incorporated by reference, disclosed herein as SEQ ID NO: 8); and GENBANK Accession No. NC_000007.14 truncated from nucleotides 128935001 to 128953000 (incorporated by reference, disclosed herein as SEQ ID NO: 9).
Hybridization
In some embodiments, hybridization occurs between a compound disclosed herein and a IRF5 nucleic acid. The most common mechanism of hybridization involves hydrogen bonding (e.g., Watson-Crick, Hoogsteen or reversed Hoogsteen hydrogen bonding) between complementary nucleobases of the nucleic acid molecules.
Hybridization can occur under varying conditions. Hybridization conditions are sequence-dependent and are determined by the nature and composition of the nucleic acid molecules to be hybridized.
Methods of determining whether a sequence is specifically hybridizable to a target nucleic acid are well known in the art. In certain embodiments, the compounds provided herein are specifically hybridizable with a IRF5 nucleic acid.
Complementarity
An oligonucleotide is said to be complementary to another nucleic acid when the nucleobase sequence of such oligonucleotide or one or more regions thereof matches the nucleobase sequence of another oligonucleotide or nucleic acid or one or more regions thereof when the two nucleobase sequences are aligned in opposing directions. Nucleobase matches or complementary nucleobases, as described herein, are limited to the following pairs: adenine (A) and thymine (T), adenine (A) and uracil (U), cytosine (C) and guanine (G), and 5-methyl cytosine (mC) and guanine (G), unless otherwise specified. Complementary oligonucleotides and/or nucleic acids need not have nucleobase complementarity at each nucleoside and may include one or more nucleobase mismatches. An oligonucleotide is fully complementary or 100% complementary when such oligonucleotides have nucleobase matches at each nucleoside without any nucleobase mismatches.
In certain embodiments, compounds described herein comprise or consist of modified oligonucleotides. In certain embodiments, compounds described herein are antisense compounds. In certain embodiments, compounds comprise oligomeric compounds. Non-complementary nucleobases between a compound and a IRF5 nucleic acid may be tolerated provided that the compound remains able to specifically hybridize to a target nucleic acid. Moreover, a compound may hybridize over one or more segments of a IRF5 nucleic acid such that intervening or adjacent segments are not involved in the hybridization event (e.g., a loop structure, mismatch or hairpin structure).
In certain embodiments, the compounds provided herein, or a specified portion thereof are at least, or are up to 70%, 80%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% complementary to a IRF5 nucleic acid, a target region, target segment, or specified portion thereof. In certain embodiments, the compounds provided herein, or a specified portion thereof, are 70% to 75%, 75% to 80%, 80% to 85%, 85% to 90%, 90% to 95%, 95% to 100%, or any number in between these ranges, complementary to a IRF5 nucleic acid, a target region, target segment, or specified portion thereof. Percent complementarity of a compound with a target nucleic acid can be determined using routine methods.
For example, a compound in which 18 of 20 nucleobases of the compound are complementary to a target region, and would therefore specifically hybridize, would represent 90 percent complementarity. In this example, the remaining non-complementary nucleobases may be clustered or interspersed with complementary nucleobases and need not be contiguous to each other or to complementary nucleobases. As such, a compound which is 18 nucleobases in length having four non-complementary nucleobases which are flanked by two regions of complete complementarity with the target nucleic acid would have 77.8% overall complementarity with the target nucleic acid. Percent complementarity of a compound with a region of a target nucleic acid can be determined routinely using BLAST programs (basic local alignment search tools) and PowerBLAST programs known in the art (Altschul et al., J. Mol. Biol., 1990, 215, 403 410; Zhang and Madden, Genome Res., 1997, 7, 649 656). Percent homology, sequence identity or complementarity, can be determined by, for example, the Gap program (Wisconsin Sequence Analysis Package, Version 8 for Unix, Genetics Computer
Group, University Research Park, Madison Wis.), using default settings, which uses the algorithm of Smith and Waterman (Adv. Appl. Math., 1981,2,482 489).
In certain embodiments, compounds described herein, or specified portions thereof, are fully complementary (i.e. 100% complementary) to a target nucleic acid, or specified portion thereof. For example, a compound may be fully complementary to a IRF5 nucleic acid, or a target region, or a target segment or target sequence thereof. As used herein, “fully complementary” means each nucleobase of a compound is complementary to the corresponding nucleobase of a target nucleic acid. For example, a 20 nucleobase compound is fully complementary to a target sequence that is 400 nucleobases long, so long as there is a corresponding 20 nucleobase portion of the target nucleic acid that is fully complementary to the compound. “Fully complementary” can also be used in reference to a specified portion of the first and /or the second nucleic acid. For example, a 20 nucleobase portion of a 30 nucleobase compound can be “fully complementary” to a target sequence that is 400 nucleobases long. The 20 nucleobase portion of the 30 nucleobase compound is fully complementary to the target sequence if the target sequence has a corresponding 20 nucleobase portion wherein each nucleobase is complementary to the 20 nucleobase portion of the compound. At the same time, the entire 30 nucleobase compound may or may not be fully complementary to the target sequence, depending on whether the remaining 10 nucleobases of the compound are also complementary to the target sequence.
In certain embodiments, compounds described herein comprise one or more mismatched nucleobases relative to the target nucleic acid. In certain such embodiments, antisense activity against the target is reduced by such mismatch, but activity against a non-target is reduced by a greater amount. Thus, in certain such embodiments, selectivity of the compound is improved. In certain embodiments, the mismatch is specifically positioned within an oligonucleotide having a gapmer motif. In certain such embodiments, the mismatch is at position 1, 2, 3, 4, 5, 6, 7, or 8 from the 5’-end of the gap region. In certain such embodiments, the mismatch is at position 9, 8, 7, 6, 5, 4, 3, 2, 1 from the 3’-endofthe gap region. In certain such embodiments, the mismatch is at position 1, 2, 3, or 4 from the 5’-end of the wing region. In certain such embodiments, the mismatch is at position 4, 3, 2, or 1 from the 3’-end of the wing region. In certain embodiments, the mismatch is specifically positioned within an oligonucleotide not having a gapmer motif. In certain such embodiments, the mismatch is at position 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, or 12 from the 5’-end of the oligonucleotide. In certain such embodiments, the mismatch is at position , 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, or 12 from the 3’-end of the oligonucleotide.
The location of a non-complementary nucleobase may be at the 5 ’ end or 3 ’ end of the compound. Alternatively, the non-complementary nucleobase or nucleobases may be at an internal position of the compound. When two or more non-complementary nucleobases are present, they may be contiguous (i.e. linked) or non-contiguous. In one embodiment, a non-complementary nucleobase is located in the wing segment of a gapmer oligonucleotide.
In certain embodiments, compounds described herein that are, or are up to 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 nucleobases in length comprise no more than 4, no more than 3, no more than 2, or no more than 1 non-complementary nucleobase(s) relative to a target nucleic acid, such as a IRF5 nucleic acid, or specified portion thereof.
In certain embodiments, compounds described herein that are, or are up to 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, or 30 nucleobases in length comprise no more than 6, no more than 5, no more than 4, no more than 3, no more than 2, or no more than 1 non-complementary nucleobase(s) relative to a target nucleic acid, such as a IRF5 nucleic acid, or specified portion thereof.
In certain embodiments, compounds described herein also include those which are complementary to a portion of a target nucleic acid. As used herein, “portion” refers to a defined number of contiguous (i.e. linked) nucleobases within a region or segment of a target nucleic acid. A “portion” can also refer to a defined number of contiguous nucleobases of a compound. In certain embodiments, the compounds, are complementary to at least an 8 nucleobase portion of a target segment. In certain embodiments, the compounds are complementary to at least a 9 nucleobase portion of a target segment. In certain embodiments, the compounds are complementary to at least a 10 nucleobase portion of a target segment. In certain embodiments, the compounds are complementary to at least an 11 nucleobase portion of a target segment. In certain embodiments, the compounds are complementary to at least a 12 nucleobase portion of a target segment. In certain embodiments, the compounds are complementary to at least a 13 nucleobase portion of a target segment. In certain embodiments, the compounds are complementary to at least a 14 nucleobase portion of a target segment. In certain embodiments, the compounds are complementary to at least a 15 nucleobase portion of a target segment. In certain embodiments, the compounds are complementary to at least a 16 nucleobase portion of a target segment. Also contemplated are compounds that are complementary to at least a 9, 10, 17, 18, 19, 20, or more nucleobase portion of a target segment, or a range defined by any two of these values.
Identity
Hie compounds provided herein may also have a defined percent identity to a particular nucleotide sequence, SEQ ID NO, or compound represented by a specific ION number, or portion thereof. In certain embodiments, compounds described herein are antisense compounds or oligomeric compounds. In certain embodiments, compounds described herein are modified oligonucleotides. As used herein, a compound is identical to the sequence disclosed herein if it has the same nucleobase pairing ability. For example, a RNA which contains uracil in place of thymidine in a disclosed DNA sequence would be considered identical to the DNA sequence since both uracil and thymidine pair with adenine. Shortened and lengthened versions of the compounds described herein as well as compounds having non-identical bases relative to the compounds provided herein also are contemplated. The non-identical bases may be adjacent to each other or dispersed throughout the compound. Percent identity of an compound is calculated according to the number of bases that have identical base pairing relative to the sequence to which it is being compared.
In certain embodiments, compounds described herein, or portions thereof, are, or are at least, 70%, 75%, 80%, 85%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or 100% identical to one or more of the compounds or SEQ ID NOs, or a portion thereof, disclosed herein. In certain embodiments, compounds described herein are about 70%, 75%, 80%, 85%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, or 99% identical, or any percentage between such values, to a particular nucleotide sequence, SEQ ID NO, or compound represented by a specific ION number, or portion thereof, in which the compounds comprise an oligonucleotide having one or more mismatched nucleobases. In certain such embodiments, the mismatch is at position 1,2, 3, 4, 5, 6, 7, 8, 9, 10, 11, or 12 from the 5’-end of the oligonucleotide. In certain such embodiments, the mismatch is at position , 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, or 12 from the 3’-end of the oligonucleotide.
In certain embodiments, compounds described herein comprise or consist of antisense compounds. In certain embodiments, a portion of the antisense compound is compared to an equal length portion of the target nucleic acid. In certain embodiments, an 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, or 25 nucleobase portion is compared to an equal length portion of the target nucleic acid.
In certain embodiments, compounds described herein comprise or consist of oligonucleotides. In certain embodiments, a portion of the oligonucleotide is compared to an equal length portion of the target nucleic acid. In certain embodiments, an 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, or 25 nucleobase portion is compared to an equal length portion of the target nucleic acid.
Certain Modified Compounds
In certain embodiments, compounds described herein comprise or consist of oligonucleotides consisting of linked nucleosides. Oligonucleotides may be unmodified oligonucleotides (RNA or DNA) or may be modified oligonucleotides. Modified oligonucleotides comprise at least one modification relative to unmodified RNA or DNA (i.e., comprise at least one modified nucleoside (comprising a modified sugar moiety and/or a modified nucleobase) and/or at least one modified intemucleoside linkage).
A. Modified Nucleosides
Modified nucleosides comprise a modified sugar moiety or a modified nucleobase or both a modifed sugar moiety and a modified nucleobase.
1. Modified Sugar Moieties
In certain embodiments, sugar moieties are non-bicyclic modified sugar moieties. In certain embodiments, modified sugar moieties are bicyclic or tricyclic sugar moieties. In certain embodiments, modified sugar moieties are sugar surrogates. Such sugar surrogates may comprise one or more substitutions corresponding to those of other types of modified sugar moieties.
In certain embodiments, modified sugar moieties are non-bicyclic modified furanosyl sugar moieties comprising one or more acyclic substituent, including, but not limited, to substituents at the 2’, 4’, and/or 5’ positions. In certain embodiments, the furanosyl sugar moiety is a ribosyl sugar moiety. In certain embodiments, one or more acyclic substituent of non-bicyclic modified sugar moieties is branched. Examples of 2’-substituent groups suitable for non-bicyclic modified sugar moieties include but are not limited to: 2’-F, 2'-OCH3 (“OMe” or “O-methyl”), and 2'-O(CH2)2OCH3<sub>=</sub>(“MOE”). In certain embodiments, 2’-substituent groups are selected from among: halo, allyl, amino, azido, SH, CN, OCN, CF3, OCF3, O-C1-C10 alkoxy, O-C1C10 substituted alkoxy, O-C1-C10 alkyl, O-C1-C10 substituted alkyl, S-alkyl, N(R<sub>m</sub>)-alkyl, O-alkenyl, S-alkenyl, N(R<sub>m</sub>)-alkenyl, O-alkynyl, S-alkynyl,N(R<sub>m</sub>)-alkynyl, O-alkylenyl-O-alkyl, alkynyl, alkaryl, aralkyl, O-alkaryl, O-aralkyl, O(CH2)2SCH3, O(CH2)2ON(R<sub>m</sub>)(Rn) or OCH2C(=O)-N(R<sub>m</sub>)(Rn), where each R<sub>m</sub> and R<sub>n</sub> is, independently, H, an amino protecting group, or substituted or unsubstituted C1-C10 alkyl, and the 2’-substituent groups described in Cook et al., U.S. 6,531,584; Cook et al., U.S. 5,859,221; and Cook et al., U.S. 6,005,087. Certain embodiments of these 2'-substituent groups can be further substituted with one or more substituent groups independently selected from among: hydroxyl, amino, alkoxy, carboxy, benzyl, phenyl, nitro (NO2), thiol, thioalkoxy, thioalkyl, halogen, alkyl, aryl, alkenyl and alkynyl. Examples of 4’-substituent groups suitable for linearly non-bicyclic modified sugar moieties include, but are not limited to, alkoxy (e.g., methoxy), alkyl, and those described in Manoharan et al., WO 2015/106128. Examples of 5’-substituent groups suitable for non-bicyclic modified sugar moieties include, but are not limited to: 5’-methyl (R or S), 5'-vinyl, and 5’methoxy. In certain embodiments, non-bicyclic modified sugars comprise more than one non-bridging sugar substituent, for example, 2'-F-5'-methyl sugar moieties and the modified sugar moieties and modified nucleosides described in Migawa et al., WO 2008/101157 and Rajeev et al., US2013/0203836.
In certain embodiments, a 2’-substituted nucleoside or 2’- non-bicyclic modified nucleoside comprises a sugar moiety comprising a linear 2’-substituent group selected from: F, NH2, N3, OCF3, OCH3, O(CH2)3NH2, CH2CH=CH2, OCH2CH=CH2, OCH2CH2OCH3, O(CH<sub>2</sub>)2SCH<sub>3</sub>, O(CH<sub>2</sub>)2ON(R<sub>m</sub>)(R<sub>n</sub>), O(CH2)2O(CH2)2N(CH<sub>3</sub>)2, and N-substituted acetamide (OCH2C(=O)-N(R<sub>m</sub>)(Rn)), where each R<sub>m</sub> and R<sub>n</sub> is, independently, H, an amino protecting group, or substituted or unsubstituted C1-C10 alkyl.
In certain embodiments, a 2’-substituted nucleoside or 2’- non-bicyclic modified nucleoside comprises a sugar moiety comprising a linear 2’-substituent group selected from: F, OCF3, OCH3, OCH2CH2OCH3, O(CH2)2SCH3, O(CH2)2ON(CH<sub>3</sub>)2, O(CH2)2O(CH2)2N(CH<sub>3</sub>)2, and OCH<sub>2</sub>C(=O)-N(H)CH<sub>3 </sub>(“NMA”).
In certain embodiments, a 2’-substituted nucleoside or 2’- non-bicyclic modified nucleoside comprises a sugar moiety comprising a linear 2’-substituent group selected from: F, OCH3, and OCH2CH2OCH3.
Nucleosides comprising modified sugar moieties, such as non-bicyclic modified sugar moieties, are referred to by the position(s) of the substitution(s) on the sugar moiety of the nucleoside. For example, nucleosides comprising 2’-substituted or 2’-modified sugar moieties are referred to as 2’-substituted nucleosides or 2’-modified nucleosides.
Certain modifed sugar moieties comprise a bridging sugar substituent that forms a second ring resulting in a bicyclic sugar moiety. In certain such embodiments, the bicyclic sugar moiety comprises a bridge between the 4' and the 2' furanose ring atoms. In certain such embodiments, the furanose ring is a ribose ring. Examples of such 4’ to 2’ bridging sugar substituents include, but are not limited to: 4'-CH2-2', 4'-(CH2)2-2', 4'(CH2)3-2', 4'-CH2-O-2' (“LNA”), 4'-CH<sub>2</sub>-S-2', 4'-(CH2)2-O-2' (“ENA”), 4'-CH(CH<sub>3</sub>)-O-2' (referred to as “constrained ethyl” or “cEt” when in the S configuration), 4’-CH2-O-CH2-2’, 4’-CH2-N(R)-2’, 4'CH(CH2OCH3)-O-2' (“constrained MOE” or “cMOE”) and analogs thereof (see, e.g., Seth et al., U.S. 7,399,845, Bhat et al., U.S. 7,569,686, Swayze et al., U.S. 7,741,457, and Swayze et al., U.S. 8,022,193), 4'C(CH3)(CH3)-O-2' and analogs thereof (see, e.g., Seth et al., U.S. 8,278,283), 4'-CH2-N(OCH3)-2' and analogs thereof (see, e.g., Prakash etal., U.S. 8,278,425), 4'-CH2־O-N(CH3)-2' (see, e.g., Allerson etal., U.S. 7,696,345 and Allerson et al., U.S. 8,124,745), 4'-CH2־C(H)(CH3)-2' (see, e.g., Zhou, etal., J. Org. Chem.,2009, 74, 118134), 4'-CH2-C(=CH2)-2' and analogs thereof (see e.g.״ Seth et al., U.S. 8,278,426), 4’-C(R<sub>a</sub>R<sub>b</sub>)-N(R)-O-2’, 4’C(RaRb)-O-N(R)-2’, 4'-CH2־O-N(R)-2', and 4'-CH2־N(R)-O-2', wherein each R, Ra, and Rt,is, independently, H, a protecting group, or C1-C12 alkyl (see, e.g. Imanishi et al., U.S. 7,427,672).
In certain embodiments, such 4’ to 2’ bridges independently comprise from 1 to 4 linked groups independently selected from: -[C(Ra)(Rb)]n-, -[C(Ra)(Rb)]n-O-, -C(Ra)=C(Rt>)-, -C(Ra)=N-, -C(=NRa)-, -C(=O), -C(=S)-, -O-, -S1(Ra)2-, -S(=O)<sub>X</sub>-, and -N(Ra)-;
wherein:
x is 0, 1, or 2;
n is 1, 2, 3, or 4;
each Ra and Rb is, independently, H, a protecting group, hydroxyl, C1-C12 alkyl, substituted C1-C12 alkyl, C2-C12 alkenyl, substituted C2-C12 alkenyl, C2-C12 alkynyl, substituted C2-C12 alkynyl, C5-C20 aryl, substituted C5-C20 aryl, heterocycle radical, substituted heterocycle radical, heteroaryl, substituted heteroaryl, C5-C7 alicyclic radical, substituted C5-C7 alicyclic radical, halogen, OJ1, NJ!J2, SJ1, N3, COOJ1, acyl (C(=O)H), substituted acyl, CN, sulfonyl (S(=0)2-J1), or sulfoxyl (S(=0)-J1); and each J! and J2 is, independently, H, C1-C12 alkyl, substituted C1-C12 alkyl, C2-C12 alkenyl, substituted C2-C12 alkenyl, C2-C12 alkynyl, substituted C2-C12 alkynyl, C5-C20 aryl, substituted C5-C20 aryl, acyl (C(=O)-H), substituted acyl, a heterocycle radical, a substituted heterocycle radical, C1-C12 aminoalkyl, substituted C1-C12 aminoalkyl, or a protecting group.
Additional bicyclic sugar moieties are known in the art, see, for example: Freier et al., Nucleic Acids Research, 1997, 25(22), 4429-4443, Albaek et al., J. Org. Chem., 2006, 71, 7731-7740, Singh et al., Chem. Commun., 1998, 4, 455-456; Koshkin et al., Tetrahedron, 1998, 54, 3607-3630; Wahlestedt et al., Proc. Natl. Acad. Sci. U. S. A., 2000, 97, 5633-5638; Kumar et al., Bioorg. Med. Chem. Lett., 1998, 8, 2219-2222; Singh et al., J. Org. Chem., 1998, 63, 10035-10039; Srivastava et al., J. Am. Chem. Soc., 2007, 129, 8362-8379;
Elayadi et al., Curr. Opinion Invens. Drugs, 2001, 2, 558-561; Braasch et al., Chem. Biol., 2001, 8, 1-7; Orum et al., Curr. Opinion Mol. Ther., 2001, 3, 239-243; Wengel et al.,U.S. 7,053,207, Imanishi et al., U.S. 6,268,490, Imanishi et al. U.S. 6,770,748, Imanishi et al., U.S. RE44,779; Wengel et al., U.S. 6,794,499, Wengel et al., U.S. 6,670,461; Wengel et al., U.S. 7,034,133, Wengel et al., U.S. 8,080,644; Wengel et al., U.S. 8,034,909; Wengel et al., U.S. 8,153,365; Wengel et al., U.S. 7,572,582; and Ramasamy et al., U.S. 6,525,191, Torsten et al., WO 2004/106356, Wengel et al., WO 1999/014226; Seth et al.,WO 2007/134181; Seth et al., U.S. 7,547,684; Seth et al., U.S. 7,666,854; Seth et al., U.S. 8,088,746; Seth et al., U.S. 7,750,131; Seth et al., U.S. 8,030,467; Seth et al., U.S. 8,268,980; Seth et al., U.S. 8,546,556; Seth et al., U.S. 8,530,640; Migawa et al., U.S. 9,012,421; Seth et al., U.S. 8,501,805; Allerson et al., US2008/0039618; and Migawa et al., US2015/0191727.
In certain embodiments, bicyclic sugar moieties and nucleosides incorporating such bicyclic sugar moieties are further defined by isomeric configuration. For example, an LNA nucleoside (described herein) may be in the a-L configuration or in the β-D configuration.
<img file="IL283072A_D0005.tif" />
LNA (β-D-configuration) a-Z-LNA (a-Z-configuration) bridge = 4'-CH<sub>2</sub>-O-2' bridge - 4'-CH<sub>2</sub>-O-2׳ a-L-methyleneoxy (4’-CH2-O-2’) or a-L-LNA bicyclic nucleosides have been incorporated into oligonucleotides that showed antisense activity (Frieden et al., Nucleic Acids Research, 2003, 21, 6365-6372). Herein, general descriptions of bicyclic nucleosides include both isomeric configurations. When the positions of specific bicyclic nucleosides (e.g., LNA or cEt) are identified in exemplified embodiments herein, they are in the β-D configuration, unless otherwise specified.
In certain embodiments, modified sugar moieties comprise one or more non-bridging sugar substituent and one or more bridging sugar substituent (e.g., 5’-substituted and 4’-2’ bridged sugars).
In certain embodiments, modified sugar moieties are sugar surrogates. In certain such embodiments, the oxygen atom of the sugar moiety is replaced, e.g., with a sulfur, carbon or nitrogen atom. In certain such embodiments, such modified sugar moieties also comprise bridging and/or non-bridging substituents as described herein. For example, certain sugar surrogates comprise a 4’-sulfi1r atom and a substitution at the 2'position (see, e.g., Bhat et al., U.S. 7,875,733 and Bhat et al., U.S. 7,939,677) and/or the 5’ position.
In certain embodiments, sugar surrogates comprise rings having other than 5 atoms. For example, in certain embodiments, a sugar surrogate comprises a six-membered tetrahydropyran (“ΊΉΡ”). Such tetrahydropyrans may be further modified or substituted. Nucleosides comprising such modified tetrahydropyrans include, but are not limited to, hexitol nucleic acid (“HNA”), anitol nucleic acid (“ANA”), manitol nucleic acid (“MNA”) (see e.g., Leumann, CJ. Bioorg. &Med. Chem. 2002,10, 841-854), fluoro HNA:
<img file="IL283072A_D0006.tif" />
F-HNA (“F-HNA”, see e.g., Swayze et al., U.S. 8,088,904; Swayze et al., U.S. 8,440,803; and Swayze et al., U.S. 9,005,906) F-HNA can also be referred to as a F-THP or 3'-fluoro tetrahydropyran, and nucleosides comprising additional modified THP compounds having the formula:
<img file="IL283072A_D0007.tif" />
wherein, independently, for each of said modified THP nucleoside:
Bx is a nucleobase moiety;
T3 and T4 are each, independently, an intemucleoside linking group linking the modified THP nucleoside to the remainder of an oligonucleotide or one of T3 and T4 is an intemucleoside linking group linking the modified THP nucleoside to the remainder of an oligonucleotide and the other of T3 and T4 is H, a hydroxyl protecting group, a linked conjugate group, or a 5' or 3'-terminal group; qi, q2, q3, q4, q5, q6and q7 are each, independently, H, C1-C6 alkyl, substituted C1-C6 alkyl, C2-C6 alkenyl, substituted C2-C6 alkenyl, C2-C6 alkynyl, or substituted C2-C6 alkynyl; and each of R! and R2 is independently selected from among: hydrogen, halogen, substituted or unsubstituted alkoxy, NJ!J2, SJ1, N3, OC(=X)J1, OC(=X)NJ!J2, NJ3C(=X)NJ!J2, and CN, wherein X is O, S or NJ1, and each J!, J2, and J3 is, independently, H or C1-C6 alkyl.
In certain embodiments, modified THP nucleosides are provided wherein q!, q2, q3, q4, q5, q6 and q7 are each H. In certain embodiments, at least one of qi, q2, q3, q4, q5, q6 and q7 is other than H. In certain embodiments, at least one of qi, q2, q3, q4, q5, q6 and q7 is methyl. In certain embodiments, modified THP nucleosides are provided wherein one of R! and R2 is F. In certain embodiments, R! is F and R2 is H, in certain embodiments, R! is methoxy and R2 is H, and in certain embodiments, R! is methoxyethoxy and R2 is H.
In certain embodiments, sugar surrogates comprise rings having more than 5 atoms and more than one heteroatom. For example, nucleosides comprising morpholino sugar moieties and their use in oligonucleotides have been reported (see, e.g., Braasch et al., Biochemistry, 2002, 41, 4503-4510 and Summerton et al., U.S. 5,698,685; Summerton et al., U.S. 5,166,315; Summerton et al., U.S. 5,185,444; and Summerton et al., U.S. 5,034,506). As used here, the term “morpholino” means a sugar surrogate having the following structure:
<img file="IL283072A_D0008.tif" />
N
I »/VW
In certain embodiments, morpholines may be modified, for example, by adding or altering various substituent groups from the above morpholino structure. Such sugar surrogates are refered to herein as “modifed morpholinos.”
In certain embodiments, sugar surrogates comprise acyclic moieites. Examples of nucleosides and oligonucleotides comprising such acyclic sugar surrogates include, but are not limited to: peptide nucleic acid (“PNA”), acyclic butyl nucleic acid (see, e.g., Kumar et al., Org. Biomol. Chem., 2013, 11, 5853-5865), and nucleosides and oligonucleotides described in Manoharan et al., US2013/130378.
Many other bicyclic and tricyclic sugar and sugar surrogate ring systems are known in the art that can be used in modified nucleosides.
2. Modified Nucleobases
Nucleobase (or base) modifications or substitutions are structurally distinguishable from, yet functionally interchangeable with, naturally occurring or synthetic unmodified nucleobases. Both natural and modified nucleobases are capable of participating in hydrogen bonding. Such nucleobase modifications can impart nuclease stability, binding affinity or some other beneficial biological property to antisense compounds.
In certain embodiments, compounds described herein comprise modified oligonucleotides. In certain embodiments, modified oligonucleotides comprise one or more nucleoside comprising an unmodified nucleobase. In certain embodiments, modified oligonucleotides comprise one or more nucleoside comprising a modified nucleobase. In certain embodiments, modified oligonucleotides comprise one or more nucleosides that does not comprise a nucleobase, referred to as an abasic nucleoside.
In certain embodiments, modified nucleobases are selected from: 5-substituted pyrimidines, 6azapyrimidines, alkyl or alkynyl substituted pyrimidines, alkyl substituted purines, and N-2, N-6 and 0-6 substituted purines. In certain embodiments, modified nucleobases are selected from: 2-aminopropyladenine, 5-hydroxymethyl cytosine, 5-methylcytosine, xanthine, hypoxanthine, 2-aminoadenine, 6-N-methylguanine, 6-N-methyladenine, 2-propyladenine , 2-thiouracil, 2-thiothymine and 2-thiocytosine, 5-propynyl (C=C-CH3) uracil, 5-propynylcytosine, 6-azouracil, 6-azocytosine, 6-azothymine, 5-ribosyluracil (pseudouracil), 4thiouracil, 8-halo, 8-amino, 8-thiol, 8-thioalkyl, 8-hydroxyl, 8-aza and other 8-substituted purines, 5-halo, particularly, 5-bromo, 5-trifluoromethyl, 5-halouracil, and 5-halocytosine, 7-methylguanine, 7-methyladenine, 2-F-adenine, 2-aminoadenine, 7-deazaguanine, 7-deazaadenine, 3-deazaguanine, 3-deazaadenine, 6-Nbenzoyladenine, 2-N-isobutyrylguanine, 4-N-benzoylcytosine, 4-N-benzoyluracil, 5-methyl 4-Nbenzoylcytosine, 5-methyl 4-N-benzoyluracil, universal bases, hydrophobic bases, promiscuous bases, sizeexpanded bases, and fluorinated bases. Further modified nucleobases include tricyclic pyrimidines, such as 1,3 diazaphenoxazine-2-one, l,3-diazaphenothiazine-2-one, and 9-(2-aminoethoxy)-l,3-diazaphenoxazine-2-one (G-clamp). Modified nucleobases may also include those in which the purine or pyrimidine base is replaced with other heterocycles, for example, 7-deaza-adenine, 7-deazaguanosine, 2-aminopyridine and 2-pyridone. Further nucleobases include those disclosed in Merigan et al., U.S. 3,687,808, those disclosed in The Concise Encyclopedia Of Polymer Science And Engineering, Kroschwitz, J.I., Ed., John Wiley & Sons, 1990, 858-859; Englisch et al., Angewandte Chemie, International Edition, 1991,30,613; Sanghvi, Y.S., Chapter 15, Antisense Research and Applications, Crooke, S.T. and Lebleu, B., Eds., CRC Press, 1993, 273-288; and those disclosed in Chapters 6 and 15, Antisense Drug Technology, Crooke S.T., Ed., CRC Press, 2008, 163-166 and 442-443.
Publications that teach the preparation of certain of the above noted modified nucleobases, as well as other modified nucleobases include without limitation, Manoharan et al., US2003/0158403, Manoharan et al., US2003/0175906; Dinh et al., U.S. 4,845,205; Spielvogel et al., U.S. 5,130,302; Rogers et al., U.S. 5,134,066; Bischofberger et al., U.S. 5,175,273; Urdea et al., U.S. 5,367,066; Benner et al., U.S. 5,432,272; Matteucci et al., U.S. 5,434,257; Gmeiner et al., U.S. 5,457,187; Cook et al., U.S. 5,459,255; Froehler etal., U.S. 5,484,908; Matteucci et al., U.S. 5,502,177; Hawkins et al., U.S. 5,525,711; Haralambidis et al., U.S. 5,552,540; Cook et al., U.S. 5,587,469; Froehleretal., U.S. 5,594,121; Switzeret al., U.S. 5,596,091; Cooketal., U.S. 5,614,617; Froehler et al., U.S. 5,645,985; Cook et al., U.S. 5,681,941; Cook et al., U.S. 5,811,534; Cook et al., U.S. 5,750,692; Cook et al., U.S. 5,948,903; Cook et al., U.S. 5,587,470; Cook et al., U.S. 5,457,191; Matteucci et al., U.S. 5,763,588; Froehler et al., U.S. 5,830,653; Cook et al., U.S. 5,808,027; Cook et al., U.S. 6,166,199; and Matteucci et al., U.S. 6,005,096.
In certain embodiments, compounds targeted to a IRF5 nucleic acid comprise one or more modified nucleobases. In certain embodiments, the modified nucleobase is 5-methylcytosine. In certain embodiments, each cytosine is a 5-methylcytosine.
Modified Internucleoside Linkages
The naturally occuring intemucleoside linkage of RNA and DNA is a 3' to 5' phosphodiester linkage. In certain embodiments, compounds described herein having one or more modified, i.e. non-naturally occurring, intemucleoside linkages are often selected over compounds having naturally occurring intemucleoside linkages because of desirable properties such as, for example, enhanced cellular uptake, enhanced affinity for target nucleic acids, and increased stability in the presence of nucleases.
Representative intemucleoside linkages having a chiral center include but are not limited to alkylphosphonates and phosphorothioates. Modified oligonucleotides comprising intemucleoside linkages having a chiral center can be prepared as populations of modified oligonucleotides comprising stereorandom intemucleoside linkages, or as populations of modified oligonucleotides comprising phosphorothioate linkages in particular stereochemical configurations. In certain embodiments, populations of modified oligonucleotides comprise phosphorothioate intemucleoside linkages wherein all of the phosphorothioate intemucleoside linkages are stereorandom. Such modified oligonucleotides can be generated using synthetic methods that result in random selection of the stereochemical configuration of each phosphorothioate linkage. Nonetheless, as is well understood by those of skill in the art, each individual phosphorothioate of each individual oligonucleotide molecule has a defined stereoconfiguration. In certain embodiments, populations of modified oligonucleotides are enriched for modified oligonucleotides comprising one or more particular phosphorothioate intemucleoside linkages in a particular, independently selected stereochemical configuration. In certain embodiments, the particular configuration of the particular phosphorothioate linkage is present in at least 65% of the molecules in the population. In certain embodiments, the particular configuration of the particular phosphorothioate linkage is present in at least 70% of the molecules in the population. In certain embodiments, the particular configuration of the particular phosphorothioate linkage is present in at least 80% of the molecules in the population. In certain embodiments, the particular configuration of the particular phosphorothioate linkage is present in at least 90% of the molecules in the population. In certain embodiments, the particular configuration of the particular phosphorothioate linkage is present in at least 99% of the molecules in the population. Such chirally enriched populations of modified oligonucleotides can be generated using synthetic methods known in the art, e.g., methods described in Oka et al., JACS 125, 8307 (2003), Wan et al. Nuc. Acid. Res. 42, 13456 (2014), and WO 2017/015555. In certain embodiments, a population of modified oligonucleotides is enriched for modified oligonucleotides having at least one indicated phosphorothioate in the (Sp) configuration. In certain embodiments, a population of modified oligonucleotides is enriched for modified oligonucleotides having at least one phosphorothioate in the (Rp) configuration. In certain embodiments, modified oligonucleotides comprising (Rp) and/or (Sp) phosphorothioates comprise one or more of the following formulas, respectively, wherein “B” indicates a nucleobase:
<img file="IL283072A_D0009.tif" />
<img file="IL283072A_D0010.tif" />
<img file="IL283072A_D0011.tif" />
Unless otherwise indicated, chiral intemucleoside linkages of modified oligonucleotides described herein can be stereorandom or in a particular stereochemical configuration.
In certain embodiments, compounds targeted to a IRF5 nucleic acid comprise one or more modified intemucleoside linkages. In certain embodiments, the modified intemucleoside linkages are phosphorothioate linkages. In certain embodiments, each intemucleoside linkage of an antisense compound is a phosphorothioate intemucleoside linkage.
In certain embodiments, compounds described herein comprise oligonucleotides. Oligonucleotides having modified intemucleoside linkages include intemucleoside linkages that retain a phosphorus atom as well as intemucleoside linkages that do not have a phosphorus atom. Representative phosphorus containing intemucleoside linkages include, but are not limited to, phosphodiesters, phosphotriesters, methylphosphonates, phosphoramidate, and phosphorothioates. Methods of preparation of phosphorouscontaining and non-phosphorous-containing linkages are well known.
In certain embodiments, nucleosides of modified oligonucleotides may be linked together using any intemucleoside linkage. The two main classes of intemucleoside linking groups are defined by the presence or absence of aphosphoms atom. Representative phosphoms-containing intemucleoside linkages include, but are not limited to, phosphates, which contain a phosphodiester bond (“P=O”) (also referred to as unmodified or naturally occurring linkages), phosphotriesters, methylphosphonates, phosphoramidates, and phosphorothioates (“P=S”), and phosphorodithioates (“HS-P=S”). Representative non-phosphoms containing intemucleoside linking groups include, but are not limited to, methylenemethylimino (-CH2־N(CH3)-O-CH2), thiodiester, thionocarbamate (-O-C(=O)(NH)-S-); siloxane (-O-SiH2-O-); and Ν,Ν'-dimethylhydrazine (-CH2N(CH3)-N(CH3)-). Modified intemucleoside linkages, compared to naturally occurring phosphate linkages, can be used to alter, typically increase, nuclease resistance of the oligonucleotide. In certain embodiments, intemucleoside linkages having a chiral atom can be prepared as a racemic mixture, or as separate enantiomers. Representative chiral intemucleoside linkages include, but are not limited to, alkylphosphonates and phosphorothioates. Methods of preparation of phosphorous-containing and non-phosphorous-containing intemucleoside linkages are well known to those skilled in the art.
Neutral intemucleoside linkages include, without limitation, phosphotriesters, methylphosphonates, MMI (3'-CH2-N(CH3)-O-5'), amide-3 (3'-CH2-C(=O)-N(H)-5'), amide-4 (3'-CH2-N(H)-C(=O)-5'), formacetal (3'-O-CH2-O-5'), methoxypropyl, and thioformacetal (3'-S-CH2-O-5'). Further neutral intemucleoside linkages include nonionic linkages comprising siloxane (dialkylsiloxane), carboxylate ester, carboxamide, sulfide, sulfonate ester and amides (See, for example: Carbohydrate Modifications in Antisense Research; Y.S. Sanghvi and P.D. Cook, Eds., ACS Symposium Series 580; Chapters 3 and 4, 40-65). Further neutral intemucleoside linkages include nonionic linkages comprising mixed N, O, S and CH2 component parts.
In certain embodiments, oligonucleotides comprise modified intemucleoside linkages arranged along the oligonucleotide or region thereof in a defined pattern or modified intemucleoside linkage motif. In certain embodiments, intemucleoside linkages are arranged in a gapped motif. In such embodiments, the intemucleoside linkages in each of two wing regions are different from the intemucleoside linkages in the gap region. In certain embodiments, the intemucleoside linkages in the wings are phosphodiester and the intemucleoside linkages in the gap are phosphorothioate. The nucleoside motif is independently selected, so such oligonucleotides having a gapped intemucleoside linkage motif may or may not have a gapped nucleoside motif and, if it does have a gapped nucleoside motif, the wing and gap lengths may or may not be the same.
In certain embodiments, oligonucleotides comprise a region having an alternating intemucleoside linkage motif. In certain embodiments, oligonucleotides comprise a region of uniformly modified intemucleoside linkages. In certain such embodiments, the oligonucleotide comprises a region that is uniformly linked by phosphorothioate intemucleoside linkages. In certain embodiments, the oligonucleotide is uniformly linked by phosphorothioate. In certain embodiments, each intemucleoside linkage of the oligonucleotide is selected from phosphodiester and phosphorothioate. In certain embodiments, each intemucleoside linkage of the oligonucleotide is selected from phosphodiester and phosphorothioate and at least one intemucleoside linkage is phosphorothioate.
In certain embodiments, the oligonucleotide comprises at least 6 phosphorothioate intemucleoside linkages. In certain embodiments, the oligonucleotide comprises at least 8 phosphorothioate intemucleoside linkages. In certain embodiments, the oligonucleotide comprises at least 10 phosphorothioate intemucleoside linkages. In certain embodiments, the oligonucleotide comprises at least one block of at least 6 consecutive phosphorothioate intemucleoside linkages. In certain embodiments, the oligonucleotide comprises at least one block of at least 8 consecutive phosphorothioate intemucleoside linkages. In certain embodiments, the oligonucleotide comprises at least one block of at least 10 consecutive phosphorothioate intemucleoside linkages. In certain embodiments, the oligonucleotide comprises at least block of at least one 12 consecutive phosphorothioate intemucleoside linkages. In certain such embodiments, at least one such block is located at the 3’ end of the oligonucleotide. In certain such embodiments, at least one such block is located within 3 nucleosides of the 3’ end of the oligonucleotide.
In certain embodiments, oligonucleotides comprise one or more methylphosphonate linkages. In certain embodiments, oligonucleotides having a gapmer nucleoside motif comprise a linkage motif comprising all phosphorothioate linkages except for one or two methylphosphonate linkages. In certain embodiments, one methylphosphonate linkage is in the central gap of an oligonucleotide having a gapmer nucleoside motif.
In certain embodiments, it is desirable to arrange the number of phosphorothioate intemucleoside linkages and phosphodiester intemucleoside linkages to maintain nuclease resistance. In certain embodiments, it is desirable to arrange the number and position of phosphorothioate intemucleoside linkages and the number and position of phosphodiester intemucleoside linkages to maintain nuclease resistance. In certain embodiments, the number of phosphorothioate intemucleoside linkages may be decreased and the number of phosphodiester intemucleoside linkages may be increased. In certain embodiments, the number of phosphorothioate intemucleoside linkages may be decreased and the number of phosphodiester intemucleoside linkages may be increased while still maintaining nuclease resistance. In certain embodiments, it is desirable to decrease the number of phosphorothioate intemucleoside linkages while retaining nuclease resistance. In certain embodiments, it is desirable to increase the number of phosphodiester intemucleoside linkages while retaining nuclease resistance.
3. Certain Motifs
In certain embodiments, compounds described herein comprise oligonucleotides. Oligonucleotides can have a motif, e.g. a pattern of unmodified and/or modified sugar moieties, nucleobases, and/or intemucleoside linkages. In certain embodiments, modified oligonucleotides comprise one or more modified nucleosides comprising a modified sugar. In certain embodiments, modified oligonucleotides comprise one or more modified nucleosides comprising a modified nucleobase. In certain embodiments, modified oligonucleotides comprise one or more modified intemucleoside linkage. In such embodiments, the modified, unmodified, and differently modified sugar moieties, nucleobases, and/or intemucleoside linkages of a modified oligonucleotide define a pattern or motif. In certain embodiments, the patterns of sugar moieties, nucleobases, and intemucleoside linkages are each independent of one another. Thus, a modified oligonucleotide may be described by its sugar motif, nucleobase motif and/or intemucleoside linkage motif (as used herein, nucleobase motif describes the modifications to the nucleobases independent of the sequence of nucleobases).
a. Certain Sugar Motifs
In certain embodiments, compounds described herein comprise oligonucleotides. In certain embodiments, oligonucleotides comprise one or more type of modified sugar and/or unmodified sugar moiety arranged along the oligonucleotide or region thereof in a defined pattern or sugar motif. In certain instances, such sugar motifs include, but are not limited to, any of the sugar modifications discussed herein.
In certain embodiments, modified oligonucleotides comprise or consist of a region having a gapmer motif, which comprises two external regions or “wings” and a central or internal region or “gap”. Hie three regions of a gapmer motif (the 5’-wing, the gap, and the 3’-wing) form a contiguous sequence of nucleosides, wherein at least some of the sugar moieties of the nucleosides of each of the wings differ from at least some of the sugar moieties of the nucleosides of the gap. Specifically, at least the sugar moieties of the nucleosides of each wing that are closest to the gap (the 3’-most nucleoside of the 5’-wing and the 5’-most nucleoside of the 3’-wing) differ from the sugar moiety of the neighboring gap nucleosides, thus defining the boundary between the wings and the gap (i.e., the wing/gap junction). In certain embodiments, the sugar moieties within the gap are the same as one another. In certain embodiments, the gap includes one or more nucleosides having a sugar moiety that differs from the sugar moiety of one or more other nucleosides of the gap. In certain embodiments, the sugar motifs of the two wings are the same as one another (symmetric gapmer). In certain embodiments, the sugar motif of the 5'-wing differs from the sugar motif of the 3'-wing (asymmetric gapmer).
In certain embodiments, the wings of a gapmer comprise 1-5 nucleosides. In certain embodiments, the wings of a gapmer comprise 2-5 nucleosides. In certain embodiments, the wings of a gapmer comprise 3-5 nucleosides. In certain embodiments, the nucleosides of a gapmer are all modified nucleosides.
In certain embodiments, the gap of a gapmer comprises 7-12 nucleosides. In certain embodiments, the gap of a gapmer comprises 7-10 nucleosides. In certain embodiments, the gap of a gapmer comprises 8-10 nucleosides. In certain embodiments, the gap of a gapmer comprises 10 nucleosides. In certain embodiments, each nucleoside of the gap of a gapmer is an unmodified 2’-deoxy nucleoside.
In certain embodiments, the gapmer is a deoxy gapmer. In such embodiments, the nucleosides on the gap side of each wing/gap junction are unmodified 2’-deoxy nucleosides and the nucleosides on the wing sides of each wing/gap junction are modified nucleosides. In certain such embodiments, each nucleoside of the gap is an unmodified 2’-deoxy nucleoside. In certain such embodiments, each nucleoside of each wing is a modified nucleoside.
In certain embodiments, a modified oligonucleotide has a fully modified sugar motif wherein each nucleoside of the modified oligonucleotide comprises a modified sugar moiety. In certain embodiments, modified oligonucleotides comprise or consist of a region having a fully modified sugar motif wherein each nucleoside of the region comprises a modified sugar moiety. In certain embodiments, modified oligonucleotides comprise or consist of a region having a fully modified sugar motif, wherein each nucleoside within the fully modified region comprises the same modified sugar moiety, referred to herein as a uniformly modified sugar motif. In certain embodiments, a fully modified oligonucleotide is a uniformly modified oligonucleotide. In certain embodiments, each nucleoside of a uniformly modified comprises the same 2’modification.
b. Certain Nucleobase Motifs
In certain embodiments, compounds described herein comprise oligonucleotides. In certain embodiments, oligonucleotides comprise modified and/or unmodified nucleobases arranged along the oligonucleotide or region thereof in a defined pattern or motif. In certain embodiments, each nucleobase is modified. In certain embodiments, none of the nucleobases are modified. In certain embodiments, each purine or each pyrimidine is modified. In certain embodiments, each adenine is modified. In certain embodiments, each guanine is modified. In certain embodiments, each thymine is modified. In certain embodiments, each uracil is modified. In certain embodiments, each cytosine is modified. In certain embodiments, some or all of the cytosine nucleobases in a modified oligonucleotide are 5-methylcytosines.
In certain embodiments, modified oligonucleotides comprise a block of modified nucleobases. In certain such embodiments, the block is at the 3’-end of the oligonucleotide. In certain embodiments, the block is within 3 nucleosides of the 3’-end of the oligonucleotide. In certain embodiments, the block is at the 5’-end of the oligonucleotide. In certain embodiments, the block is within 3 nucleosides of the 5’-end of the oligonucleotide.
In certain embodiments, oligonucleotides having a gapmer motif comprise a nucleoside comprising a modified nucleobase. In certain such embodiments, one nucleoside comprising a modified nucleobase is in the central gap of an oligonucleotide having a gapmer motif. In certain such embodiments, the sugar moiety of said nucleoside is a 2’-deoxyribosyl moiety. In certain embodiments, the modified nucleobase is selected from: a 2thiopyrimidine and a 5-propynepyrimidine.
c. Certain Internucleoside Linkage Motifs
In certain embodiments, compounds described herein comprise oligonucleotides. In certain embodiments, oligonucleotides comprise modified and/or unmodified intemucleoside linkages arranged along the oligonucleotide or region thereof in a defined pattern or motif. In certain embodiments, essentially each intemucleoside linking group is a phosphate intemucleoside linkage (P=O). In certain embodiments, each intemucleoside linking group of a modified oligonucleotide is a phosphorothioate (P=S). In certain embodiments, each intemucleoside linking group of a modified oligonucleotide is independently selected from a phosphorothioate and phosphate intemucleoside linkage. In certain embodiments, the sugar motif of a modified oligonucleotide is a gapmer and the intemucleoside linkages within the gap are all modified. In certain such embodiments, some or all of the intemucleoside linkages in the wings are unmodified phosphate linkages. In certain embodiments, the terminal intemucleoside linkages are modified. In certain embodiments, the sugar motif of a modified oligonucleotide is a gapmer, and the intemucleoside linkage motif comprises at least one phosphodiester intemucleoside linkage in at least one wing, wherein the at least one phosphodiester linkage is not a terminal intemucleoside linkage, and the remaining intemucleoside linkages are phosphorothioate intemucleoside linkages. In certain such embodiments, all of the phosphorothioate linkages are stereorandom. In certain embodiments, all of the phosphorothioate linkages in the wings are (Sp) phosphorothioates, and the gap comprises at least one Sp, Sp, Λρ motif. In certain embodiments, populations of modified oligonucleotides are enriched for modified oligonucleotides comprising such intemucleoside linkage motifs.
4. Certain Modified Oligonucleotides
In certain embodiments, compounds described herein comprise modified oligonucleotides. In certain embodiments, the above modifications (sugar, nucleobase, intemucleoside linkage) are incorporated into a modified oligonucleotide. In certain embodiments, modified oligonucleotides are characterized by their modification, motifs, and overall lengths. In certain embodiments, such parameters are each independent of one another. Thus, unless otherwise indicated, each intemucleoside linkage of an oligonucleotide having a gapmer sugar motif may be modified or unmodified and may or may not follow the gapmer modification pattern of the sugar modifications. For example, the intemucleoside linkages within the wing regions of a sugar gapmer may be the same or different from one another and may be the same or different from the intemucleoside linkages of the gap region of the sugar motif. Likewise, such gapmer oligonucleotides may comprise one or more modified nucleobases independent of the gapmer pattern of the sugar modifications. Furthermore, in certain instances, an oligonucleotide is described by an overall length or range and by lengths or length ranges of two or more regions (e.g., a regions of nucleosides having specified sugar modifications). In such circumstances, it may be possible to select numbers for each range that result in an oligonucleotide having an overall length falling outside the specified range. In such circumstances, both elements must be satisfied. For example, in certain embodiments, a modified oligonucleotide consists of 15-20 linked nucleosides and has a sugar motif consisting of three regions, A, B, and C, wherein region A consists of 2-6 linked nucleosides having a specified sugar motif, region B consists of 6-10 linked nucleosides having a specified sugar motif, and region C consists of 2-6 linked nucleosides having a specified sugar motif. Such embodiments do not include modified oligonucleotides where A and C each consist of 6 linked nucleosides and B consists of 10 linked nucleosides (even though those numbers of nucleosides are permitted within the requirements for A, B, and C) because the overall length of such oligonucleotide will be 22, which exceeds the upper limit of the overall length of the modified oligonucleotide (20). Herein, if a description of an oligonucleotide is silent with respect to one or more parameters, such parameter is not limited. Thus, a modified oligonucleotide described only as having a gapmer sugar motif without further description may have any length, intemucleoside linkage motif, and nucleobase motif. Unless otherwise indicated, all modifications are independent of nucleobase sequence.
Certain Conjugated Compounds
In certain embodiments, the compounds described herein comprise or consist of an oligonucleotide (modified or unmodified) and, optionally, one or more conjugate groups and/or terminal groups. Conjugate groups consist of one or more conjugate moiety and a conjugate linker which links the conjugate moiety to the oligonucleotide. Conjugate groups may be attached to either or both ends of an oligonucleotide and/or at any internal position. In certain embodiments, conjugate groups are attached to the 2'-position of a nucleoside of a modified oligonucleotide. In certain embodiments, conjugate groups that are attached to either or both ends of an oligonucleotide are terminal groups. In certain such embodiments, conjugate groups or terminal groups are attached at the 3’ and/or 5’-end of oligonucleotides. In certain such embodiments, conjugate groups (or terminal groups) are attached at the 3’-end of oligonucleotides. In certain embodiments, conjugate groups are attached near the 3’-end of oligonucleotides. In certain embodiments, conjugate groups (or terminal groups) are attached at the 5’-end of oligonucleotides. In certain embodiments, conjugate groups are attached near the 5’-end of oligonucleotides.
In certain embodiments, the oligonucleotide is modified. In certain embodiments, the oligonucleotide of a compound has a nucleobase sequence that is complementary to a target nucleic acid. In certain embodiments, oligonucleotides are complementary to a messenger RNA (mRNA). In certain embodiments, oligonucleotides are complementary to a pre-mRNA. In certain embodiments, oligonucleotides are complementary to a sense transcript.
Examples of terminal groups include but are not limited to conjugate groups, capping groups, phosphate moieties, protecting groups, modified or unmodified nucleosides, and two or more nucleosides that are independently modified or unmodified.
Compositions and Methods for Formulating Pharmaceutical Compositions
Compounds described herein may be admixed with pharmaceutically acceptable active or inert substances for the preparation of pharmaceutical compositions or formulations. Compositions and methods for the formulation of pharmaceutical compositions are dependent upon a number of criteria, including, but not limited to, route of administration, extent of disease, or dose to be administered.
Certain embodiments provide pharmaceutical compositions comprising one or more compounds or a salt thereof. In certain embodiments, the compounds are antisense compounds or oligomeric compounds. In certain embodiments, the compounds comprise or consist of a modified oligonucleotide. In certain such embodiments, the pharmaceutical composition comprises a suitable pharmaceutically acceptable diluent or carrier. In certain embodiments, a pharmaceutical composition comprises a sterile saline solution and one or more compound. In certain embodiments, such pharmaceutical composition consists of a sterile saline solution and one or more compound. In certain embodiments, the sterile saline is pharmaceutical grade saline. In certain embodiments, a pharmaceutical composition comprises one or more compound and sterile water. In certain embodiments, a pharmaceutical composition consists of one compound and sterile water. In certain embodiments, the sterile water is pharmaceutical grade water. In certain embodiments, a pharmaceutical composition comprises one or more compounds and phosphate-buffered saline (PBS). In certain embodiments, a pharmaceutical composition consists of one or more compound and sterile PBS. In certain embodiments, the sterile PBS is pharmaceutical grade PBS. Compositions and methods for the formulation of pharmaceutical compositions are dependent upon a number of criteria, including, but not limited to, route of administration, extent of disease, or dose to be administered.
A compound described herein targeted to IRF5 nucleic acid can be utilized in pharmaceutical compositions by combining the compound with a suitable pharmaceutically acceptable diluent or carrier. In certain embodiments, a pharmaceutically acceptable diluent is water, such as sterile water suitable for injection. Accordingly, in one embodiment, employed in the methods described herein is a pharmaceutical composition comprising a compound targeted to IRF5 nucleic acid and a pharmaceutically acceptable diluent. In certain embodiments, the pharmaceutically acceptable diluent is water. In certain embodiments, the compound comprises or consists of a modified oligonucleotide provided herein.
Pharmaceutical compositions comprising compounds provided herein encompass any pharmaceutically acceptable salts, esters, or salts of such esters, or any other oligonucleotide which, upon administration to an animal, including a human, is capable of providing (directly or indirectly) the biologically active metabolite or residue thereof. In certain embodiments, the compounds are antisense compounds or oligomeric compounds. In certain embodiments, the compound comprises or consists of a modified oligonucleotide. Accordingly, for example, the disclosure is also drawn to pharmaceutically acceptable salts of compounds, prodrugs, pharmaceutically acceptable salts of such prodrugs, and other bioequivalents. Suitable pharmaceutically acceptable salts include, but are not limited to, sodium and potassium salts.
A prodrug can include the incorporation of additional nucleosides at one or both ends of a compound which are cleaved by endogenous nucleases within the body, to form the active compound.
In certain embodiments, the compounds or compositions further comprise a pharmaceutically acceptable carrier or diluent.
Certain Selected Compounds
Approximately 1,320 newly designed compounds of various lengths, chemistries, and motifs were tested for their effect on human IRF5 mRNA in vitro in several cell types (Examples 1 and 2). Of 1,320 compounds tested for potency at a single dose in vitro, over 110 selected compounds were tested for dose dependent inhibition in THP-1 cells, as well as in KARPAS-229 cells (Example 3).
These oligonucleotides were then tested for tolerability in preclinical rodent models (Examples 4 and 5). Body weights and organ weights, liver function markers (such as alanine transaminase, aspartate transaminase and bilirubin), hematology markers (such as hemoglobin and hematocrit levels, as well as individual blood cell counts), and kidney function markers (such as BUN and creatinine) were measured. Of the over 110 compounds tested by dose response assays, 53 compounds were further screened for tolerability in a a CD-I mouse model. Nineteen oligonucleotides were further screened in the Sprague-Dawley rat model.
Twelve compounds were then selected and tested in a mouse xenograft model, where the mice were inoculated with human non-Hodgkin’s Large Cell Lymphoma (KARPAS-229) cells and treated with the compounds (Example 6). The efficacy and tolerability of the compounds were then tested. Eight compounds were then selected to be tested for efficacy at two separate doses in an IRF5 transgenic mouse model (Example 7).
IDNs 729018, 728958, 785525, 785674, 785675, 786503, 786524, and 786548 were tested for tolerability in cynomolgus monkeys (Example 8). Treatment with the compounds was well tolerated in the monkeys, in particular, treatment with ION 729018. Further analysis was done with these compounds, including measuring for viscosity, evaluation of proinflammatory effects, and dose-dependent inhibition confirmation assays.
Modified oligonucleotides with different chemistry modifications were also designed overlapping the target regions of three compounds, lONs 729018, 786503, and 785675 (Example 13). These newly designed compounds along with the three parent oligonucleotides were tested in a multi-dose assay. Many of the newly designed compounds demonstrated strong efficacy in inhibiting IRF5.
Accordingly, provided herein are compounds with any one or more of the improved properties. In certain embodiments, the compounds as described herein are potent and tolerable.
EXAMPLES
The Examples below describe the screening process to identify lead compounds targeted to IRF5.
ION 728958, 729018, 785525, 785674, 785675, 786503,786524,and 786548 resulted in high potency and tolerability. For instance, ION 729018 exhibited high potency and tolerability.
Non-limiting disclosure and incorporation by reference
Although the sequence listing accompanying this filing identifies each sequence as either “RNA” or “DNA” as required, those sequences may be modified with any combination of chemical modifications. One of skill in the art will readily appreciate that such designation as “RNA” or “DNA” to describe modified oligonucleotides is, in certain instances, arbitrary. For example, an oligonucleotide comprising a nucleoside comprising a 2’-OH sugar moiety and a thymine base could be described as a DNA having a modified sugar (2’-OH for the natural 2’-H of DNA) or as an RNA having a modified base (thymine (methylated uracil) for natural uracil of RNA).
Accordingly, nucleic acid sequences provided herein, including, but not limited to, those in the sequence listing, are intended to encompass nucleic acids containing any combination of natural or modified RNA and/or DNA, including, but not limited to, such nucleic acids having modified nucleobases. By way of further example and without limitation, an oligonucleotide having the nucleobase sequence “ATCGATCG” encompasses any oligonucleotides having such nucleobase sequence, whether modified or unmodified, including, but not limited to, such compounds comprising RNA bases, such as those having sequence “AUCGAUCG” and those having some DNA bases and some RNA bases such as “AUCGATCG” and compounds having other modified nucleobases, such as “AT<sup>m</sup>CGAUCG,” wherein <sup>m</sup>C indicates a cytosine base comprising a methyl group at the 5-position.
Certain compounds described herein (e.g. modified oligonucleotides) have one or more asymmetric centers and thus give rise to enantiomers, diastereomers, and other stereoisomeric configurations that may be defined, in terms of absolute stereochemistry, as (R) or (S), as a or β, such as for sugar anomers, or as (D) or (L), such as for amino acids, etc. Compounds provided herein that are drawn or described as having certain stereoisomeric configurations include only the indicated compounds. Compounds provided herein that are drawn or described with undefined stereochemistry include all such possible isomers, including their stereorandom and optically pure forms. Likewise, all tautomeric forms of the compounds provided herein are included unless otherwise indicated. Unless otherwise indicated, oligomeric compounds and modified oligonucleotides described herein are intended to include corresponding salt forms.
Compounds described herein include variations in which one or more atoms are replaced with a nonradioactive isotope or radioactive isotope of the indicated element. For example, compounds herein that comprise hydrogen atoms encompass all possible deuterium substitutions for each of the <sup>1</sup>H hydrogen atoms. Isotopic substitutions encompassed by the compounds herein include but are not limited to: <sup>2</sup>H or <sup>3</sup>H in place of <sup>1</sup>H, <sup>13</sup>C or <sup>14</sup>C in place of <sup>12</sup>C, <sup>15</sup>N in place of <sup>14</sup>N, <sup>17</sup>O or <sup>18</sup>O in place of <sup>16</sup>O, and <sup>33</sup>S, <sup>34</sup>S, <sup>35</sup>S, or <sup>36</sup>S in place of<sup>32</sup>S.
While certain compounds, compositions and methods described herein have been described with specificity in accordance with certain embodiments, the following examples serve only to illustrate the compounds described herein and are not intended to limit the same. Each of the references recited in the present application is incorporated herein by reference in its entirety.
Example 1: Antisense inhibition of human IRF5 in THP-1 cells by cEt gapmers
Modified oligonucleotides were designed to target an IRF5 nucleic acid and were tested fortheir effect on IRF5 RNA levels in vitro, !<sup>,</sup>he modified oligonucleotides were tested in a series of experiments that had similar culture conditions. Hie results for each experiment are presented in separate tables shown below.
The newly designed modified oligonucleotides in the Tables below were designed as 3-10-3 cEt gapmers. Hie gapmers are 16 nucleosides in length, wherein the central gap segment comprises of ten 2’deoxynucleosides and is flanked by wing segments on the 5 ’ direction and the 3 ’ direction comprising three nucleosides each. Each nucleoside in the 5’ wing segment and each nucleoside in the 3’ wing segment has a cEt sugar modification. Hie intemucleoside linkages throughout each gapmer are phosphorothioate (P=S) linkages. All cytosine residues throughout each gapmer are 5-methylcytosines.
“Start site” indicates the 5’-most nucleoside to which the gapmer is targeted in the human gene sequence. “Stop site” indicates the 3’-most nucleoside to which the gapmer is targeted in the human gene sequence. Most of the modified oligonucleotide listed in the Tables below are targeted to either human IRF5 mRNA, designated herein as SEQ ID NO: 1 (GENBANK Accession No. NM_001098627.3) orto human IRF5 genomic sequence, designated herein as SEQ ID NO: 2 (GENBANK Accession No. NT_007933.14 tmncated from nucleotides 53761170 to 53774065). In addition, a small number of modified oligonucleotides are targeted to IRF5 mRNA designated herein as SEQ ID No: 3 (GENBANK Accession No. NM_001098629.1). ‘N/A’ indicates that the modified oligonucleotide does not target that gene sequence with 100% complementarity.
Cultured THP-1 cells at a density of 30,000 cells per well were transfected using electroporation with 2,000 nM of modified oligonucleotide. After a treatment period of approximately 24 hours, RNA was isolated from the cells and IRF5 RNA levels were measured by quantitative real-time RTPCR. Human primer probe set HTS4167 (forward sequence GCCAAGGAGACAGGGAAATACA, designated herein as SEQ ID NO: 11; reverse sequence GCAGGTTGGCCTTCCACTT; designated herein as SEQ ID NO: 12; probe sequence CGAAGGCGTGGATGAAGCCGATC, designated herein as SEQ ID NO: 13) was used to measure RNA levels. IRF5 RNA levels were adjusted according to total RNA content, as measured by RIBOGREEN®. Results are presented as percent inhibition of IRF5 relative to untreated control cells. As used herein, a value of ‘0’ indicates that treatment with the modified oligonucleotide did not inhibit IRF5 mRNA levels. ‘N.D.’ indicates that the % inhibition is not defined for that modified oligonucleotide in that experiment. Activity of that modified oligonucleotide may be defined in a different experiment.
Table 1
Inhibition of IRF5 RNA by 3-10-3 cEt gapmers targeting SEQ ID NO: 1 and 2
<td> Compound Number</td><td> SEQ ID NO: 1 Start Site</td><td> SEQ ID NO: 1 Stop Site</td><td> SEQ ID NO: 2 Start Site</td><td> SEQ ID NO: 2 Stop Site</td><td> Sequence (5' to 3')</td><td> IRF5 (% Inhibition)</td><td> SEQ ID NO</td>
<td> 665773</td><td> N/A</td><td> N/A</td><td> 4534</td><td> 4549</td><td> GGTTCATGGCAGAGGG</td><td> 46</td><td> 37</td>
<td> 665775</td><td> N/A</td><td> N/A</td><td> 4545</td><td> 4560</td><td> TGGGATGGACTGGTTC</td><td> 35</td><td> 38</td>
<td> 665893</td><td> 1228</td><td> 1243</td><td> 10461</td><td> 10476</td><td> GCACTGACACAGGCGG</td><td> 70</td><td> 39</td>
<td> 728374</td><td> N/A</td><td> N/A</td><td> 402</td><td> 417</td><td> CCGCCAACCTGCCGGG</td><td> 3</td><td> 40</td>
<td> 728375</td><td> N/A</td><td> N/A</td><td> 404</td><td> 419</td><td> GTCCGCCAACCTGCCG</td><td> 0</td><td> 41</td>
<td> 728376</td><td> N/A</td><td> N/A</td><td> 408</td><td> 423</td><td> GCCGGTCCGCCAACCT</td><td> 12</td><td> 42</td>
<td> 728377</td><td> N/A</td><td> N/A</td><td> 410</td><td> 425</td><td> CCGCCGGTCCGCCAAC</td><td> 0</td><td> 43</td>
<td> 728378</td><td> N/A</td><td> N/A</td><td> 412</td><td> 427</td><td> TCCCGCCGGTCCGCCA</td><td> 7</td><td> 44</td>
<td> 728379</td><td> N/A</td><td> N/A</td><td> 414</td><td> 429</td><td> CCTCCCGCCGGTCCGC</td><td> 7</td><td> 45</td>
<td> 728380</td><td> N/A</td><td> N/A</td><td> 416</td><td> 431</td><td> CGCCTCCCGCCGGTCC</td><td> 18</td><td> 46</td>
<td> 728381</td><td> N/A</td><td> N/A</td><td> 418</td><td> 433</td><td> TGCGCCTCCCGCCGGT</td><td> 9</td><td> 47</td>
<td> 728382</td><td> N/A</td><td> N/A</td><td> 430</td><td> 445</td><td> CTCTGCCCAGGCTGCG</td><td> 17</td><td> 48</td>
<td> 728383</td><td> N/A</td><td> N/A</td><td> 440</td><td> 455</td><td> CCAAGCTGAGCTCTGC</td><td> 29</td><td> 49</td>
<td> 728384</td><td> N/A</td><td> N/A</td><td> 442</td><td> 457</td><td> GACCAAGCTGAGCTCT</td><td> 22</td><td> 50</td>
<td> 728385</td><td> N/A</td><td> N/A</td><td> 445</td><td> 460</td><td> CGGGACCAAGCTGAGC</td><td> 17</td><td> 51</td>
<td> 728386</td><td> N/A</td><td> N/A</td><td> 447</td><td> 462</td><td> GGCGGGACCAAGCTGA</td><td> 0</td><td> 52</td>
<td> 728387</td><td> N/A</td><td> N/A</td><td> 450</td><td> 465</td><td> GGCGGCGGGACCAAGC</td><td> 6</td><td> 53</td>
<td> 728388</td><td> N/A</td><td> N/A</td><td> 459</td><td> 474</td><td> CACCGGCCGGGCGGCG</td><td> 0</td><td> 54</td>
<td> 728389</td><td> N/A</td><td> N/A</td><td> 461</td><td> 476</td><td> AGCACCGGCCGGGCGG</td><td> 0</td><td> 55</td>
<td> 728390</td><td> N/A</td><td> N/A</td><td> 463</td><td> 478</td><td> GGAGCACCGGCCGGGC</td><td> 9</td><td> 56</td>
<td> 728391</td><td> N/A</td><td> N/A</td><td> 466</td><td> 481</td><td> CAGGGAGCACCGGCCG</td><td> 15</td><td> 57</td>
<td> 728392</td><td> N/A</td><td> N/A</td><td> 468</td><td> 483</td><td> GCCAGGGAGCACCGGC</td><td> 0</td><td> 58</td>
<td> 728393</td><td> N/A</td><td> N/A</td><td> 470</td><td> 485</td><td> GCGCCAGGGAGCACCG</td><td> 4</td><td> 59</td>
<td> 728394</td><td> N/A</td><td> N/A</td><td> 472</td><td> 487</td><td> CTGCGCCAGGGAGCAC</td><td> 4</td><td> 60</td>
<td> 728395</td><td> N/A</td><td> N/A</td><td> 474</td><td> 489</td><td> GGCTGCGCCAGGGAGC</td><td> N.D.</td><td> 61</td>
<td> 728396</td><td> N/A</td><td> N/A</td><td> 476</td><td> 491</td><td> GTGGCTGCGCCAGGGA</td><td> 8</td><td> 62</td>
<td> 728397</td><td> N/A</td><td> N/A</td><td> 492</td><td> 507</td><td> TCTGCGGTGCGCCTGC</td><td> 25</td><td> 63</td>
<td> 728398</td><td> N/A</td><td> N/A</td><td> 494</td><td> 509</td><td> TGTCTGCGGTGCGCCT</td><td> 31</td><td> 64</td>
<td> 728401</td><td> 210</td><td> 225</td><td> 4535</td><td> 4550</td><td> TGGTTCATGGCAGAGG</td><td> 50</td><td> 65</td>
<td> 728402</td><td> 211</td><td> 226</td><td> 4536</td><td> 4551</td><td> CTGGTTCATGGCAGAG</td><td> 44</td><td> 66</td>
<td> 728403</td><td> 213</td><td> 228</td><td> 4538</td><td> 4553</td><td> GACTGGTTCATGGCAG</td><td> 25</td><td> 67</td>
<td> 728404</td><td> 214</td><td> 229</td><td> 4539</td><td> 4554</td><td> GGACTGGTTCATGGCA</td><td> 32</td><td> 68</td>
<td> 728405</td><td> 216</td><td> 231</td><td> 4541</td><td> 4556</td><td> ATGGACTGGTTCATGG</td><td> 49</td><td> 69</td>
<td> 728406</td><td> 217</td><td> 232</td><td> 4542</td><td> 4557</td><td> GATGGACTGGTTCATG</td><td> 42</td><td> 70</td>
<td> 728407</td><td> 218</td><td> 233</td><td> 4543</td><td> 4558</td><td> GGATGGACTGGTTCAT</td><td> 47</td><td> 71</td>
<td> 728408</td><td> 219</td><td> 234</td><td> 4544</td><td> 4559</td><td> GGGATGGACTGGTTCA</td><td> 53</td><td> 72</td>
<td> 728409</td><td> 223</td><td> 238</td><td> 4548</td><td> 4563</td><td> CACTGGGATGGACTGG</td><td> 40</td><td> 73</td>
<td> 728410</td><td> 225</td><td> 240</td><td> 4550</td><td> 4565</td><td> GCCACTGGGATGGACT</td><td> 16</td><td> 74</td>
<td> 728411</td><td> 227</td><td> 242</td><td> 4552</td><td> 4567</td><td> GAGCCACTGGGATGGA</td><td> 40</td><td> 75</td>
<td> 728412</td><td> 253</td><td> 268</td><td> 4578</td><td> 4593</td><td> CAGCCGCACGCGGCGG</td><td> 6</td><td> 76</td>
<td> 728413</td><td> 255</td><td> 270</td><td> 4580</td><td> 4595</td><td> TTCAGCCGCACGCGGC</td><td> 44</td><td> 77</td>
<td> 728414</td><td> 257</td><td> 272</td><td> 4582</td><td> 4597</td><td> GCTTCAGCCGCACGCG</td><td> 27</td><td> 78</td>
<td> 728415</td><td> 259</td><td> 274</td><td> 4584</td><td> 4599</td><td> GGGCTTCAGCCGCACG</td><td> 8</td><td> 79</td>
<td> 728416</td><td> 284</td><td> 299</td><td> 4609</td><td> 4624</td><td> AGCTGTTCACCTGGGC</td><td> 5</td><td> 80</td>
<td> 728417</td><td> 286</td><td> 301</td><td> 4611</td><td> 4626</td><td> GCAGCTGTTCACCTGG</td><td> 3</td><td> 81</td>
<td> 728418</td><td> 288</td><td> 303</td><td> 4613</td><td> 4628</td><td> TGGCAGCTGTTCACCT</td><td> 0</td><td> 82</td>
<td> 728419</td><td> 290</td><td> 305</td><td> 4615</td><td> 4630</td><td> ACTGGCAGCTGTTCAC</td><td> 5</td><td> 83</td>
<td> 728420</td><td> 292</td><td> 307</td><td> 4617</td><td> 4632</td><td> GTACTGGCAGCTGTTC</td><td> 0</td><td> 84</td>
<td> 728421</td><td> 294</td><td> 309</td><td> 4619</td><td> 4634</td><td> GGGTACTGGCAGCTGT</td><td> 9</td><td> 85</td>
<td> 728422</td><td> 296</td><td> 311</td><td> 4621</td><td> 4636</td><td> CTGGGTACTGGCAGCT</td><td> 0</td><td> 86</td>
<td> 728423</td><td> 298</td><td> 313</td><td> 4623</td><td> 4638</td><td> CCCTGGGTACTGGCAG</td><td> 24</td><td> 87</td>
<td> 728424</td><td> 300</td><td> 315</td><td> 4625</td><td> 4640</td><td> AGCCCTGGGTACTGGC</td><td> 0</td><td> 88</td>
<td> 728425</td><td> 302</td><td> 317</td><td> 4627</td><td> 4642</td><td> GAAGCCCTGGGTACTG</td><td> 0</td><td> 89</td>
<td> 728426</td><td> 304</td><td> 319</td><td> 4629</td><td> 4644</td><td> TTGAAGCCCTGGGTAC</td><td> 11</td><td> 90</td>
<td> 728427</td><td> 306</td><td> 321</td><td> 4631</td><td> 4646</td><td> CATTGAAGCCCTGGGT</td><td> 13</td><td> 91</td>
<td> 728428</td><td> 308</td><td> 323</td><td> 4633</td><td> 4648</td><td> CCCATTGAAGCCCTGG</td><td> 15</td><td> 92</td>
<td> 728429</td><td> 310</td><td> 325</td><td> 4635</td><td> 4650</td><td> GACCCATTGAAGCCCT</td><td> 14</td><td> 93</td>
<td> 728430</td><td> 312</td><td> 327</td><td> 4637</td><td> 4652</td><td> TTGACCCATTGAAGCC</td><td> 11</td><td> 94</td>
<td> 728431</td><td> 314</td><td> 329</td><td> 4639</td><td> 4654</td><td> CGTTGACCCATTGAAG</td><td> 0</td><td> 95</td>
<td> 728432</td><td> 316</td><td> 331</td><td> 4641</td><td> 4656</td><td> CCCGTTGACCCATTGA</td><td> 25</td><td> 96</td>
<td> 728433</td><td> 318</td><td> 333</td><td> 4643</td><td> 4658</td><td> TCCCCGTTGACCCATT</td><td> 6</td><td> 97</td>
<td> 728434</td><td> 320</td><td> 335</td><td> 4645</td><td> 4660</td><td> TTTCCCCGTTGACCCA</td><td> 20</td><td> 98</td>
<td> 728435</td><td> 322</td><td> 337</td><td> 4647</td><td> 4662</td><td> CTTTTCCCCGTTGACC</td><td> 12</td><td> 99</td>
<td> 728436</td><td> 324</td><td> 339</td><td> 4649</td><td> 4664</td><td> TTCTTTTCCCCGTTGA</td><td> 13</td><td> 100</td>
<td> 728437</td><td> 326</td><td> 341</td><td> 4651</td><td> 4666</td><td> ATTTCTTTTCCCCGTT</td><td> 7</td><td> 101</td>
<td> 728438</td><td> 328</td><td> 343</td><td> 4653</td><td> 4668</td><td> TAATTTCTTTTCCCCG</td><td> 19</td><td> 102</td>
<td> 728439</td><td> 356</td><td> 371</td><td> 4681</td><td> 4696</td><td> TTGTGGCATGCCTCCA</td><td> 25</td><td> 103</td>
<td> 728440</td><td> 358</td><td> 373</td><td> 4683</td><td> 4698</td><td> CCTTGTGGCATGCCTC</td><td> 31</td><td> 104</td>
<td> 728441</td><td> 360</td><td> 375</td><td> 4685</td><td> 4700</td><td> TGCCTTGTGGCATGCC</td><td> 7</td><td> 105</td>
<td> 728442</td><td> 362</td><td> 377</td><td> 4687</td><td> 4702</td><td> CATGCCTTGTGGCATG</td><td> 5</td><td> 106</td>
<td> 728443</td><td> 364</td><td> 379</td><td> 4689</td><td> 4704</td><td> ACCATGCCTTGTGGCA</td><td> 5</td><td> 107</td>
<td> 728444</td><td> 366</td><td> 381</td><td> 4691</td><td> 4706</td><td> GGACCATGCCTTGTGG</td><td> 6</td><td> 108</td>
<td> 728445</td><td> 368</td><td> 383</td><td> 4693</td><td> 4708</td><td> TGGGACCATGCCTTGT</td><td> 10</td><td> 109</td>
<td> 728446</td><td> 371</td><td> 386</td><td> 4696</td><td> 4711</td><td> GGCTGGGACCATGCCT</td><td> 0</td><td> 110</td>
<td> 728447</td><td> 377</td><td> 392</td><td> 4702</td><td> 4717</td><td> CGTCCTGGCTGGGACC</td><td> 2</td><td> 111</td>
<td> 728448</td><td> 380</td><td> 395</td><td> 4705</td><td> 4720</td><td> CTCCGTCCTGGCTGGG</td><td> 18</td><td> 112</td>
Table 2
Inhibition of IRF5 RNA by 3-10-3 cEt gapmers targeting SEQ ID NO: 1 and 2
<td> Compound Number</td><td> SEQ ID NO: 1 Start Site</td><td> SEQ ID NO: 1 Stop Site</td><td> SEQ ID NO: 2 Start Site</td><td> SEQ ID NO: 2 Stop Site</td><td> Sequence (5' to 3')</td><td> IRF5 (% Inhibition)</td><td> SEQ ID NO</td>
<td> 665795</td><td> 385</td><td> 400</td><td> 4710</td><td> 4725</td><td> GTTATCTCCGTCCTGG</td><td> 58</td><td> 113</td>
<td> 665893</td><td> 1228</td><td> 1243</td><td> 10461</td><td> 10476</td><td> GCACTGACACAGGCGG</td><td> 75</td><td> 39</td>
<td> 728449</td><td> 381</td><td> 396</td><td> 4706</td><td> 4721</td><td> TCTCCGTCCTGGCTGG</td><td> 2</td><td> 114</td>
<td> 728450</td><td> 382</td><td> 397</td><td> 4707</td><td> 4722</td><td> ATCTCCGTCCTGGCTG</td><td> 3</td><td> 115</td>
<td> 728451</td><td> 383</td><td> 398</td><td> 4708</td><td> 4723</td><td> TATCTCCGTCCTGGCT</td><td> 0</td><td> 116</td>
<td> 728452</td><td> 384</td><td> 399</td><td> 4709</td><td> 4724</td><td> TTATCTCCGTCCTGGC</td><td> 11</td><td> 117</td>
<td> 728453</td><td> 386</td><td> 401</td><td> 4711</td><td> 4726</td><td> TGTTATCTCCGTCCTG</td><td> 14</td><td> 118</td>
<td> 728454</td><td> 387</td><td> 402</td><td> 4712</td><td> 4727</td><td> GTGTTATCTCCGTCCT</td><td> 27</td><td> 119</td>
<td> 728455</td><td> 388</td><td> 403</td><td> 4713</td><td> 4728</td><td> GGTGTTATCTCCGTCC</td><td> 18</td><td> 120</td>
<td> 728456</td><td> 389</td><td> 404</td><td> 4714</td><td> 4729</td><td> TGGTGTTATCTCCGTC</td><td> 31</td><td> 121</td>
<td> 728457</td><td> 390</td><td> 405</td><td> 4715</td><td> 4730</td><td> ATGGTGTTATCTCCGT</td><td> 17</td><td> 122</td>
<td> 728458</td><td> 392</td><td> 407</td><td> 4717</td><td> 4732</td><td> AGATGGTGTTATCTCC</td><td> 50</td><td> 123</td>
<td> 728459</td><td> 394</td><td> 409</td><td> 4719</td><td> 4734</td><td> GAAGATGGTGTTATCT</td><td> 14</td><td> 124</td>
<td> 728460</td><td> 396</td><td> 411</td><td> 4721</td><td> 4736</td><td> TTGAAGATGGTGTTAT</td><td> 15</td><td> 125</td>
<td> 728461</td><td> 398</td><td> 413</td><td> 4723</td><td> 4738</td><td> CCTTGAAGATGGTGTT</td><td> 29</td><td> 126</td>
<td> 728462</td><td> 400</td><td> 415</td><td> N/A</td><td> N/A</td><td> GGCCTTGAAGATGGTG</td><td> 4</td><td> 127</td>
<td> 728492</td><td> 490</td><td> 505</td><td> 8383</td><td> 8398</td><td> CTTGTTAAGGGCACAG</td><td> 26</td><td> 128</td>
<td> 728493</td><td> 491</td><td> 506</td><td> 8384</td><td> 8399</td><td> TCTTGTTAAGGGCACA</td><td> 30</td><td> 129</td>
<td> 728494</td><td> 492</td><td> 507</td><td> 8385</td><td> 8400</td><td> CTCTTGTTAAGGGCAC</td><td> 45</td><td> 130</td>
<td> 728495</td><td> 494</td><td> 509</td><td> 8387</td><td> 8402</td><td> GGCTCTTGTTAAGGGC</td><td> 17</td><td> 131</td>
<td> 728496</td><td> 496</td><td> 511</td><td> 8389</td><td> 8404</td><td> CCGGCTCTTGTTAAGG</td><td> 5</td><td> 132</td>
<td> 728497</td><td> 498</td><td> 513</td><td> 8391</td><td> 8406</td><td> TCCCGGCTCTTGTTAA</td><td> 14</td><td> 133</td>
<td> 728498</td><td> 500</td><td> 515</td><td> 8393</td><td> 8408</td><td> AGTCCCGGCTCTTGTT</td><td> 57</td><td> 134</td>
<td> 728499</td><td> 502</td><td> 517</td><td> 8395</td><td> 8410</td><td> GAAGTCCCGGCTCTTG</td><td> 45</td><td> 135</td>
<td> 728500</td><td> 504</td><td> 519</td><td> 8397</td><td> 8412</td><td> CGGAAGTCCCGGCTCT</td><td> 43</td><td> 136</td>
<td> 728501</td><td> 506</td><td> 521</td><td> 8399</td><td> 8414</td><td> GGCGGAAGTCCCGGCT</td><td> 13</td><td> 137</td>
<td> 728502</td><td> 508</td><td> 523</td><td> 8401</td><td> 8416</td><td> GAGGCGGAAGTCCCGG</td><td> 35</td><td> 138</td>
<td> 728503</td><td> 510</td><td> 525</td><td> 8403</td><td> 8418</td><td> ATGAGGCGGAAGTCCC</td><td> 23</td><td> 139</td>
<td> 728504</td><td> 512</td><td> 527</td><td> 8405</td><td> 8420</td><td> AGATGAGGCGGAAGTC</td><td> 21</td><td> 140</td>
<td> 728505</td><td> 514</td><td> 529</td><td> 8407</td><td> 8422</td><td> GTAGATGAGGCGGAAG</td><td> 29</td><td> 141</td>
<td> 728506</td><td> 538</td><td> 553</td><td> 8431</td><td> 8446</td><td> AGGTGGCATGTCCCGG</td><td> 41</td><td> 142</td>
<td> 728507</td><td> 540</td><td> 555</td><td> 8433</td><td> 8448</td><td> TGAGGTGGCATGTCCC</td><td> 40</td><td> 143</td>
<td> 728508</td><td> 542</td><td> 557</td><td> 8435</td><td> 8450</td><td> GCTGAGGTGGCATGTC</td><td> 33</td><td> 144</td>
<td> 728509</td><td> 544</td><td> 559</td><td> 8437</td><td> 8452</td><td> GGGCTGAGGTGGCATG</td><td> 44</td><td> 145</td>
<td> 728510</td><td> 546</td><td> 561</td><td> 8439</td><td> 8454</td><td> TAGGGCTGAGGTGGCA</td><td> 41</td><td> 146</td>
<td> 728511</td><td> 552</td><td> 567</td><td> 8445</td><td> 8460</td><td> ATCTTGTAGGGCTGAG</td><td> 29</td><td> 147</td>
<td> 728512</td><td> 554</td><td> 569</td><td> 8447</td><td> 8462</td><td> AGATCTTGTAGGGCTG</td><td> 45</td><td> 148</td>
<td> 728513</td><td> 556</td><td> 571</td><td> 8449</td><td> 8464</td><td> GTAGATCTTGTAGGGC</td><td> 36</td><td> 149</td>
<td> 728514</td><td> 572</td><td> 587</td><td> 8465</td><td> 8480</td><td> CATTGGAGCAGACCTC</td><td> 0</td><td> 150</td>
<td> 728515</td><td> 574</td><td> 589</td><td> 8467</td><td> 8482</td><td> GCCATTGGAGCAGACC</td><td> 13</td><td> 151</td>
<td> 728516</td><td> 576</td><td> 591</td><td> 8469</td><td> 8484</td><td> GGGCCATTGGAGCAGA</td><td> 15</td><td> 152</td>
<td> 728517</td><td> 578</td><td> 593</td><td> 8471</td><td> 8486</td><td> CAGGGCCATTGGAGCA</td><td> 15</td><td> 153</td>
<td> 728518</td><td> 580</td><td> 595</td><td> 8473</td><td> 8488</td><td> AGCAGGGCCATTGGAG</td><td> 13</td><td> 154</td>
<td> 728519</td><td> 582</td><td> 597</td><td> 8475</td><td> 8490</td><td> GGAGCAGGGCCATTGG</td><td> 24</td><td> 155</td>
<td> 728520</td><td> 591</td><td> 606</td><td> N/A</td><td> N/A</td><td> GAGTCTGTGGGAGCAG</td><td> 35</td><td> 156</td>
<td> 728521</td><td> 614</td><td> 629</td><td> 8973</td><td> 8988</td><td> AAGAGTAATCCTCAGG</td><td> 22</td><td> 157</td>
<td> 728522</td><td> 616</td><td> 631</td><td> 8975</td><td> 8990</td><td> AAAAGAGTAATCCTCA</td><td> 0</td><td> 158</td>
<td> 728523</td><td> 618</td><td> 633</td><td> 8977</td><td> 8992</td><td> CCAAAAGAGTAATCCT</td><td> 6</td><td> 159</td>
<td> 728524</td><td> 620</td><td> 635</td><td> 8979</td><td> 8994</td><td> CACCAAAAGAGTAATC</td><td> 1</td><td> 160</td>
Table 3
Inhibition of IRF5 RNA by 3-10-3 cEt gapmers targeting SEQ ID NO: 1 and 2
<td> Compound Number</td><td> SEQ ID NO: 1 Start Site</td><td> SEQ ID NO: 1 Stop Site</td><td> SEQ ID NO: 2 Start Site</td><td> SEQ ID NO: 2 Stop Site</td><td> Sequence (5' to 3')</td><td> IRF5 (% Inhibition)</td><td> SEQ ID NO</td>
<td> 665893</td><td> 1228</td><td> 1243</td><td> 10461</td><td> 10476</td><td> GCACTGACACAGGCGG</td><td> 75</td><td> 39</td>
<td> 665985</td><td> 1981</td><td> 1996</td><td> 11546</td><td> 11561</td><td> CTCCTATACAGCTAGG</td><td> 49</td><td> 161</td>
<td> 665987</td><td> 1993</td><td> 2008</td><td> 11558</td><td> 11573</td><td> CTTAGGCAATTCCTCC</td><td> 50</td><td> 162</td>
<td> 666005</td><td> 2159</td><td> 2174</td><td> 11724</td><td> 11739</td><td> CTAAGTGCTCACTCAT</td><td> 64</td><td> 163</td>
<td> 666007</td><td> 2183</td><td> 2198</td><td> 11748</td><td> 11763</td><td> AGCCTTGAGCATCTGA</td><td> 63</td><td> 164</td>
<td> 666009</td><td> 2186</td><td> 2201</td><td> 11751</td><td> 11766</td><td> GCCAGCCTTGAGCATC</td><td> 50</td><td> 165</td>
<td> 728956</td><td> 1977</td><td> 1992</td><td> 11542</td><td> 11557</td><td> TATACAGCTAGGCCCC</td><td> 32</td><td> 166</td>
<td> 728957</td><td> 1978</td><td> 1993</td><td> 11543</td><td> 11558</td><td> CTATACAGCTAGGCCC</td><td> 43</td><td> 167</td>
<td> 728958</td><td> 1979</td><td> 1994</td><td> 11544</td><td> 11559</td><td> CCTATACAGCTAGGCC</td><td> 68</td><td> 168</td>
<td> 728959</td><td> 1980</td><td> 1995</td><td> 11545</td><td> 11560</td><td> TCCTATACAGCTAGGC</td><td> 39</td><td> 169</td>
<td> 728960</td><td> 1982</td><td> 1997</td><td> 11547</td><td> 11562</td><td> CCTCCTATACAGCTAG</td><td> 48</td><td> 170</td>
<td> 728961</td><td> 1983</td><td> 1998</td><td> 11548</td><td> 11563</td><td> TCCTCCTATACAGCTA</td><td> 46</td><td> 171</td>
<td> 728962</td><td> 1984</td><td> 1999</td><td> 11549</td><td> 11564</td><td> TTCCTCCTATACAGCT</td><td> 60</td><td> 172</td>
<td> 728963</td><td> 1985</td><td> 2000</td><td> 11550</td><td> 11565</td><td> ATTCCTCCTATACAGC</td><td> 35</td><td> 173</td>
<td> 728964</td><td> 1986</td><td> 2001</td><td> 11551</td><td> 11566</td><td> AATTCCTCCTATACAG</td><td> 28</td><td> 174</td>
<td> 728965</td><td> 1988</td><td> 2003</td><td> 11553</td><td> 11568</td><td> GCAATTCCTCCTATAC</td><td> 61</td><td> 175</td>
<td> 728966</td><td> 1989</td><td> 2004</td><td> 11554</td><td> 11569</td><td> GGCAATTCCTCCTATA</td><td> 60</td><td> 176</td>
<td> 728967</td><td> 1992</td><td> 2007</td><td> 11557</td><td> 11572</td><td> TTAGGCAATTCCTCCT</td><td> 51</td><td> 177</td>
<td> 728968</td><td> 1994</td><td> 2009</td><td> 11559</td><td> 11574</td><td> CCTTAGGCAATTCCTC</td><td> 64</td><td> 178</td>
<td> 728969</td><td> 1995</td><td> 2010</td><td> 11560</td><td> 11575</td><td> CCCTTAGGCAATTCCT</td><td> 68</td><td> 179</td>
<td> 728970</td><td> 1996</td><td> 2011</td><td> 11561</td><td> 11576</td><td> ACCCTTAGGCAATTCC</td><td> 77</td><td> 180</td>
<td> 728971</td><td> 1998</td><td> 2013</td><td> 11563</td><td> 11578</td><td> CCACCCTTAGGCAATT</td><td> 46</td><td> 181</td>
<td> 728972</td><td> 2000</td><td> 2015</td><td> 11565</td><td> 11580</td><td> GGCCACCCTTAGGCAA</td><td> 62</td><td> 182</td>
<td> 728973</td><td> 2003</td><td> 2018</td><td> 11568</td><td> 11583</td><td> GTGGGCCACCCTTAGG</td><td> 58</td><td> 183</td>
<td> 728974</td><td> 2006</td><td> 2021</td><td> 11571</td><td> 11586</td><td> AGAGTGGGCCACCCTT</td><td> 33</td><td> 184</td>
<td> 728975</td><td> 2008</td><td> 2023</td><td> 11573</td><td> 11588</td><td> CAAGAGTGGGCCACCC</td><td> 45</td><td> 185</td>
<td> 728976</td><td> 2010</td><td> 2025</td><td> 11575</td><td> 11590</td><td> CACAAGAGTGGGCCAC</td><td> 37</td><td> 186</td>
<td> 728977</td><td> 2012</td><td> 2027</td><td> 11577</td><td> 11592</td><td> ATCACAAGAGTGGGCC</td><td> 52</td><td> 187</td>
<td> 728978</td><td> 2014</td><td> 2029</td><td> 11579</td><td> 11594</td><td> CAATCACAAGAGTGGG</td><td> 59</td><td> 188</td>
<td> 728979</td><td> 2016</td><td> 2031</td><td> 11581</td><td> 11596</td><td> GGCAATCACAAGAGTG</td><td> 47</td><td> 189</td>
<td> 728980</td><td> 2033</td><td> 2048</td><td> 11598</td><td> 11613</td><td> GTTGCCAGAGGAAATG</td><td> 13</td><td> 190</td>
<td> 728981</td><td> 2035</td><td> 2050</td><td> 11600</td><td> 11615</td><td> TTGTTGCCAGAGGAAA</td><td> 15</td><td> 191</td>
<td> 728982</td><td> 2037</td><td> 2052</td><td> 11602</td><td> 11617</td><td> TTTTGTTGCCAGAGGA</td><td> 19</td><td> 192</td>
<td> 728983</td><td> 2040</td><td> 2055</td><td> 11605</td><td> 11620</td><td> GGCTTTTGTTGCCAGA</td><td> 17</td><td> 193</td>
<td> 728984</td><td> 2047</td><td> 2062</td><td> 11612</td><td> 11627</td><td> ACACTCTGGCTTTTGT</td><td> 11</td><td> 194</td>
<td> 728985</td><td> 2049</td><td> 2064</td><td> 11614</td><td> 11629</td><td> CAACACTCTGGCTTTT</td><td> 0</td><td> 195</td>
<td> 728986</td><td> 2051</td><td> 2066</td><td> 11616</td><td> 11631</td><td> CACAACACTCTGGCTT</td><td> 44</td><td> 196</td>
<td> 728987</td><td> 2059</td><td> 2074</td><td> 11624</td><td> 11639</td><td> ACTTGGCCCACAACAC</td><td> 9</td><td> 197</td>
<td> 728988</td><td> 2061</td><td> 2076</td><td> 11626</td><td> 11641</td><td> GGACTTGGCCCACAAC</td><td> 29</td><td> 198</td>
<td> 728989</td><td> 2086</td><td> 2101</td><td> 11651</td><td> 11666</td><td> CATGCCCTGCAGAGGC</td><td> 44</td><td> 199</td>
<td> 728990</td><td> 2095</td><td> 2110</td><td> 11660</td><td> 11675</td><td> AATCAGGGCCATGCCC</td><td> 0</td><td> 200</td>
<td> 728991</td><td> 2097</td><td> 2112</td><td> 11662</td><td> 11677</td><td> GAAATCAGGGCCATGC</td><td> 9</td><td> 201</td>
<td> 728992</td><td> 2106</td><td> 2121</td><td> 11671</td><td> 11686</td><td> CAAACCAGGGAAATCA</td><td> 26</td><td> 202</td>
<td> 728993</td><td> 2108</td><td> 2123</td><td> 11673</td><td> 11688</td><td> CTCAAACCAGGGAAAT</td><td> 51</td><td> 203</td>
<td> 728994</td><td> 2110</td><td> 2125</td><td> 11675</td><td> 11690</td><td> GTCTCAAACCAGGGAA</td><td> 63</td><td> 204</td>
<td> 728995</td><td> 2112</td><td> 2127</td><td> 11677</td><td> 11692</td><td> GAGTCTCAAACCAGGG</td><td> 61</td><td> 205</td>
<td> 728996</td><td> 2114</td><td> 2129</td><td> 11679</td><td> 11694</td><td> GTGAGTCTCAAACCAG</td><td> 71</td><td> 206</td>
<td> 728997</td><td> 2117</td><td> 2132</td><td> 11682</td><td> 11697</td><td> GAAGTGAGTCTCAAAC</td><td> 58</td><td> 207</td>
<td> 728998</td><td> 2119</td><td> 2134</td><td> 11684</td><td> 11699</td><td> AGGAAGTGAGTCTCAA</td><td> 68</td><td> 208</td>
<td> 728999</td><td> 2121</td><td> 2136</td><td> 11686</td><td> 11701</td><td> TGAGGAAGTGAGTCTC</td><td> 20</td><td> 209</td>
<td> 729000</td><td> 2141</td><td> 2156</td><td> 11706</td><td> 11721</td><td> TATCTCAGAGGACAGG</td><td> 63</td><td> 210</td>
<td> 729001</td><td> 2143</td><td> 2158</td><td> 11708</td><td> 11723</td><td> ATTATCTCAGAGGACA</td><td> 67</td><td> 211</td>
<td> 729002</td><td> 2145</td><td> 2160</td><td> 11710</td><td> 11725</td><td> ATATTATCTCAGAGGA</td><td> 61</td><td> 212</td>
<td> 729003</td><td> 2148</td><td> 2163</td><td> 11713</td><td> 11728</td><td> CTCATATTATCTCAGA</td><td> 64</td><td> 213</td>
<td> 729004</td><td> 2152</td><td> 2167</td><td> 11717</td><td> 11732</td><td> CTCACTCATATTATCT</td><td> 50</td><td> 214</td>
<td> 729005</td><td> 2154</td><td> 2169</td><td> 11719</td><td> 11734</td><td> TGCTCACTCATATTAT</td><td> 20</td><td> 215</td>
<td> 729006</td><td> 2155</td><td> 2170</td><td> 11720</td><td> 11735</td><td> GTGCTCACTCATATTA</td><td> 53</td><td> 216</td>
<td> 729007</td><td> 2156</td><td> 2171</td><td> 11721</td><td> 11736</td><td> AGTGCTCACTCATATT</td><td> 38</td><td> 217</td>
<td> 729008</td><td> 2157</td><td> 2172</td><td> 11722</td><td> 11737</td><td> AAGTGCTCACTCATAT</td><td> 44</td><td> 218</td>
<td> 729009</td><td> 2158</td><td> 2173</td><td> 11723</td><td> 11738</td><td> TAAGTGCTCACTCATA</td><td> 45</td><td> 219</td>
<td> 729010</td><td> 2160</td><td> 2175</td><td> 11725</td><td> 11740</td><td> CCTAAGTGCTCACTCA</td><td> 63</td><td> 220</td>
<td> 729011</td><td> 2161</td><td> 2176</td><td> 11726</td><td> 11741</td><td> ACCTAAGTGCTCACTC</td><td> 64</td><td> 221</td>
<td> 729012</td><td> 2162</td><td> 2177</td><td> 11727</td><td> 11742</td><td> TACCTAAGTGCTCACT</td><td> 34</td><td> 222</td>
<td> 729013</td><td> 2163</td><td> 2178</td><td> 11728</td><td> 11743</td><td> ATACCTAAGTGCTCAC</td><td> 56</td><td> 223</td>
<td> 729014</td><td> 2164</td><td> 2179</td><td> 11729</td><td> 11744</td><td> GATACCTAAGTGCTCA</td><td> 60</td><td> 224</td>
<td> 729015</td><td> 2166</td><td> 2181</td><td> 11731</td><td> 11746</td><td> ATGATACCTAAGTGCT</td><td> 57</td><td> 225</td>
<td> 729016</td><td> 2168</td><td> 2183</td><td> 11733</td><td> 11748</td><td> ATATGATACCTAAGTG</td><td> 53</td><td> 226</td>
<td> 729017</td><td> 2170</td><td> 2185</td><td> 11735</td><td> 11750</td><td> TGATATGATACCTAAG</td><td> 46</td><td> 227</td>
<td> 729018</td><td> 2172</td><td> 21X7</td><td> Η 737</td><td> iiiii</td><td> TCTGATATGATACCTA</td><td> H</td><td> m</td>
<td> 729019</td><td> 2174</td><td> 2189</td><td> 11739</td><td> 11754</td><td> CATCTGATATGATACC</td><td> 63</td><td> 229</td>
<td> 729020</td><td> 2176</td><td> 2191</td><td> 11741</td><td> 11756</td><td> AGCATCTGATATGATA</td><td> 65</td><td> 230</td>
<td> 729021</td><td> 2178</td><td> 2193</td><td> 11743</td><td> 11758</td><td> TGAGCATCTGATATGA</td><td> 60</td><td> 231</td>
<td> 729022</td><td> 2179</td><td> 2194</td><td> 11744</td><td> 11759</td><td> TTGAGCATCTGATATG</td><td> 37</td><td> 232</td>
<td> 729023</td><td> 2180</td><td> 2195</td><td> 11745</td><td> 11760</td><td> CTTGAGCATCTGATAT</td><td> 36</td><td> 233</td>
<td> 729024</td><td> 2181</td><td> 2196</td><td> 11746</td><td> 11761</td><td> CCTTGAGCATCTGATA</td><td> 56</td><td> 234</td>
<td> 729025</td><td> 2182</td><td> 2197</td><td> 11747</td><td> 11762</td><td> GCCTTGAGCATCTGAT</td><td> 54</td><td> 235</td>
<td> 729026</td><td> 2185</td><td> 2200</td><td> 11750</td><td> 11765</td><td> CCAGCCTTGAGCATCT</td><td> 51</td><td> 236</td>
<td> 729027</td><td> 2187</td><td> 2202</td><td> 11752</td><td> 11767</td><td> TGCCAGCCTTGAGCAT</td><td> 14</td><td> 237</td>
Table 4
Inhibition of IRF5 RNA by 3-10-3 cEt gapmers targeting SEQ ID NO: 1 and 2
<td> Compound Number</td><td> SEQ ID NO: 1 Start Site</td><td> SEQ ID NO: 1 Stop Site</td><td> SEQ ID NO: 2 Start Site</td><td> SEQ ID NO: 2 Stop Site</td><td> Sequence (5' to 3')</td><td> IRF5 (% Inhibition)</td><td> SEQ ID NO</td>
<td> 665830</td><td> 680</td><td> 695</td><td> 9499</td><td> 9514</td><td> TGAGGCTCAGGCTTGG</td><td> 65</td><td> 238</td>
<td rowspan="2"> 665840</td><td> 715</td><td> 730</td><td> 9755</td><td> 9770</td><td rowspan="2"> CGGCTGCAGAGTGGGC</td><td rowspan="2"> 43</td><td rowspan="2"> 239</td>
<td> 760</td><td> 775</td><td> 9800</td><td> 9815</td>
<td rowspan="2"> 665842</td><td> 717</td><td> 732</td><td> 9757</td><td> 9772</td><td rowspan="2"> GGCGGCTGCAGAGTGG</td><td rowspan="2"> 43</td><td rowspan="2"> 240</td>
<td> 762</td><td> 777</td><td> 9802</td><td> 9817</td>
<td rowspan="2"> 665843</td><td> 718</td><td> 733</td><td> 9758</td><td> 9773</td><td rowspan="2"> GGGCGGCTGCAGAGTG</td><td rowspan="2"> 53</td><td rowspan="2"> 241</td>
<td> 763</td><td> 778</td><td> 9803</td><td> 9818</td>
<td rowspan="2"> 665845</td><td> 720</td><td> 735</td><td> 9760</td><td> 9775</td><td rowspan="2"> GTGGGCGGCTGCAGAG</td><td rowspan="2"> 43</td><td rowspan="2"> 242</td>
<td> 750</td><td> 765</td><td> 9790</td><td> 9805</td>
<td rowspan="2"> 665846</td><td> 721</td><td> 736</td><td> 9761</td><td> 9776</td><td rowspan="2"> AGTGGGCGGCTGCAGA</td><td rowspan="2"> 28</td><td rowspan="2"> 243</td>
<td> 751</td><td> 766</td><td> 9791</td><td> 9806</td>
<td rowspan="2"> 665847</td><td> 722</td><td> 737</td><td> 9762</td><td> 9777</td><td rowspan="2"> GAGTGGGCGGCTGCAG</td><td rowspan="2"> 24</td><td rowspan="2"> 244</td>
<td> 752</td><td> 767</td><td> 9792</td><td> 9807</td>
<td rowspan="2"> 665848</td><td> 724</td><td> 739</td><td> 9764</td><td> 9779</td><td rowspan="2"> CAGAGTGGGCGGCTGC</td><td rowspan="2"> 40</td><td rowspan="2"> 245</td>
<td> 754</td><td> 769</td><td> 9794</td><td> 9809</td>
<td rowspan="2"> 665853</td><td> 725</td><td> 740</td><td> 9765</td><td> 9780</td><td rowspan="2"> GCAGAGTGGGCGGCTG</td><td rowspan="2"> 11</td><td rowspan="2"> 246</td>
<td> 755</td><td> 770</td><td> 9795</td><td> 9810</td>
<td> 665893</td><td> 1228</td><td> 1243</td><td> 10461</td><td> 10476</td><td> GCACTGACACAGGCGG</td><td> 72</td><td> 39</td>
<td> 728525</td><td> 622</td><td> 637</td><td> 8981</td><td> 8996</td><td> TGCACCAAAAGAGTAA</td><td> 22</td><td> 247</td>
<td> 728526</td><td> 624</td><td> 639</td><td> 8983</td><td> 8998</td><td> CCTGCACCAAAAGAGT</td><td> 31</td><td> 248</td>
<td> 728527</td><td> 626</td><td> 641</td><td> 8985</td><td> 9000</td><td> CTCCTGCACCAAAAGA</td><td> 39</td><td> 249</td>
<td> 728528</td><td> 628</td><td> 643</td><td> 8987</td><td> 9002</td><td> CTCTCCTGCACCAAAA</td><td> 31</td><td> 250</td>
<td> 728529</td><td> 663</td><td> 678</td><td> 9482</td><td> 9497</td><td> AACATCCTCTGCAGCT</td><td> 29</td><td> 251</td>
<td> 728530</td><td> 666</td><td> 681</td><td> 9485</td><td> 9500</td><td> GGCAACATCCTCTGCA</td><td> 36</td><td> 252</td>
<td> 728531</td><td> 668</td><td> 683</td><td> 9487</td><td> 9502</td><td> TTGGCAACATCCTCTG</td><td> 45</td><td> 253</td>
<td> 728532</td><td> 670</td><td> 685</td><td> 9489</td><td> 9504</td><td> GCTTGGCAACATCCTC</td><td> 53</td><td> 254</td>
<td> 728533</td><td> 672</td><td> 687</td><td> 9491</td><td> 9506</td><td> AGGCTTGGCAACATCC</td><td> 66</td><td> 255</td>
<td> 728534</td><td> 675</td><td> 690</td><td> 9494</td><td> 9509</td><td> CTCAGGCTTGGCAACA</td><td> 42</td><td> 256</td>
<td> 728535</td><td> 678</td><td> 693</td><td> 9497</td><td> 9512</td><td> AGGCTCAGGCTTGGCA</td><td> 60</td><td> 257</td>
<td> 728536</td><td> 681</td><td> 696</td><td> 9500</td><td> 9515</td><td> GTGAGGCTCAGGCTTG</td><td> 44</td><td> 258</td>
<td> 728537</td><td> 682</td><td> 697</td><td> 9501</td><td> 9516</td><td> TGTGAGGCTCAGGCTT</td><td> 34</td><td> 259</td>
<td> 728538</td><td> 684</td><td> 699</td><td> N/A</td><td> N/A</td><td> TCTGTGAGGCTCAGGC</td><td> 41</td><td> 260</td>
<td> 728544</td><td> N/A</td><td> N/A</td><td> 9690</td><td> 9705</td><td> CAGACTGCACTGCATC</td><td> 29</td><td> 261</td>
<td> 728545</td><td> N/A</td><td> N/A</td><td> 9692</td><td> 9707</td><td> GCCAGACTGCACTGCA</td><td> 8</td><td> 262</td>
<td> 728546</td><td> N/A</td><td> N/A</td><td> 9694</td><td> 9709</td><td> GGGCCAGACTGCACTG</td><td> 28</td><td> 263</td>
<td> 728547</td><td> N/A</td><td> N/A</td><td> 9711</td><td> 9726</td><td> AATAGGGTGTCATGTG</td><td> 6</td><td> 264</td>
<td> 728548</td><td> N/A</td><td> N/A</td><td> 9713</td><td> 9728</td><td> AGAATAGGGTGTCATG</td><td> 0</td><td> 265</td>
<td> 728549</td><td> N/A</td><td> N/A</td><td> 9715</td><td> 9730</td><td> AAAGAATAGGGTGTCA</td><td> 17</td><td> 266</td>
<td> 728550</td><td> N/A</td><td> N/A</td><td> 9717</td><td> 9732</td><td> GTAAAGAATAGGGTGT</td><td> 14</td><td> 267</td>
<td> 728551</td><td> N/A</td><td> N/A</td><td> 9719</td><td> 9734</td><td> GAGTAAAGAATAGGGT</td><td> 24</td><td> 268</td>
<td> 728552</td><td> N/A</td><td> N/A</td><td> 9721</td><td> 9736</td><td> TTGAGTAAAGAATAGG</td><td> 12</td><td> 269</td>
<td> 728553</td><td> N/A</td><td> N/A</td><td> 9723</td><td> 9738</td><td> CTTTGAGTAAAGAATA</td><td> 8</td><td> 270</td>
<td> 728554</td><td> N/A</td><td> N/A</td><td> 9725</td><td> 9740</td><td> CTCTTTGAGTAAAGAA</td><td> 0</td><td> 271</td>
<td> 728555</td><td> N/A</td><td> N/A</td><td> 9727</td><td> 9742</td><td> TCCTCTTTGAGTAAAG</td><td> 14</td><td> 272</td>
<td> 728556</td><td> N/A</td><td> N/A</td><td> 9729</td><td> 9744</td><td> CATCCTCTTTGAGTAA</td><td> 21</td><td> 273</td>
<td> 728557</td><td> N/A</td><td> N/A</td><td> 9731</td><td> 9746</td><td> GACATCCTCTTTGAGT</td><td> 11</td><td> 274</td>
<td> 728558</td><td> N/A</td><td> N/A</td><td> 9733</td><td> 9748</td><td> TTGACATCCTCTTTGA</td><td> 32</td><td> 275</td>
<td> 728559</td><td> N/A</td><td> N/A</td><td> 9735</td><td> 9750</td><td> ACTTGACATCCTCTTT</td><td> 16</td><td> 276</td>
<td> 728560</td><td> 699</td><td> 714</td><td> 9739</td><td> 9754</td><td> GGCCACTTGACATCCT</td><td> 6</td><td> 277</td>
<td> 728561</td><td> 701</td><td> 716</td><td> 9741</td><td> 9756</td><td> GCGGCCACTTGACATC</td><td> 31</td><td> 278</td>
<td> 728562</td><td> 703</td><td> 718</td><td> 9743</td><td> 9758</td><td> GGGCGGCCACTTGACA</td><td> 13</td><td> 279</td>
<td> 728563</td><td> 705</td><td> 720</td><td> 9745</td><td> 9760</td><td> GTGGGCGGCCACTTGA</td><td> 40</td><td> 280</td>
<td> 728564</td><td> 707</td><td> 722</td><td> 9747</td><td> 9762</td><td> GAGTGGGCGGCCACTT</td><td> 12</td><td> 281</td>
<td> 728565</td><td> 709</td><td> 724</td><td> 9749</td><td> 9764</td><td> CAGAGTGGGCGGCCAC</td><td> 38</td><td> 282</td>
<td> 728566</td><td> 711</td><td> 726</td><td> 9751</td><td> 9766</td><td> TGCAGAGTGGGCGGCC</td><td> 21</td><td> 283</td>
<td> 728567</td><td> 726</td><td> 741</td><td> 9766</td><td> 9781</td><td> CGCAGAGTGGGCGGCT</td><td> 18</td><td> 284</td>
<td> 728568</td><td> 727</td><td> 742</td><td> 9767</td><td> 9782</td><td> CCGCAGAGTGGGCGGC</td><td> 17</td><td> 285</td>
<td> 728569</td><td> 731</td><td> 746</td><td> 9771</td><td> 9786</td><td> GCGGCCGCAGAGTGGG</td><td> 4</td><td> 286</td>
<td> 728570</td><td> 733</td><td> 748</td><td> 9773</td><td> 9788</td><td> AGGCGGCCGCAGAGTG</td><td> 20</td><td> 287</td>
<td> 728571</td><td> 735</td><td> 750</td><td> 9775</td><td> 9790</td><td> GTAGGCGGCCGCAGAG</td><td> 14</td><td> 288</td>
<td> 728572</td><td> 737</td><td> 752</td><td> 9777</td><td> 9792</td><td> GAGTAGGCGGCCGCAG</td><td> 11</td><td> 289</td>
<td> 728573</td><td> 739</td><td> 754</td><td> 9779</td><td> 9794</td><td> CAGAGTAGGCGGCCGC</td><td> 25</td><td> 290</td>
<td> 728574</td><td> 741</td><td> 756</td><td> 9781</td><td> 9796</td><td> TGCAGAGTAGGCGGCC</td><td> 12</td><td> 291</td>
<td> 728575</td><td> 743</td><td> 758</td><td> 9783</td><td> 9798</td><td> GCTGCAGAGTAGGCGG</td><td> 44</td><td> 292</td>
<td> 728576</td><td> 745</td><td> 760</td><td> 9785</td><td> 9800</td><td> CGGCTGCAGAGTAGGC</td><td> 37</td><td> 293</td>
<td> 728577</td><td> 747</td><td> 762</td><td> 9787</td><td> 9802</td><td> GGCGGCTGCAGAGTAG</td><td> 45</td><td> 294</td>
<td> 728578</td><td> 756</td><td> 771</td><td> 9796</td><td> 9811</td><td> TGCAGAGTGGGCGGCT</td><td> 9</td><td> 295</td>
<td> 728579</td><td> 764</td><td> 779</td><td> 9804</td><td> 9819</td><td> CGGGCGGCTGCAGAGT</td><td> 61</td><td> 296</td>
<td> 728580</td><td> 765</td><td> 780</td><td> 9805</td><td> 9820</td><td> ACGGGCGGCTGCAGAG</td><td> 28</td><td> 297</td>
<td> 728581</td><td> 767</td><td> 782</td><td> 9807</td><td> 9822</td><td> CCACGGGCGGCTGCAG</td><td> 17</td><td> 298</td>
<td> 728582</td><td> 768</td><td> 783</td><td> 9808</td><td> 9823</td><td> ACCACGGGCGGCTGCA</td><td> 29</td><td> 299</td>
<td> 728583</td><td> 769</td><td> 784</td><td> 9809</td><td> 9824</td><td> CACCACGGGCGGCTGC</td><td> 26</td><td> 300</td>
<td> 728584</td><td> 771</td><td> 786</td><td> 9811</td><td> 9826</td><td> AGCACCACGGGCGGCT</td><td> 7</td><td> 301</td>
<td> 728585</td><td> 773</td><td> 788</td><td> 9813</td><td> 9828</td><td> CCAGCACCACGGGCGG</td><td> 41</td><td> 302</td>
<td> 728586</td><td> 775</td><td> 790</td><td> 9815</td><td> 9830</td><td> ACCCAGCACCACGGGC</td><td> 19</td><td> 303</td>
<td> 728587</td><td> 777</td><td> 792</td><td> 9817</td><td> 9832</td><td> GGACCCAGCACCACGG</td><td> 41</td><td> 304</td>
<td> 728588</td><td> 830</td><td> 845</td><td> 9870</td><td> 9885</td><td> AGCCAGCAGGGTTGCC</td><td> 26</td><td> 305</td>
<td> 728589</td><td> 832</td><td> 847</td><td> 9872</td><td> 9887</td><td> GAAGCCAGCAGGGTTG</td><td> 16</td><td> 306</td>
<td> 728590</td><td> 834</td><td> 849</td><td> 9874</td><td> 9889</td><td> CTGAAGCCAGCAGGGT</td><td> 26</td><td> 307</td>
<td> 728591</td><td> 845</td><td> 860</td><td> 9885</td><td> 9900</td><td> AGAGAAGCTCCCTGAA</td><td> 8</td><td> 308</td>
<td> 728592</td><td> 849</td><td> 864</td><td> 9889</td><td> 9904</td><td> TCAGAGAGAAGCTCCC</td><td> 3</td><td> 309</td>
Table 5
Inhibition of IRF5 RNA by 3-10-3 cEt gapmers targeting SEQ ID NO: 1 and 2
<td> Compound Number</td><td> SEQ ID NO: 1 Start Site</td><td> SEQ ID NO: 1 Stop Site</td><td> SEQ ID NO: 2 Start Site</td><td> SEQ ID NO: 2 Stop Site</td><td> Sequence (5' to 3')</td><td> IRF5 (% Inhibition)</td><td> SEQ ID NO</td>
<td> 642685</td><td> 1098</td><td> 1113</td><td> 10331</td><td> 10346</td><td> AAGCGCACTTGCTCCA</td><td> 33</td><td> 310</td>
<td> 665862</td><td> 913</td><td> 928</td><td> 9953</td><td> 9968</td><td> GTCTGGCAGGAGCTGT</td><td> 51</td><td> 311</td>
<td> 665878</td><td> 1096</td><td> 1111</td><td> 10329</td><td> 10344</td><td> GCGCACTTGCTCCAGG</td><td> 58</td><td> 312</td>
<td> 665884</td><td> 1181</td><td> 1196</td><td> 10414</td><td> 10429</td><td> GGATGAGCCCGCGGTC</td><td> 56</td><td> 313</td>
<td> 665893</td><td> 1228</td><td> 1243</td><td> 10461</td><td> 10476</td><td> GCACTGACACAGGCGG</td><td> 76</td><td> 39</td>
<td> 728593</td><td> 853</td><td> 868</td><td> 9893</td><td> 9908</td><td> GACCTCAGAGAGAAGC</td><td> 10</td><td> 314</td>
<td> 728594</td><td> 862</td><td> 877</td><td> 9902</td><td> 9917</td><td> AGGCTCCAGGACCTCA</td><td> 7</td><td> 315</td>
<td> 728595</td><td> 902</td><td> 917</td><td> 9942</td><td> 9957</td><td> GCTGTTCGCCTGCAGG</td><td> 59</td><td> 316</td>
<td> 728596</td><td> 904</td><td> 919</td><td> 9944</td><td> 9959</td><td> GAGCTGTTCGCCTGCA</td><td> 14</td><td> 317</td>
<td> 728597</td><td> 906</td><td> 921</td><td> 9946</td><td> 9961</td><td> AGGAGCTGTTCGCCTG</td><td> 4</td><td> 318</td>
<td> 728598</td><td> 908</td><td> 923</td><td> 9948</td><td> 9963</td><td> GCAGGAGCTGTTCGCC</td><td> 44</td><td> 319</td>
<td> 728599</td><td> 909</td><td> 924</td><td> 9949</td><td> 9964</td><td> GGCAGGAGCTGTTCGC</td><td> 30</td><td> 320</td>
<td> 728600</td><td> 910</td><td> 925</td><td> 9950</td><td> 9965</td><td> TGGCAGGAGCTGTTCG</td><td> 15</td><td> 321</td>
<td> 728601</td><td> 911</td><td> 926</td><td> 9951</td><td> 9966</td><td> CTGGCAGGAGCTGTTC</td><td> 34</td><td> 322</td>
<td> 728602</td><td> 912</td><td> 927</td><td> 9952</td><td> 9967</td><td> TCTGGCAGGAGCTGTT</td><td> 33</td><td> 323</td>
<td> 728603</td><td> 914</td><td> 929</td><td> 9954</td><td> 9969</td><td> GGTCTGGCAGGAGCTG</td><td> 49</td><td> 324</td>
<td> 728604</td><td> 915</td><td> 930</td><td> 9955</td><td> 9970</td><td> AGGTCTGGCAGGAGCT</td><td> 60</td><td> 325</td>
<td> 728605</td><td> 916</td><td> 931</td><td> 9956</td><td> 9971</td><td> CAGGTCTGGCAGGAGC</td><td> 53</td><td> 326</td>
<td> 728606</td><td> 918</td><td> 933</td><td> 9958</td><td> 9973</td><td> AGCAGGTCTGGCAGGA</td><td> 35</td><td> 327</td>
<td> 728607</td><td> 922</td><td> 937</td><td> 9962</td><td> 9977</td><td> GATCAGCAGGTCTGGC</td><td> 17</td><td> 328</td>
<td> 728608</td><td> 924</td><td> 939</td><td> 9964</td><td> 9979</td><td> CTGATCAGCAGGTCTG</td><td> 34</td><td> 329</td>
<td> 728609</td><td> 926</td><td> 941</td><td> 9966</td><td> 9981</td><td> GGCTGATCAGCAGGTC</td><td> 38</td><td> 330</td>
<td> 728610</td><td> 945</td><td> 960</td><td> N/A</td><td> N/A</td><td> GTCAGAGGCAGCATGT</td><td> 24</td><td> 331</td>
<td> 728611</td><td> 947</td><td> 962</td><td> N/A</td><td> N/A</td><td> CGGTCAGAGGCAGCAT</td><td> 54</td><td> 332</td>
<td> 728612</td><td> 949</td><td> 964</td><td> N/A</td><td> N/A</td><td> GTCGGTCAGAGGCAGC</td><td> 44</td><td> 333</td>
<td> 728613</td><td> 952</td><td> 967</td><td> N/A</td><td> N/A</td><td> CAGGTCGGTCAGAGGC</td><td> 47</td><td> 334</td>
<td> 728614</td><td> 954</td><td> 969</td><td> N/A</td><td> N/A</td><td> TCCAGGTCGGTCAGAG</td><td> 24</td><td> 335</td>
<td> 728615</td><td> 1001</td><td> 1016</td><td> 10234</td><td> 10249</td><td> TGATGGTGAGGGCCCG</td><td> 18</td><td> 336</td>
<td> 728616</td><td> 1003</td><td> 1018</td><td> 10236</td><td> 10251</td><td> GCTGATGGTGAGGGCC</td><td> 14</td><td> 337</td>
<td> 728617</td><td> 1005</td><td> 1020</td><td> 10238</td><td> 10253</td><td> TTGCTGATGGTGAGGG</td><td> 37</td><td> 338</td>
<td> 728618</td><td> 1024</td><td> 1039</td><td> 10257</td><td> 10272</td><td> GAGCCGGCAGCCATGG</td><td> 13</td><td> 339</td>
<td> 728619</td><td> 1032</td><td> 1047</td><td> 10265</td><td> 10280</td><td> CTGTAGAAGAGCCGGC</td><td> 0</td><td> 340</td>
<td> 728620</td><td> 1034</td><td> 1049</td><td> 10267</td><td> 10282</td><td> GGCTGTAGAAGAGCCG</td><td> 0</td><td> 341</td>
<td> 728621</td><td> 1036</td><td> 1051</td><td> 10269</td><td> 10284</td><td> CTGGCTGTAGAAGAGC</td><td> 21</td><td> 342</td>
<td> 728622</td><td> 1038</td><td> 1053</td><td> 10271</td><td> 10286</td><td> AGCTGGCTGTAGAAGA</td><td> 9</td><td> 343</td>
<td> 728623</td><td> 1040</td><td> 1055</td><td> 10273</td><td> 10288</td><td> CCAGCTGGCTGTAGAA</td><td> 5</td><td> 344</td>
<td> 728624</td><td> 1067</td><td> 1082</td><td> 10300</td><td> 10315</td><td> AGAGTTCCACCTGCTC</td><td> 23</td><td> 345</td>
<td> 728625</td><td> 1069</td><td> 1084</td><td> 10302</td><td> 10317</td><td> GAAGAGTTCCACCTGC</td><td> 14</td><td> 346</td>
<td> 728626</td><td> 1072</td><td> 1087</td><td> 10305</td><td> 10320</td><td> GCCGAAGAGTTCCACC</td><td> 22</td><td> 347</td>
<td> 728627</td><td> 1074</td><td> 1089</td><td> 10307</td><td> 10322</td><td> GGGCCGAAGAGTTCCA</td><td> 13</td><td> 348</td>
<td> 728628</td><td> 1091</td><td> 1106</td><td> 10324</td><td> 10339</td><td> CTTGCTCCAGGCTTAT</td><td> 24</td><td> 349</td>
<td> 728629</td><td> 1093</td><td> 1108</td><td> 10326</td><td> 10341</td><td> CACTTGCTCCAGGCTT</td><td> 46</td><td> 350</td>
<td> 728630</td><td> 1094</td><td> 1109</td><td> 10327</td><td> 10342</td><td> GCACTTGCTCCAGGCT</td><td> 66</td><td> 351</td>
<td> 728631</td><td> 1095</td><td> 1110</td><td> 10328</td><td> 10343</td><td> CGCACTTGCTCCAGGC</td><td> 62</td><td> 352</td>
<td> 728632</td><td> 1097</td><td> 1112</td><td> 10330</td><td> 10345</td><td> AGCGCACTTGCTCCAG</td><td> 55</td><td> 353</td>
<td> 728633</td><td> 1099</td><td> 1114</td><td> 10332</td><td> 10347</td><td> GAAGCGCACTTGCTCC</td><td> 43</td><td> 354</td>
<td> 728634</td><td> 1100</td><td> 1115</td><td> 10333</td><td> 10348</td><td> GGAAGCGCACTTGCTC</td><td> 57</td><td> 355</td>
<td> 728635</td><td> 1101</td><td> 1116</td><td> 10334</td><td> 10349</td><td> GGGAAGCGCACTTGCT</td><td> 59</td><td> 356</td>
<td> 728636</td><td> 1117</td><td> 1132</td><td> 10350</td><td> 10365</td><td> GATGTCCTCAGGGCTG</td><td> 22</td><td> 357</td>
<td> 728637</td><td> 1134</td><td> 1149</td><td> 10367</td><td> 10382</td><td> CGCTGCTTGTCACTGG</td><td> 67</td><td> 358</td>
<td> 728638</td><td> 1161</td><td> 1176</td><td> 10394</td><td> 10409</td><td> ACATCCAGCAGCTGGT</td><td> 0</td><td> 359</td>
<td> 728639</td><td> 1163</td><td> 1178</td><td> 10396</td><td> 10411</td><td> GGACATCCAGCAGCTG</td><td> 8</td><td> 360</td>
<td> 728640</td><td> 1170</td><td> 1185</td><td> 10403</td><td> 10418</td><td> CGGTCCAGGACATCCA</td><td> 32</td><td> 361</td>
<td> 728641</td><td> 1172</td><td> 1187</td><td> 10405</td><td> 10420</td><td> CGCGGTCCAGGACATC</td><td> 47</td><td> 362</td>
<td> 728642</td><td> 1174</td><td> 1189</td><td> 10407</td><td> 10422</td><td> CCCGCGGTCCAGGACA</td><td> 11</td><td> 363</td>
<td> 728643</td><td> 1176</td><td> 1191</td><td> 10409</td><td> 10424</td><td> AGCCCGCGGTCCAGGA</td><td> 20</td><td> 364</td>
<td> 728644</td><td> 1177</td><td> 1192</td><td> 10410</td><td> 10425</td><td> GAGCCCGCGGTCCAGG</td><td> 48</td><td> 365</td>
<td> 728645</td><td> 1179</td><td> 1194</td><td> 10412</td><td> 10427</td><td> ATGAGCCCGCGGTCCA</td><td> 44</td><td> 366</td>
<td> 728646</td><td> 1180</td><td> 1195</td><td> 10413</td><td> 10428</td><td> GATGAGCCCGCGGTCC</td><td> 59</td><td> 367</td>
<td> 728647</td><td> 1182</td><td> 1197</td><td> 10415</td><td> 10430</td><td> AGGATGAGCCCGCGGT</td><td> 49</td><td> 368</td>
<td> 728648</td><td> 1183</td><td> 1198</td><td> 10416</td><td> 10431</td><td> GAGGATGAGCCCGCGG</td><td> 36</td><td> 369</td>
<td> 728649</td><td> 1184</td><td> 1199</td><td> 10417</td><td> 10432</td><td> GGAGGATGAGCCCGCG</td><td> 14</td><td> 370</td>
<td> 728650</td><td> 1185</td><td> 1200</td><td> 10418</td><td> 10433</td><td> TGGAGGATGAGCCCGC</td><td> 27</td><td> 371</td>
<td> 728651</td><td> 1186</td><td> 1201</td><td> 10419</td><td> 10434</td><td> CTGGAGGATGAGCCCG</td><td> 17</td><td> 372</td>
<td> 728652</td><td> 1188</td><td> 1203</td><td> 10421</td><td> 10436</td><td> AGCTGGAGGATGAGCC</td><td> 0</td><td> 373</td>
<td> 728653</td><td> 1190</td><td> 1205</td><td> 10423</td><td> 10438</td><td> GTAGCTGGAGGATGAG</td><td> 13</td><td> 374</td>
<td> 728654</td><td> 1192</td><td> 1207</td><td> 10425</td><td> 10440</td><td> CTGTAGCTGGAGGATG</td><td> 3</td><td> 375</td>
<td> 728655</td><td> 1194</td><td> 1209</td><td> 10427</td><td> 10442</td><td> CCCTGTAGCTGGAGGA</td><td> 4</td><td> 376</td>
<td> 728656</td><td> 1196</td><td> 1211</td><td> 10429</td><td> 10444</td><td> GGCCCTGTAGCTGGAG</td><td> 24</td><td> 377</td>
<td> 728657</td><td> 1198</td><td> 1213</td><td> 10431</td><td> 10446</td><td> CTGGCCCTGTAGCTGG</td><td> 9</td><td> 378</td>
<td> 728658</td><td> 1201</td><td> 1216</td><td> 10434</td><td> 10449</td><td> GTCCTGGCCCTGTAGC</td><td> 25</td><td> 379</td>
<td> 728659</td><td> 1203</td><td> 1218</td><td> 10436</td><td> 10451</td><td> AGGTCCTGGCCCTGTA</td><td> 43</td><td> 380</td>
<td> 728660</td><td> 1205</td><td> 1220</td><td> 10438</td><td> 10453</td><td> AAAGGTCCTGGCCCTG</td><td> 23</td><td> 381</td>
<td> 728661</td><td> 1207</td><td> 1222</td><td> 10440</td><td> 10455</td><td> ATAAAGGTCCTGGCCC</td><td> 10</td><td> 382</td>
<td> 728662</td><td> 1209</td><td> 1224</td><td> 10442</td><td> 10457</td><td> GCATAAAGGTCCTGGC</td><td> 31</td><td> 383</td>
<td> 728663</td><td> 1211</td><td> 1226</td><td> 10444</td><td> 10459</td><td> TGGCATAAAGGTCCTG</td><td> 46</td><td> 384</td>
<td> 728664</td><td> 1213</td><td> 1228</td><td> 10446</td><td> 10461</td><td> GATGGCATAAAGGTCC</td><td> 42</td><td> 385</td>
<td> 728665</td><td> 1215</td><td> 1230</td><td> 10448</td><td> 10463</td><td> CGGATGGCATAAAGGT</td><td> 39</td><td> 386</td>
Table 6
Inhibition of IRF5 RNA by 3-10-3 cEt gapmers targeting SEQ ID NO: 1 and 2
<td> Compound Number</td><td> SEQ ID NO: 1 Start Site</td><td> SEQ ID NO: 1 Stop Site</td><td> SEQ ID NO: 2 Start Site</td><td> SEQ ID NO: 2 Stop Site</td><td> Sequence (5' to 3')</td><td> IRF5 (% Inhibition)</td><td> SEQ ID NO</td>
<td> 665892</td><td> 1227</td><td> 1242</td><td> 10460</td><td> 10475</td><td> CACTGACACAGGCGGA</td><td> 68</td><td> 387</td>
<td> 665893</td><td> 1228</td><td> 1243</td><td> 10461</td><td> 10476</td><td> GCACTGACACAGGCGG</td><td> 65</td><td> 39</td>
<td> 665894</td><td> 1229</td><td> 1244</td><td> 10462</td><td> 10477</td><td> TGCACTGACACAGGCG</td><td> 42</td><td> 388</td>
<td> 665895</td><td> 1242</td><td> 1257</td><td> 10475</td><td> 10490</td><td> CTCCAGAACACCTTGC</td><td> 44</td><td> 389</td>
<td> 665900</td><td> 1272</td><td> 1287</td><td> 10505</td><td> 10520</td><td> CATGAGTCATGGGCTG</td><td> 54</td><td> 390</td>
<td> 665902</td><td> 1301</td><td> 1316</td><td> 10534</td><td> 10549</td><td> TCTTGACCTCCCGCTG</td><td> 37</td><td> 391</td>
<td> 665903</td><td> 1309</td><td> 1324</td><td> 10542</td><td> 10557</td><td> AAGCTTGGTCTTGACC</td><td> 49</td><td> 392</td>
<td> 665908</td><td> 1363</td><td> 1378</td><td> 10684</td><td> 10699</td><td> GGTCTGGCCCTTTTGG</td><td> 66</td><td> 393</td>
<td> 728666</td><td> 1217</td><td> 1232</td><td> 10450</td><td> 10465</td><td> GGCGGATGGCATAAAG</td><td> 32</td><td> 394</td>
<td> 728667</td><td> 1223</td><td> 1238</td><td> 10456</td><td> 10471</td><td> GACACAGGCGGATGGC</td><td> 49</td><td> 395</td>
<td> 728668</td><td> 1224</td><td> 1239</td><td> 10457</td><td> 10472</td><td> TGACACAGGCGGATGG</td><td> 27</td><td> 396</td>
<td> 728669</td><td> 1226</td><td> 1241</td><td> 10459</td><td> 10474</td><td> ACTGACACAGGCGGAT</td><td> 51</td><td> 397</td>
<td> 728670</td><td> 1230</td><td> 1245</td><td> 10463</td><td> 10478</td><td> TTGCACTGACACAGGC</td><td> 68</td><td> 398</td>
<td> 728671</td><td> 1231</td><td> 1246</td><td> 10464</td><td> 10479</td><td> CTTGCACTGACACAGG</td><td> 42</td><td> 399</td>
<td> 728672</td><td> 1232</td><td> 1247</td><td> 10465</td><td> 10480</td><td> CCTTGCACTGACACAG</td><td> 56</td><td> 400</td>
<td> 728673</td><td> 1233</td><td> 1248</td><td> 10466</td><td> 10481</td><td> ACCTTGCACTGACACA</td><td> 60</td><td> 401</td>
<td> 728674</td><td> 1234</td><td> 1249</td><td> 10467</td><td> 10482</td><td> CACCTTGCACTGACAC</td><td> 57</td><td> 402</td>
<td> 728675</td><td> 1237</td><td> 1252</td><td> 10470</td><td> 10485</td><td> GAACACCTTGCACTGA</td><td> 34</td><td> 403</td>
<td> 728676</td><td> 1238</td><td> 1253</td><td> 10471</td><td> 10486</td><td> AGAACACCTTGCACTG</td><td> 39</td><td> 404</td>
<td> 728677</td><td> 1239</td><td> 1254</td><td> 10472</td><td> 10487</td><td> CAGAACACCTTGCACT</td><td> 25</td><td> 405</td>
<td> 728678</td><td> 1240</td><td> 1255</td><td> 10473</td><td> 10488</td><td> CCAGAACACCTTGCAC</td><td> 30</td><td> 406</td>
<td> 728679</td><td> 1241</td><td> 1256</td><td> 10474</td><td> 10489</td><td> TCCAGAACACCTTGCA</td><td> 39</td><td> 407</td>
<td> 728680</td><td> 1243</td><td> 1258</td><td> 10476</td><td> 10491</td><td> GCTCCAGAACACCTTG</td><td> 39</td><td> 408</td>
<td> 728681</td><td> 1244</td><td> 1259</td><td> 10477</td><td> 10492</td><td> CGCTCCAGAACACCTT</td><td> 59</td><td> 409</td>
<td> 728682</td><td> 1245</td><td> 1260</td><td> 10478</td><td> 10493</td><td> CCGCTCCAGAACACCT</td><td> 37</td><td> 410</td>
<td> 728683</td><td> 1246</td><td> 1261</td><td> 10479</td><td> 10494</td><td> CCCGCTCCAGAACACC</td><td> 41</td><td> 411</td>
<td> 728684</td><td> 1247</td><td> 1262</td><td> 10480</td><td> 10495</td><td> GCCCGCTCCAGAACAC</td><td> 19</td><td> 412</td>
<td> 728685</td><td> 1249</td><td> 1264</td><td> 10482</td><td> 10497</td><td> AGGCCCGCTCCAGAAC</td><td> 24</td><td> 413</td>
<td> 728686</td><td> 1251</td><td> 1266</td><td> 10484</td><td> 10499</td><td> CAAGGCCCGCTCCAGA</td><td> 28</td><td> 414</td>
<td> 728687</td><td> 1253</td><td> 1268</td><td> 10486</td><td> 10501</td><td> CACAAGGCCCGCTCCA</td><td> 16</td><td> 415</td>
<td> 728688</td><td> 1255</td><td> 1270</td><td> 10488</td><td> 10503</td><td> GGCACAAGGCCCGCTC</td><td> 12</td><td> 416</td>
<td> 728689</td><td> 1257</td><td> 1272</td><td> 10490</td><td> 10505</td><td> GAGGCACAAGGCCCGC</td><td> 17</td><td> 417</td>
<td> 728690</td><td> 1259</td><td> 1274</td><td> 10492</td><td> 10507</td><td> CTGAGGCACAAGGCCC</td><td> 13</td><td> 418</td>
<td> 728691</td><td> 1264</td><td> 1279</td><td> 10497</td><td> 10512</td><td> ATGGGCTGAGGCACAA</td><td> 42</td><td> 419</td>
<td> 728692</td><td> 1267</td><td> 1282</td><td> 10500</td><td> 10515</td><td> GTCATGGGCTGAGGCA</td><td> 51</td><td> 420</td>
<td> 728693</td><td> 1268</td><td> 1283</td><td> 10501</td><td> 10516</td><td> AGTCATGGGCTGAGGC</td><td> 52</td><td> 421</td>
<td> 728694</td><td> 1269</td><td> 1284</td><td> 10502</td><td> 10517</td><td> GAGTCATGGGCTGAGG</td><td> 59</td><td> 422</td>
<td> 728695</td><td> 1270</td><td> 1285</td><td> 10503</td><td> 10518</td><td> TGAGTCATGGGCTGAG</td><td> 67</td><td> 423</td>
<td> 728696</td><td> 1271</td><td> 1286</td><td> 10504</td><td> 10519</td><td> ATGAGTCATGGGCTGA</td><td> 75</td><td> 424</td>
<td> 728697</td><td> 1273</td><td> 1288</td><td> 10506</td><td> 10521</td><td> GCATGAGTCATGGGCT</td><td> 23</td><td> 425</td>
<td> 728698</td><td> 1274</td><td> 1289</td><td> 10507</td><td> 10522</td><td> GGCATGAGTCATGGGC</td><td> 47</td><td> 426</td>
<td> 728699</td><td> 1296</td><td> 1311</td><td> 10529</td><td> 10544</td><td> ACCTCCCGCTGGATGG</td><td> 45</td><td> 427</td>
<td> 728700</td><td> 1297</td><td> 1312</td><td> 10530</td><td> 10545</td><td> GACCTCCCGCTGGATG</td><td> 38</td><td> 428</td>
<td> 728701</td><td> 1298</td><td> 1313</td><td> 10531</td><td> 10546</td><td> TGACCTCCCGCTGGAT</td><td> 53</td><td> 429</td>
<td> 728702</td><td> 1299</td><td> 1314</td><td> 10532</td><td> 10547</td><td> TTGACCTCCCGCTGGA</td><td> 38</td><td> 430</td>
<td> 728703</td><td> 1300</td><td> 1315</td><td> 10533</td><td> 10548</td><td> CTTGACCTCCCGCTGG</td><td> 33</td><td> 431</td>
<td> 728704</td><td> 1302</td><td> 1317</td><td> 10535</td><td> 10550</td><td> GTCTTGACCTCCCGCT</td><td> 56</td><td> 432</td>
<td> 728705</td><td> 1303</td><td> 1318</td><td> 10536</td><td> 10551</td><td> GGTCTTGACCTCCCGC</td><td> 71</td><td> 433</td>
<td> 728706</td><td> 1306</td><td> 1321</td><td> 10539</td><td> 10554</td><td> CTTGGTCTTGACCTCC</td><td> 73</td><td> 434</td>
<td> 728707</td><td> 1307</td><td> 1322</td><td> 10540</td><td> 10555</td><td> GCTTGGTCTTGACCTC</td><td> 79</td><td> 435</td>
<td> 728708</td><td> 1308</td><td> 1323</td><td> 10541</td><td> 10556</td><td> AGCTTGGTCTTGACCT</td><td> 79</td><td> 436</td>
<td> 728709</td><td> 1310</td><td> 1325</td><td> 10543</td><td> 10558</td><td> AAAGCTTGGTCTTGAC</td><td> 46</td><td> 437</td>
<td> 728710</td><td> 1311</td><td> 1326</td><td> 10544</td><td> 10559</td><td> AAAAGCTTGGTCTTGA</td><td> 29</td><td> 438</td>
<td> 728711</td><td> 1312</td><td> 1327</td><td> 10545</td><td> 10560</td><td> GAAAAGCTTGGTCTTG</td><td> 24</td><td> 439</td>
<td> 728712</td><td> 1313</td><td> 1328</td><td> 10546</td><td> 10561</td><td> TGAAAAGCTTGGTCTT</td><td> 11</td><td> 440</td>
<td> 728713</td><td> 1314</td><td> 1329</td><td> 10547</td><td> 10562</td><td> CTGAAAAGCTTGGTCT</td><td> 13</td><td> 441</td>
<td> 728714</td><td> 1316</td><td> 1331</td><td> 10549</td><td> 10564</td><td> GGCTGAAAAGCTTGGT</td><td> 11</td><td> 442</td>
<td> 728715</td><td> 1318</td><td> 1333</td><td> 10551</td><td> 10566</td><td> CAGGCTGAAAAGCTTG</td><td> 1</td><td> 443</td>
<td> 728716</td><td> 1320</td><td> 1335</td><td> 10553</td><td> 10568</td><td> TCCAGGCTGAAAAGCT</td><td> 5</td><td> 444</td>
<td> 728717</td><td> 1340</td><td> 1355</td><td> N/A</td><td> N/A</td><td> TGAGCTCATTGAGAAA</td><td> 10</td><td> 445</td>
<td> 728718</td><td> 1342</td><td> 1357</td><td> N/A</td><td> N/A</td><td> GATGAGCTCATTGAGA</td><td> 33</td><td> 446</td>
<td> 728719</td><td> 1344</td><td> 1359</td><td> N/A</td><td> N/A</td><td> AGGATGAGCTCATTGA</td><td> 55</td><td> 447</td>
<td> 728720</td><td> 1346</td><td> 1361</td><td> N/A</td><td> N/A</td><td> ACAGGATGAGCTCATT</td><td> 41</td><td> 448</td>
<td> 728721</td><td> 1348</td><td> 1363</td><td> N/A</td><td> N/A</td><td> GAACAGGATGAGCTCA</td><td> 45</td><td> 449</td>
<td> 728722</td><td> 1350</td><td> 1365</td><td> 10671</td><td> 10686</td><td> TGGAACAGGATGAGCT</td><td> 47</td><td> 450</td>
<td> 728723</td><td> 1358</td><td> 1373</td><td> 10679</td><td> 10694</td><td> GGCCCTTTTGGAACAG</td><td> 29</td><td> 451</td>
<td> 728724</td><td> 1359</td><td> 1374</td><td> 10680</td><td> 10695</td><td> TGGCCCTTTTGGAACA</td><td> 34</td><td> 452</td>
<td> 728725</td><td> 1360</td><td> 1375</td><td> 10681</td><td> 10696</td><td> CTGGCCCTTTTGGAAC</td><td> 20</td><td> 453</td>
<td> 728726</td><td> 1361</td><td> 1376</td><td> 10682</td><td> 10697</td><td> TCTGGCCCTTTTGGAA</td><td> 14</td><td> 454</td>
<td> 728727</td><td> 1362</td><td> 1377</td><td> 10683</td><td> 10698</td><td> GTCTGGCCCTTTTGGA</td><td> 33</td><td> 455</td>
<td> 728728</td><td> 1364</td><td> 1379</td><td> 10685</td><td> 10700</td><td> TGGTCTGGCCCTTTTG</td><td> 56</td><td> 456</td>
<td> 728729</td><td> 1365</td><td> 1380</td><td> 10686</td><td> 10701</td><td> TTGGTCTGGCCCTTTT</td><td> 54</td><td> 457</td>
<td> 728730</td><td> 1366</td><td> 1381</td><td> 10687</td><td> 10702</td><td> GTTGGTCTGGCCCTTT</td><td> 53</td><td> 458</td>
<td> 728731</td><td> 1367</td><td> 1382</td><td> 10688</td><td> 10703</td><td> TGTTGGTCTGGCCCTT</td><td> 50</td><td> 459</td>
<td> 728732</td><td> 1368</td><td> 1383</td><td> 10689</td><td> 10704</td><td> GTGTTGGTCTGGCCCT</td><td> 47</td><td> 460</td>
<td> 728733</td><td> 1386</td><td> 1401</td><td> 10707</td><td> 10722</td><td> ATCTCGAAGGGTGGTG</td><td> 40</td><td> 461</td>
<td> 728734</td><td> 1389</td><td> 1404</td><td> 10710</td><td> 10725</td><td> AAGATCTCGAAGGGTG</td><td> 52</td><td> 462</td>
<td> 728735</td><td> 1392</td><td> 1407</td><td> 10713</td><td> 10728</td><td> AAGAAGATCTCGAAGG</td><td> 28</td><td> 463</td>
Table 7
Inhibition of IRF5 RNA by 3-10-3 cEt gapmers targeting SEQ ID NO: 1 and 2
<td> Compound Number</td><td> SEQ ID NO: 1 Start Site</td><td> SEQ ID NO: 1 Stop Site</td><td> SEQ ID NO: 2 Start Site</td><td> SEQ ID NO: 2 Stop Site</td><td> Sequence (5' to 3')</td><td> IRF5 (% Inhibition)</td><td> SEQ ID NO</td>
<td> 665893</td><td> 1228</td><td> 1243</td><td> 10461</td><td> 10476</td><td> GCACTGACACAGGCGG</td><td> 73</td><td> 39</td>
<td> 665925</td><td> 1506</td><td> 1521</td><td> 11071</td><td> 11086</td><td> GATAGCTCCCCTGAGA</td><td> 29</td><td> 464</td>
<td> 665926</td><td> 1512</td><td> 1527</td><td> 11077</td><td> 11092</td><td> GACCAAGATAGCTCCC</td><td> 50</td><td> 465</td>
<td> 665929</td><td> 1530</td><td> 1545</td><td> 11095</td><td> 11110</td><td> AGCCGGATACTATCAG</td><td> 49</td><td> 466</td>
<td> 665930</td><td> 1536</td><td> 1551</td><td> 11101</td><td> 11116</td><td> ATCTGTAGCCGGATAC</td><td> 39</td><td> 467</td>
<td> 665933</td><td> 1561</td><td> 1576</td><td> 11126</td><td> 11141</td><td> GCGGTCTTTGAGGTCT</td><td> 62</td><td> 468</td>
<td> 728736</td><td> 1394</td><td> 1409</td><td> 10715</td><td> 10730</td><td> AGAAGAAGATCTCGAA</td><td> 13</td><td> 469</td>
<td> 728737</td><td> 1396</td><td> 1411</td><td> 10717</td><td> 10732</td><td> GCAGAAGAAGATCTCG</td><td> 45</td><td> 470</td>
<td> 728738</td><td> 1419</td><td> 1434</td><td> 10740</td><td> 10755</td><td> CGGTCAGGCCATTCTT</td><td> 52</td><td> 471</td>
<td> 728739</td><td> 1421</td><td> 1436</td><td> 10742</td><td> 10757</td><td> TGCGGTCAGGCCATTC</td><td> 68</td><td> 472</td>
<td> 728740</td><td> 1423</td><td> 1438</td><td> 10744</td><td> 10759</td><td> TTTGCGGTCAGGCCAT</td><td> 37</td><td> 473</td>
<td> 728741</td><td> 1426</td><td> 1441</td><td> 10747</td><td> 10762</td><td> GGGTTTGCGGTCAGGC</td><td> 71</td><td> 474</td>
<td> 728742</td><td> 1441</td><td> 1456</td><td> 10762</td><td> 10777</td><td> GAGCTTCTTCTCTCGG</td><td> 22</td><td> 475</td>
<td> 728743</td><td> 1443</td><td> 1458</td><td> 10764</td><td> 10779</td><td> ATGAGCTTCTTCTCTC</td><td> 0</td><td> 476</td>
<td> 728744</td><td> 1445</td><td> 1460</td><td> 10766</td><td> 10781</td><td> TAATGAGCTTCTTCTC</td><td> 14</td><td> 477</td>
<td> 728745</td><td> 1447</td><td> 1462</td><td> 10768</td><td> 10783</td><td> AGTAATGAGCTTCTTC</td><td> 36</td><td> 478</td>
<td> 728746</td><td> 1449</td><td> 1464</td><td> 10770</td><td> 10785</td><td> ACAGTAATGAGCTTCT</td><td> 30</td><td> 479</td>
<td> 728747</td><td> 1451</td><td> 1466</td><td> 10772</td><td> 10787</td><td> GTACAGTAATGAGCTT</td><td> 26</td><td> 480</td>
<td> 728748</td><td> 1453</td><td> 1468</td><td> 10774</td><td> 10789</td><td> CTGTACAGTAATGAGC</td><td> 37</td><td> 481</td>
<td> 728749</td><td> 1455</td><td> 1470</td><td> 10776</td><td> 10791</td><td> ACCTGTACAGTAATGA</td><td> 28</td><td> 482</td>
<td> 728750</td><td> 1457</td><td> 1472</td><td> N/A</td><td> N/A</td><td> CCACCTGTACAGTAAT</td><td> 27</td><td> 483</td>
<td> 728751</td><td> 1459</td><td> 1474</td><td> N/A</td><td> N/A</td><td> CACCACCTGTACAGTA</td><td> 42</td><td> 484</td>
<td> 728752</td><td> 1461</td><td> 1476</td><td> N/A</td><td> N/A</td><td> GGCACCACCTGTACAG</td><td> 27</td><td> 485</td>
<td> 728753</td><td> 1463</td><td> 1478</td><td> N/A</td><td> N/A</td><td> CAGGCACCACCTGTAC</td><td> 53</td><td> 486</td>
<td> 728754</td><td> 1465</td><td> 1480</td><td> N/A</td><td> N/A</td><td> TACAGGCACCACCTGT</td><td> 0</td><td> 487</td>
<td> 728755</td><td> 1467</td><td> 1482</td><td> 11032</td><td> 11047</td><td> GCTACAGGCACCACCT</td><td> 37</td><td> 488</td>
<td> 728756</td><td> 1469</td><td> 1484</td><td> 11034</td><td> 11049</td><td> CTGCTACAGGCACCAC</td><td> 53</td><td> 489</td>
<td> 728757</td><td> 1471</td><td> 1486</td><td> 11036</td><td> 11051</td><td> AGCTGCTACAGGCACC</td><td> 41</td><td> 490</td>
<td> 728758</td><td> 1473</td><td> 1488</td><td> 11038</td><td> 11053</td><td> CGAGCTGCTACAGGCA</td><td> 54</td><td> 491</td>
<td> 728759</td><td> 1475</td><td> 1490</td><td> 11040</td><td> 11055</td><td> GTCGAGCTGCTACAGG</td><td> 63</td><td> 492</td>
<td> 728760</td><td> 1477</td><td> 1492</td><td> 11042</td><td> 11057</td><td> CAGTCGAGCTGCTACA</td><td> 34</td><td> 493</td>
<td> 728761</td><td> 1479</td><td> 1494</td><td> 11044</td><td> 11059</td><td> AGCAGTCGAGCTGCTA</td><td> 3</td><td> 494</td>
<td> 728762</td><td> 1481</td><td> 1496</td><td> 11046</td><td> 11061</td><td> GCAGCAGTCGAGCTGC</td><td> 13</td><td> 495</td>
<td> 728763</td><td> 1483</td><td> 1498</td><td> 11048</td><td> 11063</td><td> CAGCAGCAGTCGAGCT</td><td> 16</td><td> 496</td>
<td> 728764</td><td> 1485</td><td> 1500</td><td> 11050</td><td> 11065</td><td> TCCAGCAGCAGTCGAG</td><td> 23</td><td> 497</td>
<td> 728765</td><td> 1487</td><td> 1502</td><td> 11052</td><td> 11067</td><td> TCTCCAGCAGCAGTCG</td><td> 30</td><td> 498</td>
<td> 728766</td><td> 1489</td><td> 1504</td><td> 11054</td><td> 11069</td><td> CATCTCCAGCAGCAGT</td><td> 31</td><td> 499</td>
<td> 728767</td><td> 1492</td><td> 1507</td><td> 11057</td><td> 11072</td><td> GAACATCTCCAGCAGC</td><td> 47</td><td> 500</td>
<td> 728768</td><td> 1495</td><td> 1510</td><td> 11060</td><td> 11075</td><td> TGAGAACATCTCCAGC</td><td> 33</td><td> 501</td>
<td> 728769</td><td> 1497</td><td> 1512</td><td> 11062</td><td> 11077</td><td> CCTGAGAACATCTCCA</td><td> 60</td><td> 502</td>
<td> 728770</td><td> 1499</td><td> 1514</td><td> 11064</td><td> 11079</td><td> CCCCTGAGAACATCTC</td><td> 43</td><td> 503</td>
<td> 728771</td><td> 1501</td><td> 1516</td><td> 11066</td><td> 11081</td><td> CTCCCCTGAGAACATC</td><td> 42</td><td> 504</td>
<td> 728772</td><td> 1502</td><td> 1517</td><td> 11067</td><td> 11082</td><td> GCTCCCCTGAGAACAT</td><td> 55</td><td> 505</td>
<td> 728773</td><td> 1503</td><td> 1518</td><td> 11068</td><td> 11083</td><td> AGCTCCCCTGAGAACA</td><td> 54</td><td> 506</td>
<td> 728774</td><td> 1504</td><td> 1519</td><td> 11069</td><td> 11084</td><td> TAGCTCCCCTGAGAAC</td><td> 29</td><td> 507</td>
<td> 728775</td><td> 1505</td><td> 1520</td><td> 11070</td><td> 11085</td><td> ATAGCTCCCCTGAGAA</td><td> 15</td><td> 508</td>
<td> 728776</td><td> 1507</td><td> 1522</td><td> 11072</td><td> 11087</td><td> AGATAGCTCCCCTGAG</td><td> 42</td><td> 509</td>
<td> 728777</td><td> 1508</td><td> 1523</td><td> 11073</td><td> 11088</td><td> AAGATAGCTCCCCTGA</td><td> 52</td><td> 510</td>
<td> 728778</td><td> 1509</td><td> 1524</td><td> 11074</td><td> 11089</td><td> CAAGATAGCTCCCCTG</td><td> 64</td><td> 511</td>
<td> 728779</td><td> 1510</td><td> 1525</td><td> 11075</td><td> 11090</td><td> CCAAGATAGCTCCCCT</td><td> 50</td><td> 512</td>
<td> 728780</td><td> 1511</td><td> 1526</td><td> 11076</td><td> 11091</td><td> ACCAAGATAGCTCCCC</td><td> 21</td><td> 513</td>
<td> 728781</td><td> 1513</td><td> 1528</td><td> 11078</td><td> 11093</td><td> TGACCAAGATAGCTCC</td><td> 43</td><td> 514</td>
<td> 728782</td><td> 1514</td><td> 1529</td><td> 11079</td><td> 11094</td><td> CTGACCAAGATAGCTC</td><td> 51</td><td> 515</td>
<td> 728783</td><td> 1515</td><td> 1530</td><td> 11080</td><td> 11095</td><td> GCTGACCAAGATAGCT</td><td> 23</td><td> 516</td>
<td> 728784</td><td> 1516</td><td> 1531</td><td> 11081</td><td> 11096</td><td> AGCTGACCAAGATAGC</td><td> 31</td><td> 517</td>
<td> 728785</td><td> 1517</td><td> 1532</td><td> 11082</td><td> 11097</td><td> CAGCTGACCAAGATAG</td><td> 34</td><td> 518</td>
<td> 728786</td><td> 1519</td><td> 1534</td><td> 11084</td><td> 11099</td><td> ATCAGCTGACCAAGAT</td><td> 28</td><td> 519</td>
<td> 728787</td><td> 1521</td><td> 1536</td><td> 11086</td><td> 11101</td><td> CTATCAGCTGACCAAG</td><td> 48</td><td> 520</td>
<td> 728788</td><td> 1523</td><td> 1538</td><td> 11088</td><td> 11103</td><td> TACTATCAGCTGACCA</td><td> 49</td><td> 521</td>
<td> 728789</td><td> 1525</td><td> 1540</td><td> 11090</td><td> 11105</td><td> GATACTATCAGCTGAC</td><td> 58</td><td> 522</td>
<td> 728790</td><td> 1526</td><td> 1541</td><td> 11091</td><td> 11106</td><td> GGATACTATCAGCTGA</td><td> 51</td><td> 523</td>
<td> 728791</td><td> 1527</td><td> 1542</td><td> 11092</td><td> 11107</td><td> CGGATACTATCAGCTG</td><td> 55</td><td> 524</td>
<td> 728792</td><td> 1528</td><td> 1543</td><td> 11093</td><td> 11108</td><td> CCGGATACTATCAGCT</td><td> 41</td><td> 525</td>
<td> 728793</td><td> 1529</td><td> 1544</td><td> 11094</td><td> 11109</td><td> GCCGGATACTATCAGC</td><td> 68</td><td> 526</td>
<td> 728794</td><td> 1531</td><td> 1546</td><td> 11096</td><td> 11111</td><td> TAGCCGGATACTATCA</td><td> 40</td><td> 527</td>
<td> 728795</td><td> 1532</td><td> 1547</td><td> 11097</td><td> 11112</td><td> GTAGCCGGATACTATC</td><td> 48</td><td> 528</td>
<td> 728796</td><td> 1533</td><td> 1548</td><td> 11098</td><td> 11113</td><td> TGTAGCCGGATACTAT</td><td> 34</td><td> 529</td>
<td> 728797</td><td> 1534</td><td> 1549</td><td> 11099</td><td> 11114</td><td> CTGTAGCCGGATACTA</td><td> 52</td><td> 530</td>
<td> 728798</td><td> 1535</td><td> 1550</td><td> 11100</td><td> 11115</td><td> TCTGTAGCCGGATACT</td><td> 53</td><td> 531</td>
<td> 728799</td><td> 1537</td><td> 1552</td><td> 11102</td><td> 11117</td><td> GATCTGTAGCCGGATA</td><td> 46</td><td> 532</td>
<td> 728800</td><td> 1538</td><td> 1553</td><td> 11103</td><td> 11118</td><td> AGATCTGTAGCCGGAT</td><td> 67</td><td> 533</td>
<td> 728801</td><td> 1543</td><td> 1558</td><td> 11108</td><td> 11123</td><td> GTTTGAGATCTGTAGC</td><td> 55</td><td> 534</td>
<td> 728802</td><td> 1556</td><td> 1571</td><td> 11121</td><td> 11136</td><td> CTTTGAGGTCTGGGTT</td><td> 63</td><td> 535</td>
<td> 728803</td><td> 1557</td><td> 1572</td><td> 11122</td><td> 11137</td><td> TCTTTGAGGTCTGGGT</td><td> 55</td><td> 536</td>
<td> 728804</td><td> 1558</td><td> 1573</td><td> 11123</td><td> 11138</td><td> GTCTTTGAGGTCTGGG</td><td> 61</td><td> 537</td>
<td> 728805</td><td> 1559</td><td> 1574</td><td> 11124</td><td> 11139</td><td> GGTCTTTGAGGTCTGG</td><td> 58</td><td> 538</td>
<td> 728806</td><td> 1560</td><td> 1575</td><td> 11125</td><td> 11140</td><td> CGGTCTTTGAGGTCTG</td><td> 74</td><td> 539</td>
<td> 728807</td><td> 1562</td><td> 1577</td><td> 11127</td><td> 11142</td><td> TGCGGTCTTTGAGGTC</td><td> 58</td><td> 540</td>
Table 8
Inhibition of IRF5 RNA by 3-10-3 cEt gapmers targeting SEQ ID NO: 1 and 2
<td> Compound Number</td><td> SEQ ID NO: 1 Start Site</td><td> SEQ ID NO: 1 Stop Site</td><td> SEQ ID NO: 2 Start Site</td><td> SEQ ID NO: 2 Stop Site</td><td> Sequence (5' to 3')</td><td> IRF5 (% Inhibition)</td><td> SEQ ID NO</td>
<td> 665893</td><td> 1228</td><td> 1243</td><td> 10461</td><td> 10476</td><td> GCACTGACACAGGCGG</td><td> 72</td><td> 39</td>
<td> 665933</td><td> 1561</td><td> 1576</td><td> 11126</td><td> 11141</td><td> GCGGTCTTTGAGGTCT</td><td> 62</td><td> 468</td>
<td> 665942</td><td> 1613</td><td> 1628</td><td> 11178</td><td> 11193</td><td> ACCGCTGCTGGGACTG</td><td> 40</td><td> 541</td>
<td> 728808</td><td> 1563</td><td> 1578</td><td> 11128</td><td> 11143</td><td> ATGCGGTCTTTGAGGT</td><td> 37</td><td> 542</td>
<td> 728809</td><td> 1564</td><td> 1579</td><td> 11129</td><td> 11144</td><td> CATGCGGTCTTTGAGG</td><td> 17</td><td> 543</td>
<td> 728810</td><td> 1565</td><td> 1580</td><td> 11130</td><td> 11145</td><td> CCATGCGGTCTTTGAG</td><td> 43</td><td> 544</td>
<td> 728811</td><td> 1566</td><td> 1581</td><td> 11131</td><td> 11146</td><td> ACCATGCGGTCTTTGA</td><td> 26</td><td> 545</td>
<td> 728812</td><td> 1568</td><td> 1583</td><td> 11133</td><td> 11148</td><td> CCACCATGCGGTCTTT</td><td> 9</td><td> 546</td>
<td> 728813</td><td> 1570</td><td> 1585</td><td> 11135</td><td> 11150</td><td> CTCCACCATGCGGTCT</td><td> 22</td><td> 547</td>
<td> 728814</td><td> 1572</td><td> 1587</td><td> 11137</td><td> 11152</td><td> TGCTCCACCATGCGGT</td><td> 23</td><td> 548</td>
<td> 728815</td><td> 1574</td><td> 1589</td><td> 11139</td><td> 11154</td><td> ATTGCTCCACCATGCG</td><td> 0</td><td> 549</td>
<td> 728816</td><td> 1576</td><td> 1591</td><td> 11141</td><td> 11156</td><td> GAATTGCTCCACCATG</td><td> 0</td><td> 550</td>
<td> 728817</td><td> 1578</td><td> 1593</td><td> 11143</td><td> 11158</td><td> TTGAATTGCTCCACCA</td><td> 0</td><td> 551</td>
<td> 728818</td><td> 1580</td><td> 1595</td><td> 11145</td><td> 11160</td><td> CCTTGAATTGCTCCAC</td><td> 0</td><td> 552</td>
<td> 728819</td><td> 1582</td><td> 1597</td><td> 11147</td><td> 11162</td><td> CTCCTTGAATTGCTCC</td><td> 0</td><td> 553</td>
<td> 728820</td><td> 1584</td><td> 1599</td><td> 11149</td><td> 11164</td><td> AGCTCCTTGAATTGCT</td><td> 0</td><td> 554</td>
<td> 728821</td><td> 1586</td><td> 1601</td><td> 11151</td><td> 11166</td><td> GGAGCTCCTTGAATTG</td><td> 0</td><td> 555</td>
<td> 728822</td><td> 1588</td><td> 1603</td><td> 11153</td><td> 11168</td><td> ATGGAGCTCCTTGAAT</td><td> 2</td><td> 556</td>
<td> 728823</td><td> 1590</td><td> 1605</td><td> 11155</td><td> 11170</td><td> TGATGGAGCTCCTTGA</td><td> 0</td><td> 557</td>
<td> 728824</td><td> 1592</td><td> 1607</td><td> 11157</td><td> 11172</td><td> TGTGATGGAGCTCCTT</td><td> 0</td><td> 558</td>
<td> 728825</td><td> 1594</td><td> 1609</td><td> 11159</td><td> 11174</td><td> GATGTGATGGAGCTCC</td><td> 30</td><td> 559</td>
<td> 728826</td><td> 1596</td><td> 1611</td><td> 11161</td><td> 11176</td><td> CAGATGTGATGGAGCT</td><td> 27</td><td> 560</td>
<td> 728827</td><td> 1600</td><td> 1615</td><td> 11165</td><td> 11180</td><td> CTGCCAGATGTGATGG</td><td> 7</td><td> 561</td>
<td> 728828</td><td> 1602</td><td> 1617</td><td> 11167</td><td> 11182</td><td> GACTGCCAGATGTGAT</td><td> 0</td><td> 562</td>
<td> 728829</td><td> 1604</td><td> 1619</td><td> 11169</td><td> 11184</td><td> GGGACTGCCAGATGTG</td><td> 31</td><td> 563</td>
<td> 728830</td><td> 1606</td><td> 1621</td><td> 11171</td><td> 11186</td><td> CTGGGACTGCCAGATG</td><td> 40</td><td> 564</td>
<td> 728831</td><td> 1608</td><td> 1623</td><td> 11173</td><td> 11188</td><td> TGCTGGGACTGCCAGA</td><td> 24</td><td> 565</td>
<td> 728832</td><td> 1609</td><td> 1624</td><td> 11174</td><td> 11189</td><td> CTGCTGGGACTGCCAG</td><td> 19</td><td> 566</td>
<td> 728833</td><td> 1610</td><td> 1625</td><td> 11175</td><td> 11190</td><td> GCTGCTGGGACTGCCA</td><td> 24</td><td> 567</td>
<td> 728834</td><td> 1612</td><td> 1627</td><td> 11177</td><td> 11192</td><td> CCGCTGCTGGGACTGC</td><td> 37</td><td> 568</td>
<td> 728835</td><td> 1614</td><td> 1629</td><td> 11179</td><td> 11194</td><td> AACCGCTGCTGGGACT</td><td> 19</td><td> 569</td>
<td> 728836</td><td> 1616</td><td> 1631</td><td> 11181</td><td> 11196</td><td> GCAACCGCTGCTGGGA</td><td> 38</td><td> 570</td>
<td> 728837</td><td> 1618</td><td> 1633</td><td> 11183</td><td> 11198</td><td> CTGCAACCGCTGCTGG</td><td> 26</td><td> 571</td>
<td> 728838</td><td> 1620</td><td> 1635</td><td> 11185</td><td> 11200</td><td> GGCTGCAACCGCTGCT</td><td> 2</td><td> 572</td>
<td> 728839</td><td> 1624</td><td> 1639</td><td> 11189</td><td> 11204</td><td> CACAGGCTGCAACCGC</td><td> 26</td><td> 573</td>
<td> 728840</td><td> 1626</td><td> 1641</td><td> 11191</td><td> 11206</td><td> GCCACAGGCTGCAACC</td><td> 21</td><td> 574</td>
<td> 728841</td><td> 1628</td><td> 1643</td><td> 11193</td><td> 11208</td><td> GGGCCACAGGCTGCAA</td><td> 37</td><td> 575</td>
<td> 728842</td><td> 1650</td><td> 1665</td><td> 11215</td><td> 11230</td><td> AGGCCTGCTCCAGGAG</td><td> 0</td><td> 576</td>
<td> 728843</td><td> 1654</td><td> 1669</td><td> 11219</td><td> 11234</td><td> ACCAAGGCCTGCTCCA</td><td> 30</td><td> 577</td>
<td> 728844</td><td> 1656</td><td> 1671</td><td> 11221</td><td> 11236</td><td> ACACCAAGGCCTGCTC</td><td> 41</td><td> 578</td>
<td> 728845</td><td> 1659</td><td> 1674</td><td> 11224</td><td> 11239</td><td> CCAACACCAAGGCCTG</td><td> 8</td><td> 579</td>
<td> 728846</td><td> 1661</td><td> 1676</td><td> 11226</td><td> 11241</td><td> GGCCAACACCAAGGCC</td><td> 0</td><td> 580</td>
<td> 728847</td><td> 1663</td><td> 1678</td><td> 11228</td><td> 11243</td><td> CTGGCCAACACCAAGG</td><td> 18</td><td> 581</td>
<td> 728848</td><td> 1666</td><td> 1681</td><td> 11231</td><td> 11246</td><td> CCCCTGGCCAACACCA</td><td> 0</td><td> 582</td>
<td> 728849</td><td> 1668</td><td> 1683</td><td> 11233</td><td> 11248</td><td> GGCCCCTGGCCAACAC</td><td> 0</td><td> 583</td>
<td> 728850</td><td> 1670</td><td> 1685</td><td> 11235</td><td> 11250</td><td> AGGGCCCCTGGCCAAC</td><td> 21</td><td> 584</td>
<td> 728851</td><td> 1676</td><td> 1691</td><td> 11241</td><td> 11256</td><td> TAGGCCAGGGCCCCTG</td><td> 0</td><td> 585</td>
<td> 728852</td><td> 1678</td><td> 1693</td><td> 11243</td><td> 11258</td><td> CATAGGCCAGGGCCCC</td><td> 0</td><td> 586</td>
<td> 728853</td><td> 1680</td><td> 1695</td><td> 11245</td><td> 11260</td><td> TGCATAGGCCAGGGCC</td><td> 0</td><td> 587</td>
<td> 728854</td><td> 1682</td><td> 1697</td><td> 11247</td><td> 11262</td><td> GGTGCATAGGCCAGGG</td><td> 0</td><td> 588</td>
<td> 728855</td><td> 1684</td><td> 1699</td><td> 11249</td><td> 11264</td><td> TGGGTGCATAGGCCAG</td><td> 0</td><td> 589</td>
<td> 728856</td><td> 1687</td><td> 1702</td><td> 11252</td><td> 11267</td><td> AGCTGGGTGCATAGGC</td><td> 0</td><td> 590</td>
<td> 728857</td><td> 1690</td><td> 1705</td><td> 11255</td><td> 11270</td><td> GCCAGCTGGGTGCATA</td><td> 15</td><td> 591</td>
<td> 728858</td><td> 1693</td><td> 1708</td><td> 11258</td><td> 11273</td><td> CATGCCAGCTGGGTGC</td><td> 28</td><td> 592</td>
<td> 728859</td><td> 1695</td><td> 1710</td><td> 11260</td><td> 11275</td><td> TGCATGCCAGCTGGGT</td><td> 32</td><td> 593</td>
<td> 728860</td><td> 1697</td><td> 1712</td><td> 11262</td><td> 11277</td><td> ATTGCATGCCAGCTGG</td><td> 34</td><td> 594</td>
<td> 728861</td><td> 1699</td><td> 1714</td><td> 11264</td><td> 11279</td><td> TTATTGCATGCCAGCT</td><td> 19</td><td> 595</td>
<td> 728862</td><td> 1701</td><td> 1716</td><td> 11266</td><td> 11281</td><td> TGTTATTGCATGCCAG</td><td> 35</td><td> 596</td>
<td> 728863</td><td> 1703</td><td> 1718</td><td> 11268</td><td> 11283</td><td> CTTGTTATTGCATGCC</td><td> 51</td><td> 597</td>
<td> 728864</td><td> 1705</td><td> 1720</td><td> 11270</td><td> 11285</td><td> GCCTTGTTATTGCATG</td><td> 16</td><td> 598</td>
<td> 728865</td><td> 1707</td><td> 1722</td><td> 11272</td><td> 11287</td><td> CAGCCTTGTTATTGCA</td><td> 3</td><td> 599</td>
<td> 728866</td><td> 1709</td><td> 1724</td><td> 11274</td><td> 11289</td><td> TGCAGCCTTGTTATTG</td><td> 0</td><td> 600</td>
<td> 728867</td><td> 1711</td><td> 1726</td><td> 11276</td><td> 11291</td><td> TCTGCAGCCTTGTTAT</td><td> 0</td><td> 601</td>
<td> 728868</td><td> 1713</td><td> 1728</td><td> 11278</td><td> 11293</td><td> CGTCTGCAGCCTTGTT</td><td> 43</td><td> 602</td>
<td> 728869</td><td> 1715</td><td> 1730</td><td> 11280</td><td> 11295</td><td> ACCGTCTGCAGCCTTG</td><td> 51</td><td> 603</td>
<td> 728870</td><td> 1717</td><td> 1732</td><td> 11282</td><td> 11297</td><td> TCACCGTCTGCAGCCT</td><td> 14</td><td> 604</td>
<td> 728871</td><td> 1719</td><td> 1734</td><td> 11284</td><td> 11299</td><td> AGTCACCGTCTGCAGC</td><td> 36</td><td> 605</td>
<td> 728872</td><td> 1721</td><td> 1736</td><td> 11286</td><td> 11301</td><td> CCAGTCACCGTCTGCA</td><td> 57</td><td> 606</td>
<td> 728873</td><td> 1723</td><td> 1738</td><td> 11288</td><td> 11303</td><td> GGCCAGTCACCGTCTG</td><td> 6</td><td> 607</td>
<td> 728874</td><td> 1725</td><td> 1740</td><td> 11290</td><td> 11305</td><td> AGGGCCAGTCACCGTC</td><td> 28</td><td> 608</td>
<td> 728875</td><td> 1727</td><td> 1742</td><td> 11292</td><td> 11307</td><td> CCAGGGCCAGTCACCG</td><td> 30</td><td> 609</td>
<td> 728876</td><td> 1731</td><td> 1746</td><td> 11296</td><td> 11311</td><td> GAAGCCAGGGCCAGTC</td><td> 30</td><td> 610</td>
<td> 728877</td><td> 1742</td><td> 1757</td><td> 11307</td><td> 11322</td><td> CCGCCACCCAGGAAGC</td><td> 30</td><td> 611</td>
<td> 728878</td><td> 1744</td><td> 1759</td><td> 11309</td><td> 11324</td><td> CACCGCCACCCAGGAA</td><td> 9</td><td> 612</td>
<td> 728879</td><td> 1746</td><td> 1761</td><td> 11311</td><td> 11326</td><td> CGCACCGCCACCCAGG</td><td> 46</td><td> 613</td>
<td> 728880</td><td> 1748</td><td> 1763</td><td> 11313</td><td> 11328</td><td> TCCGCACCGCCACCCA</td><td> 29</td><td> 614</td>
<td> 728881</td><td> 1749</td><td> 1764</td><td> 11314</td><td> 11329</td><td> GTCCGCACCGCCACCC</td><td> 30</td><td> 615</td>
<td> 728882</td><td> 1750</td><td> 1765</td><td> 11315</td><td> 11330</td><td> AGTCCGCACCGCCACC</td><td> 27</td><td> 616</td>
<td> 728883</td><td> 1751</td><td> 1766</td><td> 11316</td><td> 11331</td><td> CAGTCCGCACCGCCAC</td><td> 56</td><td> 617</td>
Table 9
Inhibition of IRF5 RNA by 3-10-3 cEt gapmers targeting SEQ ID NO: 1 and 2
<td> Compound Number</td><td> SEQ ID NO: 1 Start Site</td><td> SEQ ID NO: 1 Stop Site</td><td> SEQ ID NO: 2 Start Site</td><td> SEQ ID NO: 2 Stop Site</td><td> Sequence (5' to 3')</td><td> IRF5 (% Inhibition)</td><td> SEQ ID NO</td>
<td> 665893</td><td> 1228</td><td> 1243</td><td> 10461</td><td> 10476</td><td> GCACTGACACAGGCGG</td><td> 74</td><td> 39</td>
<td> 665933</td><td> 1561</td><td> 1576</td><td> 11126</td><td> 11141</td><td> GCGGTCTTTGAGGTCT</td><td> 60</td><td> 468</td>
<td> 665962</td><td> 1753</td><td> 1768</td><td> 11318</td><td> 11333</td><td> ATCAGTCCGCACCGCC</td><td> 53</td><td> 618</td>
<td> 665964</td><td> 1765</td><td> 1780</td><td> 11330</td><td> 11345</td><td> TCACATCTCCACATCA</td><td> 36</td><td> 619</td>
<td> 665973</td><td> 1903</td><td> 1918</td><td> 11468</td><td> 11483</td><td> AGACCAGAGACAGCCC</td><td> 30</td><td> 620</td>
<td> 665975</td><td> 1911</td><td> 1926</td><td> 11476</td><td> 11491</td><td> GGCTGACCAGACCAGA</td><td> 40</td><td> 621</td>
<td> 665981</td><td> 1951</td><td> 1966</td><td> 11516</td><td> 11531</td><td> GAGTTCTTTCCCTGCT</td><td> 41</td><td> 622</td>
<td> 728884</td><td> 1752</td><td> 1767</td><td> 11317</td><td> 11332</td><td> TCAGTCCGCACCGCCA</td><td> 46</td><td> 623</td>
<td> 728885</td><td> 1754</td><td> 1769</td><td> 11319</td><td> 11334</td><td> CATCAGTCCGCACCGC</td><td> 23</td><td> 624</td>
<td> 728886</td><td> 1755</td><td> 1770</td><td> 11320</td><td> 11335</td><td> ACATCAGTCCGCACCG</td><td> 48</td><td> 625</td>
<td> 728887</td><td> 1756</td><td> 1771</td><td> 11321</td><td> 11336</td><td> CACATCAGTCCGCACC</td><td> 57</td><td> 626</td>
<td> 728888</td><td> 1757</td><td> 1772</td><td> 11322</td><td> 11337</td><td> CCACATCAGTCCGCAC</td><td> 37</td><td> 627</td>
<td> 728889</td><td> 1758</td><td> 1773</td><td> 11323</td><td> 11338</td><td> TCCACATCAGTCCGCA</td><td> 24</td><td> 628</td>
<td> 728890</td><td> 1760</td><td> 1775</td><td> 11325</td><td> 11340</td><td> TCTCCACATCAGTCCG</td><td> 33</td><td> 629</td>
<td> 728891</td><td> 1761</td><td> 1776</td><td> 11326</td><td> 11341</td><td> ATCTCCACATCAGTCC</td><td> 56</td><td> 630</td>
<td> 728892</td><td> 1762</td><td> 1777</td><td> 11327</td><td> 11342</td><td> CATCTCCACATCAGTC</td><td> 37</td><td> 631</td>
<td> 728893</td><td> 1763</td><td> 1778</td><td> 11328</td><td> 11343</td><td> ACATCTCCACATCAGT</td><td> 56</td><td> 632</td>
<td> 728894</td><td> 1764</td><td> 1779</td><td> 11329</td><td> 11344</td><td> CACATCTCCACATCAG</td><td> 65</td><td> 633</td>
<td> 728895</td><td> 1766</td><td> 1781</td><td> 11331</td><td> 11346</td><td> GTCACATCTCCACATC</td><td> 47</td><td> 634</td>
<td> 728896</td><td> 1767</td><td> 1782</td><td> 11332</td><td> 11347</td><td> TGTCACATCTCCACAT</td><td> 21</td><td> 635</td>
<td> 728897</td><td> 1768</td><td> 1783</td><td> 11333</td><td> 11348</td><td> CTGTCACATCTCCACA</td><td> 46</td><td> 636</td>
<td> 728898</td><td> 1769</td><td> 1784</td><td> 11334</td><td> 11349</td><td> GCTGTCACATCTCCAC</td><td> 73</td><td> 637</td>
<td> 728899</td><td> 1770</td><td> 1785</td><td> 11335</td><td> 11350</td><td> GGCTGTCACATCTCCA</td><td> 64</td><td> 638</td>
<td> 728900</td><td> 1786</td><td> 1801</td><td> 11351</td><td> 11366</td><td> GCCAGGTGCTCATCGG</td><td> 37</td><td> 639</td>
<td> 728901</td><td> 1788</td><td> 1803</td><td> 11353</td><td> 11368</td><td> CAGCCAGGTGCTCATC</td><td> 37</td><td> 640</td>
<td> 728902</td><td> 1790</td><td> 1805</td><td> 11355</td><td> 11370</td><td> GCCAGCCAGGTGCTCA</td><td> 42</td><td> 641</td>
<td> 728903</td><td> 1803</td><td> 1818</td><td> 11368</td><td> 11383</td><td> GTAGGACCCTGCAGCC</td><td> 31</td><td> 642</td>
<td> 728904</td><td> 1805</td><td> 1820</td><td> 11370</td><td> 11385</td><td> AGGTAGGACCCTGCAG</td><td> 6</td><td> 643</td>
<td> 728905</td><td> 1807</td><td> 1822</td><td> 11372</td><td> 11387</td><td> AGAGGTAGGACCCTGC</td><td> 60</td><td> 644</td>
<td> 728906</td><td> 1810</td><td> 1825</td><td> 11375</td><td> 11390</td><td> CCCAGAGGTAGGACCC</td><td> 42</td><td> 645</td>
<td> 728907</td><td> 1812</td><td> 1827</td><td> 11377</td><td> 11392</td><td> AACCCAGAGGTAGGAC</td><td> 32</td><td> 646</td>
<td> 728908</td><td> 1814</td><td> 1829</td><td> 11379</td><td> 11394</td><td> GAAACCCAGAGGTAGG</td><td> 44</td><td> 647</td>
<td> 728909</td><td> 1825</td><td> 1840</td><td> 11390</td><td> 11405</td><td> TCCACTTCCAGGAAAC</td><td> 25</td><td> 648</td>
<td> 728910</td><td> 1833</td><td> 1848</td><td> 11398</td><td> 11413</td><td> GGCCCAAATCCACTTC</td><td> 11</td><td> 649</td>
<td> 728911</td><td> 1835</td><td> 1850</td><td> 11400</td><td> 11415</td><td> TTGGCCCAAATCCACT</td><td> 9</td><td> 650</td>
<td> 728912</td><td> 1837</td><td> 1852</td><td> 11402</td><td> 11417</td><td> TCTTGGCCCAAATCCA</td><td> 22</td><td> 651</td>
<td> 728913</td><td> 1839</td><td> 1854</td><td> 11404</td><td> 11419</td><td> CTTCTTGGCCCAAATC</td><td> 15</td><td> 652</td>
<td> 728914</td><td> 1841</td><td> 1856</td><td> 11406</td><td> 11421</td><td> TCCTTCTTGGCCCAAA</td><td> 31</td><td> 653</td>
<td> 728915</td><td> 1859</td><td> 1874</td><td> 11424</td><td> 11439</td><td> CTCGGGCCTTTCTCCC</td><td> 2</td><td> 654</td>
<td> 728916</td><td> 1861</td><td> 1876</td><td> 11426</td><td> 11441</td><td> GGCTCGGGCCTTTCTC</td><td> 10</td><td> 655</td>
<td> 728917</td><td> 1884</td><td> 1899</td><td> 11449</td><td> 11464</td><td> AGAGAAAGGCCCGGGA</td><td> 0</td><td> 656</td>
<td> 728918</td><td> 1886</td><td> 1901</td><td> 11451</td><td> 11466</td><td> GGAGAGAAAGGCCCGG</td><td> 0</td><td> 657</td>
<td> 728919</td><td> 1898</td><td> 1913</td><td> 11463</td><td> 11478</td><td> AGAGACAGCCCAGGAG</td><td> 13</td><td> 658</td>
<td> 728920</td><td> 1901</td><td> 1916</td><td> 11466</td><td> 11481</td><td> ACCAGAGACAGCCCAG</td><td> 52</td><td> 659</td>
<td> 728921</td><td> 1902</td><td> 1917</td><td> 11467</td><td> 11482</td><td> GACCAGAGACAGCCCA</td><td> 42</td><td> 660</td>
<td> 728922</td><td> 1904</td><td> 1919</td><td> 11469</td><td> 11484</td><td> CAGACCAGAGACAGCC</td><td> 38</td><td> 661</td>
<td> 728923</td><td> 1905</td><td> 1920</td><td> 11470</td><td> 11485</td><td> CCAGACCAGAGACAGC</td><td> 17</td><td> 662</td>
<td> 728924</td><td> 1906</td><td> 1921</td><td> 11471</td><td> 11486</td><td> ACCAGACCAGAGACAG</td><td> 30</td><td> 663</td>
<td> 728925</td><td> 1907</td><td> 1922</td><td> 11472</td><td> 11487</td><td> GACCAGACCAGAGACA</td><td> 14</td><td> 664</td>
<td> 728926</td><td> 1908</td><td> 1923</td><td> 11473</td><td> 11488</td><td> TGACCAGACCAGAGAC</td><td> 7</td><td> 665</td>
<td> 728927</td><td> 1910</td><td> 1925</td><td> 11475</td><td> 11490</td><td> GCTGACCAGACCAGAG</td><td> 26</td><td> 666</td>
<td> 728928</td><td> 1912</td><td> 1927</td><td> 11477</td><td> 11492</td><td> AGGCTGACCAGACCAG</td><td> 14</td><td> 667</td>
<td> 728929</td><td> 1916</td><td> 1931</td><td> 11481</td><td> 11496</td><td> AGCCAGGCTGACCAGA</td><td> 13</td><td> 668</td>
<td> 728930</td><td> 1919</td><td> 1934</td><td> 11484</td><td> 11499</td><td> GAGAGCCAGGCTGACC</td><td> 26</td><td> 669</td>
<td> 728931</td><td> 1923</td><td> 1938</td><td> 11488</td><td> 11503</td><td> TCCCGAGAGCCAGGCT</td><td> 26</td><td> 670</td>
<td> 728932</td><td> 1925</td><td> 1940</td><td> 11490</td><td> 11505</td><td> TTTCCCGAGAGCCAGG</td><td> 26</td><td> 671</td>
<td> 728933</td><td> 1928</td><td> 1943</td><td> 11493</td><td> 11508</td><td> GAATTTCCCGAGAGCC</td><td> 34</td><td> 672</td>
<td> 728934</td><td> 1930</td><td> 1945</td><td> 11495</td><td> 11510</td><td> CTGAATTTCCCGAGAG</td><td> 33</td><td> 673</td>
<td> 728935</td><td> 1932</td><td> 1947</td><td> 11497</td><td> 11512</td><td> GGCTGAATTTCCCGAG</td><td> 39</td><td> 674</td>
<td> 728936</td><td> 1934</td><td> 1949</td><td> 11499</td><td> 11514</td><td> ATGGCTGAATTTCCCG</td><td> 39</td><td> 675</td>
<td> 728937</td><td> 1936</td><td> 1951</td><td> 11501</td><td> 11516</td><td> TCATGGCTGAATTTCC</td><td> 36</td><td> 676</td>
<td> 728938</td><td> 1938</td><td> 1953</td><td> 11503</td><td> 11518</td><td> GCTCATGGCTGAATTT</td><td> 30</td><td> 677</td>
<td> 728939</td><td> 1940</td><td> 1955</td><td> 11505</td><td> 11520</td><td> CTGCTCATGGCTGAAT</td><td> 40</td><td> 678</td>
<td> 728940</td><td> 1942</td><td> 1957</td><td> 11507</td><td> 11522</td><td> CCCTGCTCATGGCTGA</td><td> 51</td><td> 679</td>
<td> 728941</td><td> 1946</td><td> 1961</td><td> 11511</td><td> 11526</td><td> CTTTCCCTGCTCATGG</td><td> 45</td><td> 680</td>
<td> 728942</td><td> 1947</td><td> 1962</td><td> 11512</td><td> 11527</td><td> TCTTTCCCTGCTCATG</td><td> 54</td><td> 681</td>
<td> 728943</td><td> 1948</td><td> 1963</td><td> 11513</td><td> 11528</td><td> TTCTTTCCCTGCTCAT</td><td> 16</td><td> 682</td>
<td> 728944</td><td> 1949</td><td> 1964</td><td> 11514</td><td> 11529</td><td> GTTCTTTCCCTGCTCA</td><td> 56</td><td> 683</td>
<td> 728945</td><td> 1950</td><td> 1965</td><td> 11515</td><td> 11530</td><td> AGTTCTTTCCCTGCTC</td><td> 56</td><td> 684</td>
<td> 728946</td><td> 1952</td><td> 1967</td><td> 11517</td><td> 11532</td><td> AGAGTTCTTTCCCTGC</td><td> 56</td><td> 685</td>
<td> 728947</td><td> 1953</td><td> 1968</td><td> 11518</td><td> 11533</td><td> GAGAGTTCTTTCCCTG</td><td> 54</td><td> 686</td>
<td> 728948</td><td> 1954</td><td> 1969</td><td> 11519</td><td> 11534</td><td> GGAGAGTTCTTTCCCT</td><td> 32</td><td> 687</td>
<td> 728949</td><td> 1955</td><td> 1970</td><td> 11520</td><td> 11535</td><td> GGGAGAGTTCTTTCCC</td><td> 1</td><td> 688</td>
<td> 728950</td><td> 1956</td><td> 1971</td><td> 11521</td><td> 11536</td><td> TGGGAGAGTTCTTTCC</td><td> 24</td><td> 689</td>
<td> 728951</td><td> 1958</td><td> 1973</td><td> 11523</td><td> 11538</td><td> GTTGGGAGAGTTCTTT</td><td> 29</td><td> 690</td>
<td> 728952</td><td> 1970</td><td> 1985</td><td> 11535</td><td> 11550</td><td> CTAGGCCCCAGGGTTG</td><td> 35</td><td> 691</td>
<td> 728953</td><td> 1972</td><td> 1987</td><td> 11537</td><td> 11552</td><td> AGCTAGGCCCCAGGGT</td><td> 23</td><td> 692</td>
<td> 728954</td><td> 1974</td><td> 1989</td><td> 11539</td><td> 11554</td><td> ACAGCTAGGCCCCAGG</td><td> 64</td><td> 693</td>
<td> 728955</td><td> 1976</td><td> 1991</td><td> 11541</td><td> 11556</td><td> ATACAGCTAGGCCCCA</td><td> 14</td><td> 694</td>
Table 10
Inhibition of IRF5 RNA by 3-10-3 cEt gapmers targeting SEQ ID NO: 1 and 2
<td> Compound Number</td><td> SEQ ID NO: 1 Start Site</td><td> SEQ ID NO: 1 Stop Site</td><td> SEQ ID NO: 2 Start Site</td><td> SEQ ID NO: 2 Stop Site</td><td> Sequence (5' to 3')</td><td> IRF5 (% Inhibition)</td><td> SEQ ID NO</td>
<td> 665893</td><td> 1228</td><td> 1243</td><td> 10461</td><td> 10476</td><td> GCACTGACACAGGCGG</td><td> 73</td><td> 39</td>
<td> 665933</td><td> 1561</td><td> 1576</td><td> 11126</td><td> 11141</td><td> GCGGTCTTTGAGGTCT</td><td> 69</td><td> 468</td>
<td> 666013</td><td> 2215</td><td> 2230</td><td> 11780</td><td> 11795</td><td> GTTCTTGGACTCTCAA</td><td> 65</td><td> 695</td>
<td> 666015</td><td> 2228</td><td> 2243</td><td> 11793</td><td> 11808</td><td> ATTTCTGCTCCAGGTT</td><td> 54</td><td> 696</td>
<td> 729028</td><td> 2190</td><td> 2205</td><td> 11755</td><td> 11770</td><td> AGCTGCCAGCCTTGAG</td><td> 50</td><td> 697</td>
<td> 729029</td><td> 2191</td><td> 2206</td><td> 11756</td><td> 11771</td><td> TAGCTGCCAGCCTTGA</td><td> 57</td><td> 698</td>
<td> 729030</td><td> 2192</td><td> 2207</td><td> 11757</td><td> 11772</td><td> GTAGCTGCCAGCCTTG</td><td> 65</td><td> 699</td>
<td> 729031</td><td> 2194</td><td> 2209</td><td> 11759</td><td> 11774</td><td> GGGTAGCTGCCAGCCT</td><td> 41</td><td> 700</td>
<td> 729032</td><td> 2210</td><td> 2225</td><td> 11775</td><td> 11790</td><td> TGGACTCTCAAGAAGG</td><td> 55</td><td> 701</td>
<td> 729033</td><td> 2211</td><td> 2226</td><td> 11776</td><td> 11791</td><td> TTGGACTCTCAAGAAG</td><td> 37</td><td> 702</td>
<td> 729034</td><td> 2212</td><td> 2227</td><td> 11777</td><td> 11792</td><td> CTTGGACTCTCAAGAA</td><td> 38</td><td> 703</td>
<td> 729035</td><td> 2213</td><td> 2228</td><td> 11778</td><td> 11793</td><td> TCTTGGACTCTCAAGA</td><td> 0</td><td> 704</td>
<td> 729036</td><td> 2214</td><td> 2229</td><td> 11779</td><td> 11794</td><td> TTCTTGGACTCTCAAG</td><td> 55</td><td> 705</td>
<td> 729037</td><td> 2216</td><td> 2231</td><td> 11781</td><td> 11796</td><td> GGTTCTTGGACTCTCA</td><td> 80</td><td> 706</td>
<td> 729038</td><td> 2217</td><td> 2232</td><td> 11782</td><td> 11797</td><td> AGGTTCTTGGACTCTC</td><td> 85</td><td> 707</td>
<td> 729039</td><td> 2218</td><td> 2233</td><td> 11783</td><td> 11798</td><td> CAGGTTCTTGGACTCT</td><td> 74</td><td> 708</td>
<td> 729040</td><td> 2219</td><td> 2234</td><td> 11784</td><td> 11799</td><td> CCAGGTTCTTGGACTC</td><td> 67</td><td> 709</td>
<td> 729041</td><td> 2220</td><td> 2235</td><td> 11785</td><td> 11800</td><td> TCCAGGTTCTTGGACT</td><td> 39</td><td> 710</td>
<td> 729042</td><td> 2222</td><td> 2237</td><td> 11787</td><td> 11802</td><td> GCTCCAGGTTCTTGGA</td><td> 11</td><td> 711</td>
<td> 729043</td><td> 2223</td><td> 2238</td><td> 11788</td><td> 11803</td><td> TGCTCCAGGTTCTTGG</td><td> 44</td><td> 712</td>
<td> 729044</td><td> 2224</td><td> 2239</td><td> 11789</td><td> 11804</td><td> CTGCTCCAGGTTCTTG</td><td> 62</td><td> 713</td>
<td> 729045</td><td> 2225</td><td> 2240</td><td> 11790</td><td> 11805</td><td> TCTGCTCCAGGTTCTT</td><td> 60</td><td> 714</td>
<td> 729046</td><td> 2226</td><td> 2241</td><td> 11791</td><td> 11806</td><td> TTCTGCTCCAGGTTCT</td><td> 54</td><td> 715</td>
<td> 729047</td><td> 2227</td><td> 2242</td><td> 11792</td><td> 11807</td><td> TTTCTGCTCCAGGTTC</td><td> 63</td><td> 716</td>
<td> 729048</td><td> 2229</td><td> 2244</td><td> 11794</td><td> 11809</td><td> TATTTCTGCTCCAGGT</td><td> 63</td><td> 717</td>
<td> 729049</td><td> 2230</td><td> 2245</td><td> 11795</td><td> 11810</td><td> TTATTTCTGCTCCAGG</td><td> 76</td><td> 718</td>
<td> 729050</td><td> 2231</td><td> 2246</td><td> 11796</td><td> 11811</td><td> ATTATTTCTGCTCCAG</td><td> 76</td><td> 719</td>
<td> 729051</td><td> 2232</td><td> 2247</td><td> 11797</td><td> 11812</td><td> AATTATTTCTGCTCCA</td><td> 58</td><td> 720</td>
<td> 729052</td><td> 2260</td><td> 2275</td><td> 11825</td><td> 11840</td><td> AACATTCATTAATCCA</td><td> 55</td><td> 721</td>
<td> 729053</td><td> 2278</td><td> 2293</td><td> 11843</td><td> 11858</td><td> ACAGCTGAGTCTGTTT</td><td> 26</td><td> 722</td>
<td> 729055</td><td> 2300</td><td> 2315</td><td> 11865</td><td> 11880</td><td> TGGTAGTAGTAAAAGG</td><td> 24</td><td> 723</td>
<td> 729060</td><td> 2310</td><td> 2325</td><td> 11875</td><td> 11890</td><td> TGGGAGCAACTGGTAG</td><td> 33</td><td> 724</td>
<td> 729064</td><td> 2322</td><td> 2337</td><td> 11887</td><td> 11902</td><td> GGTGGAGCAGCATGGG</td><td> 14</td><td> 725</td>
<td> 729067</td><td> 2336</td><td> 2351</td><td> 11901</td><td> 11916</td><td> CCGAAACAGGGCCTGG</td><td> 33</td><td> 726</td>
<td> 729072</td><td> 2346</td><td> 2361</td><td> 11911</td><td> 11926</td><td> CAGTTGGCATCCGAAA</td><td> 8</td><td> 727</td>
<td> 729077</td><td> 2385</td><td> 2400</td><td> 11950</td><td> 11965</td><td> AATGGTCGCAAGCTGG</td><td> 26</td><td> 728</td>
<td> 729082</td><td> 2395</td><td> 2410</td><td> 11960</td><td> 11975</td><td> TCCCAGTGCCAATGGT</td><td> 5</td><td> 729</td>
<td> 729086</td><td> 2417</td><td> 2432</td><td> 11982</td><td> 11997</td><td> CATCAGCCCAGAAGCC</td><td> 12</td><td> 730</td>
<td> 729090</td><td> 2427</td><td> 2442</td><td> 11992</td><td> 12007</td><td> CCAACTGACCCATCAG</td><td> 8</td><td> 731</td>
<td> 729095</td><td> 2437</td><td> 2452</td><td> 12002</td><td> 12017</td><td> TTATGAAGGCCCAACT</td><td> 0</td><td> 732</td>
<td> 729100</td><td> 2447</td><td> 2462</td><td> 12012</td><td> 12027</td><td> AGGTGAGTGTTTATGA</td><td> 33</td><td> 733</td>
<td> 729105</td><td> 2457</td><td> 2472</td><td> 12022</td><td> 12037</td><td> AAAGCCAGCCAGGTGA</td><td> 30</td><td> 734</td>
<td> 729106</td><td> 2486</td><td> 2501</td><td> 12051</td><td> 12066</td><td> TTGCTTCAGCCAGCTT</td><td> 15</td><td> 735</td>
<td> 729110</td><td> 2496</td><td> 2511</td><td> 12061</td><td> 12076</td><td> TTCCACACCCTTGCTT</td><td> 11</td><td> 736</td>
<td> 729112</td><td> 2515</td><td> 2530</td><td> 12080</td><td> 12095</td><td> ACTGTGCACACATTTA</td><td> 53</td><td> 737</td>
<td> 729116</td><td> 2525</td><td> 2540</td><td> 12090</td><td> 12105</td><td> AGTTTTCCAGACTGTG</td><td> 28</td><td> 738</td>
<td> 729120</td><td> 2536</td><td> 2551</td><td> 12101</td><td> 12116</td><td> CTGATTCTGACAGTTT</td><td> 0</td><td> 739</td>
<td> 729123</td><td> 2547</td><td> 2562</td><td> 12112</td><td> 12127</td><td> TTATGGGAAAACTGAT</td><td> 0</td><td> 740</td>
<td> 729125</td><td> 2557</td><td> 2572</td><td> 12122</td><td> 12137</td><td> GCCCACCCTTTTATGG</td><td> 0</td><td> 741</td>
<td> 729129</td><td> 2567</td><td> 2582</td><td> 12132</td><td> 12147</td><td> TGCAATGCTAGCCCAC</td><td> 54</td><td> 742</td>
<td> 729134</td><td> 2577</td><td> 2592</td><td> 12142</td><td> 12157</td><td> CAAATGCAGCTGCAAT</td><td> 27</td><td> 743</td>
<td> 729139</td><td> 2588</td><td> 2603</td><td> 12153</td><td> 12168</td><td> TTGAATGGTCCCAAAT</td><td> 22</td><td> 744</td>
<td> 729144</td><td> 2599</td><td> 2614</td><td> 12164</td><td> 12179</td><td> GAGTGACAGATTTGAA</td><td> 55</td><td> 745</td>
<td> 729146</td><td> 2620</td><td> 2635</td><td> 12185</td><td> 12200</td><td> AGCACAGGAATATACA</td><td> 36</td><td> 746</td>
<td> 729150</td><td> 2637</td><td> 2652</td><td> 12202</td><td> 12217</td><td> GCCCTGATATATTTAA</td><td> 0</td><td> 747</td>
<td> 729155</td><td> 2647</td><td> 2662</td><td> 12212</td><td> 12227</td><td> TACATGCACTGCCCTG</td><td> 31</td><td> 748</td>
<td> 729160</td><td> 2657</td><td> 2672</td><td> 12222</td><td> 12237</td><td> CAGGATGATTTACATG</td><td> 5</td><td> 749</td>
<td> 729164</td><td> 2703</td><td> 2718</td><td> 12268</td><td> 12283</td><td> ACTGTCCCCACCTCGG</td><td> 10</td><td> 750</td>
<td> 729165</td><td> 2720</td><td> 2735</td><td> 12285</td><td> 12300</td><td> ACTAAGAGAACTCACT</td><td> 31</td><td> 751</td>
<td> 729167</td><td> 2747</td><td> 2762</td><td> 12312</td><td> 12327</td><td> GGCTCTTTAACAACCA</td><td> 20</td><td> 752</td>
<td> 729170</td><td> 2761</td><td> 2776</td><td> 12326</td><td> 12341</td><td> GCGGGTAGGTGCCAGG</td><td> 40</td><td> 753</td>
<td> 729175</td><td> 2771</td><td> 2786</td><td> 12336</td><td> 12351</td><td> TGAAGTGAGAGCGGGT</td><td> 45</td><td> 754</td>
<td> 729180</td><td> 2789</td><td> 2804</td><td> 12354</td><td> 12369</td><td> GTGCAGAGATGACACA</td><td> 0</td><td> 755</td>
<td> 729182</td><td> 2800</td><td> 2815</td><td> 12365</td><td> 12380</td><td> TGGGCTGGAGTGTGCA</td><td> 30</td><td> 756</td>
<td> 729185</td><td> 2820</td><td> 2835</td><td> 12385</td><td> 12400</td><td> CAATGGCTGAAGGCAG</td><td> 14</td><td> 757</td>
<td> 729190</td><td> 2876</td><td> 2891</td><td> 12441</td><td> 12456</td><td> GCTGGGCATCAAGATT</td><td> 7</td><td> 758</td>
<td> 729194</td><td> 2885</td><td> 2900</td><td> 12450</td><td> 12465</td><td> GTTCTGATGGCTGGGC</td><td> 50</td><td> 759</td>
<td> 729251</td><td> N/A</td><td> N/A</td><td> 176</td><td> 191</td><td> CTGGAATGGCAAAACT</td><td> 12</td><td> 760</td>
<td> 729252</td><td> N/A</td><td> N/A</td><td> 197</td><td> 212</td><td> GCCACTGGCTCTTTTG</td><td> 0</td><td> 761</td>
<td> 729253</td><td> N/A</td><td> N/A</td><td> 207</td><td> 222</td><td> CCCTAGACTGGCCACT</td><td> 1</td><td> 762</td>
<td> 729254</td><td> N/A</td><td> N/A</td><td> 218</td><td> 233</td><td> ACGGCGCGGTGCCCTA</td><td> 10</td><td> 763</td>
<td> 729255</td><td> N/A</td><td> N/A</td><td> 257</td><td> 272</td><td> AGCCTCGGGCCAGGCC</td><td> 12</td><td> 764</td>
<td> 729256</td><td> N/A</td><td> N/A</td><td> 267</td><td> 282</td><td> ATCCGGGCTGAGCCTC</td><td> 8</td><td> 765</td>
<td> 729257</td><td> N/A</td><td> N/A</td><td> 292</td><td> 307</td><td> CCCCGCACTGACCTGG</td><td> 43</td><td> 766</td>
<td> 729258</td><td> N/A</td><td> N/A</td><td> 302</td><td> 317</td><td> CCACTCCGGGCCCCGC</td><td> 0</td><td> 767</td>
<td> 729259</td><td> N/A</td><td> N/A</td><td> 312</td><td> 327</td><td> CCCCGCGAATCCACTC</td><td> 0</td><td> 768</td>
<td> 729260</td><td> N/A</td><td> N/A</td><td> 364</td><td> 379</td><td> CGCCCCTGGGCAGCTG</td><td> 0</td><td> 769</td>
<td> 729635</td><td> N/A</td><td> N/A</td><td> 228</td><td> 243</td><td> GAGATGCCAGACGGCG</td><td> 0</td><td> 770</td>
<td> 729636</td><td> N/A</td><td> N/A</td><td> 344</td><td> 359</td><td> TGAGCTCCGGGCGCGG</td><td> 5</td><td> 771</td>
Table 11
Inhibition of IRF5 RNA by 3-10-3 cEt gapmers targeting SEQ ID NO: 1 and 2
<td> Compound Number</td><td> SEQ ID NO: 1 Start Site</td><td> SEQ ID NO: 1 Stop Site</td><td> SEQ ID NO: 2 Start Site</td><td> SEQ ID NO: 2 Stop Site</td><td> Sequence (5' to 3')</td><td> IRF5 (% Inhibition)</td><td> SEQ ID NO</td>
<td> 665893</td><td> 1228</td><td> 1243</td><td> 10461</td><td> 10476</td><td> GCACTGACACAGGCGG</td><td> 74</td><td> 39</td>
<td> 665933</td><td> 1561</td><td> 1576</td><td> 11126</td><td> 11141</td><td> GCGGTCTTTGAGGTCT</td><td> 57</td><td> 468</td>
<td> 729261</td><td> N/A</td><td> N/A</td><td> 502</td><td> 517</td><td> GACCCACCTGTCTGCG</td><td> 7</td><td> 772</td>
<td> 729262</td><td> N/A</td><td> N/A</td><td> 512</td><td> 527</td><td> CGGCGGCCGGGACCCA</td><td> 18</td><td> 773</td>
<td> 729263</td><td> N/A</td><td> N/A</td><td> 532</td><td> 547</td><td> CGGACGCAGAGAGGAG</td><td> 20</td><td> 774</td>
<td> 729264</td><td> N/A</td><td> N/A</td><td> 561</td><td> 576</td><td> CTCCCGCCACCCTCGG</td><td> 9</td><td> 775</td>
<td> 729265</td><td> N/A</td><td> N/A</td><td> 571</td><td> 586</td><td> GCCGGCACCGCTCCCG</td><td> 0</td><td> 776</td>
<td> 729266</td><td> N/A</td><td> N/A</td><td> 594</td><td> 609</td><td> TAGGCCTAGACTTGGG</td><td> 26</td><td> 777</td>
<td> 729267</td><td> N/A</td><td> N/A</td><td> 635</td><td> 650</td><td> TCCCGCCGCCCGCAGG</td><td> 10</td><td> 778</td>
<td> 729268</td><td> N/A</td><td> N/A</td><td> 645</td><td> 660</td><td> CCAGTCTTCATCCCGC</td><td> 33</td><td> 779</td>
<td> 729269</td><td> N/A</td><td> N/A</td><td> 656</td><td> 671</td><td> CCCGCCCTACTCCAGT</td><td> 26</td><td> 780</td>
<td> 729270</td><td> N/A</td><td> N/A</td><td> 686</td><td> 701</td><td> CTCGCTTTCCAGGCGC</td><td> 4</td><td> 781</td>
<td> 729271</td><td> N/A</td><td> N/A</td><td> 696</td><td> 711</td><td> CCCCCCCGAGCTCGCT</td><td> 8</td><td> 782</td>
<td> 729272</td><td> N/A</td><td> N/A</td><td> 706</td><td> 721</td><td> GCTGTAGGCACCCCCC</td><td> 19</td><td> 783</td>
<td> 729273</td><td> N/A</td><td> N/A</td><td> 736</td><td> 751</td><td> TGGAAGTCCCAGGCCG</td><td> 21</td><td> 784</td>
<td> 729274</td><td> N/A</td><td> N/A</td><td> 767</td><td> 782</td><td> CCCCAAACCGATCGGG</td><td> 0</td><td> 785</td>
<td> 729275</td><td> N/A</td><td> N/A</td><td> 801</td><td> 816</td><td> CCGCCTGGGTCACTGG</td><td> 11</td><td> 786</td>
<td> 729276</td><td> N/A</td><td> N/A</td><td> 811</td><td> 826</td><td> GCCCACTCCGCCGCCT</td><td> 0</td><td> 787</td>
<td> 729277</td><td> N/A</td><td> N/A</td><td> 866</td><td> 881</td><td> CTGGGCGATGGCGAGG</td><td> 10</td><td> 788</td>
<td> 729278</td><td> N/A</td><td> N/A</td><td> 876</td><td> 891</td><td> AACCCCCATTCTGGGC</td><td> 6</td><td> 789</td>
<td> 729279</td><td> N/A</td><td> N/A</td><td> 886</td><td> 901</td><td> GGCTCCCGGGAACCCC</td><td> 11</td><td> 790</td>
<td> 729280</td><td> N/A</td><td> N/A</td><td> 911</td><td> 926</td><td> TGTGGTCCAAGCCAGC</td><td> 29</td><td> 791</td>
<td> 729281</td><td> N/A</td><td> N/A</td><td> 931</td><td> 946</td><td> AGGATCGGGCCTCGCT</td><td> 30</td><td> 792</td>
<td> 729282</td><td> N/A</td><td> N/A</td><td> 941</td><td> 956</td><td> ATCGAAAGTAAGGATC</td><td> 17</td><td> 793</td>
<td> 729283</td><td> N/A</td><td> N/A</td><td> 957</td><td> 972</td><td> GAGCAAGGGCGAGTGC</td><td> 29</td><td> 794</td>
<td> 729284</td><td> N/A</td><td> N/A</td><td> 967</td><td> 982</td><td> GGCCCGGTAAGAGCAA</td><td> 6</td><td> 795</td>
<td> 729285</td><td> N/A</td><td> N/A</td><td> 986</td><td> 1001</td><td> TTTCCGAAAGGGTGAG</td><td> 32</td><td> 796</td>
<td> 729286</td><td> N/A</td><td> N/A</td><td> 1028</td><td> 1043</td><td> GCCTGAAGATCCCGGG</td><td> 14</td><td> 797</td>
<td> 729287</td><td> N/A</td><td> N/A</td><td> 1038</td><td> 1053</td><td> CCTGCCATTGGCCTGA</td><td> 14</td><td> 798</td>
<td> 729288</td><td> N/A</td><td> N/A</td><td> 1057</td><td> 1072</td><td> CCCAAACTCTTGCACA</td><td> 25</td><td> 799</td>
<td> 729289</td><td> N/A</td><td> N/A</td><td> 1074</td><td> 1089</td><td> ACCTGACACCATCTTC</td><td> 9</td><td> 800</td>
<td> 729290</td><td> N/A</td><td> N/A</td><td> 1085</td><td> 1100</td><td> ACGCAGCCTCTACCTG</td><td> 0</td><td> 801</td>
<td> 729291</td><td> N/A</td><td> N/A</td><td> 1096</td><td> 1111</td><td> CGAGCCCAGGGACGCA</td><td> 16</td><td> 802</td>
<td> 729292</td><td> N/A</td><td> N/A</td><td> 1107</td><td> 1122</td><td> ATTCCCGGCCGCGAGC</td><td> 19</td><td> 803</td>
<td> 729293</td><td> N/A</td><td> N/A</td><td> 1117</td><td> 1132</td><td> AGAGTCTGCCATTCCC</td><td> 44</td><td> 804</td>
<td> 729294</td><td> N/A</td><td> N/A</td><td> 1157</td><td> 1172</td><td> GAACTATTGCGCCCCA</td><td> 35</td><td> 805</td>
<td> 729295</td><td> N/A</td><td> N/A</td><td> 1167</td><td> 1182</td><td> ACCAGCCCAGGAACTA</td><td> 15</td><td> 806</td>
<td> 729296</td><td> N/A</td><td> N/A</td><td> 1177</td><td> 1192</td><td> ACCTGAGGAAACCAGC</td><td> 15</td><td> 807</td>
<td> 729297</td><td> N/A</td><td> N/A</td><td> 1190</td><td> 1205</td><td> GTTCTGGGACAGGACC</td><td> 19</td><td> 808</td>
<td> 729298</td><td> N/A</td><td> N/A</td><td> 1213</td><td> 1228</td><td> CCTCTTCATTGTTGCC</td><td> 42</td><td> 809</td>
<td> 729299</td><td> N/A</td><td> N/A</td><td> 1244</td><td> 1259</td><td> CATGCTAGCCTCACTT</td><td> 23</td><td> 810</td>
<td> 729300</td><td> N/A</td><td> N/A</td><td> 1268</td><td> 1283</td><td> AACCATCTCCCCACGC</td><td> 21</td><td> 811</td>
<td> 729301</td><td> N/A</td><td> N/A</td><td> 1278</td><td> 1293</td><td> GTCCGGAGACAACCAT</td><td> 13</td><td> 812</td>
<td> 729302</td><td> N/A</td><td> N/A</td><td> 1308</td><td> 1323</td><td> TCCCAGGTACCCGCTC</td><td> 7</td><td> 813</td>
<td> 729303</td><td> N/A</td><td> N/A</td><td> 1330</td><td> 1345</td><td> AGTCCCCCACTCCAGC</td><td> 23</td><td> 814</td>
<td> 729304</td><td> N/A</td><td> N/A</td><td> 1342</td><td> 1357</td><td> CGAGGCTGGGAAAGTC</td><td> 18</td><td> 815</td>
<td> 729305</td><td> N/A</td><td> N/A</td><td> 1370</td><td> 1385</td><td> CCTCGCCCTGCTGTGT</td><td> 18</td><td> 816</td>
<td> 729306</td><td> N/A</td><td> N/A</td><td> 1380</td><td> 1395</td><td> GCACCCCGGTCCTCGC</td><td> 27</td><td> 817</td>
<td> 729307</td><td> N/A</td><td> N/A</td><td> 1557</td><td> 1572</td><td> ATTCTGGGCCCTCGAG</td><td> 3</td><td> 818</td>
<td> 729308</td><td> N/A</td><td> N/A</td><td> 1579</td><td> 1594</td><td> CTGGTTCTGGTCACTT</td><td> 41</td><td> 819</td>
<td> 729309</td><td> N/A</td><td> N/A</td><td> 1591</td><td> 1606</td><td> GCCGAGCCCTCTCTGG</td><td> 13</td><td> 820</td>
<td> 729310</td><td> N/A</td><td> N/A</td><td> 1601</td><td> 1616</td><td> CATCGATACAGCCGAG</td><td> 42</td><td> 821</td>
<td> 729311</td><td> N/A</td><td> N/A</td><td> 1638</td><td> 1653</td><td> CTTGCCAGAGGGCCTC</td><td> 40</td><td> 822</td>
<td> 729312</td><td> N/A</td><td> N/A</td><td> 1676</td><td> 1691</td><td> CCCCATAACTACTGGG</td><td> 20</td><td> 823</td>
<td> 729313</td><td> N/A</td><td> N/A</td><td> 1702</td><td> 1717</td><td> GAACCCCTCAGCCCCA</td><td> 8</td><td> 824</td>
<td> 729314</td><td> N/A</td><td> N/A</td><td> 1712</td><td> 1727</td><td> TTGACTCTTGGAACCC</td><td> 40</td><td> 825</td>
<td> 729315</td><td> N/A</td><td> N/A</td><td> 1722</td><td> 1737</td><td> AGTGCTTCCCTTGACT</td><td> 20</td><td> 826</td>
<td> 729316</td><td> N/A</td><td> N/A</td><td> 1748</td><td> 1763</td><td> CTTTAGATAAAAAGGG</td><td> 12</td><td> 827</td>
<td> 729317</td><td> N/A</td><td> N/A</td><td> 1758</td><td> 1773</td><td> AAAGTAGGGCCTTTAG</td><td> 27</td><td> 828</td>
<td> 729318</td><td> N/A</td><td> N/A</td><td> 1833</td><td> 1848</td><td> GCCCAGAAAGAAGCTT</td><td> 5</td><td> 829</td>
<td> 729319</td><td> N/A</td><td> N/A</td><td> 1867</td><td> 1882</td><td> GGTCCAGACAGGCTGA</td><td> 15</td><td> 830</td>
<td> 729320</td><td> N/A</td><td> N/A</td><td> 1909</td><td> 1924</td><td> CTCCGGGTCAGCTGCC</td><td> 25</td><td> 831</td>
<td> 729321</td><td> N/A</td><td> N/A</td><td> 1919</td><td> 1934</td><td> AATCCCACCCCTCCGG</td><td> 8</td><td> 832</td>
<td> 729322</td><td> N/A</td><td> N/A</td><td> 1942</td><td> 1957</td><td> CCCTGTACAGGCCCTG</td><td> 1</td><td> 833</td>
<td> 729323</td><td> N/A</td><td> N/A</td><td> 1992</td><td> 2007</td><td> ACATGTCTCCTTGCAA</td><td> 6</td><td> 834</td>
<td> 729324</td><td> N/A</td><td> N/A</td><td> 2002</td><td> 2017</td><td> GGTCTGGGTCACATGT</td><td> 33</td><td> 835</td>
<td> 729325</td><td> N/A</td><td> N/A</td><td> 2036</td><td> 2051</td><td> GCCAGACAGCAGGCGC</td><td> 11</td><td> 836</td>
<td> 729326</td><td> N/A</td><td> N/A</td><td> 2047</td><td> 2062</td><td> TAGTAAGAGTGGCCAG</td><td> 16</td><td> 837</td>
<td> 729327</td><td> N/A</td><td> N/A</td><td> 2058</td><td> 2073</td><td> CACAGCAGTCCTAGTA</td><td> 9</td><td> 838</td>
<td> 729328</td><td> N/A</td><td> N/A</td><td> 2068</td><td> 2083</td><td> GAGGAAGTGCCACAGC</td><td> 17</td><td> 839</td>
<td> 729329</td><td> N/A</td><td> N/A</td><td> 2100</td><td> 2115</td><td> TGCAATTCATGGGCAC</td><td> 18</td><td> 840</td>
<td> 729330</td><td> N/A</td><td> N/A</td><td> 2110</td><td> 2125</td><td> ACCCAGGAGCTGCAAT</td><td> 4</td><td> 841</td>
<td> 729331</td><td> N/A</td><td> N/A</td><td> 2129</td><td> 2144</td><td> AGACAGTGCCCCCACC</td><td> 5</td><td> 842</td>
<td> 729332</td><td> N/A</td><td> N/A</td><td> 2170</td><td> 2185</td><td> TAAGCCCACAGCTCAC</td><td> 0</td><td> 843</td>
<td> 729333</td><td> N/A</td><td> N/A</td><td> 2187</td><td> 2202</td><td> GACCTGCTGAGGTGGG</td><td> 15</td><td> 844</td>
<td> 729637</td><td> N/A</td><td> N/A</td><td> 716</td><td> 731</td><td> GGCGCACCCTGCTGTA</td><td> 17</td><td> 845</td>
<td> 729638</td><td> N/A</td><td> N/A</td><td> 1234</td><td> 1249</td><td> TCACTTTTCCTCCACG</td><td> 38</td><td> 846</td>
<td> 729639</td><td> N/A</td><td> N/A</td><td> 1452</td><td> 1467</td><td> GGGCCAGCCCGCGGAG</td><td> 15</td><td> 847</td>
<td> 729640</td><td> N/A</td><td> N/A</td><td> 1611</td><td> 1626</td><td> CAGTTTCCTACATCGA</td><td> 22</td><td> 848</td>
Table 12
Inhibition of IRF5 RNA by 3-10-3 cEt gapmers targeting SEQ ID NO: 1 and 2
<td> Compound Number</td><td> SEQ ID NO: 1 Start Site</td><td> SEQ ID NO: 1 Stop Site</td><td> SEQ ID NO: 2 Start Site</td><td> SEQ ID NO: 2 Stop Site</td><td> Sequence (5' to 3')</td><td> IRF5 (% Inhibition)</td><td> SEQ ID NO</td>
<td> 665893</td><td> 1228</td><td> 1243</td><td> 10461</td><td> 10476</td><td> GCACTGACACAGGCGG</td><td> 73</td><td> 39</td>
<td> 665933</td><td> 1561</td><td> 1576</td><td> 11126</td><td> 11141</td><td> GCGGTCTTTGAGGTCT</td><td> 63</td><td> 468</td>
<td> 729195</td><td> N/A</td><td> N/A</td><td> 3775</td><td> 3790</td><td> TCGGGTAGCACTTAGG</td><td> 53</td><td> 849</td>
<td> 729334</td><td> N/A</td><td> N/A</td><td> 2204</td><td> 2219</td><td> AGTGGGCAGCCCTAGA</td><td> 12</td><td> 850</td>
<td> 729335</td><td> N/A</td><td> N/A</td><td> 2224</td><td> 2239</td><td> TGTGAGGCAGCGAAGC</td><td> 32</td><td> 851</td>
<td> 729336</td><td> N/A</td><td> N/A</td><td> 2234</td><td> 2249</td><td> CCTACAATTGTGTGAG</td><td> 10</td><td> 852</td>
<td> 729337</td><td> N/A</td><td> N/A</td><td> 2258</td><td> 2273</td><td> GAAATCCAACAGCCTG</td><td> 25</td><td> 853</td>
<td> 729338</td><td> N/A</td><td> N/A</td><td> 2274</td><td> 2289</td><td> AGCCCCGGAAGGTGGG</td><td> 11</td><td> 854</td>
<td> 729339</td><td> N/A</td><td> N/A</td><td> 2284</td><td> 2299</td><td> AATGGACCTGAGCCCC</td><td> 25</td><td> 855</td>
<td> 729340</td><td> N/A</td><td> N/A</td><td> 2304</td><td> 2319</td><td> TGGAGCCCTAGACCTA</td><td> 13</td><td> 856</td>
<td> 729341</td><td> N/A</td><td> N/A</td><td> 2314</td><td> 2329</td><td> GTGAAATGTATGGAGC</td><td> 20</td><td> 857</td>
<td> 729342</td><td> N/A</td><td> N/A</td><td> 2324</td><td> 2339</td><td> GAGTCTCTGGGTGAAA</td><td> 16</td><td> 858</td>
<td> 729343</td><td> N/A</td><td> N/A</td><td> 2334</td><td> 2349</td><td> CCAGGCTCCGGAGTCT</td><td> 0</td><td> 859</td>
<td> 729344</td><td> N/A</td><td> N/A</td><td> 2365</td><td> 2380</td><td> TGGAAGTTCGGTGTCA</td><td> 27</td><td> 860</td>
<td> 729345</td><td> N/A</td><td> N/A</td><td> 2376</td><td> 2391</td><td> GCCCATGACTTTGGAA</td><td> 8</td><td> 861</td>
<td> 729346</td><td> N/A</td><td> N/A</td><td> 2386</td><td> 2401</td><td> CCCAATCAAGGCCCAT</td><td> 16</td><td> 862</td>
<td> 729347</td><td> N/A</td><td> N/A</td><td> 2405</td><td> 2420</td><td> TAGGTCTAATTCAGAC</td><td> 6</td><td> 863</td>
<td> 729348</td><td> N/A</td><td> N/A</td><td> 2415</td><td> 2430</td><td> AGAAAAGGGCTAGGTC</td><td> 0</td><td> 864</td>
<td> 729349</td><td> N/A</td><td> N/A</td><td> 2444</td><td> 2459</td><td> TCCATCCTCCTAGAAG</td><td> 0</td><td> 865</td>
<td> 729350</td><td> N/A</td><td> N/A</td><td> 2454</td><td> 2469</td><td> CCGAACAGCATCCATC</td><td> 3</td><td> 866</td>
<td> 729351</td><td> N/A</td><td> N/A</td><td> 2464</td><td> 2479</td><td> GAGCTCTAACCCGAAC</td><td> 0</td><td> 867</td>
<td> 729352</td><td> N/A</td><td> N/A</td><td> 2507</td><td> 2522</td><td> AGGGACTCAGCCTCAA</td><td> 18</td><td> 868</td>
<td> 729353</td><td> N/A</td><td> N/A</td><td> 2517</td><td> 2532</td><td> ATGCCACAGAAGGGAC</td><td> 15</td><td> 869</td>
<td> 729354</td><td> N/A</td><td> N/A</td><td> 2527</td><td> 2542</td><td> TCTGTCCACCATGCCA</td><td> 6</td><td> 870</td>
<td> 729355</td><td> N/A</td><td> N/A</td><td> 2538</td><td> 2553</td><td> ATGAGCGAGAGTCTGT</td><td> 25</td><td> 871</td>
<td> 729356</td><td> N/A</td><td> N/A</td><td> 2615</td><td> 2630</td><td> GTGTCAGAGGGCCGCG</td><td> 28</td><td> 872</td>
<td> 729357</td><td> N/A</td><td> N/A</td><td> 2625</td><td> 2640</td><td> TCCGACCTCAGTGTCA</td><td> 20</td><td> 873</td>
<td> 729358</td><td> N/A</td><td> N/A</td><td> 2635</td><td> 2650</td><td> AAATGATAACTCCGAC</td><td> 27</td><td> 874</td>
<td> 729359</td><td> N/A</td><td> N/A</td><td> 2658</td><td> 2673</td><td> GTTTAATACAGAGCAA</td><td> 36</td><td> 875</td>
<td> 729360</td><td> N/A</td><td> N/A</td><td> 2668</td><td> 2683</td><td> CAACACGGCTGTTTAA</td><td> 0</td><td> 876</td>
<td> 729361</td><td> N/A</td><td> N/A</td><td> 2695</td><td> 2710</td><td> CTGTCAGTCCAGCAGT</td><td> 29</td><td> 877</td>
<td> 729362</td><td> N/A</td><td> N/A</td><td> 2708</td><td> 2723</td><td> TGCCTGCCCCCTACTG</td><td> 5</td><td> 878</td>
<td> 729363</td><td> N/A</td><td> N/A</td><td> 2755</td><td> 2770</td><td> GAGGCCGTGCAGGCGC</td><td> 23</td><td> 879</td>
<td> 729364</td><td> N/A</td><td> N/A</td><td> 2768</td><td> 2783</td><td> GACCCCCTGGGCTGAG</td><td> 17</td><td> 880</td>
<td> 729365</td><td> N/A</td><td> N/A</td><td> 2778</td><td> 2793</td><td> CTTCCCTAATGACCCC</td><td> 19</td><td> 881</td>
<td> 729366</td><td> N/A</td><td> N/A</td><td> 2799</td><td> 2814</td><td> TCTGCACAGAATCGGG</td><td> 18</td><td> 882</td>
<td> 729367</td><td> N/A</td><td> N/A</td><td> 2823</td><td> 2838</td><td> CAAGGGTGGACAGAGG</td><td> 14</td><td> 883</td>
<td> 729368</td><td> N/A</td><td> N/A</td><td> 2833</td><td> 2848</td><td> TCTGGCCGAGCAAGGG</td><td> 24</td><td> 884</td>
<td> 729369</td><td> N/A</td><td> N/A</td><td> 2843</td><td> 2858</td><td> GGCACACAATTCTGGC</td><td> 3</td><td> 885</td>
<td> 729370</td><td> N/A</td><td> N/A</td><td> 2874</td><td> 2889</td><td> GCCCTAGAATAGAGGG</td><td> 9</td><td> 886</td>
<td> 729371</td><td> N/A</td><td> N/A</td><td> 2884</td><td> 2899</td><td> AGAGGCCTTGGCCCTA</td><td> 5</td><td> 887</td>
<td> 729372</td><td> N/A</td><td> N/A</td><td> 2911</td><td> 2926</td><td> ACCCATAGTTGTATCT</td><td> 13</td><td> 888</td>
<td> 729373</td><td> N/A</td><td> N/A</td><td> 2935</td><td> 2950</td><td> GGTTTATAACATGGGT</td><td> 11</td><td> 889</td>
<td> 729374</td><td> N/A</td><td> N/A</td><td> 2974</td><td> 2989</td><td> GCACCCCAAACTTGCA</td><td> 11</td><td> 890</td>
<td> 729375</td><td> N/A</td><td> N/A</td><td> 2984</td><td> 2999</td><td> GCTGTTCCCCGCACCC</td><td> 17</td><td> 891</td>
<td> 729376</td><td> N/A</td><td> N/A</td><td> 2995</td><td> 3010</td><td> TCCCACCCAGAGCTGT</td><td> 7</td><td> 892</td>
<td> 729377</td><td> N/A</td><td> N/A</td><td> 3016</td><td> 3031</td><td> CCCCAGACCAAATTTC</td><td> 0</td><td> 893</td>
<td> 729378</td><td> N/A</td><td> N/A</td><td> 3026</td><td> 3041</td><td> CGAGTGGGTCCCCCAG</td><td> 17</td><td> 894</td>
<td> 729379</td><td> N/A</td><td> N/A</td><td> 3052</td><td> 3067</td><td> ACTCACTGTGGGCTGA</td><td> 22</td><td> 895</td>
<td> 729380</td><td> N/A</td><td> N/A</td><td> 3080</td><td> 3095</td><td> GGCTAGACCGGGACAA</td><td> 29</td><td> 896</td>
<td> 729381</td><td> N/A</td><td> N/A</td><td> 3090</td><td> 3105</td><td> AAACGAAAGTGGCTAG</td><td> 11</td><td> 897</td>
<td> 729382</td><td> N/A</td><td> N/A</td><td> 3108</td><td> 3123</td><td> TCCACCCGGCCCCAGG</td><td> 3</td><td> 898</td>
<td> 729383</td><td> N/A</td><td> N/A</td><td> 3329</td><td> 3344</td><td> CCCAGTACCTTTTGGG</td><td> 0</td><td> 899</td>
<td> 729384</td><td> N/A</td><td> N/A</td><td> 3339</td><td> 3354</td><td> AAATTCCCTGCCCAGT</td><td> 6</td><td> 900</td>
<td> 729385</td><td> N/A</td><td> N/A</td><td> 3372</td><td> 3387</td><td> TGGCCTTGCAGCATGG</td><td> 27</td><td> 901</td>
<td> 729386</td><td> N/A</td><td> N/A</td><td> 3386</td><td> 3401</td><td> GTCTGGGCCTGCTTTG</td><td> 23</td><td> 902</td>
<td> 729387</td><td> N/A</td><td> N/A</td><td> 3396</td><td> 3411</td><td> AACTCCCTGTGTCTGG</td><td> 18</td><td> 903</td>
<td> 729388</td><td> N/A</td><td> N/A</td><td> 3447</td><td> 3462</td><td> CATCAGAAGTGAATGT</td><td> 8</td><td> 904</td>
<td> 729389</td><td> N/A</td><td> N/A</td><td> 3458</td><td> 3473</td><td> ACAGCACAGCCCATCA</td><td> 14</td><td> 905</td>
<td> 729390</td><td> N/A</td><td> N/A</td><td> 3468</td><td> 3483</td><td> GGGTCATTACACAGCA</td><td> 23</td><td> 906</td>
<td> 729391</td><td> N/A</td><td> N/A</td><td> 3509</td><td> 3524</td><td> GCCCTTCACTTGAGAC</td><td> 13</td><td> 907</td>
<td> 729392</td><td> N/A</td><td> N/A</td><td> 3519</td><td> 3534</td><td> CATGCCCTTGGCCCTT</td><td> 8</td><td> 908</td>
<td> 729393</td><td> N/A</td><td> N/A</td><td> 3530</td><td> 3545</td><td> CTCCCCTTACCCATGC</td><td> 0</td><td> 909</td>
<td> 729394</td><td> N/A</td><td> N/A</td><td> 3556</td><td> 3571</td><td> GTCCTGAGTCCCCTTC</td><td> 0</td><td> 910</td>
<td> 729395</td><td> N/A</td><td> N/A</td><td> 3567</td><td> 3582</td><td> AACTCTCCACAGTCCT</td><td> 10</td><td> 911</td>
<td> 729396</td><td> N/A</td><td> N/A</td><td> 3631</td><td> 3646</td><td> AGGCCAGAGGGACCCT</td><td> 0</td><td> 912</td>
<td> 729397</td><td> N/A</td><td> N/A</td><td> 3648</td><td> 3663</td><td> ACTGCCTCCCTGGAGT</td><td> 0</td><td> 913</td>
<td> 729398</td><td> N/A</td><td> N/A</td><td> 3695</td><td> 3710</td><td> TGCTACCTACCCAGGG</td><td> 2</td><td> 914</td>
<td> 729399</td><td> N/A</td><td> N/A</td><td> 3705</td><td> 3720</td><td> CAGCTCTAACTGCTAC</td><td> 0</td><td> 915</td>
<td> 729400</td><td> N/A</td><td> N/A</td><td> 3729</td><td> 3744</td><td> GAAGGCTACAGGAAAC</td><td> 0</td><td> 916</td>
<td> 729401</td><td> N/A</td><td> N/A</td><td> 3739</td><td> 3754</td><td> AGCCTGTTAGGAAGGC</td><td> 0</td><td> 917</td>
<td> 729402</td><td> N/A</td><td> N/A</td><td> 3749</td><td> 3764</td><td> CGCCTGCCGGAGCCTG</td><td> 18</td><td> 918</td>
<td> 729403</td><td> N/A</td><td> N/A</td><td> 3762</td><td> 3777</td><td> AGGAAGGCCCTAACGC</td><td> 0</td><td> 919</td>
<td> 729641</td><td> N/A</td><td> N/A</td><td> 2214</td><td> 2229</td><td> CGAAGCATCCAGTGGG</td><td> 20</td><td> 920</td>
<td> 729642</td><td> N/A</td><td> N/A</td><td> 2474</td><td> 2489</td><td> AGGTCCACACGAGCTC</td><td> 30</td><td> 921</td>
<td> 729643</td><td> N/A</td><td> N/A</td><td> 2593</td><td> 2608</td><td> CAGGCAGCTTAGGGAG</td><td> 1</td><td> 922</td>
<td> 729644</td><td> N/A</td><td> N/A</td><td> 2945</td><td> 2960</td><td> CATTTAGTGTGGTTTA</td><td> 28</td><td> 923</td>
<td> 729645</td><td> N/A</td><td> N/A</td><td> 3362</td><td> 3377</td><td> GCATGGAGCCTCAGTT</td><td> 33</td><td> 924</td>
<td> 729646</td><td> N/A</td><td> N/A</td><td> 3499</td><td> 3514</td><td> TGAGACCCCTGGGTGG</td><td> 21</td><td> 925</td>
Table 13
Inhibition of IRF5 RNA by 3-10-3 cEt gapmers targeting SEQ ID NO: 1 and 2
<td> Compound Number</td><td> SEQ ID NO: 1 Start Site</td><td> SEQ ID NO: 1 Stop Site</td><td> SEQ ID NO: 2 Start Site</td><td> SEQ ID NO: 2 Stop Site</td><td> Sequence (5' to 3')</td><td> IRF5 (% Inhibition)</td><td> SEQ ID NO</td>
<td> 665893</td><td> 1228</td><td> 1243</td><td> 10461</td><td> 10476</td><td> GCACTGACACAGGCGG</td><td> 83</td><td> 39</td>
<td> 665933</td><td> 1561</td><td> 1576</td><td> 11126</td><td> 11141</td><td> GCGGTCTTTGAGGTCT</td><td> 59</td><td> 468</td>
<td> 666150</td><td> N/A</td><td> N/A</td><td> 3779</td><td> 3794</td><td> GCATTCGGGTAGCACT</td><td> 46</td><td> 926</td>
<td> 666168</td><td> N/A</td><td> N/A</td><td> 5286</td><td> 5301</td><td> ATCACCACTGTGTACC</td><td> 62</td><td> 927</td>
<td> 729196</td><td> N/A</td><td> N/A</td><td> 3776</td><td> 3791</td><td> TTCGGGTAGCACTTAG</td><td> 49</td><td> 928</td>
<td> 729197</td><td> N/A</td><td> N/A</td><td> 3777</td><td> 3792</td><td> ATTCGGGTAGCACTTA</td><td> 36</td><td> 929</td>
<td> 729198</td><td> N/A</td><td> N/A</td><td> 3778</td><td> 3793</td><td> CATTCGGGTAGCACTT</td><td> 33</td><td> 930</td>
<td> 729199</td><td> N/A</td><td> N/A</td><td> 3780</td><td> 3795</td><td> CGCATTCGGGTAGCAC</td><td> 46</td><td> 931</td>
<td> 729200</td><td> N/A</td><td> N/A</td><td> 3781</td><td> 3796</td><td> ACGCATTCGGGTAGCA</td><td> 40</td><td> 932</td>
<td> 729201</td><td> N/A</td><td> N/A</td><td> 3782</td><td> 3797</td><td> CACGCATTCGGGTAGC</td><td> 59</td><td> 933</td>
<td> 729202</td><td> N/A</td><td> N/A</td><td> 3783</td><td> 3798</td><td> ACACGCATTCGGGTAG</td><td> 36</td><td> 934</td>
<td> 729203</td><td> N/A</td><td> N/A</td><td> 3784</td><td> 3799</td><td> GACACGCATTCGGGTA</td><td> 35</td><td> 935</td>
<td> 729204</td><td> N/A</td><td> N/A</td><td> 5282</td><td> 5297</td><td> CCACTGTGTACCCCAT</td><td> 50</td><td> 936</td>
<td> 729205</td><td> N/A</td><td> N/A</td><td> 5283</td><td> 5298</td><td> ACCACTGTGTACCCCA</td><td> 72</td><td> 937</td>
<td> 729206</td><td> N/A</td><td> N/A</td><td> 5284</td><td> 5299</td><td> CACCACTGTGTACCCC</td><td> 71</td><td> 938</td>
<td> 729207</td><td> N/A</td><td> N/A</td><td> 5285</td><td> 5300</td><td> TCACCACTGTGTACCC</td><td> 57</td><td> 939</td>
<td> 729208</td><td> N/A</td><td> N/A</td><td> 5287</td><td> 5302</td><td> AATCACCACTGTGTAC</td><td> 20</td><td> 940</td>
<td> 729209</td><td> N/A</td><td> N/A</td><td> 5288</td><td> 5303</td><td> AAATCACCACTGTGTA</td><td> 32</td><td> 941</td>
<td> 729210</td><td> N/A</td><td> N/A</td><td> 5289</td><td> 5304</td><td> CAAATCACCACTGTGT</td><td> 12</td><td> 942</td>
<td> 729211</td><td> N/A</td><td> N/A</td><td> 5290</td><td> 5305</td><td> TCAAATCACCACTGTG</td><td> 44</td><td> 943</td>
<td> 729212</td><td> N/A</td><td> N/A</td><td> 5291</td><td> 5306</td><td> ATCAAATCACCACTGT</td><td> 42</td><td> 944</td>
<td> 729404</td><td> N/A</td><td> N/A</td><td> 3812</td><td> 3827</td><td> CTTGGTCCTCCCCCTT</td><td> 21</td><td> 945</td>
<td> 729405</td><td> N/A</td><td> N/A</td><td> 3822</td><td> 3837</td><td> CATCTAGGTTCTTGGT</td><td> 27</td><td> 946</td>
<td> 729406</td><td> N/A</td><td> N/A</td><td> 3835</td><td> 3850</td><td> CTCTAGGGCCATTCAT</td><td> 19</td><td> 947</td>
<td> 729407</td><td> N/A</td><td> N/A</td><td> 3855</td><td> 3870</td><td> GCACCAAACAGATGTT</td><td> 19</td><td> 948</td>
<td> 729408</td><td> N/A</td><td> N/A</td><td> 3885</td><td> 3900</td><td> ACCAACTCAACCCACC</td><td> 13</td><td> 949</td>
<td> 729409</td><td> N/A</td><td> N/A</td><td> 3895</td><td> 3910</td><td> AATCCCATCAACCAAC</td><td> 15</td><td> 950</td>
<td> 729410</td><td> N/A</td><td> N/A</td><td> 3905</td><td> 3920</td><td> TCTTTAGAGAAATCCC</td><td> 38</td><td> 951</td>
<td> 729411</td><td> N/A</td><td> N/A</td><td> 3943</td><td> 3958</td><td> AAGGACACCTGCCCTC</td><td> 6</td><td> 952</td>
<td> 729412</td><td> N/A</td><td> N/A</td><td> 3954</td><td> 3969</td><td> CTGGAGCTCCCAAGGA</td><td> 17</td><td> 953</td>
<td> 729413</td><td> N/A</td><td> N/A</td><td> 3965</td><td> 3980</td><td> AAGAATCTCATCTGGA</td><td> 4</td><td> 954</td>
<td> 729414</td><td> N/A</td><td> N/A</td><td> 3975</td><td> 3990</td><td> TGCCCTCAACAAGAAT</td><td> 0</td><td> 955</td>
<td> 729415</td><td> N/A</td><td> N/A</td><td> 3995</td><td> 4010</td><td> CTGAGAGTTCCCTCCG</td><td> 22</td><td> 956</td>
<td> 729416</td><td> N/A</td><td> N/A</td><td> 4059</td><td> 4074</td><td> CTCCTGCTCAGTCTAC</td><td> 21</td><td> 957</td>
<td> 729417</td><td> N/A</td><td> N/A</td><td> 4100</td><td> 4115</td><td> CTGGGACAGCGAGCGC</td><td> 47</td><td> 958</td>
<td> 729418</td><td> N/A</td><td> N/A</td><td> 4120</td><td> 4135</td><td> TCTTGTCTCAAGCTGG</td><td> 32</td><td> 959</td>
<td> 729419</td><td> N/A</td><td> N/A</td><td> 4140</td><td> 4155</td><td> TGACACCAAAAGCCCG</td><td> 37</td><td> 960</td>
<td> 729420</td><td> N/A</td><td> N/A</td><td> 4150</td><td> 4165</td><td> AGTGACTGCCTGACAC</td><td> 11</td><td> 961</td>
<td> 729421</td><td> N/A</td><td> N/A</td><td> 4185</td><td> 4200</td><td> GCCCACCCCTTGCTCT</td><td> 11</td><td> 962</td>
<td> 729422</td><td> N/A</td><td> N/A</td><td> 4205</td><td> 4220</td><td> CTACTCACACCACAGG</td><td> 38</td><td> 963</td>
<td> 729423</td><td> N/A</td><td> N/A</td><td> 4215</td><td> 4230</td><td> CCGCCTTCCACTACTC</td><td> 26</td><td> 964</td>
<td> 729424</td><td> N/A</td><td> N/A</td><td> 4225</td><td> 4240</td><td> GGCCAGAGAACCGCCT</td><td> 14</td><td> 965</td>
<td> 729425</td><td> N/A</td><td> N/A</td><td> 4241</td><td> 4256</td><td> CAGCAAGCAGCCCGTT</td><td> 21</td><td> 966</td>
<td> 729426</td><td> N/A</td><td> N/A</td><td> 4251</td><td> 4266</td><td> CTGCTAACAGCAGCAA</td><td> 10</td><td> 967</td>
<td> 729427</td><td> N/A</td><td> N/A</td><td> 4261</td><td> 4276</td><td> CATTCTCCAACTGCTA</td><td> 43</td><td> 968</td>
<td> 729428</td><td> N/A</td><td> N/A</td><td> 4272</td><td> 4287</td><td> GCAGAGGCATCCATTC</td><td> 19</td><td> 969</td>
<td> 729429</td><td> N/A</td><td> N/A</td><td> 4292</td><td> 4307</td><td> CCCCAGGTGCCCTTTA</td><td> 7</td><td> 970</td>
<td> 729430</td><td> N/A</td><td> N/A</td><td> 4304</td><td> 4319</td><td> CTGCGGGCGCGGCCCC</td><td> 22</td><td> 971</td>
<td> 729431</td><td> N/A</td><td> N/A</td><td> 4324</td><td> 4339</td><td> GAGTTACGAGTTAGTG</td><td> 49</td><td> 972</td>
<td> 729432</td><td> N/A</td><td> N/A</td><td> 4357</td><td> 4372</td><td> TCATGGAATTTTGTGT</td><td> 31</td><td> 973</td>
<td> 729433</td><td> N/A</td><td> N/A</td><td> 4367</td><td> 4382</td><td> TTGTCTAGTGTCATGG</td><td> 64</td><td> 974</td>
<td> 729434</td><td> N/A</td><td> N/A</td><td> 4379</td><td> 4394</td><td> GCATCAGCTTTCTTGT</td><td> 39</td><td> 975</td>
<td> 729435</td><td> N/A</td><td> N/A</td><td> 4401</td><td> 4416</td><td> TAAGGCCAATTCTCTT</td><td> 19</td><td> 976</td>
<td> 729436</td><td> N/A</td><td> N/A</td><td> 4412</td><td> 4427</td><td> ATCTAGGTATTTAAGG</td><td> 19</td><td> 977</td>
<td> 729437</td><td> N/A</td><td> N/A</td><td> 4422</td><td> 4437</td><td> TCTCCAGTCCATCTAG</td><td> 15</td><td> 978</td>
<td> 729438</td><td> N/A</td><td> N/A</td><td> 4432</td><td> 4447</td><td> AAGGATGGTCTCTCCA</td><td> 14</td><td> 979</td>
<td> 729439</td><td> N/A</td><td> N/A</td><td> 4457</td><td> 4472</td><td> CTCAGAGGTCAAGCTA</td><td> 30</td><td> 980</td>
<td> 729440</td><td> N/A</td><td> N/A</td><td> 4484</td><td> 4499</td><td> GGTCTGCAGGTGGATG</td><td> 26</td><td> 981</td>
<td> 729441</td><td> N/A</td><td> N/A</td><td> 4730</td><td> 4745</td><td> GGGCTTACCTTGAAGA</td><td> 20</td><td> 982</td>
<td> 729442</td><td> N/A</td><td> N/A</td><td> 4744</td><td> 4759</td><td> CAACCTCCTCCCCGGG</td><td> 12</td><td> 983</td>
<td> 729443</td><td> N/A</td><td> N/A</td><td> 4754</td><td> 4769</td><td> GAGGTCCAGCCAACCT</td><td> 1</td><td> 984</td>
<td> 729444</td><td> N/A</td><td> N/A</td><td> 4790</td><td> 4805</td><td> TTATGTGCGCTCCTCT</td><td> 26</td><td> 985</td>
<td> 729445</td><td> N/A</td><td> N/A</td><td> 4806</td><td> 4821</td><td> GAGCTGCCTGTGTGCG</td><td> 31</td><td> 986</td>
<td> 729446</td><td> N/A</td><td> N/A</td><td> 4817</td><td> 4832</td><td> CCAGCCTCGAGGAGCT</td><td> 4</td><td> 987</td>
<td> 729447</td><td> N/A</td><td> N/A</td><td> 4853</td><td> 4868</td><td> CCGGCATCAGCAGCAG</td><td> 57</td><td> 988</td>
<td> 729448</td><td> N/A</td><td> N/A</td><td> 4897</td><td> 4912</td><td> AAAGGTGTACCCTGTG</td><td> 36</td><td> 989</td>
<td> 729449</td><td> N/A</td><td> N/A</td><td> 5076</td><td> 5091</td><td> AAGATGTGCCCTAGGC</td><td> 35</td><td> 990</td>
<td> 729450</td><td> N/A</td><td> N/A</td><td> 5087</td><td> 5102</td><td> GCAGGTTAGAAAAGAT</td><td> 16</td><td> 991</td>
<td> 729451</td><td> N/A</td><td> N/A</td><td> 5097</td><td> 5112</td><td> GCTCTAGGGTGCAGGT</td><td> 49</td><td> 992</td>
<td> 729452</td><td> N/A</td><td> N/A</td><td> 5107</td><td> 5122</td><td> TCCCCACGATGCTCTA</td><td> 14</td><td> 993</td>
<td> 729453</td><td> N/A</td><td> N/A</td><td> 5140</td><td> 5155</td><td> CGAGTTATGGGAAGGC</td><td> 66</td><td> 994</td>
<td> 729454</td><td> N/A</td><td> N/A</td><td> 5170</td><td> 5185</td><td> AGGAGTGAGACGAGCA</td><td> 75</td><td> 995</td>
<td> 729455</td><td> N/A</td><td> N/A</td><td> 5190</td><td> 5205</td><td> AACAAGTCCTCATGAG</td><td> 19</td><td> 996</td>
<td> 729456</td><td> N/A</td><td> N/A</td><td> 5213</td><td> 5228</td><td> TCCTTTAGCATATGCG</td><td> 67</td><td> 997</td>
<td> 729647</td><td> N/A</td><td> N/A</td><td> 3845</td><td> 3860</td><td> GATGTTACCTCTCTAG</td><td> 38</td><td> 998</td>
<td> 729648</td><td> N/A</td><td> N/A</td><td> 4016</td><td> 4031</td><td> AGTTTTCTCACCCTCC</td><td> 49</td><td> 999</td>
<td> 729649</td><td> N/A</td><td> N/A</td><td> 4049</td><td> 4064</td><td> GTCTACACCCCTAGTT</td><td> 24</td><td> 1000</td>
<td> 729650</td><td> N/A</td><td> N/A</td><td> 4195</td><td> 4210</td><td> CACAGGTTAGGCCCAC</td><td> 44</td><td> 1001</td>
<td> 729651</td><td> N/A</td><td> N/A</td><td> 4467</td><td> 4482</td><td> GGACAGGGTACTCAGA</td><td> 26</td><td> 1002</td>
Table 14
Inhibition of IRF5 RNA by 3-10-3 cEt gapmers targeting SEQ ID NO: 1 and 2
<td> Compound Number</td><td> SEQ ID NO: 1 Start Site</td><td> SEQ ID NO: 1 Stop Site</td><td> SEQ ID NO: 2 Start Site</td><td> SEQ ID NO: 2 Stop Site</td><td> Sequence (5' to 3')</td><td> IRF5 (% Inhibition)</td><td> SEQ ID NO</td>
<td> 665893</td><td> 1228</td><td> 1243</td><td> 10461</td><td> 10476</td><td> GCACTGACACAGGCGG</td><td> 23</td><td> 39</td>
<td> 665933</td><td> 1561</td><td> 1576</td><td> 11126</td><td> 11141</td><td> GCGGTCTTTGAGGTCT</td><td> 46</td><td> 468</td>
<td> 666178</td><td> N/A</td><td> N/A</td><td> 6540</td><td> 6555</td><td> GCATTCCATATACACA</td><td> 51</td><td> 1003</td>
<td> 666184</td><td> N/A</td><td> N/A</td><td> 6972</td><td> 6987</td><td> TGCCTTTTAATGTTGA</td><td> 36</td><td> 1004</td>
<td> 666187</td><td> N/A</td><td> N/A</td><td> 7176</td><td> 7191</td><td> CTAGACAAATATGCAG</td><td> 29</td><td> 1005</td>
<td> 729213</td><td> N/A</td><td> N/A</td><td> 6539</td><td> 6554</td><td> CATTCCATATACACAC</td><td> 71</td><td> 1006</td>
<td> 729214</td><td> N/A</td><td> N/A</td><td> 6541</td><td> 6556</td><td> TGCATTCCATATACAC</td><td> 28</td><td> 1007</td>
<td> 729215</td><td> N/A</td><td> N/A</td><td> 6542</td><td> 6557</td><td> TTGCATTCCATATACA</td><td> 27</td><td> 1008</td>
<td> 729216</td><td> N/A</td><td> N/A</td><td> 6543</td><td> 6558</td><td> TTTGCATTCCATATAC</td><td> 3</td><td> 1009</td>
<td> 729217</td><td> N/A</td><td> N/A</td><td> 6544</td><td> 6559</td><td> TTTTGCATTCCATATA</td><td> 19</td><td> 1010</td>
<td> 729218</td><td> N/A</td><td> N/A</td><td> 6545</td><td> 6560</td><td> ATTTTGCATTCCATAT</td><td> 20</td><td> 1011</td>
<td> 729219</td><td> N/A</td><td> N/A</td><td> 6969</td><td> 6984</td><td> CTTTTAATGTTGAATT</td><td> 0</td><td> 1012</td>
<td> 729220</td><td> N/A</td><td> N/A</td><td> 6970</td><td> 6985</td><td> CCTTTTAATGTTGAAT</td><td> 0</td><td> 1013</td>
<td> 729221</td><td> N/A</td><td> N/A</td><td> 6971</td><td> 6986</td><td> GCCTTTTAATGTTGAA</td><td> 50</td><td> 1014</td>
<td> 729222</td><td> N/A</td><td> N/A</td><td> 6973</td><td> 6988</td><td> ATGCCTTTTAATGTTG</td><td> 0</td><td> 1015</td>
<td> 729223</td><td> N/A</td><td> N/A</td><td> 6974</td><td> 6989</td><td> TATGCCTTTTAATGTT</td><td> 10</td><td> 1016</td>
<td> 729224</td><td> N/A</td><td> N/A</td><td> 6975</td><td> 6990</td><td> CTATGCCTTTTAATGT</td><td> 0</td><td> 1017</td>
<td> 729225</td><td> N/A</td><td> N/A</td><td> 6976</td><td> 6991</td><td> TCTATGCCTTTTAATG</td><td> 13</td><td> 1018</td>
<td> 729226</td><td> N/A</td><td> N/A</td><td> 7171</td><td> 7186</td><td> CAAATATGCAGATATC</td><td> 3</td><td> 1019</td>
<td> 729227</td><td> N/A</td><td> N/A</td><td> 7173</td><td> 7188</td><td> GACAAATATGCAGATA</td><td> 0</td><td> 1020</td>
<td> 729228</td><td> N/A</td><td> N/A</td><td> 7174</td><td> 7189</td><td> AGACAAATATGCAGAT</td><td> 1</td><td> 1021</td>
<td> 729229</td><td> N/A</td><td> N/A</td><td> 7175</td><td> 7190</td><td> TAGACAAATATGCAGA</td><td> 27</td><td> 1022</td>
<td> 729230</td><td> N/A</td><td> N/A</td><td> 7177</td><td> 7192</td><td> TCTAGACAAATATGCA</td><td> 18</td><td> 1023</td>
<td> 729231</td><td> N/A</td><td> N/A</td><td> 7178</td><td> 7193</td><td> GTCTAGACAAATATGC</td><td> 0</td><td> 1024</td>
<td> 729232</td><td> N/A</td><td> N/A</td><td> 7179</td><td> 7194</td><td> AGTCTAGACAAATATG</td><td> 12</td><td> 1025</td>
<td> 729233</td><td> N/A</td><td> N/A</td><td> 7180</td><td> 7195</td><td> AAGTCTAGACAAATAT</td><td> 0</td><td> 1026</td>
<td> 729234</td><td> N/A</td><td> N/A</td><td> 7181</td><td> 7196</td><td> TAAGTCTAGACAAATA</td><td> 0</td><td> 1027</td>
<td> 729457</td><td> N/A</td><td> N/A</td><td> 5292</td><td> 5307</td><td> TATCAAATCACCACTG</td><td> 0</td><td> 1028</td>
<td> 729458</td><td> N/A</td><td> N/A</td><td> 5302</td><td> 5317</td><td> TCACTGTGCTTATCAA</td><td> 22</td><td> 1029</td>
<td> 729459</td><td> N/A</td><td> N/A</td><td> 5314</td><td> 5329</td><td> TACCTGATCTGATCAC</td><td> 0</td><td> 1030</td>
<td> 729460</td><td> N/A</td><td> N/A</td><td> 5325</td><td> 5340</td><td> GATATGCTAAGTACCT</td><td> 43</td><td> 1031</td>
<td> 729461</td><td> N/A</td><td> N/A</td><td> 5368</td><td> 5383</td><td> GTTTGTTCCCAACACA</td><td> 34</td><td> 1032</td>
<td> 729462</td><td> N/A</td><td> N/A</td><td> 5393</td><td> 5408</td><td> GTATCTGAATCTTATA</td><td> 22</td><td> 1033</td>
<td> 729463</td><td> N/A</td><td> N/A</td><td> 5403</td><td> 5418</td><td> GATTGATGATGTATCT</td><td> 0</td><td> 1034</td>
<td> 729464</td><td> N/A</td><td> N/A</td><td> 5413</td><td> 5428</td><td> ACAATTGAAAGATTGA</td><td> 0</td><td> 1035</td>
<td> 729465</td><td> N/A</td><td> N/A</td><td> 5464</td><td> 5479</td><td> ATCTGGTCAACAGTGT</td><td> 21</td><td> 1036</td>
<td> 729466</td><td> N/A</td><td> N/A</td><td> 5606</td><td> 5621</td><td> CAAGGAGGTTGAGATG</td><td> 0</td><td> 1037</td>
<td> 729467</td><td> N/A</td><td> N/A</td><td> 5804</td><td> 5819</td><td> GTAGTACATCAATTAA</td><td> 0</td><td> 1038</td>
<td> 729468</td><td> N/A</td><td> N/A</td><td> 5814</td><td> 5829</td><td> ATGTACAGTTGTAGTA</td><td> 0</td><td> 1039</td>
<td> 729469</td><td> N/A</td><td> N/A</td><td> 5868</td><td> 5883</td><td> AACACTAGGCAACAGA</td><td> 0</td><td> 1040</td>
<td> 729470</td><td> N/A</td><td> N/A</td><td> 5878</td><td> 5893</td><td> CCAATGGTGCAACACT</td><td> 0</td><td> 1041</td>
<td> 729471</td><td> N/A</td><td> N/A</td><td> 5888</td><td> 5903</td><td> CCACTGCTCACCAATG</td><td> 0</td><td> 1042</td>
<td> 729472</td><td> N/A</td><td> N/A</td><td> 5910</td><td> 5925</td><td> TGGAGGTTGTGCTATG</td><td> 0</td><td> 1043</td>
<td> 729473</td><td> N/A</td><td> N/A</td><td> 5921</td><td> 5936</td><td> TTGAGCTGAGTTGGAG</td><td> 0</td><td> 1044</td>
<td> 729474</td><td> N/A</td><td> N/A</td><td> 6478</td><td> 6493</td><td> ACATCCTAGCATTAAG</td><td> 0</td><td> 1045</td>
<td> 729475</td><td> N/A</td><td> N/A</td><td> 6495</td><td> 6510</td><td> AAACTATTATGCGAGG</td><td> 55</td><td> 1046</td>
<td> 729476</td><td> N/A</td><td> N/A</td><td> 6549</td><td> 6564</td><td> TCCAATTTTGCATTCC</td><td> 64</td><td> 1047</td>
<td> 729477</td><td> N/A</td><td> N/A</td><td> 6559</td><td> 6574</td><td> TTCACTTGATTCCAAT</td><td> 14</td><td> 1048</td>
<td> 729478</td><td> N/A</td><td> N/A</td><td> 6614</td><td> 6629</td><td> AAGGAAAGCTGATCCT</td><td> 0</td><td> 1049</td>
<td> 729479</td><td> N/A</td><td> N/A</td><td> 6624</td><td> 6639</td><td> GTATGTTGGAAAGGAA</td><td> 19</td><td> 1050</td>
<td> 729480</td><td> N/A</td><td> N/A</td><td> 6639</td><td> 6654</td><td> AAAAGTGATGTGGACG</td><td> 23</td><td> 1051</td>
<td> 729481</td><td> N/A</td><td> N/A</td><td> 6666</td><td> 6681</td><td> CATTCCAGTGGAAATT</td><td> 2</td><td> 1052</td>
<td> 729482</td><td> N/A</td><td> N/A</td><td> 6679</td><td> 6694</td><td> AATTGTGCTAAACCAT</td><td> 10</td><td> 1053</td>
<td> 729483</td><td> N/A</td><td> N/A</td><td> 6689</td><td> 6704</td><td> TCAGTGACCAAATTGT</td><td> 30</td><td> 1054</td>
<td> 729484</td><td> N/A</td><td> N/A</td><td> 6710</td><td> 6725</td><td> CAAGTATCTAAAAACC</td><td> 0</td><td> 1055</td>
<td> 729485</td><td> N/A</td><td> N/A</td><td> 6752</td><td> 6767</td><td> CATGACAATGTGGTTT</td><td> 37</td><td> 1056</td>
<td> 729486</td><td> N/A</td><td> N/A</td><td> 6762</td><td> 6777</td><td> AGACAGCCTACATGAC</td><td> 23</td><td> 1057</td>
<td> 729487</td><td> N/A</td><td> N/A</td><td> 6772</td><td> 6787</td><td> GGAAGCATTAAGACAG</td><td> 6</td><td> 1058</td>
<td> 729488</td><td> N/A</td><td> N/A</td><td> 6799</td><td> 6814</td><td> CCCAAAATAATTGAGG</td><td> 0</td><td> 1059</td>
<td> 729489</td><td> N/A</td><td> N/A</td><td> 6810</td><td> 6825</td><td> GGAAATCAACCCCCAA</td><td> 21</td><td> 1060</td>
<td> 729490</td><td> N/A</td><td> N/A</td><td> 6840</td><td> 6855</td><td> TTGCCTTTGACCCAGC</td><td> 34</td><td> 1061</td>
<td> 729491</td><td> N/A</td><td> N/A</td><td> 6887</td><td> 6902</td><td> GCCCAAAAACTAAGAA</td><td> 0</td><td> 1062</td>
<td> 729492</td><td> N/A</td><td> N/A</td><td> 6897</td><td> 6912</td><td> TAAGGATCAAGCCCAA</td><td> 26</td><td> 1063</td>
<td> 729493</td><td> N/A</td><td> N/A</td><td> 6947</td><td> 6962</td><td> CTGTATTACCTATACA</td><td> 0</td><td> 1064</td>
<td> 729494</td><td> N/A</td><td> N/A</td><td> 6958</td><td> 6973</td><td> GAATTTTGTGACTGTA</td><td> 56</td><td> 1065</td>
<td> 729495</td><td> N/A</td><td> N/A</td><td> 6981</td><td> 6996</td><td> ACCATTCTATGCCTTT</td><td> 53</td><td> 1066</td>
<td> 729496</td><td> N/A</td><td> N/A</td><td> 6998</td><td> 7013</td><td> GAGACTTTTTGCTCTA</td><td> 0</td><td> 1067</td>
<td> 729497</td><td> N/A</td><td> N/A</td><td> 7019</td><td> 7034</td><td> GTGATGAACCAGGGAA</td><td> 44</td><td> 1068</td>
<td> 729498</td><td> N/A</td><td> N/A</td><td> 7045</td><td> 7060</td><td> GGAAAGGCTAGGGAGG</td><td> 1</td><td> 1069</td>
<td> 729499</td><td> N/A</td><td> N/A</td><td> 7059</td><td> 7074</td><td> ACGGCTGCCTCTAGGG</td><td> 9</td><td> 1070</td>
<td> 729500</td><td> N/A</td><td> N/A</td><td> 7128</td><td> 7143</td><td> AGGATAGTTCCATATT</td><td> 15</td><td> 1071</td>
<td> 729501</td><td> N/A</td><td> N/A</td><td> 7145</td><td> 7160</td><td> TATGAAAAGTAGAGGA</td><td> 0</td><td> 1072</td>
<td> 729502</td><td> N/A</td><td> N/A</td><td> 7156</td><td> 7171</td><td> CTAGCATTTCTTATGA</td><td> 2</td><td> 1073</td>
<td> 729503</td><td> N/A</td><td> N/A</td><td> 7184</td><td> 7199</td><td> TATTAAGTCTAGACAA</td><td> 0</td><td> 1074</td>
<td> 729504</td><td> N/A</td><td> N/A</td><td> 7194</td><td> 7209</td><td> CGTCAAGAAGTATTAA</td><td> 0</td><td> 1075</td>
<td> 729505</td><td> N/A</td><td> N/A</td><td> 7208</td><td> 7223</td><td> TGACATGTAGCAATCG</td><td> 28</td><td> 1076</td>
<td> 729652</td><td> N/A</td><td> N/A</td><td> 6458</td><td> 6473</td><td> TTGGAGAGAGCACAGT</td><td> 11</td><td> 1077</td>
<td> 729653</td><td> N/A</td><td> N/A</td><td> 6654</td><td> 6669</td><td> AATTCTACAGTCACGA</td><td> 26</td><td> 1078</td>
<td> 729654</td><td> N/A</td><td> N/A</td><td> 7106</td><td> 7121</td><td> CATGTGCATAAAAATC</td><td> 0</td><td> 1079</td>
Table 15
Inhibition of IRF5 RNA by 3-10-3 cEt gapmers targeting SEQ ID NO: 1 and 2
<td> Compound Number</td><td> SEQ ID NO: 1 Start Site</td><td> SEQ ID NO: 1 Stop Site</td><td> SEQ ID NO: 2 Start Site</td><td> SEQ ID NO: 2 Stop Site</td><td> Sequence (5' to 3')</td><td> IRF5 (% Inhibition)</td><td> SEQ ID NO</td>
<td> 665893</td><td> 1228</td><td> 1243</td><td> 10461</td><td> 10476</td><td> GCACTGACACAGGCGG</td><td> 78</td><td> 39</td>
<td> 665933</td><td> 1561</td><td> 1576</td><td> 11126</td><td> 11141</td><td> GCGGTCTTTGAGGTCT</td><td> 58</td><td> 468</td>
<td> 666188</td><td> N/A</td><td> N/A</td><td> 7391</td><td> 7406</td><td> AGAAGCATTCACACAA</td><td> 41</td><td> 1080</td>
<td> 729235</td><td> N/A</td><td> N/A</td><td> 7387</td><td> 7402</td><td> GCATTCACACAAAATA</td><td> 52</td><td> 1081</td>
<td> 729236</td><td> N/A</td><td> N/A</td><td> 7388</td><td> 7403</td><td> AGCATTCACACAAAAT</td><td> 54</td><td> 1082</td>
<td> 729237</td><td> N/A</td><td> N/A</td><td> 7389</td><td> 7404</td><td> AAGCATTCACACAAAA</td><td> 27</td><td> 1083</td>
<td> 729238</td><td> N/A</td><td> N/A</td><td> 7390</td><td> 7405</td><td> GAAGCATTCACACAAA</td><td> 39</td><td> 1084</td>
<td> 729239</td><td> N/A</td><td> N/A</td><td> 7392</td><td> 7407</td><td> TAGAAGCATTCACACA</td><td> 41</td><td> 1085</td>
<td> 729240</td><td> N/A</td><td> N/A</td><td> 7393</td><td> 7408</td><td> ATAGAAGCATTCACAC</td><td> 22</td><td> 1086</td>
<td> 729241</td><td> N/A</td><td> N/A</td><td> 7394</td><td> 7409</td><td> CATAGAAGCATTCACA</td><td> 46</td><td> 1087</td>
<td> 729242</td><td> N/A</td><td> N/A</td><td> 7395</td><td> 7410</td><td> TCATAGAAGCATTCAC</td><td> 50</td><td> 1088</td>
<td> 729243</td><td> N/A</td><td> N/A</td><td> 7396</td><td> 7411</td><td> ATCATAGAAGCATTCA</td><td> 59</td><td> 1089</td>
<td> 729506</td><td> N/A</td><td> N/A</td><td> 7218</td><td> 7233</td><td> GTTTATAAGCTGACAT</td><td> 39</td><td> 1090</td>
<td> 729507</td><td> N/A</td><td> N/A</td><td> 7228</td><td> 7243</td><td> GCAGGAAACTGTTTAT</td><td> 55</td><td> 1091</td>
<td> 729508</td><td> N/A</td><td> N/A</td><td> 7253</td><td> 7268</td><td> ACTGGGCAGCACAAAA</td><td> 25</td><td> 1092</td>
<td> 729509</td><td> N/A</td><td> N/A</td><td> 7271</td><td> 7286</td><td> ACCCATTGAATGAAAA</td><td> 23</td><td> 1093</td>
<td> 729510</td><td> N/A</td><td> N/A</td><td> 7281</td><td> 7296</td><td> ATTACGGCCAACCCAT</td><td> 0</td><td> 1094</td>
<td> 729511</td><td> N/A</td><td> N/A</td><td> 7291</td><td> 7306</td><td> GGCTGGTGAAATTACG</td><td> 10</td><td> 1095</td>
<td> 729512</td><td> N/A</td><td> N/A</td><td> 7306</td><td> 7321</td><td> CATCCATCAATGAGGG</td><td> 51</td><td> 1096</td>
<td> 729513</td><td> N/A</td><td> N/A</td><td> 7316</td><td> 7331</td><td> CCCAATGCAACATCCA</td><td> 69</td><td> 1097</td>
<td> 729514</td><td> N/A</td><td> N/A</td><td> 7328</td><td> 7343</td><td> TGACCCAAAATACCCA</td><td> 44</td><td> 1098</td>
<td> 729515</td><td> N/A</td><td> N/A</td><td> 7338</td><td> 7353</td><td> GTGTAAAAGATGACCC</td><td> 37</td><td> 1099</td>
<td> 729516</td><td> N/A</td><td> N/A</td><td> 7349</td><td> 7364</td><td> AGCAGTGCTGTGTGTA</td><td> 48</td><td> 1100</td>
<td> 729517</td><td> N/A</td><td> N/A</td><td> 7372</td><td> 7387</td><td> ATTGCACACACAAAGT</td><td> 10</td><td> 1101</td>
<td> 729518</td><td> N/A</td><td> N/A</td><td> 7397</td><td> 7412</td><td> TATCATAGAAGCATTC</td><td> 24</td><td> 1102</td>
<td> 729519</td><td> N/A</td><td> N/A</td><td> 7426</td><td> 7441</td><td> CTATTTGATTTCTAGG</td><td> 18</td><td> 1103</td>
<td> 729520</td><td> N/A</td><td> N/A</td><td> 7437</td><td> 7452</td><td> TTTTAACCCAGCTATT</td><td> 6</td><td> 1104</td>
<td> 729521</td><td> N/A</td><td> N/A</td><td> 7460</td><td> 7475</td><td> GGTTACCAACATTTCT</td><td> 42</td><td> 1105</td>
<td> 729522</td><td> N/A</td><td> N/A</td><td> 7470</td><td> 7485</td><td> GTGAGGTGAGGGTTAC</td><td> 38</td><td> 1106</td>
<td> 729523</td><td> N/A</td><td> N/A</td><td> 7508</td><td> 7523</td><td> ACACTGGAGCTGTTGG</td><td> 51</td><td> 1107</td>
<td> 729524</td><td> N/A</td><td> N/A</td><td> 7519</td><td> 7534</td><td> ACAGGCTCGAGACACT</td><td> 31</td><td> 1108</td>
<td> 729525</td><td> N/A</td><td> N/A</td><td> 7529</td><td> 7544</td><td> TGCACATAGGACAGGC</td><td> 22</td><td> 1109</td>
<td> 729526</td><td> N/A</td><td> N/A</td><td> 7550</td><td> 7565</td><td> TAAAGCACTCAGAGCT</td><td> 16</td><td> 1110</td>
<td> 729527</td><td> N/A</td><td> N/A</td><td> 7560</td><td> 7575</td><td> TTGATGTCCGTAAAGC</td><td> 53</td><td> 1111</td>
<td> 729528</td><td> N/A</td><td> N/A</td><td> 7876</td><td> 7891</td><td> AGCGAAGACTCAAGGG</td><td> 48</td><td> 1112</td>
<td> 729529</td><td> N/A</td><td> N/A</td><td> 7887</td><td> 7902</td><td> CATGGAGTGGCAGCGA</td><td> 42</td><td> 1113</td>
<td> 729530</td><td> N/A</td><td> N/A</td><td> 7899</td><td> 7914</td><td> AGTTGCCCACCTCATG</td><td> 22</td><td> 1114</td>
<td> 729531</td><td> N/A</td><td> N/A</td><td> 7909</td><td> 7924</td><td> ATCTCCTCACAGTTGC</td><td> 28</td><td> 1115</td>
<td> 729532</td><td> N/A</td><td> N/A</td><td> 7920</td><td> 7935</td><td> CCTTTGTCTTGATCTC</td><td> 48</td><td> 1116</td>
<td> 729533</td><td> N/A</td><td> N/A</td><td> 7936</td><td> 7951</td><td> GCCATGTCACTGCCTC</td><td> 30</td><td> 1117</td>
<td> 729534</td><td> N/A</td><td> N/A</td><td> 7953</td><td> 7968</td><td> CGCCAGCTGTGTGCCA</td><td> 28</td><td> 1118</td>
<td> 729535</td><td> N/A</td><td> N/A</td><td> 7966</td><td> 7981</td><td> TGGAAGTGCCCCCCGC</td><td> 34</td><td> 1119</td>
<td> 729536</td><td> N/A</td><td> N/A</td><td> 7976</td><td> 7991</td><td> GGTTTGAATCTGGAAG</td><td> 31</td><td> 1120</td>
<td> 729537</td><td> N/A</td><td> N/A</td><td> 8000</td><td> 8015</td><td> GGTGAGCACCCTGGAG</td><td> 30</td><td> 1121</td>
<td> 729538</td><td> N/A</td><td> N/A</td><td> 8027</td><td> 8042</td><td> TCTAAGGAGGACAGCG</td><td> 35</td><td> 1122</td>
<td> 729539</td><td> N/A</td><td> N/A</td><td> 8043</td><td> 8058</td><td> GTGAAACAGTGTGATC</td><td> 40</td><td> 1123</td>
<td> 729540</td><td> N/A</td><td> N/A</td><td> 8064</td><td> 8079</td><td> ATAGTCCCTGCTCCTG</td><td> 49</td><td> 1124</td>
<td> 729541</td><td> N/A</td><td> N/A</td><td> 8144</td><td> 8159</td><td> GTGGGAGTCTGCCACA</td><td> 6</td><td> 1125</td>
<td> 729542</td><td> N/A</td><td> N/A</td><td> 8159</td><td> 8174</td><td> GACCTGGTTTGCAGCG</td><td> 34</td><td> 1126</td>
<td> 729543</td><td> N/A</td><td> N/A</td><td> 8171</td><td> 8186</td><td> CGCTGAGCCCCAGACC</td><td> 0</td><td> 1127</td>
<td> 729544</td><td> N/A</td><td> N/A</td><td> 8181</td><td> 8196</td><td> GGCTGAGCCTCGCTGA</td><td> 22</td><td> 1128</td>
<td> 729545</td><td> N/A</td><td> N/A</td><td> 8194</td><td> 8209</td><td> AACTTCGGCTACAGGC</td><td> 39</td><td> 1129</td>
<td> 729546</td><td> N/A</td><td> N/A</td><td> 8213</td><td> 8228</td><td> GACTCTACTGTGTGGG</td><td> 38</td><td> 1130</td>
<td> 729547</td><td> N/A</td><td> N/A</td><td> 8266</td><td> 8281</td><td> CACAGAGAACCTCATC</td><td> 11</td><td> 1131</td>
<td> 729548</td><td> N/A</td><td> N/A</td><td> 8276</td><td> 8291</td><td> AATAGCCGACCACAGA</td><td> 10</td><td> 1132</td>
<td> 729549</td><td> N/A</td><td> N/A</td><td> 8489</td><td> 8504</td><td> GCCTGATACCTGTGGG</td><td> 3</td><td> 1133</td>
<td> 729550</td><td> N/A</td><td> N/A</td><td> 8525</td><td> 8540</td><td> ATTGCACAGCCTCCCA</td><td> 8</td><td> 1134</td>
<td> 729551</td><td> N/A</td><td> N/A</td><td> 8555</td><td> 8570</td><td> ACCCAAGAGCTCATGG</td><td> 6</td><td> 1135</td>
<td> 729552</td><td> N/A</td><td> N/A</td><td> 8569</td><td> 8584</td><td> CTTGGCCTGCCTGCAC</td><td> 10</td><td> 1136</td>
<td> 729553</td><td> N/A</td><td> N/A</td><td> 8598</td><td> 8613</td><td> TTCCTGGACCACTGCC</td><td> 15</td><td> 1137</td>
<td> 729554</td><td> N/A</td><td> N/A</td><td> 8617</td><td> 8632</td><td> GCGGGAGCCCCCGCAT</td><td> 22</td><td> 1138</td>
<td> 729555</td><td> N/A</td><td> N/A</td><td> 8637</td><td> 8652</td><td> GCCCTGGGTGTCATGA</td><td> 17</td><td> 1139</td>
<td> 729556</td><td> N/A</td><td> N/A</td><td> 8648</td><td> 8663</td><td> CACTCCTGGAAGCCCT</td><td> 0</td><td> 1140</td>
<td> 729557</td><td> N/A</td><td> N/A</td><td> 8661</td><td> 8676</td><td> GACCCATCCCAGCCAC</td><td> 7</td><td> 1141</td>
<td> 729558</td><td> N/A</td><td> N/A</td><td> 8671</td><td> 8686</td><td> ATATGCCAGTGACCCA</td><td> 15</td><td> 1142</td>
<td> 729559</td><td> N/A</td><td> N/A</td><td> 8681</td><td> 8696</td><td> GCCATTCCTGATATGC</td><td> 28</td><td> 1143</td>
<td> 729560</td><td> N/A</td><td> N/A</td><td> 8691</td><td> 8706</td><td> TGCACGCCAAGCCATT</td><td> 28</td><td> 1144</td>
<td> 729561</td><td> N/A</td><td> N/A</td><td> 8711</td><td> 8726</td><td> GAAGCACCCAGGTCCC</td><td> 24</td><td> 1145</td>
<td> 729562</td><td> N/A</td><td> N/A</td><td> 8722</td><td> 8737</td><td> ATGGTAAGGAAGAAGC</td><td> 18</td><td> 1146</td>
<td> 729563</td><td> N/A</td><td> N/A</td><td> 8732</td><td> 8747</td><td> AACGAGGGCAATGGTA</td><td> 11</td><td> 1147</td>
<td> 729564</td><td> N/A</td><td> N/A</td><td> 8763</td><td> 8778</td><td> CCATGAGACCTAGGCT</td><td> 3</td><td> 1148</td>
<td> 729565</td><td> N/A</td><td> N/A</td><td> 8773</td><td> 8788</td><td> ACTCCATGGGCCATGA</td><td> 3</td><td> 1149</td>
<td> 729566</td><td> N/A</td><td> N/A</td><td> 8794</td><td> 8809</td><td> GGATTGGGAAAGACCT</td><td> 15</td><td> 1150</td>
<td> 729567</td><td> N/A</td><td> N/A</td><td> 8817</td><td> 8832</td><td> CGAGGTGGAGGGCACA</td><td> 11</td><td> 1151</td>
<td> 729568</td><td> N/A</td><td> N/A</td><td> 8827</td><td> 8842</td><td> CAACACAGGGCGAGGT</td><td> 8</td><td> 1152</td>
<td> 729569</td><td> N/A</td><td> N/A</td><td> 8859</td><td> 8874</td><td> TATGCAGCTTCTGCCT</td><td> 3</td><td> 1153</td>
<td> 729655</td><td> N/A</td><td> N/A</td><td> 7480</td><td> 7495</td><td> TGGCAATTAGGTGAGG</td><td> 48</td><td> 1154</td>
<td> 729656</td><td> N/A</td><td> N/A</td><td> 8101</td><td> 8116</td><td> CAAGCTACATGAAATC</td><td> 11</td><td> 1155</td>
<td> 729657</td><td> N/A</td><td> N/A</td><td> 8627</td><td> 8642</td><td> TCATGACCTAGCGGGA</td><td> 11</td><td> 1156</td>
Table 16
Inhibition of IRF5 RNA by 3-10-3 cEt gapmers targeting SEQ ID NO: 1 and 2
<td> Compound Number</td><td> SEQ ID NO: 1 Start Site</td><td> SEQ ID NO: 1 Stop Site</td><td> SEQ ID NO: 2 Start Site</td><td> SEQ ID NO: 2 Stop Site</td><td> Sequence (5' to 3')</td><td> IRF5 (% Inhibition)</td><td> SEQ ID NO</td>
<td> 665893</td><td> 1228</td><td> 1243</td><td> 10461</td><td> 10476</td><td> GCACTGACACAGGCGG</td><td> 83</td><td> 39</td>
<td> 665933</td><td> 1561</td><td> 1576</td><td> 11126</td><td> 11141</td><td> GCGGTCTTTGAGGTCT</td><td> 64</td><td> 468</td>
<td> 666208</td><td> N/A</td><td> N/A</td><td> 9349</td><td> 9364</td><td> CAGTTTAGCTCAGGCA</td><td> 69</td><td> 1157</td>
<td> 729244</td><td> N/A</td><td> N/A</td><td> 9344</td><td> 9359</td><td> TAGCTCAGGCAAGACC</td><td> 32</td><td> 1158</td>
<td> 729245</td><td> N/A</td><td> N/A</td><td> 9345</td><td> 9360</td><td> TTAGCTCAGGCAAGAC</td><td> 17</td><td> 1159</td>
<td> 729246</td><td> N/A</td><td> N/A</td><td> 9346</td><td> 9361</td><td> TTTAGCTCAGGCAAGA</td><td> 23</td><td> 1160</td>
<td> 729247</td><td> N/A</td><td> N/A</td><td> 9347</td><td> 9362</td><td> GTTTAGCTCAGGCAAG</td><td> 24</td><td> 1161</td>
<td> 729248</td><td> N/A</td><td> N/A</td><td> 9348</td><td> 9363</td><td> AGTTTAGCTCAGGCAA</td><td> 47</td><td> 1162</td>
<td> 729249</td><td> N/A</td><td> N/A</td><td> 9353</td><td> 9368</td><td> GCCTCAGTTTAGCTCA</td><td> 23</td><td> 1163</td>
<td> 729250</td><td> N/A</td><td> N/A</td><td> 9354</td><td> 9369</td><td> AGCCTCAGTTTAGCTC</td><td> 9</td><td> 1164</td>
<td> 729570</td><td> N/A</td><td> N/A</td><td> 8869</td><td> 8884</td><td> CTGTAGCTCCTATGCA</td><td> 14</td><td> 1165</td>
<td> 729571</td><td> N/A</td><td> N/A</td><td> 8895</td><td> 8910</td><td> AGAAGCAAGATCCCCT</td><td> 2</td><td> 1166</td>
<td> 729572</td><td> N/A</td><td> N/A</td><td> 8905</td><td> 8920</td><td> ATGTCGGAGGAGAAGC</td><td> 0</td><td> 1167</td>
<td> 729573</td><td> N/A</td><td> N/A</td><td> 8915</td><td> 8930</td><td> AAAGGAGTCAATGTCG</td><td> 0</td><td> 1168</td>
<td> 729574</td><td> N/A</td><td> N/A</td><td> 8925</td><td> 8940</td><td> GCAGGGCAGTAAAGGA</td><td> 12</td><td> 1169</td>
<td> 729575</td><td> N/A</td><td> N/A</td><td> 8948</td><td> 8963</td><td> GTCTGCACAGCAGGGA</td><td> 24</td><td> 1170</td>
<td> 729576</td><td> N/A</td><td> N/A</td><td> 9021</td><td> 9036</td><td> AACCCACACTCACCTC</td><td> 25</td><td> 1171</td>
<td> 729577</td><td> N/A</td><td> N/A</td><td> 9046</td><td> 9061</td><td> CGTCCAGGGCTCCACC</td><td> 13</td><td> 1172</td>
<td> 729578</td><td> N/A</td><td> N/A</td><td> 9060</td><td> 9075</td><td> GACAGCAGAGAGCTCG</td><td> 9</td><td> 1173</td>
<td> 729579</td><td> N/A</td><td> N/A</td><td> 9082</td><td> 9097</td><td> GCGGAAACCTAAGGCC</td><td> 12</td><td> 1174</td>
<td> 729580</td><td> N/A</td><td> N/A</td><td> 9118</td><td> 9133</td><td> ATTGAGAGGGCCACGG</td><td> 27</td><td> 1175</td>
<td> 729581</td><td> N/A</td><td> N/A</td><td> 9133</td><td> 9148</td><td> GAAACAAGGAGAACTA</td><td> 29</td><td> 1176</td>
<td> 729582</td><td> N/A</td><td> N/A</td><td> 9151</td><td> 9166</td><td> TTCAGAATCCCAGGAG</td><td> 21</td><td> 1177</td>
<td> 729583</td><td> N/A</td><td> N/A</td><td> 9167</td><td> 9182</td><td> GACTGTGCTCCTATCG</td><td> 27</td><td> 1178</td>
<td> 729584</td><td> N/A</td><td> N/A</td><td> 9195</td><td> 9210</td><td> GACAATGCCCTGGGAA</td><td> 55</td><td> 1179</td>
<td> 729585</td><td> N/A</td><td> N/A</td><td> 9205</td><td> 9220</td><td> ACAGGGTAATGACAAT</td><td> 28</td><td> 1180</td>
<td> 729586</td><td> N/A</td><td> N/A</td><td> 9219</td><td> 9234</td><td> CGTGGGTCACACACAC</td><td> 39</td><td> 1181</td>
<td> 729587</td><td> N/A</td><td> N/A</td><td> 9233</td><td> 9248</td><td> AGCCCCAACTGCTGCG</td><td> 25</td><td> 1182</td>
<td> 729588</td><td> N/A</td><td> N/A</td><td> 9249</td><td> 9264</td><td> GGAGTCAGACCTACCA</td><td> 18</td><td> 1183</td>
<td> 729589</td><td> N/A</td><td> N/A</td><td> 9259</td><td> 9274</td><td> CCTTCTGCAGGGAGTC</td><td> 73</td><td> 1184</td>
<td> 729590</td><td> N/A</td><td> N/A</td><td> 9285</td><td> 9300</td><td> GCCCTTTGCCTCACTT</td><td> 17</td><td> 1185</td>
<td> 729591</td><td> N/A</td><td> N/A</td><td> 9324</td><td> 9339</td><td> CTCCGGTCCCAGCTCG</td><td> 6</td><td> 1186</td>
<td> 729592</td><td> N/A</td><td> N/A</td><td> 9334</td><td> 9349</td><td> AAGACCCTGCCTCCGG</td><td> 23</td><td> 1187</td>
<td> 729593</td><td> N/A</td><td> N/A</td><td> 9355</td><td> 9370</td><td> TAGCCTCAGTTTAGCT</td><td> 0</td><td> 1188</td>
<td> 729594</td><td> N/A</td><td> N/A</td><td> 9375</td><td> 9390</td><td> GAACTATGAGGCAACT</td><td> 10</td><td> 1189</td>
<td> 729595</td><td> N/A</td><td> N/A</td><td> 9385</td><td> 9400</td><td> TAACAGGCGAGAACTA</td><td> 9</td><td> 1190</td>
<td> 729596</td><td> N/A</td><td> N/A</td><td> 9427</td><td> 9442</td><td> GAAAGGAGGACAGGTT</td><td> 0</td><td> 1191</td>
<td> 729597</td><td> N/A</td><td> N/A</td><td> 9467</td><td> 9482</td><td> TGAAGGGACACCACCA</td><td> 31</td><td> 1192</td>
<td> 729598</td><td> N/A</td><td> N/A</td><td> 9533</td><td> 9548</td><td> TAGACCCCCAACCACC</td><td> 5</td><td> 1193</td>
<td> 729599</td><td> N/A</td><td> N/A</td><td> 9553</td><td> 9568</td><td> CCTATAGCTTCTCTGT</td><td> 51</td><td> 1194</td>
<td> 729600</td><td> N/A</td><td> N/A</td><td> 9567</td><td> 9582</td><td> AGGTACCTATGGTACC</td><td> 9</td><td> 1195</td>
<td> 729601</td><td> N/A</td><td> N/A</td><td> 9578</td><td> 9593</td><td> AGCCCCCTTCCAGGTA</td><td> 28</td><td> 1196</td>
<td> 729602</td><td> N/A</td><td> N/A</td><td> 9590</td><td> 9605</td><td> TAGCCTCCCATCAGCC</td><td> 11</td><td> 1197</td>
<td> 729603</td><td> N/A</td><td> N/A</td><td> 9602</td><td> 9617</td><td> CCTGGGCCACCCTAGC</td><td> 11</td><td> 1198</td>
<td> 729604</td><td> N/A</td><td> N/A</td><td> 9634</td><td> 9649</td><td> CGAACTGCCTCCCAGG</td><td> 7</td><td> 1199</td>
<td> 729605</td><td> N/A</td><td> N/A</td><td> 9645</td><td> 9660</td><td> TGCCACCTCCACGAAC</td><td> 39</td><td> 1200</td>
<td> 729606</td><td> N/A</td><td> N/A</td><td> 9655</td><td> 9670</td><td> CGGCTGTCAGTGCCAC</td><td> 17</td><td> 1201</td>
<td> 729607</td><td> N/A</td><td> N/A</td><td> 9683</td><td> 9698</td><td> CACTGCATCTACAGAG</td><td> 17</td><td> 1202</td>
<td> 729608</td><td> N/A</td><td> N/A</td><td> 9998</td><td> 10013</td><td> CAGCCATGGGTCCTTA</td><td> 18</td><td> 1203</td>
<td> 729609</td><td> N/A</td><td> N/A</td><td> 10009</td><td> 10024</td><td> TTCCCCGTGCCCAGCC</td><td> 0</td><td> 1204</td>
<td> 729610</td><td> N/A</td><td> N/A</td><td> 10025</td><td> 10040</td><td> AATCCCCCAGCACTGC</td><td> 22</td><td> 1205</td>
<td> 729611</td><td> N/A</td><td> N/A</td><td> 10041</td><td> 10056</td><td> TTGCCAATCCTACCCC</td><td> 31</td><td> 1206</td>
<td> 729612</td><td> N/A</td><td> N/A</td><td> 10073</td><td> 10088</td><td> CACCCAAGGGAGTCCA</td><td> 22</td><td> 1207</td>
<td> 729613</td><td> N/A</td><td> N/A</td><td> 10099</td><td> 10114</td><td> AGCCCCATCCGCCCTC</td><td> 3</td><td> 1208</td>
<td> 729614</td><td> N/A</td><td> N/A</td><td> 10157</td><td> 10172</td><td> GGCCCATCCCGTCCTT</td><td> 0</td><td> 1209</td>
<td> 729615</td><td> N/A</td><td> N/A</td><td> 10183</td><td> 10198</td><td> GGTCGGTCACTGTGGG</td><td> 8</td><td> 1210</td>
<td> 729616</td><td> N/A</td><td> N/A</td><td> 10581</td><td> 10596</td><td> CTTTGGGCCCTCACCA</td><td> 0</td><td> 1211</td>
<td> 729617</td><td> N/A</td><td> N/A</td><td> 10591</td><td> 10606</td><td> AGGATCACAGCTTTGG</td><td> 12</td><td> 1212</td>
<td> 729618</td><td> N/A</td><td> N/A</td><td> 10616</td><td> 10631</td><td> ATGCCCTGGGCAAGAG</td><td> 8</td><td> 1213</td>
<td> 729619</td><td> N/A</td><td> N/A</td><td> 10627</td><td> 10642</td><td> AGGCTGGAACCATGCC</td><td> 0</td><td> 1214</td>
<td> 729620</td><td> N/A</td><td> N/A</td><td> 10637</td><td> 10652</td><td> CCCTAGTCAGAGGCTG</td><td> 11</td><td> 1215</td>
<td> 729621</td><td> N/A</td><td> N/A</td><td> 10647</td><td> 10662</td><td> AAATCAAGGTCCCTAG</td><td> 2</td><td> 1216</td>
<td> 729622</td><td> N/A</td><td> N/A</td><td> 10658</td><td> 10673</td><td> GCTCTGCATCAAAATC</td><td> 7</td><td> 1217</td>
<td> 729623</td><td> N/A</td><td> N/A</td><td> 10780</td><td> 10795</td><td> ATGTACCTGTACAGTA</td><td> 14</td><td> 1218</td>
<td> 729624</td><td> N/A</td><td> N/A</td><td> 10800</td><td> 10815</td><td> CCGACTTTGGGATAGG</td><td> 15</td><td> 1219</td>
<td> 729625</td><td> N/A</td><td> N/A</td><td> 10810</td><td> 10825</td><td> CAAGCCAAGGCCGACT</td><td> 36</td><td> 1220</td>
<td> 729626</td><td> N/A</td><td> N/A</td><td> 10820</td><td> 10835</td><td> CCCCAGTTTTCAAGCC</td><td> 13</td><td> 1221</td>
<td> 729627</td><td> N/A</td><td> N/A</td><td> 10833</td><td> 10848</td><td> TAGCCCCAGGATTCCC</td><td> 5</td><td> 1222</td>
<td> 729628</td><td> N/A</td><td> N/A</td><td> 10883</td><td> 10898</td><td> AAGTTCACACTGCTCA</td><td> 38</td><td> 1223</td>
<td> 729629</td><td> N/A</td><td> N/A</td><td> 10914</td><td> 10929</td><td> CGGCTCTGAGCCTTGA</td><td> 0</td><td> 1224</td>
<td> 729630</td><td> N/A</td><td> N/A</td><td> 10933</td><td> 10948</td><td> AGTAATAGACCGCATT</td><td> 21</td><td> 1225</td>
<td> 729631</td><td> N/A</td><td> N/A</td><td> 10952</td><td> 10967</td><td> AGGACAGCCATCAGGG</td><td> 8</td><td> 1226</td>
<td> 729632</td><td> N/A</td><td> N/A</td><td> 10962</td><td> 10977</td><td> GCTGTGCATGAGGACA</td><td> 17</td><td> 1227</td>
<td> 729633</td><td> N/A</td><td> N/A</td><td> 10972</td><td> 10987</td><td> GCCAGATCCAGCTGTG</td><td> 0</td><td> 1228</td>
<td> 729634</td><td> N/A</td><td> N/A</td><td> 11023</td><td> 11038</td><td> ACCACCTGGGAGGCAA</td><td> 16</td><td> 1229</td>
<td> 729658</td><td> N/A</td><td> N/A</td><td> 8885</td><td> 8900</td><td> TCCCCTGAGAGGCTGC</td><td> 20</td><td> 1230</td>
<td> 729659</td><td> N/A</td><td> N/A</td><td> 9543</td><td> 9558</td><td> CTCTGTATACTAGACC</td><td> 64</td><td> 1231</td>
<td> 729660</td><td> N/A</td><td> N/A</td><td> 10134</td><td> 10149</td><td> ACGCCTCCCCATTCTG</td><td> 6</td><td> 1232</td>
<td> 729661</td><td> N/A</td><td> N/A</td><td> 10894</td><td> 10909</td><td> CTCTGGCCGCCAAGTT</td><td> 5</td><td> 1233</td>
Table 17
Inhibition of IRF5 RNA by 3-10-3 cEt gapmers targeting SEQ ID NO: 3
<td> Compound Number</td><td> SEQ ID NO: 3 Start Site</td><td> SEQ ID NO: 3 Stop Site</td><td> Sequence (5' to 3')</td><td> IRF5 (/«Inhibition)</td><td> SEQ ID NO</td>
<td> 728399</td><td> 96</td><td> 111</td><td> TCTGTCTGCGGTGCGC</td><td> 26</td><td> 1234</td>
<td> 728400</td><td> 98</td><td> 113</td><td> GGTCTGTCTGCGGTGC</td><td> 23</td><td> 1235</td>
<td> 728539</td><td> 591</td><td> 606</td><td> GCATCTGTGAGGCTCA</td><td> 21</td><td> 1236</td>
<td> 728540</td><td> 593</td><td> 608</td><td> CTGCATCTGTGAGGCT</td><td> 30</td><td> 1237</td>
<td> 728541</td><td> 595</td><td> 610</td><td> CACTGCATCTGTGAGG</td><td> 8</td><td> 1238</td>
<td> 728542</td><td> 597</td><td> 612</td><td> TGCACTGCATCTGTGA</td><td> 20</td><td> 1239</td>
<td> 728543</td><td> 599</td><td> 614</td><td> ACTGCACTGCATCTGT</td><td> 12</td><td> 1240</td>
Example 2: Antisense inhibition of human IRF5 in KARPAS-229 cells by modified oligonucleotides
In the second stage of the screening, modified oligonucleotides were designed to sites adjacent to the most active leads/sites from the first stage of screening described above. Briefly, active leads from the first phase of the screening were microwalked until previously tested or rejected sites were approximately reached. Several different chemistry modifications were tested, which are specified in the Chemistry Notation column of the tables below, wherein the notation “d” refers to a 2’-deoxyribose sugar, the notation “s” refers to a phosphorothioate intemucleoside linkage, the notation “k” refers to a cEt modified sugar, and the notation “<sup>m</sup>C” refers to a 5-methyl cytosine.
Cultured KARPAS-229 cells at a density of 10,000 cells per well were treated using free uptake with 4,000 nM of modified oligonucleotide. After a treatment period of approximately 48 hours, RNA was isolated from the cells and IRF5 mRNA levels were measured by quantitative real-time RTPCR. Human primer probe set RTS4524 (forward sequence TTCGAGATCTTCTTCTGCTTTGG, designated herein as SEQ ID NO: 14; reverse sequence GCACCACCTGTACAGTAATGAGCTT; designated herein as SEQ ID NO: 15; probe sequence CCTGACCGCAAACCCCGAGAGAA, designated herein as SEQ ID NO: 16) was used to measure mRNA levels. IRF5 mRNA levels were adjusted according to total RNA content, as measured by RIBOGREEN®. Results are presented as percent inhibition of IRF5 relative to untreated control cells. As used herein, a value of ‘0’ indicates that treatment with the modified oligonucleotide did not inhibit IRF5 mRNA levels. ‘N/A’ indicates that the modified oligonucleotide does not target that gene sequence with 100% complementarity.
Table 18
Inhibition of IRF5 mRNA by modified oligonucleotides targeting SEQ ID NO: 1 and 2
<td> Compound Number</td><td> SEQ ID NO: 1 Start Site</td><td> SEQ ID NO: 1 Stop Site</td><td> SEQ ID NO: 2 Start Site</td><td> SEQ ID NO: 2 Stop Site</td><td> Sequence (5' to 3')</td><td> Chemistry Notation</td><td> (% Inhibition)</td><td> SEQ ID NO</td>
<td> 666178</td><td> N/A</td><td> N/A</td><td> 6540</td><td> 6555</td><td> GCATTCCATAT ACACA</td><td> Gks<sup>m</sup>CksAksTdsTds<sup>m</sup>C ds<sup>m</sup>C<sub>ds</sub>A<sub>ds</sub>T<sub>ds</sub>A<sub>ds</sub>T<sub>ds</sub>A ds^dsAks^ksAk</td><td> 21</td><td> 1003</td>
<td> 728708</td><td> 1308</td><td> 1323</td><td> 10541</td><td> 10556</td><td> AGCTTGGTCTT GACCT</td><td> AksGks<sup>m</sup>CksT<sub>ds</sub>T<sub>ds</sub>G<sub>ds</sub> /~י τ τ τ /~י vJdslds Cds 1 ds 1 ds<Jds A<sub>ds</sub><sup>m</sup>Cks<sup>m</sup>CksT<sub>k</sub></td><td> 48</td><td> 436</td>
<td> 728894</td><td> 1764</td><td> 1779</td><td> 11329</td><td> 11344</td><td> CACATCTCCAC ATCAG</td><td> “CksAks^ksAdsTd«” τ me mr λ m Cdslds Cds CdsAds Cd<sub>S</sub>A<sub>ds</sub>T<sub>ds</sub><sup>m</sup>CksAk<sub>S</sub>Gk</td><td> 45</td><td> 633</td>
<td> 729213</td><td> N/A</td><td> N/A</td><td> 6539</td><td> 6554</td><td> CATTCCATATA CACAC</td><td> me m ידי ידי λ CksAks 1 ks 1 ds ^ds Cd<sub>S</sub>A<sub>ds</sub>T<sub>ds</sub>A<sub>ds</sub>T<sub>ds</sub>A<sub>ds</sub><sup>m</sup> CdsA<sub>ds</sub><sup>m</sup>CksA<sub>k</sub>s<sup>m</sup>Ck</td><td> 28</td><td> 1006</td>
<td> 729476</td><td> N/A</td><td> N/A</td><td> 6549</td><td> 6564</td><td> TCCAATTTTGC ATTCC</td><td> TjZCjZCksAdsAdsT dsTd<sub>S</sub>T<sub>ds</sub>T<sub>ds</sub>Gds<sup>m</sup>Cd<sub>S</sub>A τ τ me me ds 1 ds<sup>1</sup> ks ^ks Vk</td><td> 79</td><td> 1047</td>
<td> 785370</td><td> 1762</td><td> 1777</td><td> 11327</td><td> 11342</td><td> CATCTCCACAT CAGTC</td><td> λ יד τ m CksAds 1 ds ^ds 1 ds Cds<sup>m</sup>CdsAds<sup>m</sup>CdsAdsT ds<sup>m</sup>CkSA־<sub>s</sub>Gk<sub>S</sub>T<sub>es</sub><sup>m</sup>Ck</td><td> 25</td><td> 631</td>
<td> 785371</td><td> 1764</td><td> 1779</td><td> 11329</td><td> 11344</td><td> CACATCTCCAC ATCAG</td><td><sup>m</sup>CksAds<sup>m</sup>CdsA<sub>ds</sub>T<sub>ds</sub><sup>m </sup>τ me me a m Cdslds Cds CdsAds CdsAksTeS<sup>m</sup>CksAeSGk</td><td> 15</td><td> 633</td>
<td> 785392</td><td> N/A</td><td> N/A</td><td> 6539</td><td> 6554</td><td> CATTCCATATA CACAC</td><td> me m יד יד a CksAds 1 ds 1 ds ^ds Cd<sub>S</sub>A<sub>ds</sub>T<sub>ds</sub>A<sub>ds</sub>T<sub>ds</sub>A<sub>ds</sub><sup>m</sup> p Λ A me '-'ks-^'-es '-׳ks^-es ^k</td><td> 31</td><td> 1006</td>
<td> 785393</td><td> N/A</td><td> N/A</td><td> 6540</td><td> 6555</td><td> GCATTCCATAT ACACA</td><td> Gks<sup>m</sup>CdsAdsTdsTds<sup>m</sup>C ds<sup>m</sup>CdSA<sub>ds</sub>T<sub>ds</sub>A<sub>ds</sub>T<sub>ds</sub>A ^CesAks^esAk</td><td> 39</td><td> 1003</td>
<td> 785394</td><td> N/A</td><td> N/A</td><td> 6547</td><td> 6562</td><td> CAATTTTGCAT TCCAT</td><td><sup>m</sup>CksAdsAdsTdsTdsTds TdSGds<sup>m</sup>CdsA<sub>ds</sub>T<sub>ds</sub>Tks <sup>m</sup>CeS<sup>m</sup>CksA־sTk</td><td> 21</td><td> 1241</td>
<td> 785395</td><td> N/A</td><td> N/A</td><td> 6549</td><td> 6564</td><td> TCCAATTTTGC ATTCC</td><td> TksTds’TdsAdsAdsT dsTd<sub>S</sub>T<sub>ds</sub>T<sub>ds</sub>Gds<sup>m</sup>Cd<sub>S</sub>A τ τ me me ks<sup>1</sup> es<sup>1</sup> ks Ves Vk</td><td> 37</td><td> 1047</td>
<td> 785425</td><td> 1762</td><td> 1777</td><td> 11327</td><td> 11342</td><td> CATCTCCACAT CAGTC</td><td> a יד me τ m CksAds 1 ds ^ds 1 ds Cds<sup>m</sup>CdsAds<sup>m</sup>CdsAdsT ks<sup>m</sup>CesAksGesTks<sup>m</sup>Ce</td><td> 32</td><td> 631</td>
<td> 785426</td><td> 1764</td><td> 1779</td><td> 11329</td><td> 11344</td><td> CACATCTCCAC ATCAG</td><td><sup>m</sup>CksAds<sup>m</sup>CdsA<sub>ds</sub>T<sub>ds</sub><sup>m </sup>Cdslds Cds CdsAds CksAe<sub>S</sub>Tks<sup>m</sup>CesAksGe</td><td> 2</td><td> 633</td>
<td> 785447</td><td> N/A</td><td> N/A</td><td> 6539</td><td> 6554</td><td> CATTCCATATA CACAC</td><td> m יד יד a CksAds 1 ds 1 ds ^ds Cd<sub>S</sub>A<sub>ds</sub>T<sub>ds</sub>A<sub>ds</sub>T<sub>ds</sub>Ak<sub>S</sub><sup>m</sup> CesAks^esA^Ce</td><td> 7</td><td> 1006</td>
<td> 785448</td><td> N/A</td><td> N/A</td><td> 6540</td><td> 6555</td><td> GCATTCCATAT ACACA</td><td> Gks<sup>m</sup>CdsAdsTdsTds<sup>m</sup>C ds<sup>m</sup>CdsAdsTdsAdsTksA ־s<sup>m</sup>CkSA<sub>es</sub><sup>m</sup>CksA־</td><td> 34</td><td> 1003</td>
<td> 785449</td><td> N/A</td><td> N/A</td><td> 6547</td><td> 6562</td><td> CAATTTTGCAT TCCAT</td><td><sup>m</sup>CksA<sub>ds</sub>A<sub>ds</sub>T<sub>ds</sub>T<sub>ds</sub>T<sub>ds</sub> T<sub>ds</sub>G<sub>ds</sub><sup>m</sup>C<sub>ds</sub>A<sub>ds</sub>TksTe<sub>S</sub> mp mp a τ '-'ks '-׳es^'ks a e</td><td> 19</td><td> 1241</td>
<td> 785450</td><td> N/A</td><td> N/A</td><td> 6549</td><td> 6564</td><td> TCCAATTTTGC ATTCC</td><td> Tks<sup>m</sup>Cds<sup>m</sup>CdsA<sub>ds</sub>A<sub>ds</sub>T <sub>d</sub>sT<sub>ds</sub>T<sub>ds</sub>T<sub>ds</sub>G<sub>ds</sub><sup>m</sup>CksA<sub>e</sub> s 1 ks A es Vks Ve</td><td> 6</td><td> 1047</td>
<td> 785471</td><td> 1764</td><td> 1779</td><td> 11329</td><td> 11344</td><td> CACATCTCCAC ATCAG</td><td> mp a Δ T <sup>m</sup> '-׳ks^'es '-׳ks^ds a ds mr λ m י־/1מ τ י/ Cdslds Cds CdsAds C<sub>ds</sub>A<sub>ds</sub>T<sub>es</sub><sup>m</sup>CesAksGk</td><td> 26</td><td> 633</td>
<td> 785483</td><td> N/A</td><td> N/A</td><td> 6539</td><td> 6554</td><td> CATTCCATATA CACAC</td><td> nip ATT <sup>m</sup>C <sup>m </sup>V-ks^es A ks A ds ^ds C<sub>ds</sub>A<sub>ds</sub>T<sub>ds</sub>A<sub>ds</sub>T<sub>ds</sub>A<sub>ds</sub><sup>m </sup>CdsAes<sup>m</sup>CesAkS<sup>m</sup>Ck</td><td> 24</td><td> 1006</td>
<td> 785484</td><td> N/A</td><td> N/A</td><td> 6540</td><td> 6555</td><td> GCATTCCATAT ACACA</td><td> G<sub>ks</sub><sup>m</sup>CeSAksTdsTds<sup>m</sup>Cd s<sup>m</sup>CdsAdsTdsAdsTdsAd s<sup>m</sup>CesAcs<sup>m</sup>C<sub>k</sub>sA<sub>k</sub></td><td> 48</td><td> 1003</td>
<td> 785485</td><td> N/A</td><td> N/A</td><td> 6549</td><td> 6564</td><td> TCCAATTTTGC ATTCC</td><td> Tks<sup>m</sup>Ces<sup>m</sup>CksAdsAdsTd sTdsTdsTdsGds<sup>m</sup>CdsA<sub>d</sub>s י־/111 τ mp יך A es A es '-'ks Me</td><td> 76</td><td> 1047</td>
<td> 785513</td><td> 1763</td><td> 1778</td><td> 11328</td><td> 11343</td><td> ACATCTCCAC ATCAGT</td><td> Aks<sup>m</sup>CksAdsTds<sup>m</sup>CdsT <sub>ds</sub><sup>m</sup>Cds<sup>m</sup>CdsA<sub>ds</sub><sup>m</sup>CdsAd sTds<sup>m</sup>CksAesGksTe</td><td> 36</td><td> 632</td>
<td> 785514</td><td> 1764</td><td> 1779</td><td> 11329</td><td> 11344</td><td> CACATCTCCAC ATCAG</td><td> “CksAks^dsAdsTd“ τ י־/1מ mr λ m Cdslds Cds CdsAds C<sub>ds</sub>A<sub>ds</sub>Tks<sup>m</sup>CesAksGe</td><td> 23</td><td> 633</td>
<td> 785535</td><td> N/A</td><td> N/A</td><td> 6539</td><td> 6554</td><td> CATTCCATATA CACAC</td><td> mp ATT <sup>m</sup>C <sup>m </sup>'-ks^'ks A ds A ds '-'ds C<sub>ds</sub>A<sub>ds</sub>T<sub>ds</sub>A<sub>ds</sub>T<sub>ds</sub>A<sub>ds</sub><sup>m </sup>CdsAks^esAks^e</td><td> 30</td><td> 1006</td>
<td> 785536</td><td> N/A</td><td> N/A</td><td> 6540</td><td> 6555</td><td> GCATTCCATAT ACACA</td><td> Gks<sup>m</sup>CksAdsTdsTds<sup>m</sup>C ds<sup>m</sup>CdsAdsTdsAdsTdsA ds<sup>m</sup>CksA־<sub>s</sub>'C<sub>k</sub>sAe</td><td> 37</td><td> 1003</td>
<td> 785537</td><td> N/A</td><td> N/A</td><td> 6548</td><td> 6563</td><td> CCAATTTTGCA TTCCA</td><td><sup>m</sup>Cks<sup>m</sup>CksAdsAdsTdsT dsTdsTdsGds<sup>m</sup>CdsA<sub>ds</sub>T T mp mp A ds A ks '-'es '-'ks-^'-e</td><td> 57</td><td> 1242</td>
<td> 785538</td><td> N/A</td><td> N/A</td><td> 6549</td><td> 6564</td><td> TCCAATTTTGC ATTCC</td><td> Tks^ks^dsAdsAdsT <sub>d</sub>sT<sub>ds</sub>T<sub>ds</sub>T<sub>ds</sub>G<sub>ds</sub><sup>m</sup>C<sub>ds</sub>A τ τ mp mp dsAksAes '-'ks '-'e</td><td> 40</td><td> 1047</td>
<td> 785558</td><td> 1763</td><td> 1778</td><td> 11328</td><td> 11343</td><td> ACATCTCCAC ATCAGT</td><td> Aks<sup>m</sup>CksAdsTds<sup>m</sup>CdsT <sub>ds</sub><sup>m</sup>Cds<sup>m</sup>CdsA<sub>ds</sub><sup>m</sup>C<sub>ds</sub>A־ <sub>s</sub>T<sub>es</sub><sup>m</sup>CesAesGksTk</td><td> 24</td><td> 632</td>
<td> 785570</td><td> N/A</td><td> N/A</td><td> 6539</td><td> 6554</td><td> CATTCCATATA CACAC</td><td> mp ATT <sup>m</sup>C <sup>m </sup>'-ks^'ks A ds A ds '-'ds C<sub>ds</sub>A<sub>ds</sub>T<sub>ds</sub>A<sub>ds</sub>T<sub>ds</sub>A<sub>e</sub>s<sup>m </sup>CeSAes<sup>m</sup>CeSA<sub>ks</sub><sup>m</sup>Ck</td><td> 21</td><td> 1006</td>
<td> 785571</td><td> N/A</td><td> N/A</td><td> 6548</td><td> 6563</td><td> CCAATTTTGCA TTCCA</td><td><sup>m</sup>Cks<sup>m</sup>CksAdsAdsTdsT dsTdsTdsGds<sup>m</sup>CdsA<sub>es</sub>Te <sub>s</sub>T<sub>es</sub><sup>m</sup>CeS<sup>m</sup>CksAk</td><td> 48</td><td> 1242</td>
<td> 785609</td><td> 1762</td><td> 1777</td><td> 11327</td><td> 11342</td><td> CATCTCCACAT CAGTC</td><td> a τ י־/1מ τ m CksAks 1 ds '-'ds 1 ds C<sub>ds</sub><sup>m</sup>CdsAds<sup>m</sup>CdsA<sub>ds</sub>T ^CesAksGesT^Ck</td><td> 23</td><td> 631</td>
<td> 785610</td><td> 1763</td><td> 1778</td><td> 11328</td><td> 11343</td><td> ACATCTCCAC ATCAGT</td><td> A<sub>ks</sub><sup>m</sup>CkSAdsTds<sup>m</sup>CdsT ds<sup>m</sup>Cds<sup>m</sup>CdsA<sub>ds</sub><sup>m</sup>CdsAk sTeS<sup>m</sup>CksAesGksTk</td><td> 15</td><td> 632</td>
<td> 785611</td><td> 1764</td><td> 1779</td><td> 11329</td><td> 11344</td><td> CACATCTCCAC ATCAG</td><td> “CksAks^dsAdsTd«” /י τ nir mr λ m Cdslds Cds CdsAds CksAe<sub>S</sub>Tks<sup>m</sup>CesAk<sub>s</sub>Gk</td><td> 17</td><td> 633</td>
<td> 785640</td><td> N/A</td><td> N/A</td><td> 6539</td><td> 6554</td><td> CATTCCATATA CACAC</td><td> mr m ידי ידי λ CksAks 1 ds 1 ds '-'ds C<sub>ds</sub>A<sub>ds</sub>T<sub>ds</sub>A<sub>ds</sub>T<sub>ds</sub>Ak<sub>S</sub><sup>m</sup> CesAks<sup>m</sup>CesAks<sup>m</sup>Ck</td><td> 17</td><td> 1006</td>
<td> 785641</td><td> N/A</td><td> N/A</td><td> 6540</td><td> 6555</td><td> GCATTCCATAT ACACA</td><td> Gks<sup>m</sup>CksAdsTdsTds<sup>m</sup>C ds<sup>m</sup>CdsAdsTdsAdsTksA ־s<sup>m</sup>CkSAe<sub>S</sub><sup>m</sup>C<sub>ks</sub>Ak</td><td> 0</td><td> 1003</td>
<td> 785642</td><td> N/A</td><td> N/A</td><td> 6547</td><td> 6562</td><td> CAATTTTGCAT TCCAT</td><td><sup>m</sup>CksAksAdsTdsTdsTds TdsGds<sup>m</sup>CdsA<sub>ds</sub>TksTe<sub>S </sub><sup>m</sup>Cks<sup>m</sup>CesAksT<sub>k</sub></td><td> 32</td><td> 1241</td>
<td> 785643</td><td> N/A</td><td> N/A</td><td> 6548</td><td> 6563</td><td> CCAATTTTGCA TTCCA</td><td><sup>m</sup>Cks<sup>m</sup>CksAdsAdsTdsT dsTdSTdsGds<sup>m</sup>CdsAk<sub>S</sub>T<sub>e s</sub>T<sub>ks</sub><sup>m</sup>CeS<sup>m</sup>CkSAk</td><td> 39</td><td> 1242</td>
<td> 785644</td><td> N/A</td><td> N/A</td><td> 6549</td><td> 6564</td><td> TCCAATTTTGC ATTCC</td><td> Tks^ks^dsAdsAdsT dsTd<sub>S</sub>T<sub>ds</sub>T<sub>ds</sub>Gds<sup>m</sup>CksA<sub>e </sub>יך τ me me s^ks^es Vks Vk</td><td> 15</td><td> 1047</td>
<td> 785667</td><td> 1763</td><td> 1778</td><td> 11328</td><td> 11343</td><td> ACATCTCCAC ATCAGT</td><td> Aks<sup>m</sup>CksAdsTds<sup>m</sup>CdsT ds<sup>m</sup>Cds<sup>m</sup>CdsAds<sup>m</sup>CdsAd sTeS<sup>m</sup>CesAesGksTk</td><td> 41</td><td> 632</td>
<td> 785679</td><td> N/A</td><td> N/A</td><td> 6539</td><td> 6554</td><td> CATTCCATATA CACAC</td><td> me ATT <sup>m</sup> '-ks^ks 1 ds<sup>1</sup> ds '-'ds Cd<sub>S</sub>A<sub>ds</sub>T<sub>ds</sub>A<sub>ds</sub>T<sub>ds</sub>A<sub>ds</sub><sup>m </sup>CeSAes<sup>m</sup>CeSA<sub>ks</sub><sup>m</sup>Ck</td><td> 21</td><td> 1006</td>
<td> 785680</td><td> N/A</td><td> N/A</td><td> 6548</td><td> 6563</td><td> CCAATTTTGCA TTCCA</td><td><sup>m</sup>Cks<sup>m</sup>CksAdsAdsTdsT dsTdsTdsGds<sup>m</sup>CdsAdsTe sT<sub>es</sub><sup>m</sup>CeS<sup>m</sup>CksAk</td><td> 30</td><td> 1242</td>
<td> 785697</td><td> 1763</td><td> 1778</td><td> 11328</td><td> 11343</td><td> ACATCTCCAC ATCAGT</td><td> Aks<sup>m</sup>CksAdsTds<sup>m</sup>CdsT ds<sup>m</sup>Cds<sup>m</sup>CdsAds<sup>m</sup>C<sub>ds</sub>A<sub>d </sub>sTksH'CdsAksGdsTk</td><td> 28</td><td> 632</td>
<td> 785709</td><td> N/A</td><td> N/A</td><td> 6539</td><td> 6554</td><td> CATTCCATATA CACAC</td><td> mr m יד יד λ CksAks 1 ds 1 ds '-'ds Cd<sub>S</sub>A<sub>ds</sub>T<sub>ds</sub>A<sub>ds</sub>T<sub>ds</sub>A<sub>ds</sub><sup>m </sup>CksAds<sup>m</sup>CksA<sub>ds</sub><sup>m</sup>Ck</td><td> 25</td><td> 1006</td>
<td> 785710</td><td> N/A</td><td> N/A</td><td> 6548</td><td> 6563</td><td> CCAATTTTGCA TTCCA</td><td><sup>m</sup>Cks<sup>m</sup>CksAdsAdsTdsT dsTdSTdsGds<sup>m</sup>CdSA<sub>ds</sub>T τ me me a ks<sup>1</sup> ds '-'ks '-'ds<sup>/</sup>'k</td><td> 42</td><td> 1242</td>
<td> 785738</td><td> 1763</td><td> 1778</td><td> 11328</td><td> 11343</td><td> ACATCTCCAC ATCAGT</td><td> Aks<sup>m</sup>CksAdsTds<sup>m</sup>CdsT ds<sup>m</sup>Cds<sup>m</sup>CdsAds<sup>m</sup>C<sub>d</sub>sA<sub>d s</sub>Tks<sup>m</sup>CesAksGesTk</td><td> 16</td><td> 632</td>
<td> 785739</td><td> 1764</td><td> 1779</td><td> 11329</td><td> 11344</td><td> CACATCTCCAC ATCAG</td><td> “CksAks^dsAdsTds<sup>1</sup> יד me me λ m Cdslds Cds CdsAds CdsAksTeS<sup>m</sup>CksAeSGk</td><td> 22</td><td> 633</td>
<td> 785760</td><td> N/A</td><td> N/A</td><td> 6539</td><td> 6554</td><td> CATTCCATATA CACAC</td><td> me m יד יד λ CksAks 1 ds 1 ds '-'ds Cd<sub>S</sub>A<sub>ds</sub>T<sub>ds</sub>A<sub>ds</sub>T<sub>ds</sub>A<sub>ds</sub><sup>m</sup> Ck<sub>S</sub>A<sub>es</sub><sup>m</sup>Ck<sub>S</sub>A<sub>es</sub><sup>m</sup>Ck</td><td> 54</td><td> 1006</td>
<td> 785761</td><td> N/A</td><td> N/A</td><td> 6540</td><td> 6555</td><td> GCATTCCATAT ACACA</td><td> Gks<sup>m</sup>CksAdsTdsTds<sup>m</sup>C ds<sup>m</sup>CdSA<sub>ds</sub>T<sub>ds</sub>A<sub>ds</sub>T<sub>ds</sub>A ^CesAks^esAk</td><td> 2</td><td> 1003</td>
<td> 785762</td><td> N/A</td><td> N/A</td><td> 6548</td><td> 6563</td><td> CCAATTTTGCA TTCCA</td><td><sup>m</sup>Cks<sup>m</sup>CksAdsAdsTdsT dsTdsTdsGds<sup>m</sup>CdsA<sub>ds</sub>T <sub>ks</sub>T<sub>es</sub><sup>m</sup>Cks<sup>m</sup>CesAk</td><td> 11</td><td> 1242</td>
<td> 785763</td><td> N/A</td><td> N/A</td><td> 6549</td><td> 6564</td><td> TCCAATTTTGC ATTCC</td><td> TksTksTdsAdsAdsT dsTd<sub>S</sub>T<sub>ds</sub>T<sub>ds</sub>Gds<sup>m</sup>Cd<sub>S</sub>A יך יך ks<sup>1</sup> es<sup>1</sup> ks Ves Vk</td><td> 29</td><td> 1047</td>
<td> 785784</td><td> 1764</td><td> 1779</td><td> 11329</td><td> 11344</td><td> CACATCTCCAC ATCAG</td><td> “CksAks^ksAdsTds<sup>1</sup> Cdslds Cds CdsAds CdSAksTds<sup>m</sup>CksAdsGk</td><td> 39</td><td> 633</td>
<td> 785796</td><td> N/A</td><td> N/A</td><td> 6539</td><td> 6554</td><td> CATTCCATATA CACAC</td><td> me ATT <sup>m</sup> '-ks^ks 1 ks<sup>1</sup> ds '-'ds Cd<sub>S</sub>A<sub>ds</sub>T<sub>ds</sub>A<sub>ds</sub>T<sub>ds</sub>A<sub>ds</sub><sup>m </sup>CksAds<sup>m</sup>CksAds<sup>m</sup>Ck</td><td> 40</td><td> 1006</td>
<td> 785797</td><td> N/A</td><td> N/A</td><td> 6540</td><td> 6555</td><td> GCATTCCATAT ACACA</td><td> G<sub>ks</sub><sup>m</sup>CksAksTdsTds<sup>m</sup>C ds<sup>m</sup>CdSA<sub>ds</sub>T<sub>ds</sub>A<sub>ds</sub>T<sub>ds</sub>A ks<sup>m</sup>CdsAks<sup>m</sup>CdsAk</td><td> 0</td><td> 1003</td>
<td> 785798</td><td> N/A</td><td> N/A</td><td> 6549</td><td> 6564</td><td> TCCAATTTTGC ATTCC</td><td> TjZCjZCksAdsAdsT dsTd<sub>S</sub>T<sub>ds</sub>T<sub>ds</sub>G<sub>ds</sub><sup>m</sup>C<sub>ds</sub>A τ τ m/־x m/־x ks 1 ds 1 ks '-'ds '-'k</td><td> 32</td><td> 1047</td>
<td> 785826</td><td> 1763</td><td> 1778</td><td> 11328</td><td> 11343</td><td> ACATCTCCAC ATCAGT</td><td> Aks<sup>m</sup>CksAkSTds<sup>m</sup>CdsT ds<sup>m</sup>Cds<sup>m</sup>CdsAds<sup>m</sup>C<sub>d</sub>sA<sub>d s</sub>Tks<sup>m</sup>CesAksGesTk</td><td> 14</td><td> 632</td>
<td> 785827</td><td> 1764</td><td> 1779</td><td> 11329</td><td> 11344</td><td> CACATCTCCAC ATCAG</td><td> “CksAks^ksAdsTds<sup>1</sup> Cdslds Cds CdsAds CdsAksTeS<sup>m</sup>CksAeSGk</td><td> 43</td><td> 633</td>
<td> 785848</td><td> N/A</td><td> N/A</td><td> 6539</td><td> 6554</td><td> CATTCCATATA CACAC</td><td> me ATT <sup>m</sup> '-ks^'ks 1 ks<sup>1</sup> ds '-'ds Cd<sub>S</sub>A<sub>ds</sub>T<sub>ds</sub>A<sub>ds</sub>T<sub>ds</sub>A<sub>ds</sub><sup>m </sup>CkSAes<sup>m</sup>CkSA<sub>es</sub><sup>m</sup>Ck</td><td> 32</td><td> 1006</td>
<td> 785849</td><td> N/A</td><td> N/A</td><td> 6540</td><td> 6555</td><td> GCATTCCATAT ACACA</td><td> G<sub>ks</sub><sup>m</sup>CksAksTdsTds<sup>m</sup>C ds<sup>m</sup>CdSA<sub>ds</sub>T<sub>ds</sub>A<sub>ds</sub>T<sub>ds</sub>A ^CesAks^esAk</td><td> 0</td><td> 1003</td>
<td> 785850</td><td> N/A</td><td> N/A</td><td> 6548</td><td> 6563</td><td> CCAATTTTGCA TTCCA</td><td><sup>m</sup>Cks<sup>m</sup>CksAksAdsTdsT dsTdSTdsGds<sup>m</sup>CdsA<sub>ds</sub>T <sub>ks</sub>T<sub>es</sub><sup>m</sup>Cks<sup>m</sup>CeSAk</td><td> 42</td><td> 1242</td>
<td> 785851</td><td> N/A</td><td> N/A</td><td> 6549</td><td> 6564</td><td> TCCAATTTTGC ATTCC</td><td> Tks^ks^ksAdsAdsT dsTd<sub>S</sub>T<sub>ds</sub>T<sub>ds</sub>Gds<sup>m</sup>Cd<sub>S</sub>A τ τ ks<sup>1</sup> es<sup>1</sup> ks *-׳es Me</td><td> 51</td><td> 1047</td>
<td> 785872</td><td> 1764</td><td> 1779</td><td> 11329</td><td> 11344</td><td> CACATCTCCAC ATCAG</td><td> “CksAks^ksAdsTds<sup>1</sup> Cdslds Cds CdsAds CdsAdsTks<sup>m</sup>CesAksGe</td><td> 38</td><td> 633</td>
<td> 785884</td><td> N/A</td><td> N/A</td><td> 6539</td><td> 6554</td><td> CATTCCATATA CACAC</td><td> m י־/1מ ידי ידי Λ CksAks 1 ks 1 ds '-'ds Cd<sub>S</sub>A<sub>ds</sub>T<sub>ds</sub>A<sub>ds</sub>T<sub>ds</sub>A<sub>ds</sub><sup>m</sup> CdsAks’TesAks’Te</td><td> 28</td><td> 1006</td>
<td> 785885</td><td> N/A</td><td> N/A</td><td> 6540</td><td> 6555</td><td> GCATTCCATAT ACACA</td><td> G<sub>ks</sub><sup>m</sup>CksAksTdsTds<sup>m</sup>C ds<sup>m</sup>CdSA<sub>ds</sub>T<sub>ds</sub>A<sub>ds</sub>T<sub>ds</sub>A ds<sup>m</sup>CkSA־s<sup>m</sup>CkSAe</td><td> 45</td><td> 1003</td>
<td> 785886</td><td> N/A</td><td> N/A</td><td> 6549</td><td> 6564</td><td> TCCAATTTTGC ATTCC</td><td> Tks^ks^ksAdsAdsT dsTd<sub>S</sub>T<sub>ds</sub>T<sub>ds</sub>G<sub>ds</sub><sup>m</sup>C<sub>ds</sub>A ds Iks les '-'ks '-׳e</td><td> 14</td><td> 1047</td>
<td> 785914</td><td> 1763</td><td> 1778</td><td> 11328</td><td> 11343</td><td> ACATCTCCAC ATCAGT</td><td> Aks<sup>m</sup>CksAkSTds<sup>m</sup>CdsT ds<sup>m</sup>Cds<sup>m</sup>CdsAds<sup>m</sup>C<sub>d</sub>sA<sub>d s</sub>T<sub>ds</sub><sup>m</sup>CksAksGksTe</td><td> 11</td><td> 632</td>
<td> 785915</td><td> 1764</td><td> 1779</td><td> 11329</td><td> 11344</td><td> CACATCTCCAC ATCAG</td><td> “CksAks^ksAdsTd«” p יך mp mp a m '-'ds<sup>1</sup> ds '-'ds '-'ds-^-ds CdsAdsTksH'CksAksGe</td><td> 25</td><td> 633</td>
<td> 785936</td><td> N/A</td><td> N/A</td><td> 6539</td><td> 6554</td><td> CATTCCATATA CACAC</td><td> m/-' m ידי ידי λ CksAks 1 ks 1 ds '-'ds CdsAdsTdsAdsTdsAds<sup>111</sup> p A mp A mp '-'ds^'ks '-'ks^'ks '-'e</td><td> 39</td><td> 1006</td>
<td> 785937</td><td> N/A</td><td> N/A</td><td> 6540</td><td> 6555</td><td> GCATTCCATAT ACACA</td><td> Gks<sup>m</sup>CksAksTdSTds<sup>m</sup>C ds<sup>m</sup>CdsAdsTdsAdsTdSA ds<sup>ln</sup>CksAks<sup>m</sup>CksAe</td><td> 25</td><td> 1003</td>
<td> 785938</td><td> N/A</td><td> N/A</td><td> 6548</td><td> 6563</td><td> CCAATTTTGCA TTCCA</td><td><sup>m</sup>Cks<sup>m</sup>CksA<sub>ks</sub>A<sub>ds</sub>T<sub>ds</sub>T dsTdsTdsGds<sup>m</sup>CdsAd<sub>s</sub>T dsTksTksTksAe</td><td> 80</td><td> 1242</td>
<td> 785939</td><td> N/A</td><td> N/A</td><td> 6549</td><td> 6564</td><td> TCCAATTTTGC ATTCC</td><td> T^ks^ksAdsAdsT dsTdsTd<sub>s</sub>TdsGds<sup>m</sup>CdsA mp mp יך יך<sup>1</sup> ds Iks Iks '-'ks '-'e</td><td> 7</td><td> 1047</td>
<td> 786505</td><td> N/A</td><td> N/A</td><td> 6546</td><td> 6561</td><td> AATTTTGCATT CCATA</td><td> AksAksTksTdsTdsTdsG mp ATT <sup>m</sup>p ds '-'ds-^-ds<sup>1</sup> ds<sup>1</sup> ds '-'ds <sup>m</sup>CdsAk<sub>S</sub>T<sub>ks</sub>A<sub>k</sub></td><td> 41</td><td> 1243</td>
<td> 786506</td><td> N/A</td><td> N/A</td><td> 6547</td><td> 6562</td><td> CAATTTTGCAT TCCAT</td><td> ™CksAksAksTdsTdsTds TdsGds<sup>m</sup>CdsAdSTdSTdS <sup>m</sup>Cds<sup>m</sup>Ck<sub>S</sub>A<sub>ks</sub>Tk</td><td> 52</td><td> 1241</td>
<td> 786507</td><td> N/A</td><td> N/A</td><td> 6548</td><td> 6563</td><td> CCAATTTTGCA TTCCA</td><td><sup>m</sup>Cks<sup>m</sup>CksAksAdSTdsT dsTdsTdsGds<sup>m</sup>CdsAdsT T mp mp a ds<sup>1</sup> ds '-'ks '-'ks-^'-k</td><td> 78</td><td> 1242</td>
<td> 786508</td><td> N/A</td><td> N/A</td><td> 6550</td><td> 6565</td><td> TTCCAATTTTG CATTC</td><td> TksTk<sub>S</sub><sup>m</sup>CkS<sup>m</sup>CdSA<sub>ds</sub>A '־/m י~/ יד יד יד יד ds 1 ds 1 ds 1 ds 1 ds^Jds Cd sAd<sub>S</sub>TksTks<sup>m</sup>Ck</td><td> 39</td><td> 1244</td>
<td> 786509</td><td> N/A</td><td> N/A</td><td> 6551</td><td> 6566</td><td> ATTCCAATTTT GCATT</td><td> AksTksTks^ds^dsA dsAdsTdsTdsTdsTdsGds <sup>1</sup>CdsAksTksTk</td><td> 21</td><td> 1245</td>
<td> 786510</td><td> N/A</td><td> N/A</td><td> 6553</td><td> 6568</td><td> TGATTCCAATT TTGCA</td><td> Tk<sub>S</sub>GksAk<sub>S</sub>Td<sub>S</sub>Tds<sup>m</sup>Cds <sup>m</sup>Cd<sub>S</sub>Ad<sub>S</sub>Ad<sub>S</sub>Td<sub>S</sub>Td<sub>S</sub>Td<sub>S </sub>T<sub>ds</sub>Gks<sup>m</sup>CksAk</td><td> 17</td><td> 1246</td>
<td> 786511</td><td> N/A</td><td> N/A</td><td> 6555</td><td> 6570</td><td> CTTGATTCCAA TTTTG</td><td> ™CksTksTksGdsAdsTds Tds<sup>m</sup>Cds<sup>m</sup>CdsAd<sub>S</sub>A<sub>ds</sub>T dsTdsTksTksGk</td><td> 20</td><td> 1247</td>
<td> 786512</td><td> N/A</td><td> N/A</td><td> 6557</td><td> 6572</td><td> CACTTGATTCC AATTT</td><td><sup>m</sup>CksAkS<sup>m</sup>CksTdST<sub>ds</sub>G dsAd<sub>s</sub>Td<sub>s</sub>T<sub>ds</sub><sup>m</sup>Cds<sup>m</sup>Cds AdsAdsTksTksTk</td><td> 36</td><td> 1248</td>
Table 19
Inhibition of IRF5 mRNA by modified oligonucleotides targeting SEQ ID NO: 1 and 2
<td> Compound Number</td><td> SEQ ID NO: 1 Start Site</td><td> SEQ ID NO: 1 Stop Site</td><td> SEQ ID NO: 2 Start Site</td><td> SEQ ID NO: 2 Stop Site</td><td> Sequence (5' to 3')</td><td> Chemistry Notation</td><td> (% Inhibition)</td><td> SEQ ID NO</td>
<td> 665795</td><td> 385</td><td> 400</td><td> 4710</td><td> 4725</td><td> GTTATCTCCGT CCTGG</td><td> Gk<sub>S</sub>Tk<sub>S</sub>Tk<sub>S</sub>Ad<sub>S</sub>Td<sub>S</sub><sup>m</sup>Cds τ /~י τ m Ids Cds Cds<Jdslds Cds<sup>m</sup>CdsT<sub>ks</sub>Gk<sub>S</sub>Gk</td><td> 31</td><td> 113</td>
<td> 728489</td><td> 484</td><td> 499</td><td> 8377</td><td> 8392</td><td> AAGGGCACAG CGCAGG</td><td> AksAksGksGdsGds Cd <sub>s</sub>A<sub>ds</sub><sup>m</sup>CdSAdsGdS<sup>m</sup>CdS Gds^dsAksGksGk</td><td> 0</td><td> 1249</td>
<td> 728695</td><td> 1270</td><td> 1285</td><td> 10503</td><td> 10518</td><td> TGAGTCATGG GCTGAG</td><td> Tk<sub>S</sub>GksAksGdsTd<sub>S</sub><sup>m</sup>Cds Ad<sub>S</sub>T<sub>ds</sub>GdsGdsGds<sup>m</sup>Cd sT dsGksAksGk</td><td> 0</td><td> 423</td>
<td> 728696</td><td> 1271</td><td> 1286</td><td> 10504</td><td> 10519</td><td> ATGAGTCATG GGCTGA</td><td> AksTksGksAdsGdsTds <sup>m</sup>CdsAdSTdSGdSGdsGd s<sup>m</sup>CdsTkSGk<sub>S</sub>Ak</td><td> 21</td><td> 424</td>
<td> 728708</td><td> 1308</td><td> 1323</td><td> 10541</td><td> 10556</td><td> AGCTTGGTCT TGACCT</td><td> Ak<sub>S</sub>Gks<sup>m</sup>CksTd<sub>S</sub>TdsGds τ τ י־/1מ τ י~/ vJdslds Cds 1 ds 1 ds<Jds Ads^ks^ksTk</td><td> 38</td><td> 436</td>
<td> 785345</td><td> 383</td><td> 398</td><td> 4708</td><td> 4723</td><td> TATCTCCGTCC TGGCT</td><td> TAT τ 1 ks^ds A ds '-'ds A ds V ds Cds<Jds 1 ds Cds C 111/^ τ י~/ י~/ T ds 1 ks'Jes'Jks '-'es^k</td><td> 0</td><td> 116</td>
<td> 785346</td><td> 385</td><td> 400</td><td> 4710</td><td> 4725</td><td> GTTATCTCCGT CCTGG</td><td> GksTd<sub>S</sub>Td<sub>S</sub>Ad<sub>S</sub>Td<sub>S</sub><sup>m</sup>Cds m יך י~/ τ 1 ds '-'ds '-׳ds'-Jds 1 ds Cks<sup>m</sup>CesTksGesGk</td><td> 0</td><td> 113</td>
<td> 785350</td><td> 482</td><td> 497</td><td> 8375</td><td> 8390</td><td> GGGCACAGCG CAGGTT</td><td> GksGdsGds<sup>m</sup>CdsAds<sup>m </sup>CdsA<sub>ds</sub>Gd<sub>S</sub><sup>m</sup>Cd<sub>S</sub>Gd<sub>S</sub><sup>m </sup>CdsAksGesGksTesTk</td><td> 37</td><td> 1250</td>
<td> 785351</td><td> 484</td><td> 499</td><td> 8377</td><td> 8392</td><td> AAGGGCACAG CGCAGG</td><td> AksAdsGdsGdsGds Cd <sub>s</sub>Ad<sub>S</sub><sup>m</sup>CdSAdsGds<sup>m</sup>Cds Gks<sup>m</sup>CesAksGesG<sub>k</sub></td><td> 0</td><td> 1249</td>
<td> 785355</td><td> 1268</td><td> 1283</td><td> 10501</td><td> 10516</td><td> AGTCATGGGC TGAGGC</td><td> Ak<sub>s</sub>GdsTds<sup>m</sup>CdsAdsTds GdsGdsGds<sup>m</sup>CdsT<sub>d</sub>sGk <sub>s</sub>A־<sub>s</sub>Gk<sub>S</sub>Ges<sup>m</sup>Ck</td><td> 25</td><td> 421</td>
<td> 785356</td><td> 1269</td><td> 1284</td><td> 10502</td><td> 10517</td><td> GAGTCATGGG CTGAGG</td><td> Gk<sub>S</sub>Ad<sub>S</sub>GdsTds<sup>m</sup>CdsAd sTdsGdsGdsGds<sup>m</sup>Cd<sub>S</sub>Tk sGesAksGesGk</td><td> 0</td><td> 422</td>
<td> 785357</td><td> 1270</td><td> 1285</td><td> 10503</td><td> 10518</td><td> TGAGTCATGG GCTGAG</td><td> Tk<sub>s</sub>GdsAd<sub>s</sub>GdsTds<sup>m</sup>Cds Ad<sub>S</sub>TdsGdsGdsGds<sup>m</sup>Ck sT esGksAesGk</td><td> 0</td><td> 423</td>
<td> 785358</td><td> 1271</td><td> 1286</td><td> 10504</td><td> 10519</td><td> ATGAGTCATG GGCTGA</td><td> AksTdsGdsAdsGdsTds <sup>m</sup>CdSAdSTdSGdsGdsGk s<sup>m</sup>CesTksGe<sub>S</sub>Ak</td><td> 0</td><td> 424</td>
<td> 785405</td><td> 482</td><td> 497</td><td> 8375</td><td> 8390</td><td> GGGCACAGCG CAGGTT</td><td> GksGdsGds<sup>m</sup>CdsAds<sup>m </sup>CdsAdsGds<sup>m</sup>CdsGds<sup>m </sup>CksAesGksGesTksTe</td><td> 33</td><td> 1250</td>
<td> 785406</td><td> 484</td><td> 499</td><td> 8377</td><td> 8392</td><td> AAGGGCACAG CGCAGG</td><td> AksAdsGdsGdsGds Cd <sub>s</sub>Ad<sub>S</sub><sup>m</sup>CdsAdsGds<sup>m</sup>Cks Ges<sup>m</sup>C<sub>ks</sub>A<sub>es</sub>G<sub>ks</sub>Ge</td><td> 0</td><td> 1249</td>
<td> 785410</td><td> 1268</td><td> 1283</td><td> 10501</td><td> 10516</td><td> AGTCATGGGC TGAGGC</td><td> AksGdsTds<sup>m</sup>CdsAdsTds GdsGdsGds<sup>m</sup>CdsTksGe sAksGesGks<sup>m</sup>Ce</td><td> 17</td><td> 421</td>
<td> 785411</td><td> 1269</td><td> 1284</td><td> 10502</td><td> 10517</td><td> GAGTCATGGG CTGAGG</td><td> G<sub>ks</sub>Ad<sub>S</sub>GdsTd<sub>S</sub><sup>m</sup>CdsAd sTdSGdsGdsGds<sup>m</sup>CksT<sub>e </sub>sGksAesGksGc</td><td> 0</td><td> 422</td>
<td> 785412</td><td> 1270</td><td> 1285</td><td> 10503</td><td> 10518</td><td> TGAGTCATGG GCTGAG</td><td> T<sub>ks</sub>GdsAd<sub>S</sub>GdsTd<sub>S</sub><sup>m</sup>Cds A<sub>ds</sub>T<sub>ds</sub>Gd<sub>S</sub>Gd<sub>S</sub>G<sub>ks</sub><sup>m</sup>Ce sTlssGesAjisGe</td><td> 0</td><td> 423</td>
<td> 785413</td><td> 1271</td><td> 1286</td><td> 10504</td><td> 10519</td><td> ATGAGTCATG GGCTGA</td><td> A<sub>ks</sub>TdsGdsAdsGdsTds ”CdsAdsTdsGdsGksGe «<sup>1</sup>CksTesGksA־</td><td> 7</td><td> 424</td>
<td> 785457</td><td> 385</td><td> 400</td><td> 4710</td><td> 4725</td><td> GTTATCTCCGT CCTGG</td><td> G<sub>ks</sub>TesT<sub>ks</sub>AdsTds<sup>m</sup>Cds m יך י~/ mp mp יך 1 ds '-'ds '-'ds'Jds<sup>1</sup> ds C<sub>ds</sub><sup>m</sup>Ce<sub>S</sub>T<sub>es</sub>G<sub>ks</sub>G<sub>k</sub></td><td> 13</td><td> 113</td>
<td> 785460</td><td> 484</td><td> 499</td><td> 8377</td><td> 8392</td><td> AAGGGCACAG CGCAGG</td><td> AjssAesGlisGdsGds Cd <sub>s</sub>Ad<sub>S</sub><sup>m</sup>CdSAdsGds<sup>m</sup>Cds Gds^esAesGksGk</td><td> 0</td><td> 1249</td>
<td> 785462</td><td> 1270</td><td> 1285</td><td> 10503</td><td> 10518</td><td> TGAGTCATGG GCTGAG</td><td> T<sub>ks</sub>GesA<sub>ks</sub>GdsTds<sup>m</sup>Cds AdSTdsGdsGdsGds<sup>m</sup>Cd sTcsGesAk<sub>s</sub>Gk</td><td> 12</td><td> 423</td>
<td> 785463</td><td> 1271</td><td> 1286</td><td> 10504</td><td> 10519</td><td> ATGAGTCATG GGCTGA</td><td> A<sub>ks</sub>T <sub>CS</sub>G ks AdsGdsT ds <sup>1</sup>CdsAdsTdsGdsGdsGd sTesTesGksAk</td><td> 0</td><td> 424</td>
<td> 785489</td><td> 384</td><td> 399</td><td> 4709</td><td> 4724</td><td> TTATCTCCGTC CTGGC</td><td> T<sub>ks</sub>T<sub>ks</sub>Ad<sub>S</sub>Td<sub>S</sub><sup>m</sup>Cd<sub>S</sub>Tds τ י-/ י־/1מ Cds Cds<Jds 1 ds Cds ''T Γ'' Γ י־/1מ '-'ds 1 ks'Jes'Jks '-׳e</td><td> 0</td><td> 117</td>
<td> 785490</td><td> 385</td><td> 400</td><td> 4710</td><td> 4725</td><td> GTTATCTCCGT CCTGG</td><td> G<sub>ks</sub>T<sub>ks</sub>TdsAd<sub>S</sub>Tds<sup>m</sup>Cds τ mp mp /~יך י m 1 ds '-<sup>z</sup>ds '-'ds'Jds<sup>1</sup> ds Cds^ksTesGksGe</td><td> 0</td><td> 113</td>
<td> 785495</td><td> 484</td><td> 499</td><td> 8377</td><td> 8392</td><td> AAGGGCACAG CGCAGG</td><td> AjssAissGdsGdsGds Cd sAds<sup>m</sup>CdsA<sub>d</sub>sGds<sup>m</sup>Cds Gds^ksAesGksGe</td><td> 0</td><td> 1249</td>
<td> 785499</td><td> 1269</td><td> 1284</td><td> 10502</td><td> 10517</td><td> GAGTCATGGG CTGAGG</td><td> G<sub>ks</sub>A<sub>ks</sub>GdsTd<sub>S</sub><sup>m</sup>CdsAd sTdsGdsGdsGds<sup>m</sup>Cd<sub>S</sub>Td sGk<sub>s</sub>A<sub>es</sub>GksGe</td><td> 40</td><td> 422</td>
<td> 785500</td><td> 1270</td><td> 1285</td><td> 10503</td><td> 10518</td><td> TGAGTCATGG GCTGAG</td><td> T<sub>ks</sub>G<sub>ks</sub>Ad<sub>S</sub>GdsTd<sub>S</sub><sup>m</sup>Cds AdsT<sub>d</sub>sGdsGdsGds<sup>m</sup>Cd sTlssGesAicsGe</td><td> 0</td><td> 423</td>
<td> 785501</td><td> 1271</td><td> 1286</td><td> 10504</td><td> 10519</td><td> ATGAGTCATG GGCTGA</td><td> A<sub>ks</sub>T<sub>ks</sub>GdsA<sub>d</sub>sGdsTds <sup>111</sup>CdsAdsTdsGdsGdsGd sTksTesGksAe</td><td> 0</td><td> 424</td>
<td> 785545</td><td> 384</td><td> 399</td><td> 4709</td><td> 4724</td><td> TTATCTCCGTC CTGGC</td><td> T<sub>ks</sub>T<sub>ks</sub>AdsTds<sup>m</sup>CdsTds mp יך י~/ י־/111 mp '-'ds '-'ds'Jds<sup>1</sup> ds '-'es mp י~/ י~/ <sub>T</sub> י־/1מ Ves A es'Jes'Jks '-'k</td><td> 0</td><td> 117</td>
<td> 785550</td><td> 1269</td><td> 1284</td><td> 10502</td><td> 10517</td><td> GAGTCATGGG CTGAGG</td><td> G<sub>ks</sub>A<sub>ks</sub>GdsTds<sup>m</sup>CdsAd sTdsGdsGdsGds<sup>m</sup>CesT<sub>e </sub>sGesA<sub>e</sub>sG<sub>k</sub>sG<sub>k</sub></td><td> 5</td><td> 422</td>
<td> 785551</td><td> 1270</td><td> 1285</td><td> 10503</td><td> 10518</td><td> TGAGTCATGG GCTGAG</td><td> Tk<sub>S</sub>GksAd<sub>S</sub>GdsTd<sub>S</sub><sup>m</sup>Cds Ad<sub>S</sub>Td<sub>S</sub>Gd<sub>S</sub>Gd<sub>S</sub>G<sub>es</sub><sup>m</sup>Ce sTesGesAksGk</td><td> 15</td><td> 423</td>
<td> 785575</td><td> 383</td><td> 398</td><td> 4708</td><td> 4723</td><td> TATCTCCGTCC TGGCT</td><td> י־/במ τ י־/במ tat 1 ksAks 1 ds '-'ds 1 ds ds Cds<Jdslds Cds C τ /~י~/ י mp τ ks<sup>1</sup> es^Jks^Jes Mis^k</td><td> 6</td><td> 116</td>
<td> 785576</td><td> 384</td><td> 399</td><td> 4709</td><td> 4724</td><td> TTATCTCCGTC CTGGC</td><td> Tk<sub>s</sub>TksAdsTds<sup>m</sup>CdsTds '-'ds V^dskJds 1 ds '-'ks Ves A kskJeskJks Vk</td><td> 0</td><td> 117</td>
<td> 785577</td><td> 385</td><td> 400</td><td> 4710</td><td> 4725</td><td> GTTATCTCCGT CCTGG</td><td> GksTksTd<sub>S</sub>Ad<sub>S</sub>Td<sub>S</sub><sup>m</sup>Cds τ m י-/ mr י־/1מ τ 1 ds '-'ds V^dskJds 1 ks Ces<sup>m</sup>CksT<sub>e</sub>sGksGk</td><td> 0</td><td> 113</td>
<td> 785583</td><td> 482</td><td> 497</td><td> 8375</td><td> 8390</td><td> GGGCACAGCG CAGGTT</td><td> G<sub>ks</sub>Gk<sub>S</sub>Gd<sub>S</sub><sup>m</sup>CdSAds<sup>m </sup>CdsAd<sub>S</sub>Gd<sub>S</sub><sup>m</sup>Cd<sub>S</sub>G<sub>ds</sub><sup>m </sup>CksAesGksGesTksTk</td><td> 61</td><td> 1250</td>
<td> 785584</td><td> 484</td><td> 499</td><td> 8377</td><td> 8392</td><td> AAGGGCACAG CGCAGG</td><td> AksAksGdsGdsGds Cd <sub>s</sub>Ad<sub>S</sub><sup>m</sup>CdsAdsGds<sup>m</sup>CkS Ges<sup>m</sup>CksA<sub>es</sub>GksGk</td><td> 0</td><td> 1249</td>
<td> 785590</td><td> 1268</td><td> 1283</td><td> 10501</td><td> 10516</td><td> AGTCATGGGC TGAGGC</td><td> AksGksTds<sup>m</sup>CdsAdsTds GdsGdsGds<sup>m</sup>CdsTksGe sAksGesGks<sup>m</sup>Ck</td><td> 17</td><td> 421</td>
<td> 785591</td><td> 1269</td><td> 1284</td><td> 10502</td><td> 10517</td><td> GAGTCATGGG CTGAGG</td><td> Gk<sub>S</sub>AksGdsTd<sub>S</sub><sup>m</sup>CdsAd sTdsGdsGdsGds<sup>m</sup>CksT<sub>e s</sub>GksA<sub>es</sub>GksGk</td><td> 0</td><td> 422</td>
<td> 785592</td><td> 1270</td><td> 1285</td><td> 10503</td><td> 10518</td><td> TGAGTCATGG GCTGAG</td><td> TksGk<sub>S</sub>Ad<sub>S</sub>GdsTd<sub>S</sub><sup>m</sup>Cds A<sub>ds</sub>T<sub>ds</sub>Gd<sub>S</sub>Gd<sub>S</sub>Gk<sub>S</sub><sup>m</sup>Ce sTksGesAksGk</td><td> 0</td><td> 423</td>
<td> 785593</td><td> 1271</td><td> 1286</td><td> 10504</td><td> 10519</td><td> ATGAGTCATG GGCTGA</td><td> AksTksGdsAdsGdsTds ”CdsAdsTdsGdsGksGe <sub>s</sub><sup>m</sup>CksTesGksAk</td><td> 0</td><td> 424</td>
<td> 785654</td><td> 384</td><td> 399</td><td> 4709</td><td> 4724</td><td> TTATCTCCGTC CTGGC</td><td> Tk<sub>s</sub>TksAdsTds<sup>m</sup>CdsTds '-'ds '-׳ds'-Jds<sup>1</sup> ds '-'ds Ves A es'Jes'Jks '-'k</td><td> 5</td><td> 117</td>
<td> 785659</td><td> 1269</td><td> 1284</td><td> 10502</td><td> 10517</td><td> GAGTCATGGG CTGAGG</td><td> Gk<sub>S</sub>AksGdsTd<sub>S</sub><sup>m</sup>CdsAd sTdsGdsGdsGds<sup>m</sup>CdsT<sub>e s</sub>G<sub>e</sub>sA<sub>es</sub>GksGk</td><td> 30</td><td> 422</td>
<td> 785660</td><td> 1270</td><td> 1285</td><td> 10503</td><td> 10518</td><td> TGAGTCATGG GCTGAG</td><td> Tk<sub>S</sub>GksAd<sub>S</sub>GdsTd<sub>S</sub><sup>m</sup>Cds A<sub>ds</sub>T<sub>ds</sub>Gd<sub>S</sub>Gd<sub>S</sub>Gd<sub>S</sub><sup>m</sup>Ce sTesGesAksGk</td><td> 16</td><td> 423</td>
<td> 785684</td><td> 384</td><td> 399</td><td> 4709</td><td> 4724</td><td> TTATCTCCGTC CTGGC</td><td> Tk<sub>s</sub>TksAdsTds<sup>m</sup>CdsTds Cds Cds<Jds 1 ds Cds 111/י τ Τ' Τ' ηιτ '-'ks 1 dskJkskJds '-'k</td><td> 14</td><td> 117</td>
<td> 785689</td><td> 1269</td><td> 1284</td><td> 10502</td><td> 10517</td><td> GAGTCATGGG CTGAGG</td><td> Gk<sub>S</sub>AksGdsTd<sub>S</sub><sup>m</sup>CdsAd sTdsGdsGdsGds<sup>m</sup>Cd<sub>S</sub>Tk sGdsAksGdsGk</td><td> 31</td><td> 422</td>
<td> 785690</td><td> 1270</td><td> 1285</td><td> 10503</td><td> 10518</td><td> TGAGTCATGG GCTGAG</td><td> Tk<sub>S</sub>GksAd<sub>S</sub>GdsTd<sub>S</sub><sup>m</sup>Cds Ad<sub>S</sub>TdsGdsGdsGds<sup>m</sup>Ck sT dsGksAdsGk</td><td> 12</td><td> 423</td>
<td> 785714</td><td> 384</td><td> 399</td><td> 4709</td><td> 4724</td><td> TTATCTCCGTC CTGGC</td><td> Tk<sub>s</sub>TksAdsTds<sup>m</sup>CdsTds τ τ ηιτ י־/111 י־/111 Cds '-'ds'Jds 1 ds Cds 111/י־ Τ Γ'' Γ'' '-'ks 1 es'Jks'Jes Vk</td><td> 0</td><td> 117</td>
<td> 785715</td><td> 385</td><td> 400</td><td> 4710</td><td> 4725</td><td> GTTATCTCCGT CCTGG</td><td> GksTksTd<sub>S</sub>Ad<sub>S</sub>Td<sub>S</sub><sup>m</sup>Cds m יך י~/ י>111 יך 1 ds '-'ds '-'ds'^Jds<sup>1</sup> ds CksTesTksGesGk</td><td> 0</td><td> 113</td>
<td> 785720</td><td> 484</td><td> 499</td><td> 8377</td><td> 8392</td><td> AAGGGCACAG CGCAGG</td><td> AksAksGdsGdsGds Cd <sub>s</sub>Ad<sub>S</sub><sup>m</sup>CdSAdsGds<sup>m</sup>Cds G<sub>ks</sub><sup>m</sup>C<sub>e</sub>sA<sub>k</sub>sG<sub>e</sub>sG<sub>k</sub></td><td> 0</td><td> 1249</td>
<td> 785724</td><td> 1269</td><td> 1284</td><td> 10502</td><td> 10517</td><td> GAGTCATGGG CTGAGG</td><td> G<sub>ks</sub>A<sub>ks</sub>GdsTd<sub>S</sub><sup>m</sup>CdsAd sTdsGdsGdsGds<sup>m</sup>Cd<sub>S</sub>T<sub>k </sub>sGesAjssGesGli</td><td> 15</td><td> 422</td>
<td> 785725</td><td> 1270</td><td> 1285</td><td> 10503</td><td> 10518</td><td> TGAGTCATGG GCTGAG</td><td> T<sub>ks</sub>G<sub>ks</sub>Ad<sub>S</sub>Gd<sub>S</sub>Td<sub>S</sub><sup>m</sup>Cds AdSTdsGdsGdsGds<sup>m</sup>Ck sT esG<sub>k</sub>sA<sub>e</sub>sG<sub>k</sub></td><td> 0</td><td> 423</td>
<td> 785726</td><td> 1271</td><td> 1286</td><td> 10504</td><td> 10519</td><td> ATGAGTCATG GGCTGA</td><td> A<sub>ks</sub>T<sub>ks</sub>Gd<sub>S</sub>A<sub>ds</sub>Gd<sub>S</sub>T<sub>ds </sub><sup>m</sup>CdsAdSTdsGdSGdSGk s<sup>m</sup>CesTksGesA<sub>k</sub></td><td> 0</td><td> 424</td>
<td> 785770</td><td> 385</td><td> 400</td><td> 4710</td><td> 4725</td><td> GTTATCTCCGT CCTGG</td><td> G<sub>k</sub>sT<sub>k</sub>sT<sub>ks</sub>AdsTds<sup>m</sup>Cds m יך י~/ י>111 יך 1 ds '-<sup>z</sup>ds '-'ds'Jds<sup>1</sup> ds CksTdsTksGdsGk</td><td> 27</td><td> 113</td>
<td> 785773</td><td> 484</td><td> 499</td><td> 8377</td><td> 8392</td><td> AAGGGCACAG CGCAGG</td><td> AjssAissGlssGdsGds Cd <sub>s</sub>Ad<sub>S</sub><sup>m</sup>CdSAdsGds<sup>m</sup>Cds Gks^dsAksGdsGk</td><td> 12</td><td> 1249</td>
<td> 785775</td><td> 1270</td><td> 1285</td><td> 10503</td><td> 10518</td><td> TGAGTCATGG GCTGAG</td><td> T<sub>ks</sub>G<sub>ks</sub>A<sub>ks</sub>GdsTd<sub>S</sub><sup>m</sup>Cds AdSTdsGdsGdsGds<sup>m</sup>Ck sT d<sub>S</sub>G<sub>ks</sub>A<sub>ds</sub>G<sub>k</sub></td><td> 3</td><td> 423</td>
<td> 785776</td><td> 1271</td><td> 1286</td><td> 10504</td><td> 10519</td><td> ATGAGTCATG GGCTGA</td><td> AksTksGksAdsGdsTds <sup>m</sup>CdsAdSTdsGdSGdSGk s<sup>m</sup>CdsTksG<sub>d</sub>sA<sub>k</sub></td><td> 0</td><td> 424</td>
<td> 785802</td><td> 384</td><td> 399</td><td> 4709</td><td> 4724</td><td> TTATCTCCGTC CTGGC</td><td> T<sub>ks</sub>T<sub>ks</sub>A<sub>ks</sub>Td<sub>S</sub><sup>m</sup>Cd<sub>S</sub>Tds τ י-/ י־/1מ Cds '-'ds'Jds 1 ds Cds ''T Γ'' Γ י־/1מ '-ks 1 eskJkskJes Vk</td><td> 0</td><td> 117</td>
<td> 785803</td><td> 385</td><td> 400</td><td> 4710</td><td> 4725</td><td> GTTATCTCCGT CCTGG</td><td> G<sub>k</sub>sT<sub>k</sub>sT<sub>ks</sub>AdsTds<sup>m</sup>Cds m יך י~/ י>111 τ 1 ds '-'ds '-'ds'Jds<sup>1</sup> ds Cks^esTksGesGk</td><td> 0</td><td> 113</td>
<td> 785808</td><td> 484</td><td> 499</td><td> 8377</td><td> 8392</td><td> AAGGGCACAG CGCAGG</td><td> AjssAissGlssGdsGds Cd <sub>s</sub>Ad<sub>S</sub><sup>m</sup>CdSAdsGds<sup>m</sup>Cds G<sub>ks</sub><sup>m</sup>C<sub>e</sub>sA<sub>k</sub>sG<sub>e</sub>sG<sub>k</sub></td><td> 0</td><td> 1249</td>
<td> 785812</td><td> 1269</td><td> 1284</td><td> 10502</td><td> 10517</td><td> GAGTCATGGG CTGAGG</td><td> G<sub>ks</sub>A<sub>ks</sub>G<sub>ks</sub>Td<sub>S</sub><sup>m</sup>CdsAd sTdsGdsGdsGds<sup>m</sup>Cd<sub>S</sub>T<sub>k </sub>sGesA^GesGit</td><td> 0</td><td> 422</td>
<td> 785813</td><td> 1270</td><td> 1285</td><td> 10503</td><td> 10518</td><td> TGAGTCATGG GCTGAG</td><td> T<sub>ks</sub>G<sub>ks</sub>A<sub>ks</sub>GdsTd<sub>S</sub><sup>m</sup>Cds AdSTdsGdsGdsGds<sup>m</sup>Ck sT esG<sub>k</sub>sA<sub>e</sub>sG<sub>k</sub></td><td> 0</td><td> 423</td>
<td> 785814</td><td> 1271</td><td> 1286</td><td> 10504</td><td> 10519</td><td> ATGAGTCATG GGCTGA</td><td> AksTksGksAdsGdsTds <sup>m</sup>CdsAdSTdsGdSGdSGk s<sup>m</sup>CesTksGesA<sub>k</sub></td><td> 0</td><td> 424</td>
<td> 785858</td><td> 385</td><td> 400</td><td> 4710</td><td> 4725</td><td> GTTATCTCCGT CCTGG</td><td> G<sub>k</sub>sT<sub>k</sub>sT<sub>ks</sub>AdsTds<sup>m</sup>Cds m יך י~/ י>111 τ 1 ds '-'ds '-'ds'Jds<sup>1</sup> ds Cds^ksTesGksGe</td><td> 0</td><td> 113</td>
<td> 785861</td><td> 484</td><td> 499</td><td> 8377</td><td> 8392</td><td> AAGGGCACAG CGCAGG</td><td> AjssAissGlssGdsGds Cd <sub>s</sub>Ad<sub>S</sub><sup>m</sup>CdSAdsGds<sup>m</sup>Cds Gds^ksAesGksGe</td><td> 0</td><td> 1249</td>
<td> 785863</td><td> 1270</td><td> 1285</td><td> 10503</td><td> 10518</td><td> TGAGTCATGG GCTGAG</td><td> Tk<sub>S</sub>GksAksGdsTd<sub>S</sub><sup>m</sup>Cds Ad<sub>S</sub>TdsGdsGdsGds<sup>m</sup>Cd sTksGesAksGe</td><td> 17</td><td> 423</td>
<td> 785864</td><td> 1271</td><td> 1286</td><td> 10504</td><td> 10519</td><td> ATGAGTCATG GGCTGA</td><td> AksTksGksAdsGdsTds <sup>m</sup>CdsAdsTdsGdsGdsGd s<sup>m</sup>CksTesGksAe</td><td> 9</td><td> 424</td>
<td> 785890</td><td> 384</td><td> 399</td><td> 4709</td><td> 4724</td><td> TTATCTCCGTC CTGGC</td><td> TksTksAksTds<sup>m</sup>CdsTds τ י-/ י־/1מ Cds Cds<Jdslds Cds י־/1מ י~/ י~/ τ י־/1מ ^ds 1 ksvJksvJks</td><td> 0</td><td> 117</td>
<td> 785891</td><td> 385</td><td> 400</td><td> 4710</td><td> 4725</td><td> GTTATCTCCGT CCTGG</td><td> Gk<sub>S</sub>Tk<sub>S</sub>Tk<sub>S</sub>Ad<sub>S</sub>Td<sub>S</sub><sup>m</sup>Cds τ m י-/ י־/1מ τ Ids Cds Cds<Jdslds C<sub>d</sub>s<sup>m</sup>CksTksGksGe</td><td> 33</td><td> 113</td>
<td> 785896</td><td> 484</td><td> 499</td><td> 8377</td><td> 8392</td><td> AAGGGCACAG CGCAGG</td><td> AksAksGksGdsGds Cd <sub>s</sub>Ad<sub>S</sub><sup>m</sup>CdSAdsGds<sup>m</sup>Cds Gds<sup>m</sup>CksAksGksGe</td><td> 3</td><td> 1249</td>
<td> 785900</td><td> 1269</td><td> 1284</td><td> 10502</td><td> 10517</td><td> GAGTCATGGG CTGAGG</td><td> Gk<sub>S</sub>AksGksTd<sub>S</sub><sup>m</sup>CdsAd sTdsGdsGdsGds<sup>m</sup>Cd<sub>S</sub>Td sGksAksGksGe</td><td> 0</td><td> 422</td>
<td> 785901</td><td> 1270</td><td> 1285</td><td> 10503</td><td> 10518</td><td> TGAGTCATGG GCTGAG</td><td> Tk<sub>S</sub>GksAksGdsTd<sub>S</sub><sup>m</sup>Cds Ad<sub>S</sub>T<sub>ds</sub>GdsGdsGds<sup>m</sup>Cd sTksGksAksGe</td><td> 11</td><td> 423</td>
<td> 785902</td><td> 1271</td><td> 1286</td><td> 10504</td><td> 10519</td><td> ATGAGTCATG GGCTGA</td><td> AksTksGksAdsGdsTds <sup>m</sup>CdsAdsTdsGdsGdsGd s<sup>m</sup>CksTksGksAe</td><td> 20</td><td> 424</td>
<td> 785938</td><td> N/A</td><td> N/A</td><td> 6548</td><td> 6563</td><td> CCAATTTTGC ATTCCA</td><td><sup>m</sup>Cks<sup>m</sup>CksAksAdsTdsT dsTdsTdsGds<sup>m</sup>CdsAdsT dsTks<sup>m</sup>Cks<sup>m</sup>CksAe</td><td> 71</td><td> 1242</td>
<td> 786473</td><td> 385</td><td> 400</td><td> 4710</td><td> 4725</td><td> GTTATCTCCGT CCTGG</td><td> GksTd<sub>S</sub>TdsAd<sub>S</sub>Tds<sup>m</sup>Cds τ m י-/ י־/1מ τ 1 ds ^ds ^dsvJds 1 ks Ces<sup>m</sup>CksTesGksGe</td><td> 0</td><td> 113</td>
<td> 786474</td><td> 383</td><td> 398</td><td> 4708</td><td> 4723</td><td> TATCTCCGTCC TGGCT</td><td> י־/במ τ י־/במ TAT 1 ksAds 1 ds ^ds 1 ds mr <sub>r</sub> י>111 -ך ds '-׳ds'-Jds 1 ds ^ds יך י־/1מ י~/ י~/ τ ks 1 eskJkskJes '-ks 1 e</td><td> 0</td><td> 116</td>
<td> 786495</td><td> 483</td><td> 498</td><td> 8376</td><td> 8391</td><td> AGGGCACAGC GCAGGT</td><td> AksGksGksGds CdsAd s<sup>m</sup>CdsAdsGds<sup>m</sup>CdsGds <sup>m</sup>CdsAdsGksGksTk</td><td> 2</td><td> 1251</td>
<td> 786496</td><td> 485</td><td> 500</td><td> 8378</td><td> 8393</td><td> TAAGGGCACA GCGCAG</td><td> TksAksAksGdsGdsGds <sup>m</sup>CdsAds<sup>m</sup>CdsAdsGds<sup>m </sup>CdsGds<sup>m</sup>CksAksGk</td><td> 0</td><td> 1252</td>
<td> 786497</td><td> 486</td><td> 501</td><td> 8379</td><td> 8394</td><td> TTAAGGGCAC AGCGCA</td><td> TksTksAksAdsGdsGds Gds<sup>m</sup>CdsAds<sup>m</sup>CdsAds Gds<sup>m</sup>CdsGks<sup>m</sup>CksAk</td><td> 0</td><td> 1253</td>
Table 20
Inhibition of IRF5 mRNA by modified oligonucleotides targeting SEQ ID NO: 1 and 2
<td> Compound Number</td><td> SEQ ID NO: 1 Start Site</td><td> SEQ ID NO: 1 Stop Site</td><td> SEQ ID NO: 2 Start Site</td><td> SEQ ID NO: 2 Stop Site</td><td> Sequence (5' to 3')</td><td> Chemistry Notation</td><td> (% Inhibition)</td><td> SEQ ID NO</td>
<td> 665892</td><td> 1227</td><td> 1242</td><td> 10460</td><td> 10475</td><td> CACTGACACA GGCGGA</td><td> “CksAksTksTdsGdsAds <sup>m</sup>CdsAds<sup>m</sup>CdsA<sub>ds</sub>G<sub>ds</sub>G<sub>d s</sub><sup>m</sup>C<sub>ds</sub>GksGksA<sub>k</sub></td><td> 1</td><td> 387</td>
<td> 665893</td><td> 1228</td><td> 1243</td><td> 10461</td><td> 10476</td><td> GCACTGACAC AGGCGG</td><td> ϋ^ΛΤΑ A<sub>ds</sub><sup>m</sup>CdsAds<sup>m</sup>CdsA<sub>ds</sub>G<sub>d s</sub>G<sub>ds</sub><sup>m</sup>CksGksGk</td><td> 14</td><td> 39</td>
<td> 728466</td><td> 427</td><td> 442</td><td> 8320</td><td> 8335</td><td> GGTGTATTTC CCTGTC</td><td> GksGk<sub>S</sub>Tk<sub>S</sub>G<sub>ds</sub>T<sub>ds</sub>A<sub>ds</sub>T<sub>d</sub> s 1 ds 1 ds Cds Cds '-'ds 1 י־/1מ τ י~/ dsCks 1 ks Ck</td><td> 10</td><td> 1254</td>
<td> 728489</td><td> 484</td><td> 499</td><td> 8377</td><td> 8392</td><td> AAGGGCACA GCGCAGG</td><td> AksAksGksG<sub>d</sub>sG<sub>d</sub>s C<sub>ds </sub>A<sub>ds</sub><sup>m</sup>CdsAdsGds<sup>m</sup>CdsG<sub>d s</sub><sup>m</sup>C<sub>ds</sub>AksGksGk</td><td> 48</td><td> 1249</td>
<td> 728670</td><td> 1230</td><td> 1245</td><td> 10463</td><td> 10478</td><td> TTGCACTGAC ACAGGC</td><td> TksTksGks<sup>m</sup>CdsAds<sup>m</sup>Cds T<sub>ds</sub>G<sub>ds</sub>A<sub>ds</sub><sup>m</sup>CdsAds<sup>m</sup>Cds A^GATk</td><td> 18</td><td> 398</td>
<td> 728705</td><td> 1303</td><td> 1318</td><td> 10536</td><td> 10551</td><td> GGTCTTGACC TCCCGC</td><td> יד τ י־/1מ τ י~/ י~/ CksCks 1 ks Cds 1 ds 1 ds '-/mr τ m י־/1מ λ י~/ CdsAds Cds CdsAds C mp mp p mp ds Cds CksCks Ck</td><td> 33</td><td> 433</td>
<td> 728706</td><td> 1306</td><td> 1321</td><td> 10539</td><td> 10554</td><td> CTTGGTCTTG ACCTCC</td><td> τ m י~ץ י~ץ יד τ י>111 Cks A ks A ksCdsCds A ds C<sub>ds</sub>T<sub>ds</sub>T<sub>ds</sub>G<sub>ds</sub>A<sub>ds</sub><sup>m</sup>C<sub>ds</sub><sup>m</sup> Cds A ks Cks Ck</td><td> 41</td><td> 434</td>
<td> 728707</td><td> 1307</td><td> 1322</td><td> 10540</td><td> 10555</td><td> GCTTGGTCTT GACCTC</td><td> Gk<sub>S</sub><sup>m</sup>CksTksT<sub>ds</sub>G<sub>ds</sub>G<sub>ds</sub> Am י~/ יד τ י־/1מ τ Ads CdsAdsAdsCdsAds Cds Cks A ks Ck</td><td> 43</td><td> 435</td>
<td> 728708</td><td> 1308</td><td> 1323</td><td> 10541</td><td> 10556</td><td> AGCTTGGTCT TGACCT</td><td> Ak<sub>S</sub>Gks<sup>m</sup>Ck<sub>S</sub>T<sub>ds</sub>T<sub>ds</sub>G<sub>ds</sub> יד יד τ י~/ Cds A ds Cds A ds A dsCds A<sub>ds</sub><sup>m</sup>Cks<sup>m</sup>CksT<sub>k</sub></td><td> 14</td><td> 436</td>
<td> 729037</td><td> 2216</td><td> 2231</td><td> 11781</td><td> 11796</td><td> GGTTCTTGGA CTCTCA</td><td> יד τ י־/1מ יד τ י~/ י~/ CksCks A ks A ds Cds A ds A <sub>ds</sub>G<sub>ds</sub>G<sub>ds</sub>A<sub>ds</sub><sup>m</sup>CdsTds<sup>m</sup>C dsTks<sup>m</sup>CksAk</td><td> 68</td><td> 706</td>
<td> 785354</td><td> 1228</td><td> 1243</td><td> 10461</td><td> 10476</td><td> GCACTGACAC AGGCGG</td><td> Gks<sup>m</sup>CdsAds<sup>m</sup>CdsT<sub>ds</sub>G<sub>ds </sub>A<sub>ds</sub><sup>m</sup>CdsAds<sup>m</sup>CdsA<sub>ds</sub>G<sub>k s</sub>Ges<sup>m</sup>CksGesG<sub>k</sub></td><td> 0</td><td> 39</td>
<td> 785359</td><td> 1301</td><td> 1316</td><td> 10534</td><td> 10549</td><td> TCTTGACCTC CCGCTG</td><td> λ m י~/ יד τ י־/במ τ A ks Cds A ds A dsCdsAds p mp <sup>1</sup>־p mp mp m Cds '-'ds 1 ds '-'ds '-'ds CksGesTksTesGk</td><td> 46</td><td> 391</td>
<td> 785360</td><td> 1303</td><td> 1318</td><td> 10536</td><td> 10551</td><td> GGTCTTGACC TCCCGC</td><td> יד τ τ י~/ י~/ CksCds A ds Cds A ds A ds '-/mr τ m י־/1מ λ י~/ CdsAds Cds Cds A ds C mp mp p mp ks Ces CksCTes Ck</td><td> 37</td><td> 433</td>
<td> 785361</td><td> 1306</td><td> 1321</td><td> 10539</td><td> 10554</td><td> CTTGGTCTTG ACCTCC</td><td> m<x τ יד τ m Cks A ds A dsCdsCds A ds C<sub>ds</sub>T<sub>ds</sub>T<sub>ds</sub>G<sub>ds</sub>A<sub>ds</sub><sup>m</sup>Cks<sup>m</sup> p יך mp mp CesIks Ces Ck</td><td> 0</td><td> 434</td>
<td> 785362</td><td> 1307</td><td> 1322</td><td> 10540</td><td> 10555</td><td> GCTTGGTCTT GACCTC</td><td> Gks<sup>m</sup>CdsTd<sub>S</sub>Td<sub>S</sub>GdsGds A m י~׳/ יד יד ^✓m יד 1 ds '-'ds A ds A ds'-Jds^'ks p mp <sup>1</sup>־p mp Ms '-'ks 1 es M</td><td> 18</td><td> 435</td>
<td> 785363</td><td> 1308</td><td> 1323</td><td> 10541</td><td> 10556</td><td> AGCTTGGTCT TGACCT</td><td> Ak<sub>S</sub>Gds<sup>m</sup>CdsTd<sub>S</sub>TdsGds י~/ יד יד יד י~/ Mis 1 ds '-'ds 1 ds 1 dsvJks A me me יך -^-es '-'ks Ms<sup>1</sup> k</td><td> 0</td><td> 436</td>
<td> 785409</td><td> 1228</td><td> 1243</td><td> 10461</td><td> 10476</td><td> GCACTGACAC AGGCGG</td><td> Gks<sup>m</sup>CdsAds<sup>m</sup>CdsTdsGds Ads<sup>m</sup>CdSAdS<sup>m</sup>CdsAk<sub>S</sub>Ge <sub>s</sub>Gk<sub>s</sub><sup>m</sup>Ce<sub>S</sub>GksGe</td><td> 0</td><td> 39</td>
<td> 785414</td><td> 1301</td><td> 1316</td><td> 10534</td><td> 10549</td><td> TCTTGACCTC CCGCTG</td><td> r' A m יד יד mp יד 1 ks '-'ds A ds A dsMisAds p me יך me me m '-'ds '-'ds 1 ds '-'ds '-'ks CesGfaTesTksGe</td><td> 40</td><td> 391</td>
<td> 785415</td><td> 1303</td><td> 1318</td><td> 10536</td><td> 10551</td><td> GGTCTTGACC TCCCGC</td><td> יד יד mp יד p p xJksxJds A ds '-'ds 1 ds A ds P λ mp mp יד mp vJdsAtfs Ms Ms Iks *-׳ me me p mp es Mes MsvJks M</td><td> 35</td><td> 433</td>
<td> 785416</td><td> 1306</td><td> 1321</td><td> 10539</td><td> 10554</td><td> CTTGGTCTTG ACCTCC</td><td> m יד p p יד יד mp Ms 1 ds 1 dsvJdsvJds 1 ds C<sub>ds</sub>T<sub>ds</sub>T<sub>ds</sub>G<sub>ds</sub>A<sub>ks</sub><sup>m</sup>C<sub>es</sub><sup>m</sup> p יך mp mp '-'ks 1 es '-'ks M</td><td> 0</td><td> 434</td>
<td> 785417</td><td> 1307</td><td> 1322</td><td> 10540</td><td> 10555</td><td> GCTTGGTCTT GACCTC</td><td> Gks<sup>m</sup>CdsTd<sub>S</sub>Td<sub>S</sub>GdsGds P λ in יד יד mp יד 1 ds Ms 1 ds 1 dsvJksAes p mp יך mp Mes Ms^ks M</td><td> 17</td><td> 435</td>
<td> 785418</td><td> 1308</td><td> 1323</td><td> 10541</td><td> 10556</td><td> AGCTTGGTCT TGACCT</td><td> Ak<sub>S</sub>Gds<sup>m</sup>CdsTd<sub>S</sub>TdsGds P יד יד mp יד p vJds 1 ds Ms 1 ds 1 ksMs A mp mp יך TAks Ms Mes<sup>1</sup> e</td><td> 14</td><td> 436</td>
<td> 785464</td><td> 1303</td><td> 1318</td><td> 10536</td><td> 10551</td><td> GGTCTTGACC TCCCGC</td><td> יך יך mp יך p p kJkskJesAks '-'ds<sup>1</sup>ds<sup>1</sup>ds P λ mp mp יד mp MsAds Ms Ms Ids C mp mp p mp ds Ms MsMes Me</td><td> 33</td><td> 433</td>
<td> 785465</td><td> 1306</td><td> 1321</td><td> 10539</td><td> 10554</td><td> CTTGGTCTTG ACCTCC</td><td> mp <sub>T T</sub> p p <sub>T</sub> m Mes 1 es<sup>1</sup> ksMisMis<sup>1</sup> ds C<sub>ds</sub>T<sub>ds</sub>T<sub>ds</sub>G<sub>ds</sub>A<sub>ds</sub><sup>m</sup>C<sub>ds</sub><sup>m</sup> p יך mp mp Ms A es Mes Me</td><td> 36</td><td> 434</td>
<td> 785466</td><td> 1307</td><td> 1322</td><td> 10540</td><td> 10555</td><td> GCTTGGTCTT GACCTC</td><td> Gks<sup>m</sup>CesTksT<sub>ds</sub>G<sub>ds</sub>G<sub>ds</sub> P A m יד יד mp יד 1 ds '-'ds A ds A ds^JdsAds p mp יך mp Ms Ms Iks Me</td><td> 46</td><td> 435</td>
<td> 785467</td><td> 1308</td><td> 1323</td><td> 10541</td><td> 10556</td><td> AGCTTGGTCT TGACCT</td><td> AksGes<sup>m</sup>CksT<sub>ds</sub>T<sub>ds</sub>G<sub>ds</sub> P יד יד mp יד p Ms Ids MsldsldsMs A mp mp יך -^-es Ms '-'ks<sup>1</sup> k</td><td> 38</td><td> 436</td>
<td> 785498</td><td> 1229</td><td> 1244</td><td> 10462</td><td> 10477</td><td> TGCACTGACA CAGGCG</td><td> T<sub>ks</sub>G<sub>ks</sub><sup>m</sup>CdsAds<sup>m</sup>CdsT<sub>ds </sub>G<sub>ds</sub>A<sub>ds</sub><sup>m</sup>CdsAds<sup>m</sup>CdsA<sub>d s</sub>GksGes<sup>m</sup>CksG<sub>e</sub></td><td> 16</td><td> 388</td>
<td> 785502</td><td> 1302</td><td> 1317</td><td> 10535</td><td> 10550</td><td> GTCTTGACCT CCCGCT</td><td> P יד יד mp יד p vJks 1 ks Ms 1 ds 1 dsMis Λ mp mp יד mp m Ads Ms Ms Ids Ms p mp p mp יך '-'ds Mes'Jes '-'ks 1 e</td><td> 65</td><td> 432</td>
<td> 785503</td><td> 1303</td><td> 1318</td><td> 10536</td><td> 10551</td><td> GGTCTTGACC TCCCGC</td><td> יד יד mp יד p p 'Jks'Jks A ds '-'ds 1 ds A ds P λ mp mp יד mp MsAds Ms Ms Ids C mp mp p mp ds Mes MsvJks M</td><td> 0</td><td> 433</td>
<td> 785504</td><td> 1306</td><td> 1321</td><td> 10539</td><td> 10554</td><td> CTTGGTCTTG ACCTCC</td><td> m יד p p יד יד mp Ms 1 ks 1 dsvJdsvJds 1 ds C<sub>ds</sub>T<sub>ds</sub>T<sub>ds</sub>G<sub>ds</sub>A<sub>ds</sub><sup>m</sup>C<sub>ds</sub><sup>m</sup> p יך mp mp '-'ks 1 es '-'ks M</td><td> 39</td><td> 434</td>
<td> 785505</td><td> 1307</td><td> 1322</td><td> 10540</td><td> 10555</td><td> GCTTGGTCTT GACCTC</td><td> Gks<sup>m</sup>Ck<sub>S</sub>T<sub>ds</sub>T<sub>ds</sub>G<sub>ds</sub>G<sub>ds</sub> P Am יד יד mp יד Ids MsldsldsMsAds p mp יך mp Mes Ms Iks M</td><td> 9</td><td> 435</td>
<td> 785506</td><td> 1308</td><td> 1323</td><td> 10541</td><td> 10556</td><td> AGCTTGGTCT TGACCT</td><td> Ak<sub>S</sub>Gks<sup>m</sup>CdsTd<sub>S</sub>TdsGds 'r יד יד יד י~/ 'Jds A ds '-'ds A ds A ds'Jds Aks^es^ksTe</td><td> 0</td><td> 436</td>
<td> 785549</td><td> 1229</td><td> 1244</td><td> 10462</td><td> 10477</td><td> TGCACTGACA CAGGCG</td><td> T<sub>ks</sub>Gks<sup>m</sup>CdsAds<sup>m</sup>CdsTds GdsAds<sup>m</sup>CdsAds<sup>m</sup>CesA־ sGesGes<sup>m</sup>CkSGk</td><td> 0</td><td> 388</td>
<td> 785552</td><td> 1302</td><td> 1317</td><td> 10535</td><td> 10550</td><td> GTCTTGACCT CCCGCT</td><td> י~/ יד יד יד י~/ vJks 1 ks '-'ds 1 ds 1 dsvJds a mp mp יך mp m /¼ '-'ds '-'ds 1 ds Ves p mp p mp <sup>1</sup>־p Ves '-'es'Jes '-'ks^k</td><td> 34</td><td> 432</td>
<td> 785553</td><td> 1306</td><td> 1321</td><td> 10539</td><td> 10554</td><td> CTTGGTCTTG ACCTCC</td><td> m יד 'r' r יד יד mp '-'ks 1 ks A ds'Jds'Jds A ds C<sub>ds</sub>T<sub>ds</sub>T<sub>ds</sub>G<sub>ds</sub>A־<sub>s</sub><sup>m</sup>C<sub>es</sub><sup>m</sup> p יך mp mp Ves A es '-'ks Vk</td><td> 20</td><td> 434</td>
<td> 785554</td><td> 1307</td><td> 1322</td><td> 10540</td><td> 10555</td><td> GCTTGGTCTT GACCTC</td><td> Gks<sup>m</sup>Ck<sub>S</sub>Td<sub>S</sub>Td<sub>S</sub>GdsGds <sup>1</sup>יך mp T T f' A <sup>m</sup> 1 ds '-'ds 1 ds 1 ds^Jes-^-es p mp <sup>1</sup>־p mp Ves '-'es^ks Vk</td><td> 19</td><td> 435</td>
<td> 785588</td><td> 1228</td><td> 1243</td><td> 10461</td><td> 10476</td><td> GCACTGACAC AGGCGG</td><td> Gk<sub>S</sub><sup>m</sup>CksAds<sup>m</sup>CdsTdsGds Ads<sup>m</sup>CdsAds<sup>m</sup>CdsA<sub>ks</sub>G<sub>e s</sub>Gk<sub>s</sub><sup>m</sup>Ce<sub>S</sub>GksGk</td><td> 0</td><td> 39</td>
<td> 785589</td><td> 1229</td><td> 1244</td><td> 10462</td><td> 10477</td><td> TGCACTGACA CAGGCG</td><td> T<sub>ks</sub>Gks<sup>m</sup>CdsAds<sup>m</sup>CdsTds GdsAds<sup>m</sup>CdsAds<sup>m</sup>CksAe <sub>s</sub>GksG<sub>e</sub>s<sup>m</sup>CksGk</td><td> 0</td><td> 388</td>
<td> 785594</td><td> 1301</td><td> 1316</td><td> 10534</td><td> 10549</td><td> TCTTGACCTC CCGCTG</td><td> λ m י~/ יד יד יד 1 ks '-'ks 1 ds 1 dsvJdsAtfs p mp <sup>1</sup>־p mp mp m '-'ds '-'ds 1 ds '-'ds '-'ks CesGks<sup>m</sup>C<sub>e</sub>sTksG<sub>k</sub></td><td> 19</td><td> 391</td>
<td> 785595</td><td> 1302</td><td> 1317</td><td> 10535</td><td> 10550</td><td> GTCTTGACCT CCCGCT</td><td> P יד יד mp יד p 'Jks A ks '-'ds A ds A ds'Jds A mp mp יד mp m Ads '-'ds '-'ds 1 ds '-'ks p mp p mp יך Ves '-'ks'Jes Mes Ik</td><td> 26</td><td> 432</td>
<td> 785596</td><td> 1303</td><td> 1318</td><td> 10536</td><td> 10551</td><td> GGTCTTGACC TCCCGC</td><td> יד יד mp יד p p 'Jks'Jks A ds '-'ds 1 ds A ds P λ mp mp יד mp vJdsAds Cds '-'dsIks mp mp p mp es '-'ks '-'es'Jks Vk</td><td> 44</td><td> 433</td>
<td> 785597</td><td> 1306</td><td> 1321</td><td> 10539</td><td> 10554</td><td> CTTGGTCTTG ACCTCC</td><td> m יד p p יד יד mp '-'ks 1 ks 1 dsvJdsvJds 1 ds C<sub>ds</sub>T<sub>ds</sub>T<sub>ds</sub>G<sub>ds</sub>A<sub>ks</sub><sup>m</sup>C<sub>es</sub><sup>m</sup> p יך mp mp '-'ks 1 es '-'ks Vk</td><td> 0</td><td> 434</td>
<td> 785598</td><td> 1307</td><td> 1322</td><td> 10540</td><td> 10555</td><td> GCTTGGTCTT GACCTC</td><td> Gks<sup>m</sup>Ck<sub>S</sub>T<sub>ds</sub>T<sub>ds</sub>G<sub>ds</sub>G<sub>ds</sub> P Am יד יד mp יד 1 ds '-'ds 1 ds 1 dsvJksAes p mp יך mp '-'ks '-'es A ks '-'k</td><td> 21</td><td> 435</td>
<td> 785599</td><td> 1308</td><td> 1323</td><td> 10541</td><td> 10556</td><td> AGCTTGGTCT TGACCT</td><td> Ak<sub>S</sub>Gks<sup>m</sup>C<sub>ds</sub>T<sub>ds</sub>T<sub>ds</sub>G<sub>ds</sub> P יד יד mp יד p Lids 1 ds '-'ds 1 ds 1 ksvJes A mp mp יך TAks '-'es '-'ks <sup>1</sup> k</td><td> 0</td><td> 436</td>
<td> 785658</td><td> 1229</td><td> 1244</td><td> 10462</td><td> 10477</td><td> TGCACTGACA CAGGCG</td><td> T<sub>ks</sub>G<sub>ks</sub><sup>m</sup>CdsAds<sup>m</sup>CdsT<sub>ds </sub>G<sub>ds</sub>A<sub>ds</sub><sup>m</sup>CdsAds<sup>m</sup>CdsA<sub>e s</sub>Ge<sub>S</sub>Ge<sub>S</sub><sup>m</sup>C<sub>ks</sub>G<sub>k</sub></td><td> 18</td><td> 388</td>
<td> 785661</td><td> 1302</td><td> 1317</td><td> 10535</td><td> 10550</td><td> GTCTTGACCT CCCGCT</td><td> P יד יד mp יד p 'Jks A ks '-'ds A ds A ds'Jds A mp mp יד <sup>m</sup>P m Ads Cds '-'dsIds Cds p mp p mp יך Ves '-'es'Jes Vkslk</td><td> 54</td><td> 432</td>
<td> 785662</td><td> 1306</td><td> 1321</td><td> 10539</td><td> 10554</td><td> CTTGGTCTTG ACCTCC</td><td> m יד p p יד יד mp '-'ks 1 ks 1 dsvJdsvJds 1 ds C<sub>ds</sub>T<sub>ds</sub>T<sub>ds</sub>G<sub>ds</sub>A<sub>ds</sub><sup>m</sup>C<sub>es</sub><sup>m</sup> p יך mp mp Ves A es '-'ks Vk</td><td> 11</td><td> 434</td>
<td> 785663</td><td> 1307</td><td> 1322</td><td> 10540</td><td> 10555</td><td> GCTTGGTCTT GACCTC</td><td> G<sub>ks</sub><sup>m</sup>C<sub>ks</sub>T<sub>ds</sub>T<sub>ds</sub>G<sub>ds</sub>G<sub>ds</sub> P Am יד יד mp יד 1 ds '-'ds 1 ds 1 dsvJdsAes p mp יך mp Ves '-'es^ks Vk</td><td> 10</td><td> 435</td>
<td> 785688</td><td> 1229</td><td> 1244</td><td> 10462</td><td> 10477</td><td> TGCACTGACA CAGGCG</td><td> T<sub>ks</sub>Gk<sub>S</sub><sup>m</sup>CdsAds<sup>m</sup>CdsT<sub>ds </sub>G<sub>ds</sub>A<sub>ds</sub><sup>m</sup>CdsAds<sup>m</sup>CdsA<sub>k </sub>sGdsGfaTdsGk</td><td> 0</td><td> 388</td>
<td> 785691</td><td> 1302</td><td> 1317</td><td> 10535</td><td> 10550</td><td> GTCTTGACCT CCCGCT</td><td> /~י τ τ τ /~י vJks 1 ks '-'ds 1 ds 1 dsvJds a mr mr τ m/^ m Ads Cds Cdslds Cds τ י>111 י~/ י>111 '-'ks '-'ds'Jks '-'dsIk</td><td> 46</td><td> 432</td>
<td> 785692</td><td> 1306</td><td> 1321</td><td> 10539</td><td> 10554</td><td> CTTGGTCTTG ACCTCC</td><td> τ m י~/ י~/ τ τ י־/111 Cks 1 ks 1 dsvJdsvJds 1 ds CdsTdsTdsGdsAds^ks” '-'ds 1 ks '-'ds '-'k</td><td> 13</td><td> 434</td>
<td> 785693</td><td> 1307</td><td> 1322</td><td> 10540</td><td> 10555</td><td> GCTTGGTCTT GACCTC</td><td> G<sub>ks</sub><sup>m</sup>C<sub>ks</sub>T<sub>ds</sub>T<sub>ds</sub>G<sub>ds</sub>G<sub>ds </sub>τ τ τ ri' a m 1 ds '-'ds 1 ds 1 dsvJdsAks '-'ds '-'ks 1 ds '-'k</td><td> 11</td><td> 435</td>
<td> 785723</td><td> 1229</td><td> 1244</td><td> 10462</td><td> 10477</td><td> TGCACTGACA CAGGCG</td><td> T<sub>ks</sub>G<sub>ks</sub><sup>m</sup>CdsAds<sup>m</sup>CdsT<sub>ds </sub>G<sub>ds</sub>A<sub>ds</sub><sup>m</sup>CdsAds<sup>m</sup>CdsA<sub>k </sub>sGesGks<sup>m</sup>CesG<sub>k</sub></td><td> 0</td><td> 388</td>
<td> 785727</td><td> 1302</td><td> 1317</td><td> 10535</td><td> 10550</td><td> GTCTTGACCT CCCGCT</td><td> /~י τ τ τ 'Jks 1 ks '-'ds 1 ds 1 dsvJds a mp mp יך mp m A*-ds '-'ds '-'ds<sup>1</sup> ds '-'ds p mp p mp <sup>1</sup>״p '-'ks '-'es'Jks '-'es^k</td><td> 40</td><td> 432</td>
<td> 785728</td><td> 1303</td><td> 1318</td><td> 10536</td><td> 10551</td><td> GGTCTTGACC TCCCGC</td><td> יד ידי τ י~/ י~/ 'Jks'Jks 1 ds '-'ds 1 ds 1 ds /~י a mr mr τ י־/1מ vJdsAds Cds '-'dsIds C mp mp mp ks '-'es '-׳ks'-Jes Me</td><td> 7</td><td> 433</td>
<td> 785729</td><td> 1306</td><td> 1321</td><td> 10539</td><td> 10554</td><td> CTTGGTCTTG ACCTCC</td><td> τ m י~/ י~/ יד τ י־/111 '-'ks 1 ks 1 dsvJdsvJds 1 ds CdsTdsTdsGdsAds^ks” p τ mp mp '-'es^ks '-'es Me</td><td> 3</td><td> 434</td>
<td> 785730</td><td> 1307</td><td> 1322</td><td> 10540</td><td> 10555</td><td> GCTTGGTCTT GACCTC</td><td> G<sub>ks</sub><sup>m</sup>C<sub>ks</sub>T<sub>ds</sub>T<sub>ds</sub>G<sub>ds</sub>G<sub>ds</sub> a in י~/ יד יד τ 1 ds '-'ds 1 ds 1 dsvJdsAks p mp יך mp Ves '-'ks 1 es Vk</td><td> 33</td><td> 435</td>
<td> 785731</td><td> 1308</td><td> 1323</td><td> 10541</td><td> 10556</td><td> AGCTTGGTCT TGACCT</td><td> A<sub>ks</sub>G<sub>ks</sub><sup>m</sup>C<sub>ds</sub>T<sub>ds</sub>T<sub>ds</sub>G<sub>ds</sub> י~/ יד τ τ י~/ vids 1 ds '-'ds 1 ds 1 dsvJks A<sub>es</sub><sup>m</sup>Cks<sup>m</sup>CesTk</td><td> 8</td><td> 436</td>
<td> 785777</td><td> 1303</td><td> 1318</td><td> 10536</td><td> 10551</td><td> GGTCTTGACC TCCCGC</td><td> יד τ τ י~/ י~/ 'Jks'Jks 1 ks '-'ds 1 ds 1 ds '־/m יד a י~/ 'JdsAds Cds '-'ds A ds '-׳ '־/m י~/ '־/m '־/m ks Cds CksVJds Ck</td><td> 4</td><td> 433</td>
<td> 785778</td><td> 1306</td><td> 1321</td><td> 10539</td><td> 10554</td><td> CTTGGTCTTG ACCTCC</td><td> τ m י~/ י~/ יד m<x τ '-'ks 1 ks 1 ksvJdsvJds 1 ds CdsTdsTdsGdsAds^ks” p τ mp mp '-'ds^ks '-'ds '-'k</td><td> 19</td><td> 434</td>
<td> 785779</td><td> 1307</td><td> 1322</td><td> 10540</td><td> 10555</td><td> GCTTGGTCTT GACCTC</td><td> G<sub>ks</sub><sup>m</sup>C<sub>ks</sub>T<sub>ks</sub>T<sub>ds</sub>G<sub>ds</sub>G<sub>ds</sub> A m י~/ יד τ τ 1 ds '-'ds 1 ds 1 dsvJdsAks p mp τ mp '-'ds '-'ks<sup>1</sup> ds '-'k</td><td> 30</td><td> 435</td>
<td> 785780</td><td> 1308</td><td> 1323</td><td> 10541</td><td> 10556</td><td> AGCTTGGTCT TGACCT</td><td> A<sub>ks</sub>G<sub>ks</sub><sup>m</sup>C<sub>ks</sub>T<sub>ds</sub>T<sub>ds</sub>G<sub>ds</sub> י~/ יד τ τ י~/ vids 1 ds '-'ds 1 ds 1 dsvJks A<sub>ds</sub><sup>m</sup>Cks<sup>m</sup>CdsT<sub>k</sub></td><td> 12</td><td> 436</td>
<td> 785811</td><td> 1229</td><td> 1244</td><td> 10462</td><td> 10477</td><td> TGCACTGACA CAGGCG</td><td> T<sub>ks</sub>G<sub>ks</sub><sup>m</sup>CksAds<sup>m</sup>CdsT<sub>ds </sub>G<sub>ds</sub>A<sub>ds</sub><sup>m</sup>CdsAds<sup>m</sup>CdsA<sub>k </sub>sGesGks<sup>m</sup>CesG<sub>k</sub></td><td> 0</td><td> 388</td>
<td> 785815</td><td> 1302</td><td> 1317</td><td> 10535</td><td> 10550</td><td> GTCTTGACCT CCCGCT</td><td> י~/ יד τ τ י~/ vJks 1 ks '-'ks 1 ds 1 dsvJds a mp mp τ mp m -^-ds '-'ds '-'ds<sup>1</sup> ds '-'ds p mp p mp יך '-'ks '-'es'Jks '-'es^k</td><td> 23</td><td> 432</td>
<td> 785816</td><td> 1303</td><td> 1318</td><td> 10536</td><td> 10551</td><td> GGTCTTGACC TCCCGC</td><td> יד τ τ י~/ י~/ 'Jks'Jks 1 ks '-'ds 1 ds 1 ds י־/1ז1 τ '־/m י־/1ז1 a י~/ vJdsAds Cds '-'dsIds C mp mp p mp ks Ves '-'ks'Jes Vk</td><td> 29</td><td> 433</td>
<td> 785817</td><td> 1306</td><td> 1321</td><td> 10539</td><td> 10554</td><td> CTTGGTCTTG ACCTCC</td><td> י־/1מ t τ u u τ m Cks 1 ks 1 ksvJdsvJds 1 ds CdsTdsTdsGdsAds^ks” p יך mp mp ^eslks Ves Vk</td><td> 1</td><td> 434</td>
<td> 785818</td><td> 1307</td><td> 1322</td><td> 10540</td><td> 10555</td><td> GCTTGGTCTT GACCTC</td><td> Gks<sup>m</sup>CksTksTd<sub>S</sub>GdsGds τ τ τ /~י Am 1 ds '-'ds 1 ds 1 dsvJdsAks p mp τ mp '-'es '-'ks<sup>1</sup> es ^k</td><td> 0</td><td> 435</td>
<td> 785819</td><td> 1308</td><td> 1323</td><td> 10541</td><td> 10556</td><td> AGCTTGGTCT TGACCT</td><td> Ak<sub>S</sub>Gks<sup>m</sup>CksTd<sub>S</sub>TdsGds /~י τ τ τ /~י vJds 1 ds '-'ds 1 ds 1 dsvJks A<sub>es</sub><sup>m</sup>Cks<sup>m</sup>CeSTk</td><td> 3</td><td> 436</td>
<td> 785865</td><td> 1303</td><td> 1318</td><td> 10536</td><td> 10551</td><td> GGTCTTGACC TCCCGC</td><td> p p τ mp τ יד 'Jks'Jks A ks '-'ds 1 ds A ds P a mp mp τ mp <JdsAds Cds Cdslds C mp mp p mp ds Vks VesvJks '-'e</td><td> 7</td><td> 433</td>
<td> 785866</td><td> 1306</td><td> 1321</td><td> 10539</td><td> 10554</td><td> CTTGGTCTTG ACCTCC</td><td> mp τ יד Ο Ο τ m '-'ks 1 ks A ks'Jds'Jds A ds C<sub>ds</sub>Td<sub>S</sub>Td<sub>S</sub>Gd<sub>S</sub>A<sub>ds</sub><sup>m</sup>Cd<sub>S</sub><sup>m</sup> p יך mp mp '-'ks 1 es '-'ks '-׳e</td><td> 15</td><td> 434</td>
<td> 785867</td><td> 1307</td><td> 1322</td><td> 10540</td><td> 10555</td><td> GCTTGGTCTT GACCTC</td><td> Gk<sub>S</sub><sup>m</sup>CksTksTd<sub>S</sub>GdsGds τ mp τ יד O A m 1 ds '-'ds A ds A ds'JdsAds p mp יך mp '-'ks '-'es^ks '-׳e</td><td> 35</td><td> 435</td>
<td> 785868</td><td> 1308</td><td> 1323</td><td> 10541</td><td> 10556</td><td> AGCTTGGTCT TGACCT</td><td> Ak<sub>S</sub>Gks<sup>m</sup>CksTd<sub>S</sub>TdsGds p τ mp τ יד p vJdslds Cds 1 ds 1 ds<Jds A mp mp τ -τ'-ks '-'es '-'ks<sup>1</sup> e</td><td> 26</td><td> 436</td>
<td> 785899</td><td> 1229</td><td> 1244</td><td> 10462</td><td> 10477</td><td> TGCACTGACA CAGGCG</td><td> T<sub>ks</sub>Gks<sup>m</sup>CksAdS<sup>m</sup>CdsTds GdsAd<sub>S</sub><sup>m</sup>CdSAds<sup>m</sup>CdSAd <sub>s</sub>Gk<sub>S</sub>G<sub>ks</sub><sup>m</sup>C<sub>ks</sub>Ge</td><td> 0</td><td> 388</td>
<td> 785903</td><td> 1302</td><td> 1317</td><td> 10535</td><td> 10550</td><td> GTCTTGACCT CCCGCT</td><td> p τ mp τ יד o 'Jks A ks '-'ks A ds A ds'Jds A mp mp τ mp m Ads Cds Cdslds Cds p mp p mp τ '-'ds '-'ks'Jks '-'ks 1 e</td><td> 51</td><td> 432</td>
<td> 785904</td><td> 1303</td><td> 1318</td><td> 10536</td><td> 10551</td><td> GGTCTTGACC TCCCGC</td><td> p p τ mp τ יד 'Jks'Jks A ks '-'ds 1 ds A ds P a mp mp τ mp vJdsAds Cds '-'dsIds C mp mp p mp ds '-'ks '-'ks'Jks '-'e</td><td> 22</td><td> 433</td>
<td> 785905</td><td> 1306</td><td> 1321</td><td> 10539</td><td> 10554</td><td> CTTGGTCTTG ACCTCC</td><td> mp τ יד p p τ m '-'ks 1 ks 1 ksvJdsvJds 1 ds C<sub>ds</sub>T<sub>ds</sub>T<sub>ds</sub>G<sub>ds</sub>A<sub>ds</sub><sup>m</sup>C<sub>ds</sub><sup>m</sup> p יך mp mp '-'ks^ks '-'ks '-'e</td><td> 6</td><td> 434</td>
<td> 785906</td><td> 1307</td><td> 1322</td><td> 10540</td><td> 10555</td><td> GCTTGGTCTT GACCTC</td><td> Gks<sup>m</sup>CksTksT<sub>ds</sub>G<sub>ds</sub>G<sub>ds </sub>τ mp τ י~/ יד Am Ids Cds 1 ds 1 dsVJdsAds p mp τ mp '-'ks '-'ks^ks '-'e</td><td> 29</td><td> 435</td>
<td> 785907</td><td> 1308</td><td> 1323</td><td> 10541</td><td> 10556</td><td> AGCTTGGTCT TGACCT</td><td> Ak<sub>S</sub>Gks<sup>m</sup>Ck<sub>S</sub>T<sub>ds</sub>T<sub>ds</sub>G<sub>ds</sub> י~/ יד τ '־/τ m י~/ vJdslds Cds 1 ds 1 ds<Jds A mp mp τ -^ks '-'ks '-'ks <sup>1</sup> e</td><td> 10</td><td> 436</td>
<td> 785938</td><td> N/A</td><td> N/A</td><td> 6548</td><td> 6563</td><td> CCAATTTTGC ATTCCA</td><td><sup>m</sup>Cks<sup>m</sup>CksAksAdsTdsTds TdsTdsGds<sup>m</sup>CdsA<sub>ds</sub>T<sub>ds</sub>T <sub>ks</sub><sup>m</sup>CkS<sup>m</sup>CkSAe</td><td> 30</td><td> 1242</td>
Table 21
Inhibition of IRF5 mRNA by modified oligonucleotides targeting SEQ ID NO: 1 and 2
<td> Compound Number</td><td> SEQ ID NO: 1 Start Site</td><td> SEQ ID NO: 1 Stop Site</td><td> SEQ ID NO: 2 Start Site</td><td> SEQ ID NO: 2 Stop Site</td><td> Sequence (5' to 3')</td><td> Chemistry Notation</td><td> (% Inhibition)</td><td> SEQ ID NO</td>
<td> 665908</td><td> 1363</td><td> 1378</td><td> 10684</td><td> 10699</td><td> GGTCTGGCCC TTTTGG</td><td> GksGk<sub>S</sub>Tk<sub>S</sub><sup>m</sup>CdsTdsGds /~י mrx mrx mrx יד יד <Jds Cds Cds Cdsldsl dsTdsTksGksGk</td><td> 16</td><td> 393</td>
<td> 728466</td><td> 427</td><td> 442</td><td> 8320</td><td> 8335</td><td> GGTGTATTTC CCTGTC</td><td> GksGksTksGdsTdsAdsTd יך mp mp mp יך יך s<sup>1</sup> ds<sup>1</sup> ds '-<sup>z</sup>ds '-'ds '-'ds<sup>1</sup> mrx יד י~/ dsCks 1 ks Ck</td><td> 50</td><td> 1254</td>
<td> 728670</td><td> 1230</td><td> 1245</td><td> 10463</td><td> 10478</td><td> TTGCACTGAC ACAGGC</td><td> TksTksGks<sup>m</sup>CdsAds<sup>m</sup>Cds TdsGdsAd<sub>S</sub><sup>m</sup>CdsA<sub>ds</sub><sup>m</sup>Cds AdsGksGk<sub>S</sub><sup>m</sup>Ck</td><td> 8</td><td> 398</td>
<td> 728707</td><td> 1307</td><td> 1322</td><td> 10540</td><td> 10555</td><td> GCTTGGTCTT GACCTC</td><td> Gks<sup>m</sup>CksTksTd<sub>S</sub>GdsGds λ m י~/ יד יד י־/1מ יד Ids CdsldsldsCdsAds p mp יך mp '-'ds '-'ks^ks '-'k</td><td> 0</td><td> 435</td>
<td> 728708</td><td> 1308</td><td> 1323</td><td> 10541</td><td> 10556</td><td> AGCTTGGTCT TGACCT</td><td> Ak<sub>S</sub>Gks<sup>m</sup>CksTd<sub>S</sub>TdsGds e יד יד me יד י~/ <Jdslds Cds 1 ds 1 ds<Jds Ads^ks^ksTk</td><td> 16</td><td> 436</td>
<td> 729037</td><td> 2216</td><td> 2231</td><td> 11781</td><td> 11796</td><td> GGTTCTTGGA CTCTCA</td><td> יד יד יד יד י~/ י~/ 'Jks'Jks 1 ks A ds Cds 1 ds A <sub>ds</sub>Gd<sub>S</sub>Gd<sub>S</sub>Ad<sub>S</sub><sup>m</sup>CdSTds<sup>m</sup>C dSTks<sup>m</sup>CksAk</td><td> 0</td><td> 706</td>
<td> 729038</td><td> 2217</td><td> 2232</td><td> 11782</td><td> 11797</td><td> AGGTTCTTGG ACTCTC</td><td> Ak<sub>S</sub>GksGksTd<sub>S</sub>Tds<sup>m</sup>Cds TdsTdsGdsGd<sub>S</sub>Ad<sub>S</sub><sup>m</sup>Cds me יד me יד 1 ds Cks 1 ks Ck</td><td> 0</td><td> 707</td>
<td> 729039</td><td> 2218</td><td> 2233</td><td> 11783</td><td> 11798</td><td> CAGGTTCTTG GACTCT</td><td><sup>m</sup>CksAksGksGdsTdsTds<sup>m </sup>CdsTdSTd<sub>S</sub>GdsGdsAd<sub>S</sub><sup>m</sup> יד me יד Cds 1 ks Cks 1 k</td><td> 0</td><td> 708</td>
<td> 785364</td><td> 1361</td><td> 1376</td><td> 10682</td><td> 10697</td><td> TCTGGCCCTT TTGGAA</td><td> יד me TGC' m<x 1 ks Cds 1 dsCdsCds Cds mp mp יד τ τ τ '-'ds '-'ds 1 ds 1 ds 1 ds 1 ks G<sub>es</sub>G<sub>ks</sub>A<sub>es</sub>A<sub>k</sub></td><td> 0</td><td> 454</td>
<td> 785365</td><td> 1363</td><td> 1378</td><td> 10684</td><td> 10699</td><td> GGTCTGGCCC TTTTGG</td><td> GksGdsTds<sup>m</sup>CdsTdsGds יד יד m<x m<x m<x י~/ <Jds Cds Cds Cdsldsl ksTesTksGesGk</td><td> 0</td><td> 393</td>
<td> 785378</td><td> 2214</td><td> 2229</td><td> 11779</td><td> 11794</td><td> TTCTTGGACT CTCAAG</td><td> יד יד nir יד יד 1 ks A ds Cds 1 ds A ds^dsC a mp יך mp יך m ds-^-ds '-'ds 1 ds '-'ds 1 ks CesAksAesGk</td><td> 0</td><td> 705</td>
<td> 785379</td><td> 2215</td><td> 2230</td><td> 11780</td><td> 11795</td><td> GTTCTTGGAC TCTCAA</td><td> יד יד me יד יד י~/ Cks 1 ds A ds Cds 1 ds A dsC <sub>ds</sub>G<sub>ds</sub>Ads<sup>m</sup>CdsTds<sup>m</sup>CkST es CksAesAk</td><td> 35</td><td> 695</td>
<td> 785380</td><td> 2216</td><td> 2231</td><td> 11781</td><td> 11796</td><td> GGTTCTTGGA CTCTCA</td><td> יד יד me יד יד י~/ י~/ CksCds 1 ds 1 ds Cds 1 ds 1 <sub>ds</sub>G<sub>ds</sub>G<sub>ds</sub>A<sub>ds</sub><sup>m</sup>CdsTks<sup>m</sup>C esTks<sup>m</sup>CesAk</td><td> 9</td><td> 706</td>
<td> 785381</td><td> 2217</td><td> 2232</td><td> 11782</td><td> 11797</td><td> AGGTTCTTGG ACTCTC</td><td> Ak<sub>S</sub>G<sub>ds</sub>G<sub>ds</sub>T<sub>ds</sub>T<sub>ds</sub><sup>m</sup>Cds TdsTdsGdsGdsAds<sup>m</sup>CkS mp יך mp יך 1 es '-'ks 1 es Vk</td><td> 34</td><td> 707</td>
<td> 785382</td><td> 2218</td><td> 2233</td><td> 11783</td><td> 11798</td><td> CAGGTTCTTG GACTCT</td><td><sup>m</sup>CksAdsGdsGdsTdsTds<sup>m </sup>CdsT<sub>ds</sub>T<sub>ds</sub>G<sub>ds</sub>G<sub>ds</sub>Aks<sup>m </sup>p יך mp <sup>1</sup>τ<sup>1 </sup>'-'es^ks '-'es^k</td><td> 0</td><td> 708</td>
<td> 785419</td><td> 1361</td><td> 1376</td><td> 10682</td><td> 10697</td><td> TCTGGCCCTT TTGGAA</td><td> י~/ י~/ τ τ 1 ks '-'ds 1 dsvJdsvJds '-'ds mp mp Τ Τ Τ Τ '-'ds '-'ds 1 ds 1 ds 1 ks 1 es GksGesAksA<sub>e</sub></td><td> 0</td><td> 454</td>
<td> 785420</td><td> 1363</td><td> 1378</td><td> 10684</td><td> 10699</td><td> GGTCTGGCCC TTTTGG</td><td> Gk<sub>S</sub>G<sub>ds</sub>T<sub>ds</sub><sup>m</sup>C<sub>ds</sub>T<sub>ds</sub>G<sub>ds</sub> ידי τ י־/1מ י~/ vids '-'ds '-'ds '-'ds 1 ks 1 esTksTesGksGe</td><td> 0</td><td> 393</td>
<td> 785433</td><td> 2214</td><td> 2229</td><td> 11779</td><td> 11794</td><td> TTCTTGGACT CTCAAG</td><td> י~׳/ י~׳/ יד יד mp יד τ 1 ks A ds '-'ds A ds A ds'Jds'J a mp יך mp יך m ds^ds V/ds 1 ds '-'ks 1 es CksAesAksGe</td><td> 0</td><td> 705</td>
<td> 785434</td><td> 2215</td><td> 2230</td><td> 11780</td><td> 11795</td><td> GTTCTTGGAC TCTCAA</td><td> P יד יד mp יד p τ 'Jks 1 ds A ds '-'ds A ds A ds'J <sub>ds</sub>G<sub>ds</sub>A<sub>ds</sub><sup>m</sup>CdsTks<sup>m</sup>CeST ks CesAksAe</td><td> 0</td><td> 695</td>
<td> 785435</td><td> 2216</td><td> 2231</td><td> 11781</td><td> 11796</td><td> GGTTCTTGGA CTCTCA</td><td> p p τ τ mp יד יד 'Jks'Jds 1 ds 1 ds '-'ds 1 ds 1 <sub>ds</sub>G<sub>ds</sub>G<sub>ds</sub>A<sub>ds</sub><sup>m</sup>CksTes<sup>m</sup>C ksTes<sup>m</sup>CksAe</td><td> 0</td><td> 706</td>
<td> 785436</td><td> 2217</td><td> 2232</td><td> 11782</td><td> 11797</td><td> AGGTTCTTGG ACTCTC</td><td> Ak<sub>S</sub>G<sub>ds</sub>G<sub>ds</sub>T<sub>ds</sub>T<sub>ds</sub><sup>m</sup>C<sub>ds </sub>T<sub>ds</sub>T<sub>ds</sub>G<sub>ds</sub>G<sub>ds</sub>Aks<sup>m</sup>Ces τ mp יך mp Iks '-'es^ks *-׳e</td><td> 0</td><td> 707</td>
<td> 785437</td><td> 2218</td><td> 2233</td><td> 11783</td><td> 11798</td><td> CAGGTTCTTG GACTCT</td><td><sup>m</sup>CksAdsGdsGdsTdsTds<sup>m </sup>CdsT<sub>ds</sub>T<sub>ds</sub>G<sub>ds</sub>GksA<sub>es</sub><sup>m </sup>p τ mp τ '-'ks<sup>1</sup> es '-'ks<sup>1</sup> e</td><td> 0</td><td> 708</td>
<td> 785468</td><td> 1363</td><td> 1378</td><td> 10684</td><td> 10699</td><td> GGTCTGGCCC TTTTGG</td><td> GksGesTks<sup>m</sup>C<sub>ds</sub>T<sub>ds</sub>G<sub>ds </sub>p mp mp mp τ יד vJds Cds Cds Cdsldsl dsTesTesGksGk</td><td> 13</td><td> 393</td>
<td> 785475</td><td> 2216</td><td> 2231</td><td> 11781</td><td> 11796</td><td> GGTTCTTGGA CTCTCA</td><td> יד יד mp יד p p τ 'Jks'Jes A ks A ds '-'ds A ds A <sub>ds</sub>G<sub>ds</sub>G<sub>ds</sub>A<sub>ds</sub><sup>m</sup>C<sub>ds</sub>T<sub>ds</sub><sup>m</sup>C esTes<sup>m</sup>CksAk</td><td> 60</td><td> 706</td>
<td> 785476</td><td> 2217</td><td> 2232</td><td> 11782</td><td> 11797</td><td> AGGTTCTTGG ACTCTC</td><td> AksGesGksT<sub>ds</sub>T<sub>ds</sub><sup>m</sup>Cds TdsTdsGdsGdsAds<sup>m</sup>Cds mp יך mp יך<sup>1</sup> les '-'eslks Vk</td><td> 0</td><td> 707</td>
<td> 785477</td><td> 2218</td><td> 2233</td><td> 11783</td><td> 11798</td><td> CAGGTTCTTG GACTCT</td><td><sup>m</sup>CksAesGksGdsTdsTds<sup>m </sup>CdsT<sub>ds</sub>T<sub>ds</sub>G<sub>ds</sub>G<sub>ds</sub>A<sub>ds</sub><sup>m </sup>p τ mp τ *-׳es 1 es '-'ks 1 k</td><td> 48</td><td> 708</td>
<td> 785507</td><td> 1362</td><td> 1377</td><td> 10683</td><td> 10698</td><td> GTCTGGCCCT TTTGGA</td><td> p τ mp יד p p m vJks 1 ks '-'ds 1 dsvJdsvJds p mp mp Τ Τ T '-'ds '-'ds '-'ds 1 ds 1 ds 1 ds TksGesGksA<sub>e</sub></td><td> 0</td><td> 455</td>
<td> 785508</td><td> 1363</td><td> 1378</td><td> 10684</td><td> 10699</td><td> GGTCTGGCCC TTTTGG</td><td> GksGk<sub>S</sub>T<sub>ds</sub><sup>m</sup>C<sub>ds</sub>T<sub>ds</sub>G<sub>ds </sub>p mp mp mp τ יד vJds Cds Cds Cdsldsl <sub>ds</sub>TksTe<sub>S</sub>GksGe</td><td> 0</td><td> 393</td>
<td> 785521</td><td> 2215</td><td> 2230</td><td> 11780</td><td> 11795</td><td> GTTCTTGGAC TCTCAA</td><td> P יד יד mp יד p τ 'Jks 1 ks A ds '-'ds A ds A ds'J <sub>ds</sub>G<sub>ds</sub>Ads<sup>m</sup>CdsTds<sup>m</sup>CdsT ks CesAksAe</td><td> 27</td><td> 695</td>
<td> 785522</td><td> 2216</td><td> 2231</td><td> 11781</td><td> 11796</td><td> GGTTCTTGGA CTCTCA</td><td> p p τ τ mp יד יד 'Jks'Jks 1 ds 1 ds '-'ds 1 ds 1 <sub>d</sub>sG<sub>ds</sub>G<sub>d</sub>sA<sub>ds</sub><sup>m</sup>CdsTds<sup>m</sup>C ksTes<sup>m</sup>CksA<sub>e</sub></td><td> 51</td><td> 706</td>
<td> 785523</td><td> 2217</td><td> 2232</td><td> 11782</td><td> 11797</td><td> AGGTTCTTGG ACTCTC</td><td> AksGksG<sub>d</sub>sT<sub>ds</sub>T<sub>d</sub>s<sup>m</sup>C<sub>d</sub>s T<sub>ds</sub>T<sub>d</sub>sG<sub>d</sub>sG<sub>ds</sub>A<sub>d</sub>s<sup>m</sup>C<sub>d</sub>s mp יך mp יך<sup>1</sup> Iks '-'eslks '-׳e</td><td> 41</td><td> 707</td>
<td> 785524</td><td> 2218</td><td> 2233</td><td> 11783</td><td> 11798</td><td> CAGGTTCTTG GACTCT</td><td><sup>m</sup>CksAksGdsGdsTdsTds<sup>m </sup>CdsT<sub>ds</sub>T<sub>ds</sub>G<sub>ds</sub>G<sub>ds</sub>A<sub>ds</sub><sup>m </sup>p יך mp <sup>1</sup>τ<sup>1 </sup>Vks A es '-ks 1 e</td><td> 28</td><td> 708</td>
<td> 785555</td><td> 1362</td><td> 1377</td><td> 10683</td><td> 10698</td><td> GTCTGGCCCT TTTGGA</td><td> τ in י־/1מ τ י~/ vJks 1 ks '-'ds 1 dsvJdsvJds p mp mp Τ <sub>T</sub> T *-ds V/ds *-ds 1 ds 1 es 1 es TesGesGksAk</td><td> 0</td><td> 455</td>
<td> 785562</td><td> 2215</td><td> 2230</td><td> 11780</td><td> 11795</td><td> GTTCTTGGAC TCTCAA</td><td> י~/ τ τ י־/1מ יד τ י~/ vJks 1 ks 1 ds '-'ds 1 ds 1 dsvJ <sub>ds</sub>G<sub>ds</sub>A<sub>ds</sub><sup>m</sup>CdsTes<sup>m</sup>CeST es CesAksAk</td><td> 8</td><td> 695</td>
<td> 785563</td><td> 2216</td><td> 2231</td><td> 11781</td><td> 11796</td><td> GGTTCTTGGA CTCTCA</td><td> p p τ יד mp τ יד kJkskJks 1 ds A ds '-'ds A ds A <sub>d</sub>sG<sub>d</sub>sG<sub>ds</sub>A<sub>ds</sub><sup>m</sup>CesTes<sup>m</sup>C esT<sub>es</sub><sup>m</sup>CksAk</td><td> 54</td><td> 706</td>
<td> 785564</td><td> 2217</td><td> 2232</td><td> 11782</td><td> 11797</td><td> AGGTTCTTGG ACTCTC</td><td> AksGksG<sub>ds</sub>T<sub>d</sub>sT<sub>d</sub>s<sup>m</sup>C<sub>ds </sub>T<sub>d</sub>sT<sub>ds</sub>G<sub>d</sub>sG<sub>d</sub>sAes<sup>m</sup>CesT mp יך mp es '-'es^ks Vk</td><td> 17</td><td> 707</td>
<td> 785600</td><td> 1361</td><td> 1376</td><td> 10682</td><td> 10697</td><td> TCTGGCCCTT TTGGAA</td><td> T mp τ P P mp Iks Cks 1 dsVJdsVJds Cds mp mp τ τ τ τ '-'ds '-'ds 1 ds<sup>1</sup> ds<sup>1</sup> ks<sup>1</sup> es GksGesAksAk</td><td> 0</td><td> 454</td>
<td> 785601</td><td> 1362</td><td> 1377</td><td> 10683</td><td> 10698</td><td> GTCTGGCCCT TTTGGA</td><td> p τ mp τ P P m vJks 1 ks '-'ds 1 dsvJdsvJds יד יד יד p mp mp '-'ds '-'ds '-'ds 1 ds 1 ks 1 es TksGesGksAk</td><td> 0</td><td> 455</td>
<td> 785602</td><td> 1363</td><td> 1378</td><td> 10684</td><td> 10699</td><td> GGTCTGGCCC TTTTGG</td><td> GksGksT<sub>ds</sub><sup>m</sup>C<sub>d</sub>sT<sub>ds</sub>G<sub>d</sub>s p mp mp mp τ יד vids '-'ds '-'ds '-'ds 1 ks 1 esTksTesGksGk</td><td> 0</td><td> 393</td>
<td> 785621</td><td> 2214</td><td> 2229</td><td> 11779</td><td> 11794</td><td> TTCTTGGACT CTCAAG</td><td> τ יד mp τ יד p p 1 ks A ks '-'ds A ds A ds^ds^J a mp יך mp יך m ds^ds V/ds 1 ds '-'ks 1 es CksAesAksGk</td><td> 0</td><td> 705</td>
<td> 785622</td><td> 2215</td><td> 2230</td><td> 11780</td><td> 11795</td><td> GTTCTTGGAC TCTCAA</td><td> י~׳/ יד mp τ יד p τ kJks 1 ks A ds '-'ds A ds A ds^J <sub>ds</sub>G<sub>ds</sub>A<sub>ds</sub><sup>m</sup>CdsTks<sup>m</sup>CeST ks CesAksAk</td><td> 0</td><td> 695</td>
<td> 785623</td><td> 2216</td><td> 2231</td><td> 11781</td><td> 11796</td><td> GGTTCTTGGA CTCTCA</td><td> p p τ τ mp τ יד 'Jks'Jks 1 ds 1 ds '-'ds 1 ds 1 <sub>d</sub>sG<sub>d</sub>sG<sub>ds</sub>A<sub>ds</sub><sup>m</sup>CksTes<sup>m</sup>C ksTes<sup>m</sup>CksAk</td><td> 0</td><td> 706</td>
<td> 785624</td><td> 2217</td><td> 2232</td><td> 11782</td><td> 11797</td><td> AGGTTCTTGG ACTCTC</td><td> AksGksG<sub>d</sub>sT<sub>ds</sub>T<sub>d</sub>s<sup>m</sup>Cds TdsTdsGdsGdsAks<sup>m</sup>Ces τ mp יך mp 1 ks '-'es A ks '-'k</td><td> 0</td><td> 707</td>
<td> 785625</td><td> 2218</td><td> 2233</td><td> 11783</td><td> 11798</td><td> CAGGTTCTTG GACTCT</td><td><sup>m</sup>CksAksGdsGdsTdsTds<sup>m </sup>CdsT<sub>ds</sub>T<sub>d</sub>sG<sub>d</sub>sGksAes<sup>m </sup>p τ mp τ '-'ks A es '-'ks A k</td><td> 0</td><td> 708</td>
<td> 785664</td><td> 1362</td><td> 1377</td><td> 10683</td><td> 10698</td><td> GTCTGGCCCT TTTGGA</td><td> p τ mp τ P P m vJks 1 ks '-'ds 1 dsvJdsvJds p mp mp τ Τ T '-'ds '-'ds '-'ds 1 ds 1 ds 1 es TesGesGksAk</td><td> 0</td><td> 455</td>
<td> 785671</td><td> 2215</td><td> 2230</td><td> 11780</td><td> 11795</td><td> GTTCTTGGAC TCTCAA</td><td> י~׳/ יד mp τ יד p τ kJks 1 ks A ds '-'ds A ds A ds^J <sub>d</sub>sG<sub>d</sub>sA<sub>ds</sub><sup>m</sup>C<sub>d</sub>sT<sub>ds</sub><sup>m</sup>CesT es CesAksAk</td><td> 22</td><td> 695</td>
<td> 785672</td><td> 2216</td><td> 2231</td><td> 11781</td><td> 11796</td><td> GGTTCTTGGA CTCTCA</td><td> p p τ τ mp τ יד 'Jks'Jks 1 ds 1 ds '-'ds 1 ds 1 <sub>d</sub>sG<sub>d</sub>sG<sub>d</sub>sA<sub>ds</sub><sup>m</sup>CdsTes<sup>m</sup>C esTes<sup>m</sup>CksAk</td><td> 48</td><td> 706</td>
<td> 785673</td><td> 2217</td><td> 2232</td><td> 11782</td><td> 11797</td><td> AGGTTCTTGG ACTCTC</td><td> AksGksG<sub>d</sub>sT<sub>ds</sub>T<sub>d</sub>s<sup>m</sup>C<sub>d</sub>s T<sub>ds</sub>T<sub>d</sub>sG<sub>ds</sub>G<sub>d</sub>A<sub>d</sub>s<sup>m</sup>Ces mp יך mp יך<sup>,</sup> les '-'eslks Vk</td><td> 0</td><td> 707</td>
<td> 785694</td><td> 1362</td><td> 1377</td><td> 10683</td><td> 10698</td><td> GTCTGGCCCT TTTGGA</td><td> m י~/ י~/ τ י־/1מ τ י~/ vJks 1 ks '-'ds 1 dsvJdsvJds p me me Τ Τ T '-'ds '-'ds '-'ds 1 ds<sup>1</sup> ds<sup>1</sup> ks TdsGksGdsAk</td><td> 0</td><td> 455</td>
<td> 785701</td><td> 2215</td><td> 2230</td><td> 11780</td><td> 11795</td><td> GTTCTTGGAC TCTCAA</td><td> י~/ τ τ י־/1מ יד τ י~/ vJks 1 ks 1 ds '-'ds 1 ds 1 dsvJ <sub>ds</sub>G<sub>ds</sub>Ads<sup>m</sup>CdsTds<sup>m</sup>CkST ds CksAdsAk</td><td> 20</td><td> 695</td>
<td> 785702</td><td> 2216</td><td> 2231</td><td> 11781</td><td> 11796</td><td> GGTTCTTGGA CTCTCA</td><td> יד τ י־/1מ יד τ י~/ י~/ vJksvJks 1 ds 1 ds '-'ds 1 ds 1 dsGdsGdsAdsTdsTksT <sub>ds</sub>Tks<sup>m</sup>C<sub>ds</sub>Ak</td><td> 29</td><td> 706</td>
<td> 785703</td><td> 2217</td><td> 2232</td><td> 11782</td><td> 11797</td><td> AGGTTCTTGG ACTCTC</td><td> Ak<sub>S</sub>GksG<sub>ds</sub>T<sub>ds</sub>T<sub>ds</sub><sup>m</sup>C<sub>ds</sub> T<sub>ds</sub>T<sub>ds</sub>G<sub>ds</sub>G<sub>ds</sub>Ads<sup>m</sup>Ck<sub>S</sub> 1 ds '-'ks 1 ds '-'k</td><td> 36</td><td> 707</td>
<td> 785732</td><td> 1362</td><td> 1377</td><td> 10683</td><td> 10698</td><td> GTCTGGCCCT TTTGGA</td><td> /~י τ me τ U U m 'Jks 1 ks '-'ds A ds^JdsNJds p mp mp τ τ τ '-'ds '-'ds '-'ds 1 ds 1 ds 1 ks TesGksGesAk</td><td> 0</td><td> 455</td>
<td> 785733</td><td> 1363</td><td> 1378</td><td> 10684</td><td> 10699</td><td> GGTCTGGCCC TTTTGG</td><td> Gk<sub>S</sub>Gk<sub>S</sub>T<sub>ds</sub><sup>m</sup>C<sub>ds</sub>T<sub>ds</sub>G<sub>ds </sub>p mp mp mp τ τ 'Jds '-'ds '-'ds '-'ds<sup>1</sup> ds<sup>1 </sup>ksTesTksGesGk</td><td> 3</td><td> 393</td>
<td> 785746</td><td> 2215</td><td> 2230</td><td> 11780</td><td> 11795</td><td> GTTCTTGGAC TCTCAA</td><td> י~/ יד τ י־/1מ יד τ י~/ vJks 1 ks 1 ds '-'ds 1 ds 1 dsvJ <sub>ds</sub>G<sub>ds</sub>Ads<sup>m</sup>CdsTds<sup>m</sup>CkST mp, A A, es '-׳ks^'es^'k</td><td> 31</td><td> 695</td>
<td> 785747</td><td> 2216</td><td> 2231</td><td> 11781</td><td> 11796</td><td> GGTTCTTGGA CTCTCA</td><td> יד τ י־/1מ יד τ י~/ י~/ vJksvJks 1 ds 1 ds '-'ds 1 ds 1 dsGdsGdsAdsTdsTksT T A esAks '-׳es^'k</td><td> 0</td><td> 706</td>
<td> 785748</td><td> 2217</td><td> 2232</td><td> 11782</td><td> 11797</td><td> AGGTTCTTGG ACTCTC</td><td> Ak<sub>S</sub>GksG<sub>ds</sub>T<sub>ds</sub>T<sub>ds</sub><sup>m</sup>C<sub>ds</sub> T<sub>ds</sub>T<sub>ds</sub>G<sub>ds</sub>G<sub>ds</sub>Ads<sup>m</sup>Ck<sub>S</sub> mp יך mp יך 1 es '-'ks 1 es Vk</td><td> 38</td><td> 707</td>
<td> 785749</td><td> 2218</td><td> 2233</td><td> 11783</td><td> 11798</td><td> CAGGTTCTTG GACTCT</td><td><sup>m</sup>CksAksGdsGdsTdsTds<sup>m </sup>CdsT<sub>ds</sub>T<sub>ds</sub>G<sub>ds</sub>G<sub>ds</sub>Aks<sup>m</sup> יך mp יך<sup>,</sup> p '-'es^ks '-'es^k</td><td> 0</td><td> 708</td>
<td> 785781</td><td> 1363</td><td> 1378</td><td> 10684</td><td> 10699</td><td> GGTCTGGCCC TTTTGG</td><td> Gk<sub>S</sub>Gk<sub>S</sub>Tk<sub>S</sub><sup>m</sup>CdsTdsGds p mp mp mp τ τ 'Jds '-'ds '-'ds '-'ds<sup>1</sup> ds<sup>1 </sup>kST<sub>ds</sub>TksG<sub>ds</sub>Gk</td><td> 0</td><td> 393</td>
<td> 785788</td><td> 2216</td><td> 2231</td><td> 11781</td><td> 11796</td><td> GGTTCTTGGA CTCTCA</td><td> יד τ י־/1מ יד τ י~/ י~/ vJksvJks 1 ks 1 ds '-'ds 1 ds 1 dsGdsG<sub>d</sub>sA<sub>ds</sub><sup>m</sup>CdsTks<sup>m</sup>C dSTks<sup>m</sup>C<sub>ds</sub>A<sub>k</sub></td><td> 28</td><td> 706</td>
<td> 785789</td><td> 2217</td><td> 2232</td><td> 11782</td><td> 11797</td><td> AGGTTCTTGG ACTCTC</td><td> Ak<sub>S</sub>GksGksT<sub>ds</sub>T<sub>ds</sub><sup>m</sup>Cds TdsTdsGdsGdsAds<sup>m</sup>CkS τ mp τ mp 1 ds '-'ks<sup>1</sup> ds '-'k</td><td> 0</td><td> 707</td>
<td> 785790</td><td> 2218</td><td> 2233</td><td> 11783</td><td> 11798</td><td> CAGGTTCTTG GACTCT</td><td><sup>m</sup>CksAksGksGdsTdsTds<sup>m </sup>CdST<sub>ds</sub>T<sub>ds</sub>GdsGdsAks<sup>m </sup>'-'ds 1 ks '-'ds 1 k</td><td> 0</td><td> 708</td>
<td> 785820</td><td> 1362</td><td> 1377</td><td> 10683</td><td> 10698</td><td> GTCTGGCCCT TTTGGA</td><td> /~י τ me τ U U m 'Jks 1 ks '-'ks A ds^JdsNJds p mp mp τ τ τ '-'ds '-'ds '-'ds 1 ds 1 ds 1 ks TesGksGesAk</td><td> 0</td><td> 455</td>
<td> 785821</td><td> 1363</td><td> 1378</td><td> 10684</td><td> 10699</td><td> GGTCTGGCCC TTTTGG</td><td> GksGk<sub>S</sub>Tk<sub>S</sub><sup>m</sup>CdsTdsGds p mp mp mp τ τ 'Jds '-'ds '-'ds '-'ds<sup>1</sup> ds<sup>1 </sup>ksTesTksGesGk</td><td> 2</td><td> 393</td>
<td> 785834</td><td> 2215</td><td> 2230</td><td> 11780</td><td> 11795</td><td> GTTCTTGGAC TCTCAA</td><td> י~/ יד τ י־/1מ יד τ י~/ vJks 1 ks 1 ks '-'ds 1 ds 1 dsvJ dsGdsAds<sup>m</sup>CdsT<sub>ds</sub><sup>m</sup>CksT es CksAesAk</td><td> 0</td><td> 695</td>
<td> 785835</td><td> 2216</td><td> 2231</td><td> 11781</td><td> 11796</td><td> GGTTCTTGGA CTCTCA</td><td> יד יד י־/1מ τ τ י~/ י~/ vJksvJks 1 ks 1 ds '-'ds 1 ds 1 dsGdsGdsA<sub>d</sub>s<sup>m</sup>CdsTks<sup>m</sup>C <sub>es</sub>Tks<sup>m</sup>CesAk</td><td> 25</td><td> 706</td>
<td> 785836</td><td> 2217</td><td> 2232</td><td> 11782</td><td> 11797</td><td> AGGTTCTTGG ACTCTC</td><td> Ak<sub>s</sub>GksGksTd<sub>s</sub>Tds<sup>m</sup>Cds TdsTdsGdsGdsAds<sup>m</sup>Cks τ mp יך mp 1 es '-'ks<sup>1</sup> es Me</td><td> 8</td><td> 707</td>
<td> 785837</td><td> 2218</td><td> 2233</td><td> 11783</td><td> 11798</td><td> CAGGTTCTTG GACTCT</td><td><sup>m</sup>CksA<sub>ks</sub>GksGdsTdsTds<sup>m </sup>CdsTdsTdsGdsGdsAks<sup>111 </sup>p יך mp <sup>1</sup>τ<sup>1 </sup>'-'es^ks '-'es^k</td><td> 0</td><td> 708</td>
<td> 785869</td><td> 1363</td><td> 1378</td><td> 10684</td><td> 10699</td><td> GGTCTGGCCC TTTTGG</td><td> GksGk<sub>S</sub>Tk<sub>S</sub><sup>m</sup>CdsTdsGds /~י־/111 י ιη/χ ιη/χ τ יד vJds Cds Cds Cdsldsl dsTksTesGksGe</td><td> 17</td><td> 393</td>
<td> 785876</td><td> 2216</td><td> 2231</td><td> 11781</td><td> 11796</td><td> GGTTCTTGGA CTCTCA</td><td> יד יד יד τ י~/ י~/ 'Jks'Jks 1 ks A ds '-'ds A ds A <sub>ds</sub>Gd<sub>S</sub>Gd<sub>S</sub>Ad<sub>S</sub><sup>m</sup>CdSTds<sup>m</sup>C ksTes<sup>m</sup>CksAe</td><td> 48</td><td> 706</td>
<td> 785877</td><td> 2217</td><td> 2232</td><td> 11782</td><td> 11797</td><td> AGGTTCTTGG ACTCTC</td><td> Ak<sub>S</sub>GksGksTd<sub>S</sub>Tds<sup>m</sup>Cds TdsTdsGdsGd<sub>S</sub>Ad<sub>S</sub><sup>m</sup>Cds י־/111 p־<sup>1</sup> mp יך<sup>1</sup> Iks '-'es^ks '-׳e</td><td> 0</td><td> 707</td>
<td> 785878</td><td> 2218</td><td> 2233</td><td> 11783</td><td> 11798</td><td> CAGGTTCTTG GACTCT</td><td><sup>m</sup>CksAksGksGdsTdsTds<sup>m </sup>CdsTdSTd<sub>S</sub>GdsGdsAd<sub>S</sub><sup>m </sup>p τ mp τ '-'ks<sup>1</sup> es '-'ks<sup>1</sup> e</td><td> 1</td><td> 708</td>
<td> 785908</td><td> 1362</td><td> 1377</td><td> 10683</td><td> 10698</td><td> GTCTGGCCCT TTTGGA</td><td> /~י τ τ in vJks 1 ks '-'ks 1 dsvJdsvJds p mp mp τ τ τ '-'ds '-'ds '-'ds 1 ds 1 ds 1 ds TksGksGksA<sub>e</sub></td><td> 0</td><td> 455</td>
<td> 785909</td><td> 1363</td><td> 1378</td><td> 10684</td><td> 10699</td><td> GGTCTGGCCC TTTTGG</td><td> GksGk<sub>S</sub>Tk<sub>S</sub><sup>m</sup>CdsTdsGds /~י־/111 י ιη/χ ιη/χ τ יד vJds Cds Cds Cdsldsl dsTksTksGksGe</td><td> 0</td><td> 393</td>
<td> 785922</td><td> 2215</td><td> 2230</td><td> 11780</td><td> 11795</td><td> GTTCTTGGAC TCTCAA</td><td> 'r יד τ יד τ י~/ 'Jks 1 ks A ks '-'ds A ds A ds'J dsGdsAds<sup>m</sup>CdsTds<sup>m</sup>CdsT ks CksAksAe</td><td> 37</td><td> 695</td>
<td> 785923</td><td> 2216</td><td> 2231</td><td> 11781</td><td> 11796</td><td> GGTTCTTGGA CTCTCA</td><td> יד יד י־/1מ יד τ י~/ י~/ 'Jks'Jks 1 ks 1 ds '-'ds 1 ds 1 dsGdsGdsAds<sup>m</sup>CdsTds<sup>m</sup>C ksTks<sup>m</sup>CksAe</td><td> 0</td><td> 706</td>
<td> 785924</td><td> 2217</td><td> 2232</td><td> 11782</td><td> 11797</td><td> AGGTTCTTGG ACTCTC</td><td> Ak<sub>S</sub>GksGksTd<sub>S</sub>Tds<sup>m</sup>Cds TdsTdsGdsGdsAds<sup>m</sup>Cds τ mp τ mp Iks '-'ks^ks '-'e</td><td> 19</td><td> 707</td>
<td> 785925</td><td> 2218</td><td> 2233</td><td> 11783</td><td> 11798</td><td> CAGGTTCTTG GACTCT</td><td><sup>m</sup>CksAksGksGdsTdsTds<sup>m </sup>CdsTdSTd<sub>S</sub>GdsGdsAd<sub>S</sub><sup>m </sup>p τ mp τ '-'ks A ks '-'ks A e</td><td> 0</td><td> 708</td>
<td> 785938</td><td> N/A</td><td> N/A</td><td> 6548</td><td> 6563</td><td> CCAATTTTGC ATTCCA</td><td><sup>m</sup>Cks<sup>m</sup>CksAksAdsTdsTds TdsTdSGds<sup>m</sup>CdsAdSTd<sub>S</sub>T ks<sup>m</sup>Cks<sup>m</sup>CksA<sub>e</sub></td><td> 71</td><td> 1242</td>
Table 22
Inhibition of IRF5 mRNA by modified oligonucleotides targeting SEQ ID NO: 1 and 2
<td> Compound Number</td><td> SEQ ID NO: 1 Start Site</td><td> SEQ ID NO: 1 Stop Site</td><td> SEQ ID NO: 2 Start Site</td><td> SEQ ID NO: 2 Stop Site</td><td> Sequence (5' to 3')</td><td> Chemistry Notation</td><td> (% Inhibition)</td><td> SEQ ID NO</td>
<td> 728708</td><td> 1308</td><td> 1323</td><td> 10541</td><td> 10556</td><td> AGCTTGGTCT TGACCT</td><td> Ak<sub>S</sub>Gks<sup>m</sup>CksTd<sub>S</sub>TdsGds /~י τ τ τ 'Jds A ds '-'ds A ds A ds'Jds Ads^ks^ksTk</td><td> 12</td><td> 436</td>
<td> 728898</td><td> 1769</td><td> 1784</td><td> 11334</td><td> 11349</td><td> GCTGTCACAT CTCCAC</td><td> vJks '-'ks 1 ksvJds 1 ds '-'ds A<sub>ds</sub><sup>m</sup>CdsAdSTdS<sup>m</sup>CdSTd<sub>S </sub>'-'ds '-'ksAks M</td><td> 33</td><td> 637</td>
<td> 729049</td><td> 2230</td><td> 2245</td><td> 11795</td><td> 11810</td><td> TTATTTCTGCT CCAGG</td><td> TksTksAk<sub>S</sub>TdsTdsTds<sup>m</sup>C T /-י τ m ds 1 dskJds V/ds 1 ds '-'ds CdsAksGksGk</td><td> 55</td><td> 718</td>
<td> 729589</td><td> N/A</td><td> N/A</td><td> 9259</td><td> 9274</td><td> CCTTCTGCAG GGAGTC</td><td> '-'ks '-'ks 1 ks 1 ds '-'ds 1 d <sub>s</sub>Gds<sup>m</sup>Cd<sub>S</sub>Ad<sub>S</sub>GdsGdsGds AdsGksTksTk</td><td> 0</td><td> 1184</td>
<td> 785372</td><td> 1767</td><td> 1782</td><td> 11332</td><td> 11347</td><td> TGTCACATCT CCACAT</td><td> Tk<sub>S</sub>G<sub>ds</sub>Td<sub>S</sub><sup>m</sup>CdSAds<sup>m</sup>CdS Ads Ids '-'ds Ids Ms C ksA<sub>es</sub><sup>m</sup>CksAesTk</td><td> 16</td><td> 635</td>
<td> 785373</td><td> 1769</td><td> 1784</td><td> 11334</td><td> 11349</td><td> GCTGTCACAT CTCCAC</td><td> vJks '-'ds 1 dsGis 1 ds '-'ds A<sub>ds</sub><sup>m</sup>CdSAdSTds<sup>m</sup>CdSTk<sub>S</sub> Ms VksAes '-'k</td><td> 17</td><td> 637</td>
<td> 785383</td><td> 2228</td><td> 2243</td><td> 11793</td><td> 11808</td><td> ATTTCTGCTCC AGGTT</td><td> AksTd<sub>S</sub>Td<sub>S</sub>Td<sub>S</sub><sup>m</sup>CdsTdSG ds '-'ds<sup>1</sup> ds '-'ds '-'ds-Aes GesGksTesTk</td><td> 39</td><td> 696</td>
<td> 785384</td><td> 2230</td><td> 2245</td><td> 11795</td><td> 11810</td><td> TTATTTCTGCT CCAGG</td><td> TksTdsAdsTdsTdsTds<sup>m</sup>C T /-י τ m ds 1 dskJds V/ds 1 ds '-'ks CesAfcsGesGk</td><td> 0</td><td> 718</td>
<td> 785400</td><td> N/A</td><td> N/A</td><td> 9257</td><td> 9272</td><td> TTCTGCAGGG AGTCAG</td><td> י~/1מ י~/ τ י~/1מ τ τ 1 ks 1 ds '-'ds 1 dsvJds '-'ds AdsGdsGdsGdsAdsGksT e<sub>S</sub><sup>m</sup>C<sub>ks</sub>A<sub>es</sub>Gk</td><td> 4</td><td> 1255</td>
<td> 785401</td><td> N/A</td><td> N/A</td><td> 9259</td><td> 9274</td><td> CCTTCTGCAG GGAGTC</td><td> '-'ks '-'ds 1 ds<sup>1</sup> ds '-'ds<sup>1</sup> d sGds CdsAdsGdsGdsGks AesGksTesTk</td><td> 0</td><td> 1184</td>
<td> 785427</td><td> 1767</td><td> 1782</td><td> 11332</td><td> 11347</td><td> TGTCACATCT CCACAT</td><td> Tk<sub>S</sub>Gd<sub>S</sub>T<sub>ds</sub><sup>m</sup>CdsAdS<sup>m</sup>CdS י>111 יך יך a -^-ds<sup>1</sup> ds '-'ds<sup>1</sup> ds '-'ks '-׳ esAks<sup>m</sup>CesAksT<sub>e</sub></td><td> 0</td><td> 635</td>
<td> 785428</td><td> 1769</td><td> 1784</td><td> 11334</td><td> 11349</td><td> GCTGTCACAT CTCCAC</td><td> י~/1מ τ י~/ τ י~/ vJks '-'ds 1 dsMis 1 ds '-'ds a mp a יך mp יך Akds VtfsAvds a ds Mes<sup>1</sup> es Mes MsAks M</td><td> 0</td><td> 637</td>
<td> 785438</td><td> 2228</td><td> 2243</td><td> 11793</td><td> 11808</td><td> ATTTCTGCTCC AGGTT</td><td> AksTd<sub>S</sub>Td<sub>S</sub>Td<sub>S</sub><sup>m</sup>CdsTd<sub>S</sub>G mpv τ mpv mpv a ds '-'ds A ds '-'ds Messes GksGesTksTe</td><td> 13</td><td> 696</td>
<td> 785439</td><td> 2230</td><td> 2245</td><td> 11795</td><td> 11810</td><td> TTATTTCTGCT CCAGG</td><td> TksTdsAdsTdsTdsTds<sup>m</sup>C dsAdskJds Mis-l-ks Ms CksAesGksGe</td><td> 0</td><td> 718</td>
<td> 785455</td><td> N/A</td><td> N/A</td><td> 9257</td><td> 9272</td><td> TTCTGCAGGG AGTCAG</td><td> τ τ me τ /~י me 1 ks 1 ds '-'ds 1 dsvJds '-'ds AdsGdsGdsGdsAksGesT ^CesAksGe</td><td> 0</td><td> 1255</td>
<td> 785456</td><td> N/A</td><td> N/A</td><td> 9259</td><td> 9274</td><td> CCTTCTGCAG GGAGTC</td><td> me me τ T me τ Cks '-'ds 1 ds 1 ds '-'ds 1 d sGds CdsAdsGdsGksGes AksG<sub>e</sub>sTks<sup>m</sup>C<sub>e</sub></td><td> 0</td><td> 1184</td>
<td> 785472</td><td> 1769</td><td> 1784</td><td> 11334</td><td> 11349</td><td> GCTGTCACAT CTCCAC</td><td> e> me τ /~י τ me vJks Ces 1 ksvJds 1 ds '-'ds A<sub>ds</sub><sup>m</sup>CdsAdSTdS<sup>m</sup>CdSTd<sub>S</sub> me me a me Ves VesAks Vk</td><td> 0</td><td> 637</td>
<td> 785478</td><td> 2230</td><td> 2245</td><td> 11795</td><td> 11810</td><td> TTATTTCTGCT CCAGG</td><td> T<sub>ks</sub>T<sub>es</sub>A<sub>ks</sub>T<sub>ds</sub>T<sub>ds</sub>T<sub>ds</sub><sup>m</sup>C me m יך me י~/ יך ds 1 dsvJds '-'ds 1 ds '-'ds CesAesGksGk</td><td> 56</td><td> 718</td>
<td> 785488</td><td> N/A</td><td> N/A</td><td> 9259</td><td> 9274</td><td> CCTTCTGCAG GGAGTC</td><td> יך me יך יך me me '-'ks Ves 1 ks<sup>1</sup> ds '-'ds<sup>1</sup> d <sub>s</sub>Gds<sup>m</sup>Cd<sub>S</sub>Ad<sub>S</sub>GdsGdsGds AesGesTksTk</td><td> 14</td><td> 1184</td>
<td> 785515</td><td> 1768</td><td> 1783</td><td> 11333</td><td> 11348</td><td> CTGTCACATC TCCACA</td><td><sup>m</sup>CksT<sub>ks</sub>GdsTds<sup>m</sup>CdsAds <sup>m</sup>r δ τ <sup>m</sup>r τ <sup>m</sup>r '-'dsAds<sup>1</sup> ds '-'ds<sup>1</sup> ds '-׳ ds^ksAes^ksAe</td><td> 19</td><td> 636</td>
<td> 785516</td><td> 1769</td><td> 1784</td><td> 11334</td><td> 11349</td><td> GCTGTCACAT CTCCAC</td><td> e> me τ /~י τ vJks '-'ks 1 dsvJds 1 ds '-'ds Ads<sup>m</sup>CdsAdsTds<sup>m</sup>CdsTds me me a me '-'ks '-׳esAks Ve</td><td> 8</td><td> 637</td>
<td> 785525</td><td> 2229</td><td> 2244</td><td> 11794</td><td> 11809</td><td> TATTTCTGCTC CAGGT</td><td> TksAk<sub>S</sub>TdsTdsTds<sup>m</sup>CdsT dsvJds '-'ds 1 ds '-'ds '-'ds AksGesGksT<sub>e</sub></td><td> 49</td><td> 717</td>
<td> 785526</td><td> 2230</td><td> 2245</td><td> 11795</td><td> 11810</td><td> TTATTTCTGCT CCAGG</td><td> Tk<sub>S</sub>Tk<sub>S</sub>A<sub>ds</sub>T<sub>ds</sub>T<sub>ds</sub>T<sub>ds</sub><sup>m</sup>C ds 1 dsvJds '-'ds 1 ds '-'ds CksAesGksGe</td><td> 26</td><td> 718</td>
<td> 785543</td><td> N/A</td><td> N/A</td><td> 9258</td><td> 9273</td><td> CTTCTGCAGG GAGTCA</td><td> me τ τ <sup>m</sup>c τ e '-'ks 1 ks<sup>1</sup> ds '-'ds<sup>1</sup> ds'-Jds <sup>m</sup>CdsAdSGdsGdsGdsAds GksTes<sup>m</sup>CksAe</td><td> 8</td><td> 1256</td>
<td> 785544</td><td> N/A</td><td> N/A</td><td> 9259</td><td> 9274</td><td> CCTTCTGCAG GGAGTC</td><td> me τ T τ '-'ks '-'ks 1 ds 1 ds '-'ds 1 d sGds CdsAdsGdsGdsGds Ak<sub>s</sub>Ge<sub>S</sub>Tks<sup>m</sup>Ce</td><td> 0</td><td> 1184</td>
<td> 785559</td><td> 1768</td><td> 1783</td><td> 11333</td><td> 11348</td><td> CTGTCACATC TCCACA</td><td><sup>m</sup>CksT<sub>ks</sub>GdsTds<sup>m</sup>CdAds V^dsAds 1 ds '-'ds 1 es ־s<sup>m</sup>CeSAes<sup>m</sup>CksAk</td><td> 11</td><td> 636</td>
<td> 785565</td><td> 2229</td><td> 2244</td><td> 11794</td><td> 11809</td><td> TATTTCTGCTC CAGGT</td><td> TksAk<sub>S</sub>TdsTdsTds<sup>m</sup>CdsT dsvJds '-'ds 1 ds Ves Ves AesGesGksTk</td><td> 43</td><td> 717</td>
<td> 785574</td><td> N/A</td><td> N/A</td><td> 9258</td><td> 9273</td><td> CTTCTGCAGG GAGTCA</td><td> τ T τ /~י Cks 1 ks 1 ds '-'ds 1 dsvJds CdsAdsGdsGdsGesAes GesTesTksAk</td><td> 0</td><td> 1256</td>
<td> 785612</td><td> 1767</td><td> 1782</td><td> 11332</td><td> 11347</td><td> TGTCACATCT CCACAT</td><td> T<sub>ks</sub>G<sub>ks</sub>T<sub>ds</sub><sup>m</sup>CdsAds<sup>m</sup>Cds Ads 1 ds '-'ds 1 ds '-'ks C esAks<sup>m</sup>CesAksTk</td><td> 0</td><td> 635</td>
<td> 785613</td><td> 1768</td><td> 1783</td><td> 11333</td><td> 11348</td><td> CTGTCACATC TCCACA</td><td><sup>m</sup>CksTksGdsTds<sup>m</sup>CdAds <sup>m</sup>r δ τ <sup>m</sup>r τ <sup>m</sup>r '-'ds-^-ds<sup>1</sup> ds '-'ds<sup>1</sup> ks '-׳ ־s<sup>m</sup>CksA<sub>es</sub><sup>m</sup>CkAk</td><td> 0</td><td> 636</td>
<td> 785614</td><td> 1769</td><td> 1784</td><td> 11334</td><td> 11349</td><td> GCTGTCACAT CTCCAC</td><td> vJks '-'ks 1 dsvJds 1 ds '-'ds A<sub>ds</sub><sup>m</sup>CdsAdsTds<sup>m</sup>CksT<sub>es </sub>Cks '-'esAks Ck</td><td> 29</td><td> 637</td>
<td> 785626</td><td> 2228</td><td> 2243</td><td> 11793</td><td> 11808</td><td> ATTTCTGCTCC AGGTT</td><td> AksTksTdsTds<sup>m</sup>CdsTdsG ds '-'ds<sup>1</sup> ds '-'ds '-׳ks^'es GksGesTksTk</td><td> 6</td><td> 696</td>
<td> 785627</td><td> 2229</td><td> 2244</td><td> 11794</td><td> 11809</td><td> TATTTCTGCTC CAGGT</td><td> TksAk<sub>S</sub>TdsTdsTds<sup>m</sup>CdsT dskJds V/ds 1 ds '-'ks Ves AksGesGksTk</td><td> 0</td><td> 717</td>
<td> 785628</td><td> 2230</td><td> 2245</td><td> 11795</td><td> 11810</td><td> TTATTTCTGCT CCAGG</td><td> Tk<sub>S</sub>TksAdsTdsTdsTds<sup>m</sup>C dsAdskJds V/ds^ks Ves CksAesGksGk</td><td> 0</td><td> 718</td>
<td> 785651</td><td> N/A</td><td> N/A</td><td> 9257</td><td> 9272</td><td> TTCTGCAGGG AGTCAG</td><td> mp י~/ יך mp יך יך 1 ks 1 ks '-'ds<sup>1</sup> dskJds '-'ds AdsGdsGdsGdsAksGesT k<sub>S</sub><sup>m</sup>CesAksGk</td><td> 0</td><td> 1255</td>
<td> 785652</td><td> N/A</td><td> N/A</td><td> 9258</td><td> 9273</td><td> CTTCTGCAGG GAGTCA</td><td> י~/ ψ י־/!!! mz-A rp rp '-'ks 1 ks 1 ds '-'ds<sup>1</sup> dskJds CdsAdsGdsGdsGksAes Gk<sub>S</sub>T<sub>es</sub><sup>m</sup>Ck<sub>S</sub>Ak</td><td> 0</td><td> 1256</td>
<td> 785653</td><td> N/A</td><td> N/A</td><td> 9259</td><td> 9274</td><td> CCTTCTGCAG GGAGTC</td><td> τ י־/במ τ τ י/111 י־/111 '-'ks '-'ks 1 ds 1 ds '-'ds 1 d sGds CdsAdsGdsGksGes Ak<sub>S</sub>Ge<sub>S</sub>Tks<sup>m</sup>Ck</td><td> 0</td><td> 1184</td>
<td> 785668</td><td> 1768</td><td> 1783</td><td> 11333</td><td> 11348</td><td> CTGTCACATC TCCACA</td><td><sup>m</sup>CksTksGdsTds<sup>m</sup>CdsAdS CdsAdslds '-'dsIds C ־s<sup>m</sup>CeSAes<sup>m</sup>CksAk</td><td> 10</td><td> 636</td>
<td> 785674</td><td> 2229</td><td> 2244</td><td> 11794</td><td> 11809</td><td> TATTTCTGCTC CAGGT</td><td> TksAk<sub>S</sub>TdsTdsTds<sup>m</sup>CdsT dskJds V/ds 1 ds '-'ds Ves AcsGesGksTk</td><td> 44</td><td> 717</td>
<td> 785683</td><td> N/A</td><td> N/A</td><td> 9258</td><td> 9273</td><td> CTTCTGCAGG GAGTCA</td><td> mz-A rp rp rp '-'ks 1 ks 1 ds '-'ds<sup>1</sup> dskJds CdsAdsGdsGdsGdsAes GesT<sub>e</sub>s<sup>m</sup>CksA<sub>k</sub></td><td> 0</td><td> 1256</td>
<td> 785698</td><td> 1768</td><td> 1783</td><td> 11333</td><td> 11348</td><td> CTGTCACATC TCCACA</td><td><sup>m</sup>CksTkSGdSTdS<sup>m</sup>CdSA<sub>ds </sub>CdsAdslds '-'dsIds C ks<sup>m</sup>CdsA<sub>ks</sub><sup>m</sup>CdsAk</td><td> 6</td><td> 636</td>
<td> 785704</td><td> 2229</td><td> 2244</td><td> 11794</td><td> 11809</td><td> TATTTCTGCTC CAGGT</td><td> Tk<sub>S</sub>Ak<sub>S</sub>TdsTdsTds<sup>m</sup>CdsT dskJds '-'ds<sup>1</sup> ds '-'ds '-'ks AdsGksGdsTk</td><td> 27</td><td> 717</td>
<td> 785713</td><td> N/A</td><td> N/A</td><td> 9258</td><td> 9273</td><td> CTTCTGCAGG GAGTCA</td><td> י~/ τ י־/במ τ τ י/111 Cks 1 ks 1 ds '-'ds 1 dskJds CdsAdsGdsGdsGdsAks Gd<sub>S</sub>T<sub>ks</sub><sup>m</sup>C<sub>ds</sub>Ak</td><td> 0</td><td> 1256</td>
<td> 785740</td><td> 1768</td><td> 1783</td><td> 11333</td><td> 11348</td><td> CTGTCACATC TCCACA</td><td><sup>m</sup>CksTksGdsTds<sup>m</sup>CdsAdS CdsAdslds '-'dsIds C mp a <sup>m</sup>C A ks '-es^'ks '-'es-f'k</td><td> 23</td><td> 636</td>
<td> 785741</td><td> 1769</td><td> 1784</td><td> 11334</td><td> 11349</td><td> GCTGTCACAT CTCCAC</td><td> kJks '-'ks 1 dskJds 1 ds '-'ds A<sub>ds</sub><sup>m</sup>CdSAdSTdS<sup>m</sup>CdST<sub>ks</sub> Ves '-'ks-^-es '-'k</td><td> 5</td><td> 637</td>
<td> 785750</td><td> 2229</td><td> 2244</td><td> 11794</td><td> 11809</td><td> TATTTCTGCTC CAGGT</td><td> TksAk<sub>S</sub>Td<sub>S</sub>Td<sub>S</sub>Td<sub>S</sub><sup>m</sup>CdsT dskJds V/ds 1 ds '-'ds '-'ks AesGksGesTk</td><td> 5</td><td> 717</td>
<td> 785751</td><td> 2230</td><td> 2245</td><td> 11795</td><td> 11810</td><td> TTATTTCTGCT CCAGG</td><td> Tk<sub>s</sub>TksAdsTdsTdsTds<sup>m</sup>C τ /~י mp יך mp m ds<sup>1</sup> dskJds '-'ds<sup>1</sup> ds '-'ks CesAksGesGk</td><td> 9</td><td> 718</td>
<td> 785768</td><td> N/A</td><td> N/A</td><td> 9258</td><td> 9273</td><td> CTTCTGCAGG GAGTCA</td><td> '-'ks 1 ks 1 ds '-'ds 1 dskJds CdsAdsGdsGdsGdsAks GesTks<sup>m</sup>CesA<sub>k</sub></td><td> 0</td><td> 1256</td>
<td> 785769</td><td> N/A</td><td> N/A</td><td> 9259</td><td> 9274</td><td> CCTTCTGCAG GGAGTC</td><td> V'ks '-'ks 1 ds 1 ds '-'ds 1 d sGds CdsAdsGdsGdsGks A<sub>es</sub>GksT<sub>es</sub><sup>m</sup>Ck</td><td> 0</td><td> 1184</td>
<td> 785785</td><td> 1769</td><td> 1784</td><td> 11334</td><td> 11349</td><td> GCTGTCACAT CTCCAC</td><td> יד י~/ τ י־/1מ י~/ vJks '-'ks 1 kskJds 1 ds '-'ds A<sub>ds</sub><sup>m</sup>CdsAdsTds<sup>m</sup>CdsT<sub>ks </sub>mr mr a mr Cds '-'ks-A-ds Ck</td><td> 35</td><td> 637</td>
<td> 785791</td><td> 2230</td><td> 2245</td><td> 11795</td><td> 11810</td><td> TTATTTCTGCT CCAGG</td><td> Tk<sub>S</sub>TksAksT<sub>ds</sub>T<sub>ds</sub>T<sub>ds</sub><sup>m</sup>C m י>111 יך י~/ יך ds 1 dsvJds '-'ds 1 ds '-'ks C<sub>ds</sub>AksG<sub>ds</sub>Gk</td><td> 57</td><td> 718</td>
<td> 785801</td><td> N/A</td><td> N/A</td><td> 9259</td><td> 9274</td><td> CCTTCTGCAG GGAGTC</td><td> יך mp יך יך mr mp '-'ks '-'ks 1 ks<sup>1</sup> ds '-'ds<sup>1</sup> d sGds CdsAdsGdsGdsGks A<sub>ds</sub>GksT<sub>ds</sub><sup>m</sup>C<sub>k</sub></td><td> 0</td><td> 1184</td>
<td> 785828</td><td> 1768</td><td> 1783</td><td> 11333</td><td> 11348</td><td> CTGTCACATC TCCACA</td><td><sup>m</sup>CkSTksGkSTds<sup>m</sup>CdsA<sub>ds</sub> י־/1מ יד יד Λ י־/1מ CdsAdslds '-'dsIds C ks^esAks^esAk</td><td> 0</td><td> 636</td>
<td> 785829</td><td> 1769</td><td> 1784</td><td> 11334</td><td> 11349</td><td> GCTGTCACAT CTCCAC</td><td> יד י~/ τ י־/1מ י~/ 'Jks Cks 1 ksVJds 1 ds Cds A<sub>ds</sub><sup>m</sup>CdsAdsTds<sup>m</sup>CdsTks י>111 a י>111 י־/1מ Ves '-׳ks-cYes '-'k</td><td> 0</td><td> 637</td>
<td> 785838</td><td> 2229</td><td> 2244</td><td> 11794</td><td> 11809</td><td> TATTTCTGCTC CAGGT</td><td> TksAksTk<sub>S</sub>T<sub>ds</sub>T<sub>ds</sub><sup>m</sup>C<sub>ds</sub>T dsvJds '-'ds 1 ds '-'ds '-'ks AesGksGesTk</td><td> 24</td><td> 717</td>
<td> 785839</td><td> 2230</td><td> 2245</td><td> 11795</td><td> 11810</td><td> TTATTTCTGCT CCAGG</td><td> Tk<sub>s</sub>TksAksT<sub>ds</sub>T<sub>ds</sub>T<sub>ds</sub><sup>m</sup>C m י>111 יך י~/ יך ds 1 dsvJds '-'ds 1 ds '-'ks CesAksGesGk</td><td> 23</td><td> 718</td>
<td> 785856</td><td> N/A</td><td> N/A</td><td> 9258</td><td> 9273</td><td> CTTCTGCAGG GAGTCA</td><td> mz-A rp rp ψ /י־ '-'ks 1 ks <sup>1</sup> ks '-'ds <sup>1</sup> dskJds CdsAdsGdsGdsGdsAks GesTks<sup>m</sup>C<sub>e</sub>sA<sub>k</sub></td><td> 0</td><td> 1256</td>
<td> 785857</td><td> N/A</td><td> N/A</td><td> 9259</td><td> 9274</td><td> CCTTCTGCAG GGAGTC</td><td> יך mp יך יך mr mp '-'ks '-'ks 1 ks<sup>1</sup> ds '-'ds<sup>1</sup> d sGds CdsAdsGdsGdsGks AesGksTesTk</td><td> 0</td><td> 1184</td>
<td> 785873</td><td> 1769</td><td> 1784</td><td> 11334</td><td> 11349</td><td> GCTGTCACAT CTCCAC</td><td> י~/ומ יד י~/ τ י־/1מ י~/ 'Jks Cks 1 ksVJds 1 ds Cds A<sub>ds</sub><sup>m</sup>CdsAdsTds<sup>m</sup>CdsT<sub>ds</sub> י־/1מ a י>111 י־/1מ '-'ks '-'eszYks '-׳e</td><td> 3</td><td> 637</td>
<td> 785879</td><td> 2230</td><td> 2245</td><td> 11795</td><td> 11810</td><td> TTATTTCTGCT CCAGG</td><td> Tk<sub>S</sub>TksAksT<sub>ds</sub>T<sub>ds</sub>T<sub>ds</sub><sup>m</sup>C m י>111 יך י~/ יך ds 1 dsvJds '-'ds 1 ds '-'ds CksAesGksGe</td><td> 43</td><td> 718</td>
<td> 785889</td><td> N/A</td><td> N/A</td><td> 9259</td><td> 9274</td><td> CCTTCTGCAG GGAGTC</td><td> יד יד τ י~/111 י־/1מ '-'ks '-'ks 1 ks 1 ds '-'ds 1 d <sub>s</sub>G<sub>ds</sub><sup>m</sup>C<sub>ds</sub>A<sub>ds</sub>G<sub>ds</sub>G<sub>ds</sub>G<sub>ds</sub> A<sub>ks</sub>G<sub>e</sub>sT<sub>k</sub>s<sup>m</sup>C<sub>e</sub></td><td> 1</td><td> 1184</td>
<td> 785916</td><td> 1768</td><td> 1783</td><td> 11333</td><td> 11348</td><td> CTGTCACATC TCCACA</td><td><sup>m</sup>CksTksGksTds<sup>m</sup>CdAds י־/1מ יד יד Λ י־/1מ CdsAdslds '-'dsIds C <sub>d</sub>s<sup>m</sup>CksAks<sup>m</sup>CksA<sub>e</sub></td><td> 28</td><td> 636</td>
<td> 785917</td><td> 1769</td><td> 1784</td><td> 11334</td><td> 11349</td><td> GCTGTCACAT CTCCAC</td><td> י~/1ז1 יד 'mr τ r י~/ <Jks '-'ks A ks'Jds A ds '-'ds A<sub>ds</sub><sup>m</sup>CdAdSTds<sup>m</sup>CdsT<sub>ds</sub> י־/1מ a י>111 '-'ks '-'ksAks Ce</td><td> 23</td><td> 637</td>
<td> 785926</td><td> 2229</td><td> 2244</td><td> 11794</td><td> 11809</td><td> TATTTCTGCTC CAGGT</td><td> TksAksTk<sub>S</sub>T<sub>ds</sub>T<sub>ds</sub><sup>m</sup>CdsT /-י mr יך mr mr dskJds '-'ds<sup>1</sup> ds '-'ds '-'ds AksGksGksT <sub>e</sub></td><td> 45</td><td> 717</td>
<td> 785927</td><td> 2230</td><td> 2245</td><td> 11795</td><td> 11810</td><td> TTATTTCTGCT CCAGG</td><td> TksTksAksTdsTdsTds<sup>m</sup>C ds 1 dsvJds '-'ds 1 ds '-'ds CksAksGksGe</td><td> 28</td><td> 718</td>
<td> 785938</td><td> N/A</td><td> N/A</td><td> 6548</td><td> 6563</td><td> CCAATTTTGC ATTCCA</td><td><sup>m</sup>Cks<sup>m</sup>CkSAksAdsTdsTds TdsTdsGds<sup>m</sup>CdsA<sub>ds</sub>T<sub>ds</sub>T k<sub>s</sub><sup>m</sup>Cks<sup>m</sup>Ck<sub>s</sub>Ae</td><td> 75</td><td> 1242</td>
<td> 785944</td><td> N/A</td><td> N/A</td><td> 9258</td><td> 9273</td><td> CTTCTGCAGG GAGTCA</td><td> י~/ τ י־/במ τ τ י־/1מ '-'ks 1 ks 1 ks '-'ds 1 dsvJds <sup>m</sup>CdsAdsGdsGdsGdsAds GkSTks<sup>m</sup>CkSA<sub>e</sub></td><td> 0</td><td> 1256</td>
<td> 785945</td><td> N/A</td><td> N/A</td><td> 9259</td><td> 9274</td><td> CCTTCTGCAG GGAGTC</td><td> τ י־/במ ידי τ י־/1מ י־/1מ Cks ^ks 1 ks 1 ds '-'ds 1 d <sub>s</sub>G<sub>ds</sub><sup>m</sup>C<sub>ds</sub>A<sub>ds</sub>G<sub>ds</sub>G<sub>ds</sub>G<sub>ds </sub>A<sub>ks</sub>Gk<sub>S</sub>T<sub>ks</sub><sup>m</sup>Ce</td><td> 0</td><td> 1184</td>
<td> 786513</td><td> N/A</td><td> N/A</td><td> 9250</td><td> 9265</td><td> GGGAGTCAGA CCTACC</td><td> Gk<sub>S</sub>GksGksA<sub>ds</sub>G<sub>ds</sub>T<sub>ds</sub><sup>m </sup>CdsAdsGdsAds<sup>m</sup>Cds<sup>m</sup>Cd sTdsAks<sup>m</sup>Cks<sup>m</sup>C<sub>k</sub></td><td> 0</td><td> 1257</td>
<td> 786514</td><td> N/A</td><td> N/A</td><td> 9252</td><td> 9267</td><td> CAGGGAGTCA GACCTA</td><td> Ck<sub>S</sub>Ak<sub>S</sub>GksG<sub>ds</sub>G<sub>ds</sub>A<sub>ds </sub>G<sub>ds</sub>T<sub>ds</sub><sup>m</sup>CdsAdsGdsAds <sup>m</sup>Cds<sup>m</sup>C<sub>ks</sub>T<sub>ks</sub>A<sub>k</sub></td><td> 0</td><td> 1258</td>
<td> 786515</td><td> N/A</td><td> N/A</td><td> 9254</td><td> 9269</td><td> TGCAGGGAGT CAGACC</td><td> TksGks<sup>m</sup>CksAdsGdsGds GdsAdsGdsTds CdsAds GdsAks<sup>m</sup>Cks<sup>m</sup>Ck</td><td> 0</td><td> 1259</td>
<td> 786516</td><td> N/A</td><td> N/A</td><td> 9256</td><td> 9271</td><td> TCTGCAGGGA GTCAGA</td><td> Tks<sup>m</sup>CksTksGds<sup>m</sup>CdsAds GdsGdsGdsA<sub>ds</sub>GdsTds<sup>m </sup>CdsAksGksAk</td><td> 0</td><td> 1260</td>
<td> 786517</td><td> N/A</td><td> N/A</td><td> 9257</td><td> 9272</td><td> TTCTGCAGGG AGTCAG</td><td> י־/במ י~/ τ י־/במ יד τ 1 ks 1 ks Mes 1 dsvJds '-'ds AdsGdsGdsGdsAdsGdsT ds CksAksGk</td><td> 0</td><td> 1255</td>
<td> 786518</td><td> N/A</td><td> N/A</td><td> 9258</td><td> 9273</td><td> CTTCTGCAGG GAGTCA</td><td> mz-A rp rp rp '-'ks 1 ks 1 ks '-'ds <sup>1</sup> dskJds <sup>m</sup>CdsAdsGdsGdsGdSAds GdsTks<sup>m</sup>CksAk</td><td> 0</td><td> 1256</td>
<td> 786519</td><td> N/A</td><td> N/A</td><td> 9260</td><td> 9275</td><td> GCCTTCTGCA GGGAGT</td><td> /-י τ τ kJks '-'ks '-'ks 1 ds<sup>1</sup> ds dsTdsGds<sup>m</sup>Cd<sub>S</sub>A<sub>ds</sub>GdsGd sGdsAksGksTk</td><td> 0</td><td> 1261</td>
<td> 786520</td><td> N/A</td><td> N/A</td><td> 9261</td><td> 9276</td><td> TGCCTTCTGC AGGGAG</td><td> יד τ י־/במ י~/ T 1 ksvJks '-'ks '-'ds 1 ds 1 ds <sup>m</sup>CdsTdsGds<sup>m</sup>CdsA<sub>ds</sub>G<sub>ds </sub>GdsGksAksGk</td><td> 0</td><td> 1262</td>
<td> 786521</td><td> N/A</td><td> N/A</td><td> 9262</td><td> 9277</td><td> TTGCCTTCTGC AGGGA</td><td> τ י־/1מ י~/ יד τ 1 ks 1 ksvJks '-'ds '-'ds 1 ds Tds<sup>m</sup>CdsTdsGds<sup>m</sup>CdsAds GdsGksGksAk</td><td> 0</td><td> 1263</td>
<td> 786522</td><td> N/A</td><td> N/A</td><td> 9264</td><td> 9279</td><td> ATTTGCCTTCT GCAGG</td><td> m י־/במ י~/ יד יד יד Λ Aks 1 ks 1 ks 1 dsvJds '-'ds m י~/ τ י־/1מ יד τ י־/ '-'ds Ids Ids '-'ds 1 dsvJds CdsAksGksGk</td><td> 0</td><td> 1264</td>
<td> 786523</td><td> N/A</td><td> N/A</td><td> 9266</td><td> 9281</td><td> TCATTTGCCTT CTGCA</td><td> Tks<sup>m</sup>CksAkSTdsTdsTdsG ds '-'ds '-'ds 1 ds 1 ds '-'ds TdsGks<sup>m</sup>CksAk</td><td> 6</td><td> 1265</td>
Table 23
Inhibition of IRF5 mRNA by modified oligonucleotides targeting SEQ ID NO: 1 and 2
<td> Compound Number</td><td> SEQ ID NO: 1 Start Site</td><td> SEQ ID NO: 1 Stop Site</td><td> SEQ ID NO: 2 Start Site</td><td> SEQ ID NO: 2 Stop Site</td><td> Sequence (5' to 3')</td><td> Chemistry Notation</td><td> (% Inhibition)</td><td> SEQ ID NO</td>
<td> 728466</td><td> 427</td><td> 442</td><td> 8320</td><td> 8335</td><td> GGTGTATTT CCCTGTC</td><td> GksGksTksGdsTdsAdsTd יך τ mp mp mp יך s<sup>1</sup> ds<sup>1</sup> ds '-'ds '-'ds '-'ds<sup>1</sup> <־/τ m י~/ dsvJks 1 ks '-'k</td><td> 37</td><td> 1254</td>
<td> 728708</td><td> 1308</td><td> 1323</td><td> 10541</td><td> 10556</td><td> AGCTTGGTC TTGACCT</td><td> AksGks<sup>m</sup>CksTd<sub>S</sub>Td<sub>S</sub>Gds /~י τ m/־> τ τ vids Ids Cds 1 ds 1 ds<Jds A<sub>ds</sub><sup>m</sup>Cks<sup>m</sup>Ck<sub>S</sub>T<sub>k</sub></td><td> 37</td><td> 436</td>
<td> 728998</td><td> 2119</td><td> 2134</td><td> 11684</td><td> 11699</td><td> AGGAAGTG AGTCTCAA</td><td> AksGksGksAdsAdsGdsT dsGdsAd<sub>S</sub>GdsTd<sub>S</sub><sup>m</sup>CdsTd s CksAksAk</td><td> 42</td><td> 208</td>
<td> 729018</td><td></td><td> β</td><td> ויי</td><td> 1.1752</td><td> TCTGATATG ATACCTA</td><td></td><td> It</td><td> 111</td>
<td> 729454</td><td> N/A</td><td> N/A</td><td> 5170</td><td> 5185</td><td> AGGAGTGA GACGAGCA</td><td> AksGksGksAdsGdsTdsG d<sub>S</sub>Ad<sub>S</sub>GdsAds<sup>m</sup>CdsGdsAd sGksTksAk</td><td> 56</td><td> 995</td>
<td> 785376</td><td> 2117</td><td> 2132</td><td> 11682</td><td> 11697</td><td> GAAGTGAGT CTCAAAC</td><td> GksAdsAdsGdsTdsGdsA dsGdsTds<sup>m</sup>CdsTds<sup>m</sup>C<sub>ks</sub>A esAksAes Ck</td><td> 44</td><td> 207</td>
<td> 785377</td><td> 2119</td><td> 2134</td><td> 11684</td><td> 11699</td><td> AGGAAGTG AGTCTCAA</td><td> AksGdsGdsAdsAdsGdsT dsGd<sub>s</sub>Ad<sub>s</sub>GdsTd<sub>s</sub><sup>m</sup>CksT<sub>es </sub>“CksAesAk</td><td> 11</td><td> 208</td>
<td> 785387</td><td> N/A</td><td> N/A</td><td> 5168</td><td> 5183</td><td> GAGTGAGA CGAGCAAA</td><td> GksAdsGdsTdsGdsAdsG dsA<sub>ds</sub><sup>m</sup>CdsGdsAdsGks<sup>m </sup>CesAksAesAk</td><td> 18</td><td> 1266</td>
<td> 785388</td><td> N/A</td><td> N/A</td><td> 5170</td><td> 5185</td><td> AGGAGTGA GACGAGCA</td><td> AksGdsGdsAdsGdsTdsG dsAdsGdsAds CdsGksAe <sub>s</sub>Gks<sup>m</sup>CesA<sub>k</sub></td><td> 37</td><td> 995</td>
<td> 785431</td><td> 2117</td><td> 2132</td><td> 11682</td><td> 11697</td><td> GAAGTGAGT CTCAAAC</td><td> GksAdsAdsGdsTdsGdsA dsGdsT<sub>d</sub>s<sup>m</sup>CdsTks<sup>m</sup>CesA ksAesAks Ce</td><td> 11</td><td> 207</td>
<td> 785432</td><td> 2119</td><td> 2134</td><td> 11684</td><td> 11699</td><td> AGGAAGTG AGTCTCAA</td><td> AksGdsGdsAdsAdsGdsT dsGdsAdsGdsTks<sup>m</sup>CesTks “CesAksAe</td><td> 23</td><td> 208</td>
<td> 785442</td><td> N/A</td><td> N/A</td><td> 5168</td><td> 5183</td><td> GAGTGAGA CGAGCAAA</td><td> GksAdsGdsTdsGdsAdsG dsA<sub>d</sub>s<sup>m</sup>CdsGdsAksGes<sup>m </sup>CksAesAksAe</td><td> 6</td><td> 1266</td>
<td> 785443</td><td> N/A</td><td> N/A</td><td> 5170</td><td> 5185</td><td> AGGAGTGA GACGAGCA</td><td> AksGdsGdsAdsGdsTdsG dsAdsGdsAds CksGesAk sGes<sup>m</sup>CksA<sub>e</sub></td><td> 0</td><td> 995</td>
<td> 785474</td><td> 2119</td><td> 2134</td><td> 11684</td><td> 11699</td><td> AGGAAGTG AGTCTCAA</td><td> AksGesGksAdsAdsGdsT dsGdsAdsGdsTds<sup>m</sup>CdsTes <sup>m</sup>CesAksAk</td><td> 43</td><td> 208</td>
<td> 785480</td><td> N/A</td><td> N/A</td><td> 5170</td><td> 5185</td><td> AGGAGTGA GACGAGCA</td><td> AksGesGksAdsGdsTdsG dsAdsGdsAds CdsGdsA<sub>e </sub>sG<sub>e</sub>s<sup>m</sup>CksA<sub>k</sub></td><td> 22</td><td> 995</td>
<td> 785519</td><td> 2118</td><td> 2133</td><td> 11683</td><td> 11698</td><td> GGAAGTGA GTCTCAAA</td><td> GksGksAdsAdsGdsTdsG dsAd<sub>S</sub>GdsT<sub>ds</sub><sup>m</sup>CdsTds<sup>m</sup>C ksAesAksA<sub>e</sub></td><td> 55</td><td> 1267</td>
<td> 785520</td><td> 2119</td><td> 2134</td><td> 11684</td><td> 11699</td><td> AGGAAGTG AGTCTCAA</td><td> AksGksGdsAdsAdsGdsT dsGdsAd<sub>S</sub>GdsTd<sub>S</sub><sup>m</sup>CdsT<sub>k </sub>«”CesAksAe</td><td> 39</td><td> 208</td>
<td> 785529</td><td> N/A</td><td> N/A</td><td> 5169</td><td> 5184</td><td> GGAGTGAG ACGAGCAA</td><td> GksGksAdsGdsTdsGdsA dsGdsAds CdsGdsAdsGk «”CesAksAe</td><td> 33</td><td> 1268</td>
<td> 785530</td><td> N/A</td><td> N/A</td><td> 5170</td><td> 5185</td><td> AGGAGTGA GACGAGCA</td><td> AksGksGdsAdsGdsTdsG dsAdsGdsAds CdsGdsAk <sub>s</sub>Ge<sub>S</sub><sup>m</sup>CksAe</td><td> 28</td><td> 995</td>
<td> 785561</td><td> 2118</td><td> 2133</td><td> 11683</td><td> 11698</td><td> GGAAGTGA GTCTCAAA</td><td> GksGksAdsAdsGdsTdsG dsAdsGdsT<sub>d</sub>s<sup>m</sup>CesTes<sup>m</sup>C esAesAksAk</td><td> 34</td><td> 1267</td>
<td> 785567</td><td> N/A</td><td> N/A</td><td> 5169</td><td> 5184</td><td> GGAGTGAG ACGAGCAA</td><td> GksGksAdsGdsTdsGdsA dsGdsAds CdsGesAesGe s CesAksAk</td><td> 17</td><td> 1268</td>
<td> 785618</td><td> 2117</td><td> 2132</td><td> 11682</td><td> 11697</td><td> GAAGTGAGT CTCAAAC</td><td> GksAksAdsGdsTdsGdsA dsGdsTds^dsT^CeA A A <sup>m</sup>C ^k</td><td> 27</td><td> 207</td>
<td> 785619</td><td> 2118</td><td> 2133</td><td> 11683</td><td> 11698</td><td> GGAAGTGA GTCTCAAA</td><td> GksGksAdsAdsGdsTdsG dsAdsGdsT<sub>d</sub>s<sup>m</sup>CksTes<sup>m</sup>C ksAesAksAk</td><td> 36</td><td> 1267</td>
<td> 785620</td><td> 2119</td><td> 2134</td><td> 11684</td><td> 11699</td><td> AGGAAGTG AGTCTCAA</td><td> AksGksGdsAdsAdsGdsT dsGdsAdsGdsTks<sup>m</sup>CesTks “CesAksAk</td><td> 20</td><td> 208</td>
<td> 785632</td><td> N/A</td><td> N/A</td><td> 5168</td><td> 5183</td><td> GAGTGAGA CGAGCAAA</td><td> GksAksGdsTdsGdsAdsG dsA<sub>d</sub>s<sup>m</sup>CdsGdsAksGes<sup>m </sup>CksAesAksAk</td><td> 17</td><td> 1266</td>
<td> 785633</td><td> N/A</td><td> N/A</td><td> 5169</td><td> 5184</td><td> GGAGTGAG ACGAGCAA</td><td> GksGksAdsGdsTdsGdsA dsGdsAds CdsGksAesGk <sup>m</sup>C A, A, s ^es^ks^k</td><td> 38</td><td> 1268</td>
<td> 785634</td><td> N/A</td><td> N/A</td><td> 5170</td><td> 5185</td><td> AGGAGTGA GACGAGCA</td><td> AksGksGdsAdsGdsTdsG dsAdsGdsAds CksGesAk <sub>s</sub>Ges<sup>m</sup>CksA<sub>k</sub></td><td> 35</td><td> 995</td>
<td> 785670</td><td> 2118</td><td> 2133</td><td> 11683</td><td> 11698</td><td> GGAAGTGA GTCTCAAA</td><td> GksGksAdsAdsGdsTdsG dsAdsGdsT<sub>d</sub>s<sup>m</sup>CdsTes<sup>m</sup>C esAesAksAk</td><td> 32</td><td> 1267</td>
<td> 785676</td><td> N/A</td><td> N/A</td><td> 5169</td><td> 5184</td><td> GGAGTGAG ACGAGCAA</td><td> GksGksAdsGdsTdsGdsA dsGdsAds CdsGdsAesGe s<sup>m</sup>CesAksA<sub>k</sub></td><td> 25</td><td> 1268</td>
<td> 785700</td><td> 2118</td><td> 2133</td><td> 11683</td><td> 11698</td><td> GGAAGTGA GTCTCAAA</td><td> GksGksAdsAdsGdsTdsG dsAdsGdsT<sub>d</sub>s<sup>m</sup>CdsTks<sup>m</sup>C dsAksAdsAk</td><td> 12</td><td> 1267</td>
<td> 785706</td><td> N/A</td><td> N/A</td><td> 5169</td><td> 5184</td><td> GGAGTGAG ACGAGCAA</td><td> GksGksAdsGdsTdsGdsA dsGdsAds CdsGdsAksGd s<sup>m</sup>CksAdsA<sub>k</sub></td><td> 16</td><td> 1268</td>
<td> 785744</td><td> 2118</td><td> 2133</td><td> 11683</td><td> 11698</td><td> GGAAGTGA GTCTCAAA</td><td> GksGksAdsAdsGdsTdsG <<sub>te</sub>AdsGdsTds<sup>m</sup>C<sub>ds</sub>T<sub>ks</sub><sup>m</sup>C esAksAesAk</td><td> 25</td><td> 1267</td>
<td> 785745</td><td> 2119</td><td> 2134</td><td> 11684</td><td> 11699</td><td> AGGAAGTG AGTCTCAA</td><td> AksGksGdsAdsAdsGdsT dsGdsAd<sub>S</sub>GdsTd<sub>S</sub><sup>m</sup>CksTes <sup>m</sup>CksAesA<sub>k</sub></td><td> 42</td><td> 208</td>
<td> 785754</td><td> N/A</td><td> N/A</td><td> 5169</td><td> 5184</td><td> GGAGTGAG ACGAGCAA</td><td> GksGksAdsGdsTdsGdsA dsGdsAds CdsGdsAksGe <sub>s</sub><sup>m</sup>C<sub>ks</sub>A<sub>es</sub>Ak</td><td> 27</td><td> 1268</td>
<td> 785755</td><td> N/A</td><td> N/A</td><td> 5170</td><td> 5185</td><td> AGGAGTGA GACGAGCA</td><td> AksGksGdsAdsGdsTdsG dsAdsGdsAds CdsGksAe sGksTesAk</td><td> 36</td><td> 995</td>
<td> 785787</td><td> 2119</td><td> 2134</td><td> 11684</td><td> 11699</td><td> AGGAAGTG AGTCTCAA</td><td> AksGksGksAdsAdsGdsT dsGdsAd<sub>S</sub>GdsTd<sub>S</sub><sup>m</sup>CksTd s<sup>m</sup>CksAdsAk</td><td> 40</td><td> 208</td>
<td> 785793</td><td> N/A</td><td> N/A</td><td> 5170</td><td> 5185</td><td> AGGAGTGA GACGAGCA</td><td> AksGksGksAdsGdsTdsG dsAdsGdsAds CdsGksAd sGksTdsAk</td><td> 37</td><td> 995</td>
<td> 785832</td><td> 2118</td><td> 2133</td><td> 11683</td><td> 11698</td><td> GGAAGTGA GTCTCAAA</td><td> GksGksAksAdsGdsTdsG dsAdsGdsTds<sup>m</sup>CdSTks<sup>m</sup>C esAksAesAk</td><td> 45</td><td> 1267</td>
<td> 785833</td><td> 2119</td><td> 2134</td><td> 11684</td><td> 11699</td><td> AGGAAGTG AGTCTCAA</td><td> AksGksGksAdsAdsGdsT dsGdsAdsGdsTds<sup>m</sup>CksT<sub>es </sub>mp, A A, Cks-^*-es-^*-k</td><td> 24</td><td> 208</td>
<td> 785842</td><td> N/A</td><td> N/A</td><td> 5169</td><td> 5184</td><td> GGAGTGAG ACGAGCAA</td><td> GksGksAksGdsTdsGdsA dsGdsAds CdsGdsAksGe s<sup>m</sup>CksAesA<sub>k</sub></td><td> 5</td><td> 1268</td>
<td> 785843</td><td> N/A</td><td> N/A</td><td> 5170</td><td> 5185</td><td> AGGAGTGA GACGAGCA</td><td> AksGksGksAdsGdsTdsG dsAdsGdsAds CdsGksAe sGks<sup>m</sup>CesA<sub>k</sub></td><td> 24</td><td> 995</td>
<td> 785875</td><td> 2119</td><td> 2134</td><td> 11684</td><td> 11699</td><td> AGGAAGTG AGTCTCAA</td><td> AksGksGksAdsAdsGdsT dsGdsAdsGdsT<sub>d</sub>s<sup>m</sup>CdsTk s<sup>m</sup>CesAksA<sub>e</sub></td><td> 21</td><td> 208</td>
<td> 785881</td><td> N/A</td><td> N/A</td><td> 5170</td><td> 5185</td><td> AGGAGTGA GACGAGCA</td><td> AksGksGksAdsGdsTdsG dsAdsGdsAds CdsGdsAk <sub>s</sub>Ges<sup>m</sup>CksA<sub>e</sub></td><td> 42</td><td> 995</td>
<td> 785920</td><td> 2118</td><td> 2133</td><td> 11683</td><td> 11698</td><td> GGAAGTGA GTCTCAAA</td><td> GksGksAksAdsGdsTdsG dsAdsGdsT<sub>d</sub>s<sup>m</sup>CdsTds<sup>m</sup>C ksAksAksAe</td><td> 49</td><td> 1267</td>
<td> 785921</td><td> 2119</td><td> 2134</td><td> 11684</td><td> 11699</td><td> AGGAAGTG AGTCTCAA</td><td> AksGksGksAdsAdsGdsT dsGdsAdsGdsTds<sup>m</sup>CdsTk s<sup>m</sup>CksAksA<sub>e</sub></td><td> 47</td><td> 208</td>
<td> 785930</td><td> N/A</td><td> N/A</td><td> 5169</td><td> 5184</td><td> GGAGTGAG ACGAGCAA</td><td> GksGksAksGdsTdsGdsA dsGdsAds CdsGdsAdsGk s<sup>m</sup>CksAksA<sub>e</sub></td><td> 33</td><td> 1268</td>
<td> 785931</td><td> N/A</td><td> N/A</td><td> 5170</td><td> 5185</td><td> AGGAGTGA GACGAGCA</td><td> AksGksGksAdsGdsTdsG dsAdsGdsAds CdsGdsAk sGks<sup>m</sup>CksA<sub>e</sub></td><td> 37</td><td> 995</td>
<td> 785938</td><td> N/A</td><td> N/A</td><td> 6548</td><td> 6563</td><td> CCAATTTTG CATTCCA</td><td><sup>m</sup>Cks<sup>m</sup>CksAksAdsTdsTds TdsTdsGds<sup>m</sup>CdsAdsTdsT ks<sup>m</sup>Cks<sup>m</sup>CksAe</td><td> 10</td><td> 1242</td>
<td> 786501</td><td> 2118</td><td> 2133</td><td> 11683</td><td> 11698</td><td> GGAAGTGA GTCTCAAA</td><td> GksGksAksAdsGdsTdsG d<sub>S</sub>A<sub>ds</sub>Gd<sub>S</sub>Td<sub>S</sub><sup>m</sup>Cd<sub>S</sub>T<sub>ds</sub><sup>m</sup>C dsAksAksAk</td><td> 51</td><td> 1267</td>
<td> 786502</td><td> 2120</td><td> 2135</td><td> 11685</td><td> 11700</td><td> GAGGAAGT GAGTCTCA</td><td> GksAksGksGdsAdsAdsG d<sub>S</sub>Td<sub>S</sub>GdsAd<sub>S</sub>GdsTds<sup>m</sup>Cd sTks<sup>m</sup>CksA<sub>k</sub></td><td> 0</td><td> 1269</td>
<td> 786503</td><td> 2171</td><td> 2186</td><td> 11736</td><td> 11751</td><td> CTGATATGA TACCTAA</td><td><sup>111</sup>CksTksGksAdsTdsAds TdsGdsAd<sub>S</sub>T<sub>ds</sub>Ad<sub>S</sub><sup>m</sup>Cds<sup>m </sup>CdsTksAksAk</td><td> 59</td><td> 1270</td>
<td> 786504</td><td> 2173</td><td> 2188</td><td> 11738</td><td> 11753</td><td> ATCTGATAT GATACCT</td><td> AksTks<sup>m</sup>CksTd<sub>S</sub>GdsAd<sub>S </sub>TdsAdsTdsGdsAdsTdsAd mp mp יך s '-'ks '-'ks 1 k</td><td> 36</td><td> 1271</td>
<td> 786524</td><td> N/A</td><td> N/A</td><td> 5141</td><td> 5156</td><td> ACGAGTTAT GGGAAGG</td><td> Ak<sub>s</sub> CksGksAdsGdsTds TdsAdsTdsGdsGdsGdsA dsAksGksGk</td><td> 74</td><td> 1272</td>
<td> 786525</td><td> N/A</td><td> N/A</td><td> 5143</td><td> 5158</td><td> GGACGAGTT ATGGGAA</td><td> GksGksAks CdsGdsAds GdsTd<sub>S</sub>Td<sub>S</sub>Ad<sub>S</sub>Td<sub>S</sub>GdsGd sGksAksAk</td><td> 37</td><td> 1273</td>
<td> 786526</td><td> N/A</td><td> N/A</td><td> 5145</td><td> 5160</td><td> TAGGACGA GTTATGGG</td><td> Tk<sub>S</sub>Ak<sub>S</sub>GksGdsAd<sub>S</sub><sup>m</sup>Cds GdsAd<sub>S</sub>GdsTd<sub>S</sub>Td<sub>S</sub>Ad<sub>S</sub>Td sGksGksGk</td><td> 25</td><td> 1274</td>
<td> 786527</td><td> N/A</td><td> N/A</td><td> 5147</td><td> 5162</td><td> AGTAGGAC GAGTTATG</td><td> AksGksTksAdsGdsGdsA ds<sup>m</sup>CdsGdsAd<sub>S</sub>Gd<sub>S</sub>Td<sub>S</sub>Td sAk<sub>S</sub>Tk<sub>S</sub>Gk</td><td> 0</td><td> 1275</td>
<td> 786528</td><td> N/A</td><td> N/A</td><td> 5149</td><td> 5164</td><td> TGAGTAGGA CGAGTTA</td><td> TksGksAksGdsTdsAdsG dsGdsAd<sub>S</sub><sup>m</sup>CdsGdsAd<sub>S</sub>Gd sTksTksAk</td><td> 18</td><td> 1276</td>
<td> 786529</td><td> N/A</td><td> N/A</td><td> 5151</td><td> 5166</td><td> GGTGAGTAG GACGAGT</td><td> GksGksTksGdsAdsGdsT d<sub>S</sub>Ad<sub>S</sub>GdsGdsAds<sup>m</sup>CdsGd sAksGksTk</td><td> 48</td><td> 1277</td>
<td> 786530</td><td> N/A</td><td> N/A</td><td> 5153</td><td> 5168</td><td> AGGGTGAGT AGGACGA</td><td> AksGksGksGdsTdsGdsA dsGdsTdsAdsGdsGdsAds “CksGksAk</td><td> 19</td><td> 1278</td>
<td> 786531</td><td> N/A</td><td> N/A</td><td> 5155</td><td> 5170</td><td> AAAGGGTG AGTAGGAC</td><td> AksAksAksGdsGdsGdsT dsGdsAdsGdsTdsAdsGds Gk<sub>S</sub>Ak<sub>S</sub><sup>m</sup>C<sub>k</sub></td><td> 24</td><td> 1279</td>
<td> 786532</td><td> N/A</td><td> N/A</td><td> 5157</td><td> 5172</td><td> GCAAAGGG TGAGTAGG</td><td> Gks CksAksAdsAdsGds GdsGdsTdsGdsAdsGdsT dsAksGksGk</td><td> 24</td><td> 1280</td>
<td> 786533</td><td> N/A</td><td> N/A</td><td> 5159</td><td> 5174</td><td> GAGCAAAG GGTGAGTA</td><td> GksAksGks CdsAdsAds AdsGdsGdsGdsTdsGdsA dsGksTksAk</td><td> 0</td><td> 1281</td>
<td> 786534</td><td> N/A</td><td> N/A</td><td> 5161</td><td> 5176</td><td> ACGAGCAA AGGGTGAG</td><td> A<sub>ks</sub><sup>m</sup>CkSGkSAdsGdS<sup>m</sup>Cd sAdsAdsAdsGdsGdsGds T dsGksAksGk</td><td> 47</td><td> 1282</td>
<td> 786535</td><td> N/A</td><td> N/A</td><td> 5163</td><td> 5178</td><td> AGACGAGC AAAGGGTG</td><td> AksGksAks CdsGdsAds Gds CdsAdsAdsAdsGds GdsGksTksGk</td><td> 35</td><td> 1283</td>
<td> 786536</td><td> N/A</td><td> N/A</td><td> 5164</td><td> 5179</td><td> GAGACGAG CAAAGGGT</td><td> GksAksGksAds CdsGds AdsGds<sup>m</sup>CdsAdsAdsAds GdsGksGksTk</td><td> 40</td><td> 1284</td>
<td> 786537</td><td> N/A</td><td> N/A</td><td> 5165</td><td> 5180</td><td> TGAGACGA GCAAAGGG</td><td> Tk<sub>s</sub>GksAksGdsAds<sup>m</sup>Cds GdsA<sub>ds</sub>Gds CdsAdsAds AdsGksGksGk</td><td> 22</td><td> 1285</td>
<td> 786538</td><td> N/A</td><td> N/A</td><td> 5166</td><td> 5181</td><td> GTGAGACG AGCAAAGG</td><td> GksTksGksAdsGdsAds CdsGdsAd<sub>S</sub>Gds<sup>m</sup>CdsAd<sub>S </sub>AdsAksGksGk</td><td> 49</td><td> 1286</td>
<td> 786539</td><td> N/A</td><td> N/A</td><td> 5167</td><td> 5182</td><td> AGTGAGAC GAGCAAAG</td><td> AksGksTksGdsAdsGdsA <sub>ds</sub><sup>m</sup>CdSGdSAdsGdS<sup>m</sup>CdS AdsAksAksGk</td><td> 16</td><td> 1287</td>
<td> 786540</td><td> N/A</td><td> N/A</td><td> 5168</td><td> 5183</td><td> GAGTGAGA CGAGCAAA</td><td> GksAksGksTdsGdsAdsG dsA<sub>ds</sub><sup>m</sup>CdsGdsAdsGds<sup>m </sup>CdsAksAksAk</td><td> 27</td><td> 1266</td>
<td> 786541</td><td> N/A</td><td> N/A</td><td> 5169</td><td> 5184</td><td> GGAGTGAG ACGAGCAA</td><td> GksGksAksGdsTdsGdsA dsGdsAd<sub>S</sub><sup>m</sup>CdsGdsAd<sub>S</sub>Gd <sub>s</sub><sup>m</sup>CksAksAk</td><td> 37</td><td> 1268</td>
<td> 786542</td><td> N/A</td><td> N/A</td><td> 5171</td><td> 5186</td><td> TAGGAGTGA GACGAGC</td><td> TksAksGksGdsAdsGdsT dsGdsAdsGdsAds CdsGd sAksGksTk</td><td> 1</td><td> 1288</td>
<td> 786543</td><td> N/A</td><td> N/A</td><td> 5172</td><td> 5187</td><td> ATAGGAGTG AGACGAG</td><td> AksTksAksGdsGdsAdsG dsTdsGdsAdsGdsAds<sup>m</sup>Cd sGksAksGk</td><td> 16</td><td> 1289</td>
<td> 786544</td><td> N/A</td><td> N/A</td><td> 5173</td><td> 5188</td><td> AATAGGAGT GAGACGA</td><td> AksAksTksAdsGdsGdsA dsGdsTdsGdsAdsGdsAds <sup>1</sup>CksGksAk</td><td> 25</td><td> 1290</td>
<td> 786545</td><td> N/A</td><td> N/A</td><td> 5174</td><td> 5189</td><td> TAATAGGAG TGAGACG</td><td> TksAksAksTdsAdsGdsG dsAdsGdsTdsGdsAdsGds Aks<sup>m</sup>CksGk</td><td> 12</td><td> 1291</td>
<td> 786546</td><td> N/A</td><td> N/A</td><td> 5175</td><td> 5190</td><td> GTAATAGGA GTGAGAC</td><td> Gk<sub>S</sub>Tk<sub>S</sub> Aks Ad<sub>S</sub>T ds A<sub>ds</sub>G dsGdsAdsGdsTdsGdsAds GksAks<sup>m</sup>C<sub>k</sub></td><td> 11</td><td> 1292</td>
<td> 786547</td><td> N/A</td><td> N/A</td><td> 5177</td><td> 5192</td><td> GAGTAATAG GAGTGAG</td><td> Gks AksGksT dsAds AdsT dsAdsGdsGdsAdsGdsTds GksAksGk</td><td> 33</td><td> 1293</td>
<td> 786548</td><td> N/A</td><td> N/A</td><td> 5179</td><td> 5194</td><td> ATGAGTAAT AGGAGTG</td><td> AksTksGksAdsGdsTdsA dsAdsTdsAdsGdsGdsAds GksTksGk</td><td> 56</td><td> 1294</td>
<td> 786549</td><td> N/A</td><td> N/A</td><td> 5181</td><td> 5196</td><td> TCATGAGTA ATAGGAG</td><td> Tks<sup>m</sup>CksAk<sub>S</sub>Td<sub>S</sub>GdsAd<sub>S </sub>GdsTdsAdsAdsTdsAdsG dsGksAksGk</td><td> 11</td><td> 1295</td>
<td> 786550</td><td> N/A</td><td> N/A</td><td> 5183</td><td> 5198</td><td> CCTCATGAG TAATAGG</td><td> me me יד me λ t Cks Cks 1 ks CdsAtfs 1 dsGdsAdsGdsTdsAdsAds T dsAksGksGk</td><td> 0</td><td> 1296</td>
Table 24
Inhibition of IRF5 mRNA by modified oligonucleotides targeting SEQ ID NO: 1 and 2
<td> Compound Number</td><td> SEQ ID NO: 1 Start Site</td><td> SEQ ID NO: 1 Stop Site</td><td> SEQ ID NO: 2 Start Site</td><td> SEQ ID NO: 2 Stop Site</td><td> Sequence (5' to 3')</td><td> Chemistry Notation</td><td> % Inhibition</td><td> SEQ ID NO</td>
<td> 665892</td><td> 1227</td><td> 1242</td><td> 10460</td><td> 10475</td><td> CACTGACAC AGGCGGA</td><td><sup>m</sup>CksAks<sup>m</sup>CksTdsGdsAds <sup>m</sup>CdsAds<sup>m</sup>CdsA<sub>ds</sub>G<sub>ds</sub>G<sub>d s</sub><sup>m</sup>C<sub>ds</sub>GksGksA<sub>k</sub></td><td> 0</td><td> 387</td>
<td> 665893</td><td> 1228</td><td> 1243</td><td> 10461</td><td> 10476</td><td> GCACTGACA CAGGCGG</td><td> Gks<sup>m</sup>CkSAks<sup>m</sup>CdsT<sub>ds</sub>G<sub>ds </sub>A<sub>ds</sub><sup>m</sup>CdsAds<sup>m</sup>CdsA<sub>ds</sub>G<sub>d s</sub>G<sub>ds</sub><sup>m</sup>CksGksGk</td><td> 0</td><td> 39</td>
<td> 728466</td><td> 427</td><td> 442</td><td> 8320</td><td> 8335</td><td> GGTGTATTTC CCTGTC</td><td> GksGk<sub>S</sub>Tk<sub>S</sub>G<sub>ds</sub>T<sub>ds</sub>A<sub>d</sub>sT<sub>d</sub> יך me me me יך יך<sup>1</sup> s 1 ds 1 ds '-'ds '-'ds '-'ds 1 p יד mp dsMcs A ks Ck</td><td> 27</td><td> 1254</td>
<td> 728489</td><td> 484</td><td> 499</td><td> 8377</td><td> 8392</td><td> AAGGGCACA GCGCAGG</td><td> AksAksGksG<sub>d</sub>sG<sub>d</sub>s C<sub>ds </sub>A<sub>ds</sub><sup>m</sup>CdsAdsGds<sup>m</sup>CdsG<sub>d s</sub><sup>m</sup>C<sub>ds</sub>AksGksGk</td><td> 42</td><td> 1249</td>
<td> 728670</td><td> 1230</td><td> 1245</td><td> 10463</td><td> 10478</td><td> TTGCACTGA CACAGGC</td><td> Tk<sub>S</sub>T<sub>ks</sub>G<sub>ks</sub><sup>m</sup>CdsAds<sup>m</sup>Cds T<sub>ds</sub>G<sub>ds</sub>A<sub>ds</sub><sup>m</sup>CdsAds<sup>m</sup>Cds AdsGksGksTk</td><td> 21</td><td> 398</td>
<td> 728707</td><td> 1307</td><td> 1322</td><td> 10540</td><td> 10555</td><td> GCTTGGTCTT GACCTC</td><td> Gks<sup>m</sup>CksTksT<sub>ds</sub>G<sub>ds</sub>G<sub>ds</sub> p a m יד יד mp יד 1 ds '-'ds A ds A dsMis-Ads p mp יד mp Cds Cks 1 ks M</td><td> 52</td><td> 435</td>
<td> 728708</td><td> 1308</td><td> 1323</td><td> 10541</td><td> 10556</td><td> AGCTTGGTC TTGACCT</td><td> Ak<sub>S</sub>Gks<sup>m</sup>Ck<sub>S</sub>T<sub>ds</sub>T<sub>ds</sub>G<sub>ds</sub> P יד יד mp יד p Cds 1 ds '-'ds A ds A dsCds A<sub>ds</sub><sup>m</sup>Cks<sup>m</sup>CksT<sub>k</sub></td><td> 40</td><td> 436</td>
<td> 728958</td><td> 1979</td><td> 1994</td><td> 11544</td><td> 11559</td><td> CCTATACAG CTAGGCC</td><td><sup>m</sup>Cks<sup>m</sup>CksTksA<sub>d</sub>sT<sub>ds</sub>A<sub>ds </sub><sup>m</sup>CdsAdsGds<sup>m</sup>CdsT<sub>ds</sub>A<sub>ds </sub>p p mp mp MsMs Cks M</td><td> 0</td><td> 168</td>
<td> 729037</td><td> 2216</td><td> 2231</td><td> 11781</td><td> 11796</td><td> GGTTCTTGG ACTCTCA</td><td> יד יד mp יד יד p p 'Jks'Jks 1 ks 1 ds Ms 1 ds 1 <sub>ds</sub>G<sub>ds</sub>G<sub>ds</sub>A<sub>ds</sub><sup>m</sup>CdsTds<sup>m</sup>C dsTks<sup>m</sup>CksAk</td><td> 68</td><td> 706</td>
<td> 729494</td><td> N/A</td><td> N/A</td><td> 6958</td><td> 6973</td><td> GAATTTTGT GACTGTA</td><td> GksAksAksT<sub>ds</sub>T<sub>ds</sub>T<sub>ds</sub>T<sub>d </sub>sG<sub>ds</sub>T<sub>ds</sub>G<sub>ds</sub>A<sub>ds</sub><sup>m</sup>C<sub>ds</sub>T<sub>ds </sub>GksTksAk</td><td> 57</td><td> 1065</td>
<td> 729495</td><td> N/A</td><td> N/A</td><td> 6981</td><td> 6996</td><td> ACCATTCTAT GCCTTT</td><td> A<sub>ks</sub><sup>m</sup>Cks<sup>m</sup>CksAdsTdsTds <sup>m</sup>CdsT<sub>ds</sub>A<sub>ds</sub>T<sub>ds</sub>G<sub>ds</sub><sup>m</sup>C<sub>ds</sub> יד יד יד mp Cds 1 ks 1 ks 1 k</td><td> 70</td><td> 1066</td>
<td> 785352</td><td> 1225</td><td> 1240</td><td> 10458</td><td> 10473</td><td> CTGACACAG GCGGATG</td><td><sup>m</sup>CksTdsGdsAds<sup>m</sup>CdsA<sub>ds </sub><sup>m</sup>CdsAdsGdsGds<sup>m</sup>CdsG<sub>k </sub>sGesAksTesGk</td><td> 0</td><td> 1297</td>
<td> 785353</td><td> 1227</td><td> 1242</td><td> 10460</td><td> 10475</td><td> CACTGACAC AGGCGGA</td><td><sup>m</sup>CksAds<sup>m</sup>CdsT<sub>ds</sub>G<sub>ds</sub>A<sub>d</sub>s <sup>m</sup>CdsAds<sup>m</sup>CdsA<sub>ds</sub>G<sub>ds</sub>G<sub>k s</sub><sup>m</sup>CesGksGesA<sub>k</sub></td><td> 0</td><td> 387</td>
<td> 785396</td><td> N/A</td><td> N/A</td><td> 6979</td><td> 6994</td><td> CATTCTATGC CTTTTA</td><td> יד mp יד יד mp a CksAds 1 ds 1 ds Cds 1 ds A<sub>ds</sub>T<sub>ds</sub>G<sub>ds</sub><sup>m</sup>Cds<sup>m</sup>CdsTks TesTksTesAk</td><td> 37</td><td> 1298</td>
<td> 785397</td><td> N/A</td><td> N/A</td><td> 6981</td><td> 6996</td><td> ACCATTCTAT GCCTTT</td><td> A<sub>ks</sub><sup>m</sup>Cds<sup>m</sup>CdsA<sub>ds</sub>T<sub>ds</sub>T<sub>ds </sub><sup>m</sup>CdsTdsAdsTdsGds<sup>m</sup>Cks T T T י־/1מ Ves 1 ks 1 es 1 k</td><td> 0</td><td> 1066</td>
<td> 785407</td><td> 1225</td><td> 1240</td><td> 10458</td><td> 10473</td><td> CTGACACAG GCGGATG</td><td> ”CksTdsGdsAdsTdsAds “CdsAdsGdsGds^ksGe <sub>s</sub>GksAesT<sub>ks</sub>Ge</td><td> 0</td><td> 1297</td>
<td> 785408</td><td> 1227</td><td> 1242</td><td> 10460</td><td> 10475</td><td> CACTGACAC AGGCGGA</td><td><sup>m</sup>CksAds<sup>m</sup>CdsT<sub>ds</sub>G<sub>ds</sub>A<sub>ds </sub><sup>m</sup>CdsAds<sup>m</sup>CdsA<sub>ds</sub>G<sub>ks</sub>G<sub>e s</sub><sup>m</sup>C<sub>ks</sub>GesG<sub>ks</sub>A<sub>e</sub></td><td> 0</td><td> 387</td>
<td> 785451</td><td> N/A</td><td> N/A</td><td> 6979</td><td> 6994</td><td> CATTCTATGC CTTTTA</td><td> mp ATT T '-׳ks^ds 1 ds<sup>1</sup> ds '-'ds<sup>1</sup> ds AdsTdsGds<sup>m</sup>Cds<sup>m</sup>C<sub>ks</sub>T<sub>es </sub>T<sub>ks</sub>TesT<sub>ks</sub>A<sub>e</sub></td><td> 13</td><td> 1298</td>
<td> 785452</td><td> N/A</td><td> N/A</td><td> 6981</td><td> 6996</td><td> ACCATTCTAT GCCTTT</td><td> A<sub>ks</sub><sup>m</sup>Cds<sup>m</sup>CdsA<sub>ds</sub>T<sub>ds</sub>T<sub>ds </sub><sup>m</sup>CdsTdsAdsTdsGks<sup>m</sup>Ces T T T י־/1מ '-ks 1 es 1 ks 1 e</td><td> 10</td><td> 1066</td>
<td> 785461</td><td> 1227</td><td> 1242</td><td> 10460</td><td> 10475</td><td> CACTGACAC AGGCGGA</td><td><sup>m</sup>CksAes<sup>m</sup>CksT<sub>d</sub>sG<sub>d</sub>sA<sub>ds </sub><sup>m</sup>CdsAds<sup>m</sup>CdsA<sub>ds</sub>G<sub>ds</sub>G<sub>d s</sub><sup>m</sup>Ce<sub>S</sub>GesG<sub>ks</sub>Ak</td><td> 0</td><td> 387</td>
<td> 785486</td><td> N/A</td><td> N/A</td><td> 6981</td><td> 6996</td><td> ACCATTCTAT GCCTTT</td><td> A<sub>ks</sub><sup>m</sup>CeS<sup>m</sup>CksA<sub>ds</sub>T<sub>ds</sub>T<sub>ds </sub><sup>m</sup>CdsTdsAdsTdsGds<sup>m</sup>Cds T T T '-'es 1 es<sup>1</sup> ks<sup>1</sup> k</td><td> 51</td><td> 1066</td>
<td> 785496</td><td> 1226</td><td> 1241</td><td> 10459</td><td> 10474</td><td> ACTGACACA GGCGGAT</td><td> A<sub>ks</sub><sup>m</sup>CksTdsGdsAds<sup>m</sup>Cds A<sub>ds</sub><sup>m</sup>CdsAdsGdsGds<sup>m</sup>Cd sGksGesA<sub>ks</sub>Te</td><td> 0</td><td> 397</td>
<td> 785497</td><td> 1227</td><td> 1242</td><td> 10460</td><td> 10475</td><td> CACTGACAC AGGCGGA</td><td><sup>m</sup>CkSAkS<sup>m</sup>CdsT<sub>ds</sub>G<sub>ds</sub>A<sub>ds </sub><sup>m</sup>CdsAds<sup>m</sup>CdsA<sub>ds</sub>G<sub>ds</sub>G<sub>d s</sub><sup>m</sup>Ck<sub>s</sub>GesGk<sub>s</sub>A<sub>e</sub></td><td> 0</td><td> 387</td>
<td> 785539</td><td> N/A</td><td> N/A</td><td> 6980</td><td> 6995</td><td> CCATTCTATG CCTTTT</td><td> '-'ks '-'ks-^-ds A ds A ds <sub>ds</sub>T<sub>ds</sub>A<sub>ds</sub>T<sub>ds</sub>G<sub>ds</sub><sup>m</sup>Cds<sup>m</sup>C dsTksTesTksT<sub>e</sub></td><td> 61</td><td> 1299</td>
<td> 785540</td><td> N/A</td><td> N/A</td><td> 6981</td><td> 6996</td><td> ACCATTCTAT GCCTTT</td><td> A<sub>ks</sub><sup>m</sup>Cks<sup>m</sup>CdsAdsTdsTds <sup>m</sup>CdsT<sub>ds</sub>A<sub>ds</sub>T<sub>ds</sub>G<sub>ds</sub><sup>m</sup>C<sub>ds</sub> T T T י־/1מ '-ks 1 es 1 ks 1 e</td><td> 51</td><td> 1066</td>
<td> 785548</td><td> 1226</td><td> 1241</td><td> 10459</td><td> 10474</td><td> ACTGACACA GGCGGAT</td><td> A<sub>ks</sub><sup>m</sup>CksTdsGdsAds<sup>m</sup>Cds A<sub>ds</sub><sup>m</sup>CdsAdsGdsGes<sup>m</sup>Ce sGesGeSA<sub>ks</sub>T|<sub>K</sub></td><td> 0</td><td> 397</td>
<td> 785572</td><td> N/A</td><td> N/A</td><td> 6980</td><td> 6995</td><td> CCATTCTATG CCTTTT</td><td> ^ks V'ksAds 1 ds 1 ds <sub>ds</sub>T<sub>ds</sub>A<sub>ds</sub>T<sub>ds</sub>G<sub>ds</sub><sup>m</sup>Ces<sup>m</sup>C esTesTesTksTk</td><td> 17</td><td> 1299</td>
<td> 785585</td><td> 1225</td><td> 1240</td><td> 10458</td><td> 10473</td><td> CTGACACAG GCGGATG</td><td> “CksTksGdsAdsTdsAds <sup>m</sup>C<sub>ds</sub>A<sub>ds</sub>G<sub>ds</sub>G<sub>ds</sub><sup>m</sup>CksGe sGksAesTksGk</td><td> 0</td><td> 1297</td>
<td> 785586</td><td> 1226</td><td> 1241</td><td> 10459</td><td> 10474</td><td> ACTGACACA GGCGGAT</td><td> A<sub>ks</sub><sup>m</sup>CkSTdsGdsAds<sup>m</sup>Cds A<sub>ds</sub><sup>m</sup>C<sub>ds</sub>A<sub>ds</sub>G<sub>ds</sub>G<sub>ks</sub><sup>m</sup>Ce sGksGesAksTk</td><td> 0</td><td> 397</td>
<td> 785587</td><td> 1227</td><td> 1242</td><td> 10460</td><td> 10475</td><td> CACTGACAC AGGCGGA</td><td><sup>m</sup>CksAks<sup>m</sup>C<sub>ds</sub>T<sub>ds</sub>G<sub>ds</sub>A<sub>ds </sub><sup>m</sup>CdsAds<sup>m</sup>CdsA<sub>ds</sub>G<sub>ks</sub>G<sub>e </sub>«“CksGesGksAk</td><td> 0</td><td> 387</td>
<td> 785645</td><td> N/A</td><td> N/A</td><td> 6979</td><td> 6994</td><td> CATTCTATGC CTTTTA</td><td> CksA<sub>ks</sub> 1 ds 1 ds '-'ds 1 ds A<sub>ds</sub>T<sub>ds</sub>G<sub>ds</sub><sup>m</sup>Cds<sup>m</sup>CksT<sub>es </sub>TksT<sub>es</sub>TksAk</td><td> 56</td><td> 1298</td>
<td> 785646</td><td> N/A</td><td> N/A</td><td> 6980</td><td> 6995</td><td> CCATTCTATG CCTTTT</td><td> mr mr ATT '-'ks '-'ksAtfs 1 ds 1 ds *-׳ dsT<sub>ds</sub>A<sub>ds</sub>T<sub>ds</sub>G<sub>ds</sub><sup>m</sup>C<sub>ks</sub><sup>m</sup>C esTksTesTksTk</td><td> 3</td><td> 1299</td>
<td> 785647</td><td> N/A</td><td> N/A</td><td> 6981</td><td> 6996</td><td> ACCATTCTAT GCCTTT</td><td> A<sub>ks</sub><sup>m</sup>Cks<sup>m</sup>CdsAdsTdsTds <sup>m</sup>CdsT<sub>ds</sub>AdsT<sub>ds</sub>Gk<sub>S</sub><sup>m</sup>Ces mp Τ Τ T '-'ks 1 es<sup>1</sup> ks<sup>1</sup> k</td><td> 0</td><td> 1066</td>
<td> 785657</td><td> 1226</td><td> 1241</td><td> 10459</td><td> 10474</td><td> ACTGACACA GGCGGAT</td><td> A<sub>ks</sub><sup>m</sup>CksTdsGdsAds<sup>m</sup>Cds A<sub>ds</sub><sup>m</sup>CdsAdsGdsGds<sup>m</sup>Ce sGesGesAksTk</td><td> 0</td><td> 397</td>
<td> 785681</td><td> N/A</td><td> N/A</td><td> 6980</td><td> 6995</td><td> CCATTCTATG CCTTTT</td><td> mp mp ATT '-'ks '-'ks-^-ds A ds A ds dsT<sub>ds</sub>A<sub>ds</sub>T<sub>ds</sub>G<sub>ds</sub><sup>m</sup>C<sub>ds</sub><sup>m</sup>C esT<sub>es</sub>TesTksTk</td><td> 50</td><td> 1299</td>
<td> 785687</td><td> 1226</td><td> 1241</td><td> 10459</td><td> 10474</td><td> ACTGACACA GGCGGAT</td><td> A<sub>ks</sub><sup>m</sup>CkSTdsGdsAds<sup>m</sup>Cds A<sub>ds</sub><sup>m</sup>CdsAdsGdsGds<sup>m</sup>Ck sG<sub>ds</sub>Gk<sub>S</sub>A<sub>ds</sub>Tk</td><td> 6</td><td> 397</td>
<td> 785711</td><td> N/A</td><td> N/A</td><td> 6980</td><td> 6995</td><td> CCATTCTATG CCTTTT</td><td> m/־' m/־' att '-'ks '-'ksAds 1 ds 1 ds *-׳ dsT<sub>ds</sub>A<sub>ds</sub>T<sub>ds</sub>G<sub>ds</sub><sup>m</sup>Cds<sup>m</sup>C ksTdsTksT<sub>ds</sub>Tk</td><td> 46</td><td> 1299</td>
<td> 785721</td><td> 1226</td><td> 1241</td><td> 10459</td><td> 10474</td><td> ACTGACACA GGCGGAT</td><td> A<sub>ks</sub><sup>m</sup>CksTdsGdsAds<sup>m</sup>Cds A<sub>ds</sub><sup>m</sup>CdsAdsGdsGds<sup>m</sup>Ck sGesGksAesTk</td><td> 0</td><td> 397</td>
<td> 785722</td><td> 1227</td><td> 1242</td><td> 10460</td><td> 10475</td><td> CACTGACAC AGGCGGA</td><td><sup>m</sup>CksAkS<sup>m</sup>CdsT<sub>ds</sub>G<sub>ds</sub>Ads <sup>m</sup>CdsAds<sup>m</sup>CdsA<sub>ds</sub>G<sub>ds</sub>G<sub>k s</sub><sup>m</sup>C<sub>es</sub>Gk<sub>S</sub>G<sub>es</sub>Ak</td><td> 0</td><td> 387</td>
<td> 785764</td><td> N/A</td><td> N/A</td><td> 6980</td><td> 6995</td><td> CCATTCTATG CCTTTT</td><td> mp mp ATT '-'ks '-'ks-^-ds A ds A ds dsT<sub>ds</sub>A<sub>ds</sub>T<sub>ds</sub>G<sub>ds</sub><sup>m</sup>C<sub>ds</sub><sup>m</sup>C ksT<sub>es</sub>TksTesTk</td><td> 62</td><td> 1299</td>
<td> 785765</td><td> N/A</td><td> N/A</td><td> 6981</td><td> 6996</td><td> ACCATTCTAT GCCTTT</td><td> A<sub>ks</sub><sup>m</sup>Cks<sup>m</sup>CdsA<sub>ds</sub>T<sub>ds</sub>T<sub>ds </sub><sup>m</sup>CdsTdsAdsTdsGds<sup>m</sup>CkS mp τ τ τ Ves 1 ks 1 es 1 k</td><td> 40</td><td> 1066</td>
<td> 785774</td><td> 1227</td><td> 1242</td><td> 10460</td><td> 10475</td><td> CACTGACAC AGGCGGA</td><td><sup>m</sup>CksAkS<sup>m</sup>CksTdsG<sub>ds</sub>Ads <sup>m</sup>CdsAds<sup>m</sup>CdsA<sub>ds</sub>G<sub>ds</sub>G<sub>k s</sub><sup>m</sup>C<sub>ds</sub>GksG<sub>ds</sub>A<sub>k</sub></td><td> 0</td><td> 387</td>
<td> 785799</td><td> N/A</td><td> N/A</td><td> 6981</td><td> 6996</td><td> ACCATTCTAT GCCTTT</td><td> A<sub>ks</sub><sup>m</sup>Cks<sup>m</sup>CksAdsTdsTds <sup>m</sup>CdsT<sub>ds</sub>AdsT<sub>ds</sub>G<sub>ds</sub><sup>m</sup>Ck<sub>S </sub>m/־' τ τ τ '-'ds 1 ks A ds A k</td><td> 11</td><td> 1066</td>
<td> 785809</td><td> 1226</td><td> 1241</td><td> 10459</td><td> 10474</td><td> ACTGACACA GGCGGAT</td><td> Ak<sub>S</sub><sup>m</sup>CksTksGdsAds<sup>m</sup>Cds A<sub>ds</sub><sup>m</sup>CdsAdsGdsGds<sup>m</sup>Ck sGesGksAesTk</td><td> 0</td><td> 397</td>
<td> 785810</td><td> 1227</td><td> 1242</td><td> 10460</td><td> 10475</td><td> CACTGACAC AGGCGGA</td><td><sup>m</sup>CksAkS<sup>m</sup>CksTdsG<sub>ds</sub>Ads <sup>m</sup>CdsAds<sup>m</sup>CdsA<sub>ds</sub>G<sub>ds</sub>G<sub>k s</sub><sup>m</sup>CesGk<sub>s</sub>GesAk</td><td> 0</td><td> 387</td>
<td> 785852</td><td> N/A</td><td> N/A</td><td> 6980</td><td> 6995</td><td> CCATTCTATG CCTTTT</td><td> mp mp ATT '-'ks '-'ks-^-ks A ds A ds '-׳ dsT<sub>ds</sub>A<sub>ds</sub>T<sub>ds</sub>G<sub>ds</sub><sup>m</sup>C<sub>ds</sub><sup>m</sup>C ksTesTksTesTk</td><td> 44</td><td> 1299</td>
<td> 785853</td><td> N/A</td><td> N/A</td><td> 6981</td><td> 6996</td><td> ACCATTCTAT GCCTTT</td><td> A<sub>ks</sub><sup>m</sup>Cks<sup>m</sup>CksAdsTdsTds <sup>m</sup>CdsT<sub>ds</sub>A<sub>ds</sub>T<sub>ds</sub>G<sub>ds</sub><sup>m</sup>C<sub>ks </sub>mp τ τ τ Ves 1 ks 1 es 1 k</td><td> 15</td><td> 1066</td>
<td> 785862</td><td> 1227</td><td> 1242</td><td> 10460</td><td> 10475</td><td> CACTGACAC AGGCGGA</td><td><sup>m</sup>CksAkS<sup>m</sup>CksTdsG<sub>ds</sub>Ads <sup>m</sup>CdsAds<sup>m</sup>CdsA<sub>ds</sub>G<sub>ds</sub>G<sub>d s</sub><sup>m</sup>Ck<sub>s</sub>GesGk<sub>s</sub>A<sub>e</sub></td><td> 0</td><td> 387</td>
<td> 785887</td><td> N/A</td><td> N/A</td><td> 6981</td><td> 6996</td><td> ACCATTCTAT GCCTTT</td><td> A<sub>ks</sub><sup>m</sup>Cks<sup>m</sup>Ck<sub>S</sub>A<sub>ds</sub>T<sub>ds</sub>T<sub>ds </sub><sup>m</sup>CdsTdsAdsTdsGds<sup>m</sup>Cds mp Τ Τ T Cks 1 es 1 ks 1 e</td><td> 49</td><td> 1066</td>
<td> 785897</td><td> 1226</td><td> 1241</td><td> 10459</td><td> 10474</td><td> ACTGACACA GGCGGAT</td><td> Ak<sub>S</sub><sup>m</sup>CksTksGdsAds<sup>m</sup>Cds A<sub>ds</sub><sup>m</sup>CdsAdsGdsGds<sup>m</sup>Cd sGk<sub>S</sub>Gk<sub>S</sub>Ak<sub>S</sub>T <sub>e</sub></td><td> 0</td><td> 397</td>
<td> 785898</td><td> 1227</td><td> 1242</td><td> 10460</td><td> 10475</td><td> CACTGACAC AGGCGGA</td><td><sup>m</sup>CksAkS<sup>m</sup>CksTdsG<sub>ds</sub>A<sub>ds </sub><sup>m</sup>CdsAds<sup>m</sup>CdsA<sub>ds</sub>G<sub>ds</sub>G<sub>d s</sub><sup>m</sup>Ck<sub>s</sub>Gk<sub>s</sub>G<sub>ks</sub>Ae</td><td> 0</td><td> 387</td>
<td> 785938</td><td> N/A</td><td> N/A</td><td> 6548</td><td> 6563</td><td> CCAATTTTGC ATTCCA</td><td><sup>m</sup>Cks<sup>m</sup>CkSAksA<sub>ds</sub>T<sub>ds</sub>T<sub>ds </sub>T<sub>ds</sub>T<sub>ds</sub>G<sub>ds</sub><sup>m</sup>C<sub>ds</sub>A<sub>ds</sub>T<sub>ds</sub>T <sub>ks</sub><sup>m</sup>CkS<sup>m</sup>CkSAe</td><td> 0</td><td> 1242</td>
<td> 785940</td><td> N/A</td><td> N/A</td><td> 6980</td><td> 6995</td><td> CCATTCTATG CCTTTT</td><td> mp mp ATT Cks Cks-^-ks A ds A ds C <sub>ds</sub>T<sub>ds</sub>A<sub>ds</sub>T<sub>ds</sub>G<sub>ds</sub><sup>m</sup>Cds<sup>m</sup>C dsTksTksTksT<sub>e</sub></td><td> 58</td><td> 1299</td>
<td> 785941</td><td> N/A</td><td> N/A</td><td> 6981</td><td> 6996</td><td> ACCATTCTAT GCCTTT</td><td> A<sub>ks</sub><sup>m</sup>Cks<sup>m</sup>CksAdsTdsTds <sup>m</sup>CdsT<sub>ds</sub>A<sub>ds</sub>T<sub>ds</sub>G<sub>ds</sub><sup>m</sup>C<sub>ds </sub>mp Τ Τ T '-'ks 1 ks 1 ks 1 e</td><td> 59</td><td> 1066</td>
<td> 786551</td><td> N/A</td><td> N/A</td><td> 6979</td><td> 6994</td><td> CATTCTATGC CTTTTA</td><td> me a τ τ m/־' τ CksAks 1 ks 1 ds Cds 1 ds A<sub>ds</sub>T<sub>ds</sub>G<sub>ds</sub><sup>m</sup>Cds<sup>m</sup>CdsT<sub>ds </sub>T<sub>ds</sub>TksTksAk</td><td> 24</td><td> 1298</td>
<td> 786552</td><td> N/A</td><td> N/A</td><td> 6980</td><td> 6995</td><td> CCATTCTATG CCTTTT</td><td> m/־' m/־' λ τ τ me Cks CksAks 1 ds 1 ds C <sub>ds</sub>T<sub>ds</sub>A<sub>ds</sub>T<sub>ds</sub>G<sub>ds</sub><sup>m</sup>Cds<sup>m</sup>C dsT<sub>ds</sub>TksTksTk</td><td> 43</td><td> 1299</td>
<td> 786553</td><td> N/A</td><td> N/A</td><td> 6982</td><td> 6997</td><td> AACCATTCT ATGCCTT</td><td> AksAks<sup>m</sup>Cks<sup>m</sup>C<sub>ds</sub>A<sub>ds</sub>T<sub>ds</sub> m י~/ τ A τ י־/1מ τ Ids Cds A dsAds A dsCds m/־' τ τ Cds Cks 1 ks 1 k</td><td> 33</td><td> 1300</td>
<td> 786554</td><td> N/A</td><td> N/A</td><td> 6983</td><td> 6998</td><td> AAACCATTC TATGCCT</td><td> A<sub>ks</sub>A<sub>ks</sub>A<sub>ks</sub><sup>m</sup>Cds<sup>m</sup>CdsA<sub>d </sub>sT<sub>ds</sub>T<sub>ds</sub><sup>m</sup>C<sub>ds</sub>T<sub>ds</sub>A<sub>ds</sub>T<sub>ds </sub>/~י m/־' m<x τ Cds Cks Cks 1 k</td><td> 0</td><td> 1301</td>
<td> 786555</td><td> N/A</td><td> N/A</td><td> 6984</td><td> 6999</td><td> TAAACCATT CTATGCC</td><td> TksAksAksAds’Tds’Tds A<sub>ds</sub>T<sub>ds</sub>T<sub>ds</sub><sup>m</sup>C<sub>ds</sub>T<sub>ds</sub>A<sub>ds</sub>T '־/m/-' m י~/ dsCks Cks Ck</td><td> 9</td><td> 1302</td>
<td> 786556</td><td> N/A</td><td> N/A</td><td> 6985</td><td> 7000</td><td> CTAAACCAT TCTATGC</td><td> “CksTksAksAdsAdsTds me a τ τ י־/1מ τ CdsAdsldslds CdsAds A<sub>ds</sub>Tk<sub>S</sub>Gks<sup>m</sup>Ck</td><td> 0</td><td> 1303</td>
<td> 786557</td><td> N/A</td><td> N/A</td><td> 6987</td><td> 7002</td><td> CTCTAAACC ATTCTAT</td><td><sup>m</sup>CksTks<sup>m</sup>CksTdsA<sub>ds</sub>A<sub>ds </sub>A<sub>ds</sub><sup>m</sup>Cds<sup>m</sup>CdsA<sub>ds</sub>T<sub>ds</sub>T<sub>ds </sub><sup>m</sup>C<sub>ds</sub>TksAk<sub>S</sub>Tk</td><td> 0</td><td> 1304</td>
<td> 786558</td><td> N/A</td><td> N/A</td><td> 6989</td><td> 7004</td><td> TGCTCTAAA CCATTCT</td><td> τ י־/1מ τ י־/1מ י~/ τ 1 ksCks Cks A ds Cds A ds A<sub>ds</sub>A<sub>ds</sub>A<sub>ds</sub><sup>m</sup>Cds<sup>m</sup>CdsA<sub>d</sub> יך mp יך<sup>,</sup> יך si ds Iks Cks Ik</td><td> 0</td><td> 1305</td>
<td> 786559</td><td> N/A</td><td> N/A</td><td> 6991</td><td> 7006</td><td> TTTGCTCTAA ACCATT</td><td> τ τ τ τ m A ks A ks A ksCds Cds A ds C<sub>ds</sub>T<sub>ds</sub>A<sub>ds</sub>A<sub>ds</sub>A<sub>ds</sub><sup>m</sup>C<sub>ds</sub><sup>m</sup> C’dsAksTksTk</td><td> 2</td><td> 1306</td>
<td> 786560</td><td> N/A</td><td> N/A</td><td> 6994</td><td> 7009</td><td> CTTTTTGCTC TAAACC</td><td> me τ τ τ τ τ /~י Cks AksAksAdsAdsA dsC <sub>ds</sub><sup>m</sup>CdsTds<sup>m</sup>CdsT<sub>ds</sub>A<sub>ds</sub>A <sub>ds</sub>A<sub>ks</sub><sup>m</sup>Cks<sup>m</sup>Ck</td><td> 0</td><td> 1307</td>
<td> 786561</td><td> N/A</td><td> N/A</td><td> 6997</td><td> 7012</td><td> AGACTTTTTG CTCTAA</td><td> A<sub>ks</sub>G<sub>ks</sub>A<sub>ks</sub><sup>m</sup>C<sub>ds</sub>T<sub>ds</sub>T<sub>ds</sub> τ m י־/1מ י~/ τ τ τ AdsAdsAdsCds Cds A ds C<sub>ds</sub>T<sub>ks</sub>A<sub>ks</sub>A<sub>k</sub></td><td> 0</td><td> 1308</td>
<td> 786587</td><td> N/A</td><td> N/A</td><td> 6948</td><td> 6963</td><td> ACTGTATTA CCTATAC</td><td> Ak<sub>S</sub><sup>m</sup>CksTk<sub>S</sub>GdsTdsAd<sub>S</sub> T T A T 1 ds<sup>1</sup> ds^ds '-'ds '-'ds<sup>1</sup> ds Ad<sub>S</sub>Tk<sub>S</sub>Aks<sup>m</sup>Ck</td><td> 22</td><td> 1309</td>
<td> 786588</td><td> N/A</td><td> N/A</td><td> 6949</td><td> 6964</td><td> GACTGTATT ACCTATA</td><td> GksAks<sup>m</sup>CksTdsGdsTds AdSTdSTdsAds<sup>m</sup>Cds<sup>m</sup>Cds TdSA<sub>ks</sub>T<sub>ks</sub>Ak</td><td> 41</td><td> 1310</td>
<td> 786589</td><td> N/A</td><td> N/A</td><td> 6950</td><td> 6965</td><td> TGACTGTATT ACCTAT</td><td> TksGksAks<sup>m</sup>CdsTdsGds TdsAd<sub>S</sub>Td<sub>S</sub>T<sub>ds</sub>Ads<sup>m</sup>Cds<sup>m </sup>CdsTksAksTk</td><td> 18</td><td> 1311</td>
<td> 786590</td><td> N/A</td><td> N/A</td><td> 6951</td><td> 6966</td><td> GTGACTGTA TTACCTA</td><td> GksTk<sub>S</sub>Gk<sub>S</sub>Ad<sub>S</sub><sup>m</sup>CdsTds GdsTdsAdSTdSTdSAdS<sup>m </sup>Cds<sup>m</sup>CksTksAk</td><td> 62</td><td> 1312</td>
<td> 786591</td><td> N/A</td><td> N/A</td><td> 6952</td><td> 6967</td><td> TGTGACTGT ATTACCT</td><td> TksGk<sub>S</sub>Tk<sub>S</sub>GdsAd<sub>S</sub><sup>m</sup>Cds TdsGdsTd<sub>S</sub>Ad<sub>S</sub>Td<sub>S</sub>Td<sub>S</sub>Ad mp mp <sup>1</sup>־p s '-'ks '-'ks 1 k</td><td> 81</td><td> 1313</td>
<td> 786592</td><td> N/A</td><td> N/A</td><td> 6953</td><td> 6968</td><td> TTGTGACTGT ATTACC</td><td> Tk<sub>S</sub>Tk<sub>S</sub>GksTd<sub>S</sub>GdsAd<sub>S</sub><sup>m </sup>CdsTdsGdsTdsAdSTdSTd sAks<sup>m</sup>Cks<sup>m</sup>Ck</td><td> 56</td><td> 1314</td>
<td> 786593</td><td> N/A</td><td> N/A</td><td> 6954</td><td> 6969</td><td> TTTGTGACTG TATTAC</td><td> TksTksTksGdsTdsGdsAd <sub>s</sub><sup>m</sup>CdsTdsGdsTd<sub>S</sub>Ad<sub>S</sub>Tds Tk<sub>S</sub>A<sub>ks</sub><sup>m</sup>Ck</td><td> 50</td><td> 1315</td>
<td> 786594</td><td> N/A</td><td> N/A</td><td> 6955</td><td> 6970</td><td> TTTTGTGACT GTATTA</td><td> TksTk<sub>S</sub>Tk<sub>S</sub>Td<sub>S</sub>GdsTdsGds Ads<sup>m</sup>CdsTdsGdsTdsAds TksTksAk</td><td> 2</td><td> 1316</td>
<td> 786595</td><td> N/A</td><td> N/A</td><td> 6956</td><td> 6971</td><td> ATTTTGTGAC TGTATT</td><td> AksTk<sub>S</sub>Tk<sub>S</sub>Td<sub>S</sub>Td<sub>S</sub>GdsTds GdsAds<sup>m</sup>CdsTdsGdsTds AksTksTk</td><td> 4</td><td> 1317</td>
<td> 786596</td><td> N/A</td><td> N/A</td><td> 6957</td><td> 6972</td><td> AATTTTGTG ACTGTAT</td><td> AksAksTksTdsTdsTdsGd sTdsGdsAds<sup>m</sup>CdsTdsGds TksAksTk</td><td> 0</td><td> 1318</td>
<td> 786597</td><td> N/A</td><td> N/A</td><td> 6959</td><td> 6974</td><td> TGAATTTTGT GACTGT</td><td> TksGksAksAdsTdsTdsTd sTdsGdsTd<sub>S</sub>Gd<sub>S</sub>Ad<sub>S</sub><sup>m</sup>Cds TksGksTk</td><td> 64</td><td> 1319</td>
<td> 786598</td><td> N/A</td><td> N/A</td><td> 6960</td><td> 6975</td><td> TTGAATTTTG TGACTG</td><td> TksTksGksAdsAdsTdsTd sTdsTdsGdsTdsGdsAds™ CksTksGk</td><td> 45</td><td> 1320</td>
<td> 786599</td><td> N/A</td><td> N/A</td><td> 6961</td><td> 6976</td><td> GTTGAATTTT GTGACT</td><td> GksTksTksGdsAdsAdsTd sTdsTdsTdsGdsTdsGdsA mp יך ks '-'ks A k</td><td> 0</td><td> 1321</td>
<td> 786600</td><td> N/A</td><td> N/A</td><td> 6962</td><td> 6977</td><td> TGTTGAATTT TGTGAC</td><td> TksGksTksTdsGdsAdsAd sTdsTd<sub>S</sub>Td<sub>S</sub>Td<sub>S</sub>GdsTdsGk <sub>s</sub>Aks<sup>m</sup>Ck</td><td> 26</td><td> 1322</td>
Table 25
Inhibition of IRF5 mRNA by modified oligonucleotides targeting SEQ ID NO: 1 and 2
<td> Compound Number</td><td> SEQ ID NO: 1 Start Site</td><td> SEQ ID NO: 1 Stop Site</td><td> SEQ ID NO: 2 Start Site</td><td> SEQ ID NO: 2 Stop Site</td><td> Sequence (5' to 3')</td><td> Chemistry Notation</td><td> % Inhibition</td><td> SEQ ID NO</td>
<td> 728466</td><td> 427</td><td> 442</td><td> 8320</td><td> 8335</td><td> GGTGTATTTC CCTGTC</td><td> GksGksTksGdsTdsAds τ τ τ mp mp m 1 ds<sup>1</sup> ds<sup>1</sup> ds '-'ds '-'ds τ τ m/־> '-'ds 1 dskJks 1 ks '-'k</td><td> 12</td><td> 1254</td>
<td> 728489</td><td> 484</td><td> 499</td><td> 8377</td><td> 8392</td><td> AAGGGCACAG CGCAGG</td><td> A<sub>ks</sub>AksGk<sub>S</sub>G<sub>ds</sub>G<sub>ds</sub><sup>m</sup>C dsAds<sup>m</sup>CdsA<sub>ds</sub>G<sub>ds</sub><sup>m</sup>Cd sGds<sup>m</sup>CdsAksGksGk</td><td> 0</td><td> 1249</td>
<td> 728670</td><td> 1230</td><td> 1245</td><td> 10463</td><td> 10478</td><td> TTGCACTGAC ACAGGC</td><td> Tk<sub>S</sub>TksGks<sup>m</sup>CdsAds<sup>m</sup>C dsT<sub>ds</sub>G<sub>ds</sub>A<sub>ds</sub><sup>m</sup>CdsAds<sup>m </sup>CdsA<sub>ds</sub>G<sub>ks</sub>G<sub>ks</sub><sup>m</sup>Ck</td><td> 6</td><td> 398</td>
<td> 728708</td><td> 1308</td><td> 1323</td><td> 10541</td><td> 10556</td><td> AGCTTGGTCT TGACCT</td><td> AksGks<sup>m</sup>CksTdsTdsGd /~י τ m/־> τ τ /~י s<Jdslds Cds 1 ds 1 ds<Jd sAds<sup>m</sup>Cks<sup>m</sup>CksTk</td><td> 11</td><td> 436</td>
<td> 729513</td><td> N/A</td><td> N/A</td><td> 7316</td><td> 7331</td><td> CCCAATGCAA CATCCA</td><td> mp mp mp a a '-'ks '-'ks Mcs-^'ds-^'ds T<sub>ds</sub>G<sub>ds</sub><sup>m</sup>CdsAdsAds<sup>m </sup>CdsA<sub>ds</sub>T<sub>ds</sub><sup>m</sup>Cks<sup>m</sup>Ck<sub>S</sub> Ak</td><td> 12</td><td> 1097</td>
<td> 785349</td><td> 427</td><td> 442</td><td> 8320</td><td> 8335</td><td> GGTGTATTTC CCTGTC</td><td> GksGd<sub>S</sub>Td<sub>S</sub>Gd<sub>S</sub>Td<sub>S</sub>Ad<sub>S</sub> Τ Τ T mp mp m 1 ds 1 ds 1 ds '-'ds '-'ds p Τ P T mp '-'ks 1 eskJks 1 es '-'k</td><td> 0</td><td> 1254</td>
<td> 785398</td><td> N/A</td><td> N/A</td><td> 7314</td><td> 7329</td><td> CAATGCAACA TCCATC</td><td><sup>m</sup>CksAdsAdsTdsGds<sup>m </sup>CdsA<sub>d</sub>sA<sub>d</sub>s<sup>m</sup>C<sub>ds</sub>A<sub>d</sub>sT<sub>d </sub>mp mp a τ mp s V-ks '-'es-^-ks<sup>1</sup> es '-'k</td><td> 0</td><td> 1323</td>
<td> 785399</td><td> N/A</td><td> N/A</td><td> 7316</td><td> 7331</td><td> CCCAATGCAA CATCCA</td><td><sup>m</sup>Cks<sup>m</sup>Cds<sup>m</sup>CdsA<sub>d</sub>sA<sub>d</sub>s T<sub>ds</sub>G<sub>ds</sub><sup>m</sup>CdsAdsAds<sup>m </sup>CdsA<sub>ks</sub>T<sub>es</sub><sup>m</sup>CkS<sup>m</sup>CeSA k</td><td> 0</td><td> 1097</td>
<td> 785404</td><td> 427</td><td> 442</td><td> 8320</td><td> 8335</td><td> GGTGTATTTC CCTGTC</td><td> GksGd<sub>S</sub>Td<sub>S</sub>Gd<sub>S</sub>Td<sub>S</sub>Ad<sub>S</sub> Τ Τ T mp mp m 1 ds 1 ds 1 ds '-'ds '-'ks p τ p τ mp '-'esAkskJes Aks '-׳e</td><td> 0</td><td> 1254</td>
<td> 785453</td><td> N/A</td><td> N/A</td><td> 7314</td><td> 7329</td><td> CAATGCAACA TCCATC</td><td><sup>m</sup>CksA<sub>ds</sub>A<sub>d</sub>sT<sub>ds</sub>G<sub>ds</sub><sup>m </sup>CdsAdsAds CdsAdsTk mp mp a <sup>1</sup>־p mp s Ves '-ks^esAks V/e</td><td> 0</td><td> 1323</td>
<td> 785454</td><td> N/A</td><td> N/A</td><td> 7316</td><td> 7331</td><td> CCCAATGCAA CATCCA</td><td><sup>m</sup>Cks<sup>m</sup>Cds<sup>m</sup>CdsA<sub>d</sub>sA<sub>d</sub>s T<sub>ds</sub>G<sub>ds</sub><sup>m</sup>C<sub>ds</sub>A<sub>ds</sub>A<sub>ds</sub><sup>m </sup>PAT <sup>m</sup>P <sup>m</sup>P A '-׳ks-^'esAks '-'es '-'ks-*' e</td><td> 0</td><td> 1097</td>
<td> 785459</td><td> 427</td><td> 442</td><td> 8320</td><td> 8335</td><td> GGTGTATTTC CCTGTC</td><td> GksGesTksGdsTdsAds τ τ τ mp mp m A ds A ds A ds '-'ds '-'ds p Τ P T <sup>m</sup>P '-'ds A eskJes A ks '-'k</td><td> 5</td><td> 1254</td>
<td> 785487</td><td> N/A</td><td> N/A</td><td> 7316</td><td> 7331</td><td> CCCAATGCAA CATCCA</td><td><sup>m</sup>Ck<sub>S</sub><sup>m</sup>CeS<sup>m</sup>CksA<sub>ds</sub>A<sub>ds </sub>T<sub>ds</sub>G<sub>ds</sub><sup>m</sup>C<sub>ds</sub>A<sub>ds</sub>A<sub>ds</sub><sup>m </sup>PAT <sup>m</sup>P <sup>m</sup>P A '-'ds^'ds<sup>1</sup> es '-'es '-׳ks*' k</td><td> 0</td><td> 1097</td>
<td> 785493</td><td> 426</td><td> 441</td><td> 8319</td><td> 8334</td><td> GTGTATTTCC CTGTCT</td><td> GksTksGdsTdsAdsTds mp mp mp יך יך׳ 1 ds 1 ds '-'ds '-'ds '-'ds Τ p T mp יך 1 dskJks 1 es '-'ks 1 e</td><td> 0</td><td> 1324</td>
<td> 785494</td><td> 427</td><td> 442</td><td> 8320</td><td> 8335</td><td> GGTGTATTTC CCTGTC</td><td> GksGksT dsGdsT ds Ads Τ Τ T mp mp m 1 ds 1 ds 1 ds '-'ds '-'ds P Τ p T mp '-'ds 1 kskJes 1 ks '-׳e</td><td> 21</td><td> 1254</td>
<td> 785541</td><td> N/A</td><td> N/A</td><td> 7315</td><td> 7330</td><td> CCAATGCAAC ATCCAT</td><td><sup>m</sup>CkS<sup>m</sup>CkSA<sub>ds</sub>A<sub>ds</sub>T<sub>ds </sub>G<sub>ds</sub><sup>m</sup>CdSAdSAds<sup>m</sup>CdS A<sub>ds</sub>T<sub>ds</sub><sup>m</sup>CkS<sup>m</sup>CeSA<sub>ks</sub>T e</td><td> 0</td><td> 1325</td>
<td> 785542</td><td> N/A</td><td> N/A</td><td> 7316</td><td> 7331</td><td> CCCAATGCAA CATCCA</td><td><sup>m</sup>Cks<sup>m</sup>Cks<sup>m</sup>CdsAdsAds TdsGds<sup>m</sup>CdsA<sub>ds</sub>Ads<sup>m </sup>PAT A '-'ds-^-ds<sup>1</sup> ks '-'es '-׳ks<sup>7</sup>' e</td><td> 0</td><td> 1097</td>
<td> 785547</td><td> 426</td><td> 441</td><td> 8319</td><td> 8334</td><td> GTGTATTTCC CTGTCT</td><td> GksTksGdsTdsAdsTds <sup>1</sup>־p יך mp mp mp Ids Ids '-'ds '-'ds Ves Τ Τ' Τ <sup>m</sup>T T 1 eskJes 1 es '-'ks 1 k</td><td> 0</td><td> 1324</td>
<td> 785573</td><td> N/A</td><td> N/A</td><td> 7315</td><td> 7330</td><td> CCAATGCAAC ATCCAT</td><td><sup>m</sup>Cks<sup>m</sup>CksAdsAdsTds Gds<sup>m</sup>CdsAdsAds<sup>m</sup>Cds AesTes<sup>m</sup>Ces<sup>m</sup>CesA<sub>k</sub>sT k</td><td> 0</td><td> 1325</td>
<td> 785581</td><td> 426</td><td> 441</td><td> 8319</td><td> 8334</td><td> GTGTATTTCC CTGTCT</td><td> GksTksGdsTdsAdsTds <sup>1</sup>־p יך mp mp mp 1 ds 1 ds '-'ds '-'ds '-'ks Τ Τ' Τ <sup>m</sup>T T 1 eskJks 1 es '-'ks 1 k</td><td> 0</td><td> 1324</td>
<td> 785582</td><td> 427</td><td> 442</td><td> 8320</td><td> 8335</td><td> GGTGTATTTC CCTGTC</td><td> GksGksT dsGdsT ds Ads Τ Τ T mp mp m 1 ds 1 ds 1 ds '-'ds '-'ks p Τ Τ' T <sup>m</sup>T Ves 1 kskJes 1 ks '-'k</td><td> 0</td><td> 1254</td>
<td> 785648</td><td> N/A</td><td> N/A</td><td> 7314</td><td> 7329</td><td> CAATGCAACA TCCATC</td><td><sup>m</sup>CksAksAdsTdsGds<sup>m </sup>CdsAdsAds<sup>m</sup>CdsAdSTk mp mp a יך mp s Ves '-'ks-^-es 1 ks Vk</td><td> 0</td><td> 1323</td>
<td> 785649</td><td> N/A</td><td> N/A</td><td> 7315</td><td> 7330</td><td> CCAATGCAAC ATCCAT</td><td><sup>m</sup>Cks<sup>m</sup>CksAdsAdsTds Gds<sup>m</sup>CdsAdsAds<sup>m</sup>Cds AksTes<sup>m</sup>Cks<sup>m</sup>CesAksT k</td><td> 0</td><td> 1325</td>
<td> 785650</td><td> N/A</td><td> N/A</td><td> 7316</td><td> 7331</td><td> CCCAATGCAA CATCCA</td><td> mp mp mp a A '-'ks '-'ks '-'ds<sup>7</sup>'ds<sup>7</sup>'ds TdsGds<sup>m</sup>CdsAdsA<sub>d</sub>s<sup>m </sup>CksAesTks<sup>m</sup>Ces<sup>m</sup>CksA k</td><td> 0</td><td> 1097</td>
<td> 785656</td><td> 426</td><td> 441</td><td> 8319</td><td> 8334</td><td> GTGTATTTCC CTGTCT</td><td> GksTksGdsTdsAdsTds <sup>1</sup>־p יך mp mp mp 1 ds 1 ds '-'ds '-'ds '-'ds Τ Τ' T <sup>m</sup>T T 1 eskJes 1 es '-'ks 1 k</td><td> 16</td><td> 1324</td>
<td> 785682</td><td> N/A</td><td> N/A</td><td> 7315</td><td> 7330</td><td> CCAATGCAAC ATCCAT</td><td><sup>m</sup>Cks<sup>m</sup>CksAdsAdsTds Gds<sup>m</sup>CdsAdsAds<sup>m</sup>Cds A<sub>d</sub>sTes<sup>m</sup>Ces<sup>m</sup>CesAksT k</td><td> 0</td><td> 1325</td>
<td> 785686</td><td> 426</td><td> 441</td><td> 8319</td><td> 8334</td><td> GTGTATTTCC CTGTCT</td><td> GksTksGdsTdsAdsTds <sup>1</sup>־p יך mp mp mp 1 ds 1 ds '-'ds '-'ds '-'ds τ /~י τ τ 1 kskJds 1 ks '-'ds 1 k</td><td> 0</td><td> 1324</td>
<td> 785712</td><td> N/A</td><td> N/A</td><td> 7315</td><td> 7330</td><td> CCAATGCAAC ATCCAT</td><td><sup>m</sup>Cks<sup>m</sup>CksAdsAdsTds Gds<sup>m</sup>CdsAdsAds<sup>m</sup>Cds AdsTks<sup>m</sup>Cds<sup>m</sup>CksA<sub>d</sub>sT k</td><td> 0</td><td> 1325</td>
<td> 785718</td><td> 426</td><td> 441</td><td> 8319</td><td> 8334</td><td> GTGTATTTCC CTGTCT</td><td> GksTksGdsTdsAdsTds יך יך mp mp mp 1 ds<sup>1</sup> ds '-'ds '-'ds '-'ds Τ P T nip יך Iks^Jeslks '-'es^k</td><td> 0</td><td> 1324</td>
<td> 785719</td><td> 427</td><td> 442</td><td> 8320</td><td> 8335</td><td> GGTGTATTTC CCTGTC</td><td> GksGksT dsGdsT ds Ads Τ Τ T mp mp m 1 ds 1 ds 1 ds '-'ds '-'ds Ρ Τ ρ T mp '-'ks<sup>1</sup> es^Jks<sup>1</sup> es '-'k</td><td> 26</td><td> 1254</td>
<td> 785766</td><td> N/A</td><td> N/A</td><td> 7315</td><td> 7330</td><td> CCAATGCAAC ATCCAT</td><td><sup>m</sup>CkS<sup>m</sup>CkSA<sub>ds</sub>A<sub>ds</sub>T<sub>ds </sub>G<sub>ds</sub><sup>m</sup>CdSAdSAds<sup>m</sup>CdS AdsT<sub>ks</sub><sup>m</sup>CeS<sup>m</sup>CksAe<sub>S</sub>T k</td><td> 0</td><td> 1325</td>
<td> 785767</td><td> N/A</td><td> N/A</td><td> 7316</td><td> 7331</td><td> CCCAATGCAA CATCCA</td><td><sup>m</sup>Cks<sup>m</sup>Cks<sup>m</sup>CdsAdsAds TdsGds<sup>m</sup>CdsA<sub>ds</sub>Ads<sup>m </sup>PAT A V-ds^ks<sup>1</sup> es '-'ks Ves-cv k</td><td> 0</td><td> 1097</td>
<td> 785772</td><td> 427</td><td> 442</td><td> 8320</td><td> 8335</td><td> GGTGTATTTC CCTGTC</td><td> GksGksTksGdsTdsAds Τ Τ T mp mp m 1 ds 1 ds 1 ds '-'ds '-'ds ^/m ד e יך e '-'ks A ds'Jks 1 ds Me</td><td> 1</td><td> 1254</td>
<td> 785800</td><td> N/A</td><td> N/A</td><td> 7316</td><td> 7331</td><td> CCCAATGCAA CATCCA</td><td><sup>m</sup>Cks<sup>m</sup>Cks<sup>m</sup>CksAdsAds TdsGds<sup>m</sup>CdsA<sub>ds</sub>Ads<sup>m </sup>PAT V-ds^ks<sup>1</sup> ds '-'ks '-'ds Ak</td><td> 0</td><td> 1097</td>
<td> 785806</td><td> 426</td><td> 441</td><td> 8319</td><td> 8334</td><td> GTGTATTTCC CTGTCT</td><td> GksTksGksTdsAdsTds יך יך mp mp mp 1 ds 1 ds '-'ds '-'ds '-'ds יך mp יך p יך Iks'Jesiks '-'es^k</td><td> 0</td><td> 1324</td>
<td> 785807</td><td> 427</td><td> 442</td><td> 8320</td><td> 8335</td><td> GGTGTATTTC CCTGTC</td><td> GksGksTksGdsTdsAds Τ Τ T mp mp m 1 ds 1 ds 1 ds '-'ds '-'ds ρ Τ T '-'ks 1 esvJks 1 es '-'k</td><td> 0</td><td> 1254</td>
<td> 785854</td><td> N/A</td><td> N/A</td><td> 7315</td><td> 7330</td><td> CCAATGCAAC ATCCAT</td><td><sup>m</sup>Cks<sup>m</sup>CkSAksA<sub>ds</sub>T<sub>ds </sub>G<sub>ds</sub><sup>m</sup>CdsAdsAds<sup>m</sup>Cds AdsTks^es^ksAesT k</td><td> 0</td><td> 1325</td>
<td> 785855</td><td> N/A</td><td> N/A</td><td> 7316</td><td> 7331</td><td> CCCAATGCAA CATCCA</td><td> mp mp mp a A '-'ks '-'ks '-׳ks^'ds^'ds T<sub>ds</sub>G<sub>ds</sub><sup>m</sup>CdsAdsAds<sup>m </sup>CdsA<sub>ks</sub>Te<sub>S</sub><sup>m</sup>Cks<sup>m</sup>Ce<sub>S</sub>A k</td><td> 0</td><td> 1097</td>
<td> 785860</td><td> 427</td><td> 442</td><td> 8320</td><td> 8335</td><td> GGTGTATTTC CCTGTC</td><td> GksGksTksGdsTdsAds Τ Τ T mp mp m 1 ds 1 ds 1 ds '-'ds '-'ds ρ Τ T '-'ds 1 ks'Jes 1 ks '-׳e</td><td> 0</td><td> 1254</td>
<td> 785888</td><td> N/A</td><td> N/A</td><td> 7316</td><td> 7331</td><td> CCCAATGCAA CATCCA</td><td> mp mp mp a A '-'ks '-'ks '-׳ks^'ds^'ds T<sub>ds</sub>G<sub>ds</sub><sup>m</sup>C<sub>ds</sub>A<sub>ds</sub>Ads<sup>m </sup>CdsAdsT^Ces^ksA e</td><td> 0</td><td> 1097</td>
<td> 785894</td><td> 426</td><td> 441</td><td> 8319</td><td> 8334</td><td> GTGTATTTCC CTGTCT</td><td> GksTksGksT<sub>ds</sub>A<sub>ds</sub>T<sub>ds </sub>יך יך mp mp mp 1 ds 1 ds '-'ds '-'ds '-'ds יד '־/m יד י~/ יד 1 dsvJks 1 ks '-'ks 1 e</td><td> 30</td><td> 1324</td>
<td> 785895</td><td> 427</td><td> 442</td><td> 8320</td><td> 8335</td><td> GGTGTATTTC CCTGTC</td><td> GksGksTksGdsTdsAds Τ Τ T mp mp m 1 ds 1 ds 1 ds '-'ds '-'ds י־/1מ יד יד '-'ds 1 ksvJks 1 ks '-'e</td><td> 0</td><td> 1254</td>
<td> 785938</td><td> N/A</td><td> N/A</td><td> 6548</td><td> 6563</td><td> CCAATTTTGC ATTCCA</td><td><sup>m</sup>Cks<sup>m</sup>CksAksAdsTdsT dsTdSTdsGds<sup>m</sup>CdsA<sub>ds</sub>T dsTks<sup>m</sup>Cks<sup>m</sup>CksA־</td><td> 61</td><td> 1242</td>
<td> 785942</td><td> N/A</td><td> N/A</td><td> 7315</td><td> 7330</td><td> CCAATGCAAC ATCCAT</td><td><sup>m</sup>Cks<sup>m</sup>Ck<sub>S</sub>A<sub>ks</sub>A<sub>ds</sub>T<sub>ds </sub>G<sub>ds</sub><sup>m</sup>CdsAdsAds<sup>m</sup>Cds A<sub>ds</sub>T<sub>ds</sub><sup>m</sup>Cks<sup>m</sup>CksAksT e</td><td> 16</td><td> 1325</td>
<td> 785943</td><td> N/A</td><td> N/A</td><td> 7316</td><td> 7331</td><td> CCCAATGCAA CATCCA</td><td><sup>m</sup>Cks<sup>m</sup>Cks<sup>m</sup>C<sub>ks</sub>AdsAds T<sub>ds</sub>G<sub>ds</sub><sup>m</sup>CdsAdsAds<sup>m </sup>CdsA<sub>ds</sub>Tks<sup>m</sup>Cks<sup>m</sup>Cks A<sub>e</sub></td><td> 0</td><td> 1097</td>
<td> 786494</td><td> 428</td><td> 443</td><td> 8321</td><td> 8336</td><td> CGGTGTATTT CCCTGT</td><td><sup>m</sup>CksGksGk<sub>S</sub>T<sub>ds</sub>G<sub>ds</sub>T<sub>d</sub> A Τ Τ T <sup>m</sup> s-^-ds 1 ds 1 ds 1 ds '-'ds τ י~/ τ י־/1מ '-'ds '-'ds 1 ksvJks 1 k</td><td> 0</td><td> 1326</td>
<td> 786562</td><td> N/A</td><td> N/A</td><td> 7307</td><td> 7322</td><td> ACATCCATCA ATGAGG</td><td> A<sub>ks</sub><sup>m</sup>CkSAksTds<sup>m</sup>Cds<sup>m </sup>CdsAdsTds CdsAdsAd sTdsGdsAksGksGk</td><td> 0</td><td> 1327</td>
<td> 786563</td><td> N/A</td><td> N/A</td><td> 7309</td><td> 7324</td><td> CAACATCCAT CAATGA</td><td> “CksAksAks’TdsAds τ י־/1מ λ τ m Ids Cds CdsAdslds C<sub>ds</sub>A<sub>ds</sub>A<sub>ds</sub>T<sub>ks</sub>G<sub>ks</sub>A<sub>k</sub></td><td> 0</td><td> 1328</td>
<td> 786564</td><td> N/A</td><td> N/A</td><td> 7311</td><td> 7326</td><td> TGCAACATCC ATCAAT</td><td> TksGksTksAdsAds“ C<sub>ds</sub>A<sub>ds</sub>T<sub>ds</sub><sup>m</sup>Cds<sup>m</sup>Cds A<sub>ds</sub>T<sub>ds</sub><sup>m</sup>C<sub>ds</sub>Ak<sub>S</sub>Ak<sub>S</sub>Tk</td><td> 0</td><td> 1329</td>
<td> 786565</td><td> N/A</td><td> N/A</td><td> 7312</td><td> 7327</td><td> ATGCAACATC CATCAA</td><td> Α^Τ^Ο^ CdsAdsAd s CdsAdslds Cds Cd sAdsTds C^A^Aly</td><td> 0</td><td> 1330</td>
<td> 786566</td><td> N/A</td><td> N/A</td><td> 7313</td><td> 7328</td><td> AATGCAACAT CCATCA</td><td> AksAksTksG<sub>ds</sub> C<sub>ds</sub>A<sub>d s</sub>A<sub>ds</sub><sup>m</sup>CdsAdsTds<sup>m</sup>Cds <sup>m</sup>CdsAdsTks<sup>m</sup>CkSA<sub>k</sub></td><td> 0</td><td> 1331</td>
<td> 786567</td><td> N/A</td><td> N/A</td><td> 7314</td><td> 7329</td><td> CAATGCAACA TCCATC</td><td><sup>m</sup>CksAksAksTdsGds<sup>m </sup>CdsAdsAds CdsAdsTd s Cds CdsAjis 1Ck</td><td> 0</td><td> 1323</td>
<td> 786568</td><td> N/A</td><td> N/A</td><td> 7315</td><td> 7330</td><td> CCAATGCAAC ATCCAT</td><td><sup>m</sup>Cks<sup>m</sup>CksAksA<sub>ds</sub>T<sub>ds </sub>G<sub>ds</sub><sup>m</sup>CdsAdsAds<sup>m</sup>Cds A<sub>ds</sub>T<sub>ds</sub><sup>m</sup>C<sub>ds</sub><sup>m</sup>Ck<sub>S</sub>A<sub>ks</sub>T k</td><td> 0</td><td> 1325</td>
<td> 786569</td><td> N/A</td><td> N/A</td><td> 7317</td><td> 7332</td><td> ACCCAATGCA ACATCC</td><td> Aks<sup>m</sup>Cks<sup>m</sup>Cks<sup>m</sup>C<sub>ds</sub>Ads AdsTdsGds CdsAdsAd s CdsAds 1 ks Cks Ck</td><td> 33</td><td> 1332</td>
<td> 786570</td><td> N/A</td><td> N/A</td><td> 7318</td><td> 7333</td><td> TACCCAATGC AACATC</td><td> י־/במ י־/1מ Λ יד 1 ksA<sub>ks</sub> Cks Cds Cds A<sub>ds</sub>A<sub>ds</sub>T<sub>ds</sub>G<sub>ds</sub><sup>m</sup>C<sub>ds</sub>A<sub>d </sub>sAds^^ksTks^k</td><td> 0</td><td> 1333</td>
<td> 786571</td><td> N/A</td><td> N/A</td><td> 7319</td><td> 7334</td><td> ATACCCAATG CAACAT</td><td> Ak<sub>S</sub>Tk<sub>S</sub>A<sub>ks</sub><sup>m</sup>Cds<sup>m</sup>Cds<sup>m </sup>CdsAdsAdsTdsGds<sup>m</sup>Cd sA<sub>ds</sub>A<sub>ds</sub> CksAksTk</td><td> 1</td><td> 1334</td>
Table 26
Inhibition of IRF5 mRNA by modified oligonucleotides targeting SEQ ID NO: 1 and 2
<td> Compound Number</td><td> SEQ ID NO: 1 Start Site</td><td> SEQ ID NO: 1 Stop Site</td><td> SEQ ID NO: 2 Start Site</td><td> SEQ ID NO: 2 Stop Site</td><td> Sequence (5' to 3')</td><td> Chemistry Notation</td><td> % Inhibition</td><td> SEQ ID NO</td>
<td> 665892</td><td> 1227</td><td> 1242</td><td> 10460</td><td> 10475</td><td> CACTGACA CAGGCGGA</td><td><sup>m</sup>CksAks<sup>m</sup>CkST<sub>ds</sub>G<sub>ds</sub>A <sub>ds</sub><sup>m</sup>CdsAds<sup>m</sup>CdsA<sub>ds</sub>G<sub>ds </sub>G<sub>ds</sub><sup>m</sup>C<sub>ds</sub>GksGksAk</td><td> 0</td><td> 387</td>
<td> 665893</td><td> 1228</td><td> 1243</td><td> 10461</td><td> 10476</td><td> GCACTGAC ACAGGCGG</td><td> ΟΛΑΛΤ<sub>4</sub>Ο <sub>ds</sub>A<sub>ds</sub><sup>m</sup>CdsAds<sup>m</sup>CdsA<sub>ds </sub>G<sub>ds</sub>G<sub>ds</sub><sup>m</sup>CksGksGk</td><td> 0</td><td> 39</td>
<td> 666168</td><td> N/A</td><td> N/A</td><td> 5286</td><td> 5301</td><td> ATCACCACT GTGTACC</td><td> A<sub>ks</sub>T<sub>ks</sub><sup>m</sup>CksAds<sup>m</sup>Cds<sup>m </sup>CdsAds<sup>m</sup>CdsT<sub>ds</sub>G<sub>ds</sub>T<sub>ds </sub>G<sub>ds</sub>T<sub>ds</sub>Aks<sup>m</sup>Cks<sup>m</sup>Ck</td><td> 11</td><td> 927</td>
<td> 728458</td><td> 392</td><td> 407</td><td> 4717</td><td> 4732</td><td> AGATGGTG TTATCTCC</td><td> AksGksAksT<sub>d</sub>sG<sub>d</sub>sG<sub>d</sub>s T<sub>ds</sub>G<sub>ds</sub>T<sub>ds</sub>T<sub>ds</sub>A<sub>ds</sub>T<sub>ds</sub><sup>m </sup>'-'ds 1 ks '-'ks '-'k</td><td> 0</td><td> 123</td>
<td> 728466</td><td> 427</td><td> 442</td><td> 8320</td><td> 8335</td><td> GGTGTATTT CCCTGTC</td><td> GksGksTksGdsTdsAds Τ Τ T mp mp m 1 ds 1 ds 1 ds '-'ds '-'ds יד י~^ יד י־/ '-'ds A ds'Jks A ks Me</td><td> 37</td><td> 1254</td>
<td> 728489</td><td> 484</td><td> 499</td><td> 8377</td><td> 8392</td><td> AAGGGCAC AGCGCAGG</td><td> AksAksGksG<sub>d</sub>sG<sub>d</sub>s C<sub>d s</sub>A<sub>ds</sub><sup>m</sup>CdsAdsGds<sup>m</sup>Cds G<sub>ds</sub><sup>n1</sup>C<sub>ds</sub>A<sub>ks</sub>GksGk</td><td> 2</td><td> 1249</td>
<td> 728670</td><td> 1230</td><td> 1245</td><td> 10463</td><td> 10478</td><td> TTGCACTGA CACAGGC</td><td> Tk<sub>S</sub>Tk<sub>S</sub>G<sub>ks</sub><sup>m</sup>CdsAds<sup>m</sup>C dsT<sub>ds</sub>G<sub>ds</sub>A<sub>ds</sub><sup>m</sup>CdsAds<sup>m </sup>CdsA<sub>ds</sub>GksGks<sup>m</sup>Ck</td><td> 0</td><td> 398</td>
<td> 728707</td><td> 1307</td><td> 1322</td><td> 10540</td><td> 10555</td><td> GCTTGGTCT TGACCTC</td><td> Gks<sup>m</sup>CksTksTdsGdsGds Tds<sup>m</sup>CdsT<sub>ds</sub>T<sub>ds</sub>G<sub>ds</sub>A<sub>d</sub>s mp mp ־׳p mp '-'ds '-'ks <sup>1</sup> ks '-'k</td><td> 0</td><td> 435</td>
<td> 728708</td><td> 1308</td><td> 1323</td><td> 10541</td><td> 10556</td><td> AGCTTGGTC TTGACCT</td><td> Ak<sub>S</sub>Gks<sup>m</sup>Ck<sub>S</sub>T<sub>ds</sub>T<sub>ds</sub>G<sub>ds</sub> 'r יד יד יד י~/ 'Jds A ds '-'ds A ds A ds'Jds Ads^ks^ksTk</td><td> 41</td><td> 436</td>
<td> 728958</td><td> 1979</td><td> 1994</td><td> 11544</td><td> 11559</td><td> CCTATACA GCTAGGCC</td><td><sup>m</sup>Cks<sup>m</sup>CksTksAdsTdsA mp a p mp ־׳p ds '-׳ds^'ds'-Jds '-'ds<sup>1</sup> ds AdsG<sub>ds</sub>Gks<sup>m</sup>Ck<sub>S</sub><sup>m</sup>Ck</td><td> 0</td><td> 168</td>
<td> 728996</td><td> 2114</td><td> 2129</td><td> 11679</td><td> 11694</td><td> GTGAGTCTC AAACCAG</td><td> GksTksGksA<sub>ds</sub>G<sub>d</sub>sT<sub>ds </sub><sup>m</sup>CdsTds<sup>m</sup>CdsA<sub>ds</sub>A<sub>ds</sub>A <sub>ds</sub><sup>m</sup>Cds<sup>m</sup>CksA<sub>ks</sub>Gk</td><td> 9</td><td> 206</td>
<td> 729037</td><td> 2216</td><td> 2231</td><td> 11781</td><td> 11796</td><td> GGTTCTTGG ACTCTCA</td><td> יד יד יד י~/ י~/ 'Jks'Jks 1 ks 1 ds '-'ds 1 ds T<sub>ds</sub>G<sub>ds</sub>G<sub>ds</sub>A<sub>ds</sub><sup>m</sup>CdsTds <sup>m</sup>CdsTks<sup>m</sup>CksAk</td><td> 47</td><td> 706</td>
<td> 785347</td><td> 390</td><td> 405</td><td> 4715</td><td> 4730</td><td> ATGGTGTTA TCTCCGT</td><td> AksT<sub>ds</sub>G<sub>ds</sub>G<sub>ds</sub>T<sub>ds</sub>G<sub>ds</sub> T<sub>ds</sub>T<sub>ds</sub>A<sub>ds</sub>T<sub>ds</sub><sup>m</sup>C<sub>ds</sub>Tks mp mp p יך Ves '-'ks'Jeslk</td><td> 0</td><td> 122</td>
<td> 785348</td><td> 392</td><td> 407</td><td> 4717</td><td> 4732</td><td> AGATGGTG TTATCTCC</td><td> Ak<sub>S</sub>G<sub>ds</sub>A<sub>d</sub>sT<sub>ds</sub>G<sub>ds</sub>G<sub>ds </sub>T<sub>ds</sub>G<sub>ds</sub>T<sub>ds</sub>T<sub>ds</sub>A<sub>d</sub>sTk<sub>S</sub><sup>m </sup>p יך mp mp '-'es^ks Ves '-'k</td><td> 0</td><td> 123</td>
<td> 785374</td><td> 2112</td><td> 2127</td><td> 11677</td><td> 11692</td><td> GAGTCTCA AACCAGGG</td><td> Gk<sub>S</sub>Ad<sub>S</sub>GdsTd<sub>S</sub><sup>m</sup>CdsTds <sup>m</sup>CdsAdSAdSAds<sup>m</sup>CdS<sup>m </sup>CksAesGksGesGk</td><td> 0</td><td> 205</td>
<td> 785375</td><td> 2114</td><td> 2129</td><td> 11679</td><td> 11694</td><td> GTGAGTCTC AAACCAG</td><td> GksTdsGdsAdsGdsTds <sup>m</sup>CdsTdS<sup>m</sup>CdSAd<sub>S</sub>A<sub>ds</sub>A a /~י ks '-'es '-ks^'es'-Jk</td><td> 0</td><td> 206</td>
<td> 785390</td><td> N/A</td><td> N/A</td><td> 5284</td><td> 5299</td><td> CACCACTGT GTACCCC</td><td><sup>m</sup>CkSAds<sup>m</sup>CdS<sup>m</sup>Cd<sub>S</sub>A<sub>ds</sub> י־/1מ t τ ri' τ Cdslds<Jdslds<Jdslds י־/1מ a -iVks '-'es Vks '-'es Vk</td><td> 0</td><td> 938</td>
<td> 785391</td><td> N/A</td><td> N/A</td><td> 5286</td><td> 5301</td><td> ATCACCACT GTGTACC</td><td> A<sub>ks</sub>Td<sub>S</sub><sup>m</sup>CdSAds<sup>m</sup>CdS<sup>m </sup>CdsAds<sup>m</sup>CdsTdsGdsTds GksTesAks^es^k</td><td> 0</td><td> 927</td>
<td> 785402</td><td> 390</td><td> 405</td><td> 4715</td><td> 4730</td><td> ATGGTGTTA TCTCCGT</td><td> AksTdsGdsGdsTdsGds TdsTdsAdsTds<sup>m</sup>CksT<sub>e</sub>s Vks '-eskJks 1 e</td><td> 0</td><td> 122</td>
<td> 785403</td><td> 392</td><td> 407</td><td> 4717</td><td> 4732</td><td> AGATGGTG TTATCTCC</td><td> AksGdsAdsTdsGdsGds Td<sub>S</sub>GdsTdsTdsAk<sub>S</sub>T<sub>es</sub><sup>m</sup> mp י־/1מ יך י־/ '-ks 1 es Vks Ve</td><td> 0</td><td> 123</td>
<td> 785429</td><td> 2112</td><td> 2127</td><td> 11677</td><td> 11692</td><td> GAGTCTCA AACCAGGG</td><td> Gk<sub>S</sub>Ad<sub>S</sub>GdsTd<sub>S</sub><sup>m</sup>CdsTds <sup>m</sup>CdsAdsAdsAds<sup>m</sup>Cks<sup>m </sup>CesAksGesGksGe</td><td> 6</td><td> 205</td>
<td> 785430</td><td> 2114</td><td> 2129</td><td> 11679</td><td> 11694</td><td> GTGAGTCTC AAACCAG</td><td> GksTdsGdsAdsGdsTds <sup>m</sup>CdsTds<sup>m</sup>CdsA<sub>d</sub>sAksA m<sub>r</sub> λ קוון es י—ks '-es^'kskJe</td><td> 0</td><td> 206</td>
<td> 785445</td><td> N/A</td><td> N/A</td><td> 5284</td><td> 5299</td><td> CACCACTGT GTACCCC</td><td> mp a mp mp a '-ks+^ds '-'ds '-ds+'ds י־/1מ t τ ri' τ '-'ds 1 dskJds 1 dskJds 1 ks י־/1מ י־/1מ י־/1מ a -iVes Vks Ves '-'ks '-'e</td><td> 0</td><td> 938</td>
<td> 785446</td><td> N/A</td><td> N/A</td><td> 5286</td><td> 5301</td><td> ATCACCACT GTGTACC</td><td> AksTds<sup>m</sup>CdsA<sub>d</sub>s<sup>m</sup>Cds<sup>m </sup>CdsAds<sup>m</sup>CdsTdsGdsTks GesTksAes<sup>m</sup>Cks<sup>m</sup>Ce</td><td> 0</td><td> 927</td>
<td> 785458</td><td> 392</td><td> 407</td><td> 4717</td><td> 4732</td><td> AGATGGTG TTATCTCC</td><td> AksGesAksTdsGdsGds TdsGdsTdsTdsAdsTds™ mp mp יך י־/ Ves A es '-'ks '-'k</td><td> 0</td><td> 123</td>
<td> 785473</td><td> 2114</td><td> 2129</td><td> 11679</td><td> 11694</td><td> GTGAGTCTC AAACCAG</td><td> GksTesGksAdsGdsTds” CdsTds<sup>m</sup>CdsAdsAdsAd a /~י s V-es '-es^'ks'-Jk</td><td> 22</td><td> 206</td>
<td> 785482</td><td> N/A</td><td> N/A</td><td> 5286</td><td> 5301</td><td> ATCACCACT GTGTACC</td><td> AksTes<sup>m</sup>CksA<sub>d</sub>s<sup>m</sup>Cds<sup>m</sup> CdsAds<sup>m</sup>CdsTdsGdsTds 0 T A kJds 1 es^es '-'ks '-'k</td><td> 0</td><td> 927</td>
<td> 785491</td><td> 391</td><td> 406</td><td> 4716</td><td> 4731</td><td> GATGGTGTT ATCTCCG</td><td> GksAksTdsGdsGdsTds GdsTdsTdsAdsTds<sup>m</sup>Cds <sup>1</sup>יך mp mp /~י 1 ks Ves '-'ks'Je</td><td> 0</td><td> 1335</td>
<td> 785492</td><td> 392</td><td> 407</td><td> 4717</td><td> 4732</td><td> AGATGGTG TTATCTCC</td><td> AksGksAdsTdsGdsGds TdsGdsTdsTdsAdsTds<sup>111</sup> mp mp יך י־/ '-'ks 1 es '-'ks '-'e</td><td> 0</td><td> 123</td>
<td> 785517</td><td> 2113</td><td> 2128</td><td> 11678</td><td> 11693</td><td> TGAGTCTCA AACCAGG</td><td> TksGksAdsGdsTds<sup>m</sup>Cds Tds<sup>m</sup>CdsAdsAdsA<sub>d</sub>s<sup>m</sup>C ds CksAesGksGe</td><td> 7</td><td> 1336</td>
<td> 785518</td><td> 2114</td><td> 2129</td><td> 11679</td><td> 11694</td><td> GTGAGTCTC AAACCAG</td><td> GksTksGdsAdsGdsTds <sup>m</sup>CdsTds<sup>m</sup>CdsAdsA<sub>d</sub>sA ds<sup>m</sup>Cks<sup>m</sup>CesAksGe</td><td> 31</td><td> 206</td>
<td> 785533</td><td> N/A</td><td> N/A</td><td> 5285</td><td> 5300</td><td> TCACCACTG TGTACCC</td><td> τ mp a mp mp 1 ks '-ksAds Cds '-'ds Ads<sup>m</sup>CdsTdsGd<sub>S</sub>Td<sub>S</sub>Gds Τ Δ <sup>m</sup>p <sup>m</sup>p mp 1 ds^ks Ves '-'ks '-׳e</td><td> 0</td><td> 939</td>
<td> 785534</td><td> N/A</td><td> N/A</td><td> 5286</td><td> 5301</td><td> ATCACCACT GTGTACC</td><td> A<sub>ks</sub>T<sub>ks</sub><sup>m</sup>CdsAds<sup>m</sup>C<sub>d</sub>s<sup>m </sup>CdsAds<sup>m</sup>CdsTdsGdsTds P Τ' A mp mp kJds 1 ks^es '-'ks '-'e</td><td> 0</td><td> 927</td>
<td> 785546</td><td> 391</td><td> 406</td><td> 4716</td><td> 4731</td><td> GATGGTGTT ATCTCCG</td><td> GlssAissTdsGdsGdsTds GdsTd<sub>s</sub>Td<sub>s</sub>Ad<sub>s</sub>T<sub>es</sub><sup>m</sup>Ces mp mp p יך<sup>,</sup> 1 es Ves '-'ks'Jk</td><td> 0</td><td> 1335</td>
<td> 785560</td><td> 2113</td><td> 2128</td><td> 11678</td><td> 11693</td><td> TGAGTCTCA AACCAGG</td><td> T<sub>ks</sub>G<sub>ks</sub>Ad<sub>S</sub>Gd<sub>S</sub>Td<sub>S</sub><sup>m</sup>Cds Tds<sup>m</sup>CdsAd<sub>S</sub>Ad<sub>S</sub>A<sub>es</sub><sup>m</sup>C es CcsAesGksGk</td><td> 0</td><td> 1336</td>
<td> 785569</td><td> N/A</td><td> N/A</td><td> 5285</td><td> 5300</td><td> TCACCACTG TGTACCC</td><td> τ mp a mp mp 1 ks *-ks^ds '-'ds '-'ds Ads<sup>m</sup>CdsTdsGdsTdsGes Τ A <sup>m</sup>p <sup>m</sup>p mp 1 es-^-es Ves '-'ks '-'k</td><td> 0</td><td> 939</td>
<td> 785578</td><td> 390</td><td> 405</td><td> 4715</td><td> 4730</td><td> ATGGTGTTA TCTCCGT</td><td> AjssTissGdsGdsTdsGds TdsTdsAdsTds<sup>m</sup>C<sub>ks</sub>T<sub>e</sub>s mp mp p τ '-'ks '-es'Jks 1 k</td><td> 0</td><td> 122</td>
<td> 785579</td><td> 391</td><td> 406</td><td> 4716</td><td> 4731</td><td> GATGGTGTT ATCTCCG</td><td> GlssAissTdsGdsGdsTds GdsTdsTdsAdsT<sub>ks</sub><sup>m</sup>Ces יך mp mp־. p. 1 ks '-'es י—kskJk</td><td> 0</td><td> 1335</td>
<td> 785580</td><td> 392</td><td> 407</td><td> 4717</td><td> 4732</td><td> AGATGGTG TTATCTCC</td><td> A<sub>ks</sub>G<sub>k</sub>sAdsTdsGdsGds TdsGdsTdsTdsA<sub>ks</sub>T<sub>e</sub>s<sup>m </sup>p. יך mp. mp. '-'ks A es '-'ks '-'k</td><td> 0</td><td> 123</td>
<td> 785615</td><td> 2112</td><td> 2127</td><td> 11677</td><td> 11692</td><td> GAGTCTCA AACCAGGG</td><td> G<sub>ks</sub>A<sub>ks</sub>GdsTds<sup>m</sup>CdsTds <sup>m</sup>CdsAdsAdsA<sub>d</sub>s<sup>m</sup>Cks<sup>m </sup>CcsAksGcsGksGk</td><td> 0</td><td> 205</td>
<td> 785616</td><td> 2113</td><td> 2128</td><td> 11678</td><td> 11693</td><td> TGAGTCTCA AACCAGG</td><td> T<sub>k</sub>sG<sub>ks</sub>AdsGdsTds<sup>m</sup>Cds Tds<sup>m</sup>CdsAdsAdsA<sub>k</sub>s<sup>m</sup>C es CksAesGksGk</td><td> 0</td><td> 1336</td>
<td> 785617</td><td> 2114</td><td> 2129</td><td> 11679</td><td> 11694</td><td> GTGAGTCTC AAACCAG</td><td> GjssTissGdsAdsGdsTds <sup>m</sup>CdsTds<sup>m</sup>CdsAdsAksA es<sup>m</sup>Cks<sup>m</sup>CesAksGk</td><td> 9</td><td> 206</td>
<td> 785637</td><td> N/A</td><td> N/A</td><td> 5284</td><td> 5299</td><td> CACCACTGT GTACCCC</td><td><sup>m</sup>CksAks<sup>m</sup>Cds<sup>m</sup>CdsAds mp τ p τ p τ '-'ds 1 dsvJds 1 dsvJds 1 ks A mp mp mp mp + *-es '-'ks '-'es '-'ks '-'k</td><td> 0</td><td> 938</td>
<td> 785638</td><td> N/A</td><td> N/A</td><td> 5285</td><td> 5300</td><td> TCACCACTG TGTACCC</td><td> τ mp a mp mp 1 ks '-'ksAds Cds '-'ds Ads<sup>m</sup>CdsTdsGdsTdsG<sub>ks</sub> T A 1 es^ks '-'es '-'ks '-'k</td><td> 0</td><td> 939</td>
<td> 785639</td><td> N/A</td><td> N/A</td><td> 5286</td><td> 5301</td><td> ATCACCACT GTGTACC</td><td> A<sub>ks</sub>T<sub>k</sub>s<sup>m</sup>CdsAds<sup>m</sup>Cds<sup>m </sup>CdsAds<sup>m</sup>CdsTdsGdsT<sub>ks </sub>GesTksAes^ks^k</td><td> 0</td><td> 927</td>
<td> 785655</td><td> 391</td><td> 406</td><td> 4716</td><td> 4731</td><td> GATGGTGTT ATCTCCG</td><td> GksAksTdsGdsGdsTds GdsTdsTdsAdsTds<sup>m</sup>Ces mp mp p יך<sup>,</sup> 1 es Ves '-'ks'Jk</td><td> 0</td><td> 1335</td>
<td> 785669</td><td> 2113</td><td> 2128</td><td> 11678</td><td> 11693</td><td> TGAGTCTCA AACCAGG</td><td> T<sub>ks</sub>G<sub>k</sub>sAdsGdsTds<sup>m</sup>Cds Tds<sup>m</sup>CdsAdsAdsA<sub>d</sub>s<sup>m</sup>C es CcsAesGksGk</td><td> 0</td><td> 1336</td>
<td> 785678</td><td> N/A</td><td> N/A</td><td> 5285</td><td> 5300</td><td> TCACCACTG TGTACCC</td><td> τ mp a mp mp 1 ks '-'ksAds Cds '-'ds Ads<sup>m</sup>CdsTdsGdsTdsGds T A <sup>m</sup>p <sup>m</sup>p mp 1 es^es V/es '-'ks '-'k</td><td> 0</td><td> 939</td>
<td> 785685</td><td> 391</td><td> 406</td><td> 4716</td><td> 4731</td><td> GATGGTGTT ATCTCCG</td><td> GksAksTdsGdsGdsTds G<sub>ds</sub>Td<sub>S</sub>Td<sub>S</sub>Ad<sub>S</sub>T<sub>ds</sub><sup>m</sup>Ck<sub>S</sub> 1 ds '-'ks V'ds'Jk</td><td> 0</td><td> 1335</td>
<td> 785699</td><td> 2113</td><td> 2128</td><td> 11678</td><td> 11693</td><td> TGAGTCTCA AACCAGG</td><td> TksGksAd<sub>S</sub>GdsTd<sub>S</sub><sup>m</sup>Cds TdS<sup>m</sup>CdsAdsAd<sub>S</sub>Ad<sub>S</sub><sup>m</sup>C ks CdsAksGdsGk</td><td> 0</td><td> 1336</td>
<td> 785708</td><td> N/A</td><td> N/A</td><td> 5285</td><td> 5300</td><td> TCACCACTG TGTACCC</td><td> 1 ks MsAds Ms Ms Ad<sub>S</sub><sup>m</sup>CdsTdsGdsTd<sub>S</sub>Gds י־/1מ τ A 1 ksAtfs Cks Ms M</td><td> 0</td><td> 939</td>
<td> 785716</td><td> 391</td><td> 406</td><td> 4716</td><td> 4731</td><td> GATGGTGTT ATCTCCG</td><td> GksAksTdsGdsGdsTds GdsTdsTdsAdsTds<sup>m</sup>Cks <sup>1</sup>יך mpv mpv p> 1 es Mes vesUk</td><td> 0</td><td> 1335</td>
<td> 785717</td><td> 392</td><td> 407</td><td> 4717</td><td> 4732</td><td> AGATGGTG TTATCTCC</td><td> AksGksAdsTdsGdsGds TdsGdsTdsTdsAdsTks<sup>111 </sup>p^ יך mpv mpv Ms Iks Ms Me</td><td> 0</td><td> 123</td>
<td> 785742</td><td> 2113</td><td> 2128</td><td> 11678</td><td> 11693</td><td> TGAGTCTCA AACCAGG</td><td> TksGksAdsGdsTds<sup>m</sup>Cds Tds<sup>m</sup>CdsAdsAdsA<sub>d</sub>s<sup>m</sup>C ks CesAksGesGk</td><td> 0</td><td> 1336</td>
<td> 785743</td><td> 2114</td><td> 2129</td><td> 11679</td><td> 11694</td><td> GTGAGTCTC AAACCAG</td><td> GksTksGdsAdsGdsTds <sup>m</sup>CdsTdS<sup>m</sup>CdsAdSA<sub>ds</sub>A mp mp^ a p> ks V^es Mes-^-esMe</td><td> 0</td><td> 206</td>
<td> 785758</td><td> N/A</td><td> N/A</td><td> 5285</td><td> 5300</td><td> TCACCACTG TGTACCC</td><td> 1 ks MsAds Ms Ms Ads<sup>m</sup>CdsTdsGdsTdsGds Τ A 1 ks^es '-'ks Ms '-'k</td><td> 0</td><td> 939</td>
<td> 785759</td><td> N/A</td><td> N/A</td><td> 5286</td><td> 5301</td><td> ATCACCACT GTGTACC</td><td> AksTks<sup>m</sup>CdsA<sub>d</sub>s<sup>m</sup>Cds<sup>m </sup>CdsAds<sup>m</sup>CdsTdsGdsTds GksTesAks<sup>m</sup>Ces<sup>m</sup>Ck</td><td> 0</td><td> 927</td>
<td> 785771</td><td> 392</td><td> 407</td><td> 4717</td><td> 4732</td><td> AGATGGTG TTATCTCC</td><td> AksGksAksTdsGdsGds TdsGdsTdsTdsAdsTks<sup>111 </sup>Ms Iks Ms M</td><td> 0</td><td> 123</td>
<td> 785786</td><td> 2114</td><td> 2129</td><td> 11679</td><td> 11694</td><td> GTGAGTCTC AAACCAG</td><td> GksTksGksAdsGdsTds <sup>m</sup>CdsTds<sup>m</sup>CdsAdsAdsA ks<sup>m</sup>Cds<sup>m</sup>CksAdsGk</td><td> 0</td><td> 206</td>
<td> 785795</td><td> N/A</td><td> N/A</td><td> 5286</td><td> 5301</td><td> ATCACCACT GTGTACC</td><td> AksTks<sup>m</sup>CksAds<sup>m</sup>Cds<sup>m </sup>CdsAds<sup>m</sup>CdsTdsGdsTds GksTdsAks<sup>m</sup>Cds<sup>m</sup>Ck</td><td> 0</td><td> 927</td>
<td> 785804</td><td> 391</td><td> 406</td><td> 4716</td><td> 4731</td><td> GATGGTGTT ATCTCCG</td><td> GksAksTksGdsGdsTds Gd<sub>S</sub>T <sub>ds</sub>T dsAdsT ds<sup>m</sup>Cks τ mp^ mp^ p> 1 es '-'ks ΜΑ</td><td> 0</td><td> 1335</td>
<td> 785805</td><td> 392</td><td> 407</td><td> 4717</td><td> 4732</td><td> AGATGGTG TTATCTCC</td><td> AksGksAksTdsGdsGds TdsGdsTdsTdsAdsTks<sup>111 </sup>p^ יך mp^ mp^ Ms Iks Ms '-'k</td><td> 0</td><td> 123</td>
<td> 785830</td><td> 2113</td><td> 2128</td><td> 11678</td><td> 11693</td><td> TGAGTCTCA AACCAGG</td><td> TksGksAksGdsTd<sub>S</sub><sup>m</sup>Cds Tds<sup>m</sup>CdsAdsAdsA<sub>d</sub>s<sup>m</sup>C ks CesAksGesGk</td><td> 0</td><td> 1336</td>
<td> 785831</td><td> 2114</td><td> 2129</td><td> 11679</td><td> 11694</td><td> GTGAGTCTC AAACCAG</td><td> GksTksGksAdsGdsTds <sup>m</sup>CdsTds<sup>m</sup>CdsAdSA<sub>ds</sub>A ks<sup>m</sup>Ces<sup>m</sup>CksAesGk</td><td> 0</td><td> 206</td>
<td> 785846</td><td> N/A</td><td> N/A</td><td> 5285</td><td> 5300</td><td> TCACCACTG TGTACCC</td><td> 1 ks MsAks Ms Ms Ads<sup>m</sup>CdsTdsGdsTdsGds Τ A 1 ksA^es '-/ks Ms '-'k</td><td> 0</td><td> 939</td>
<td> 785847</td><td> N/A</td><td> N/A</td><td> 5286</td><td> 5301</td><td> ATCACCACT GTGTACC</td><td> A<sub>ks</sub>T<sub>ks</sub><sup>m</sup>CksAds<sup>m</sup>Cds<sup>m </sup>CdsA<sub>ds</sub><sup>m</sup>C<sub>ds</sub>T<sub>ds</sub>G<sub>ds</sub>T<sub>ds </sub>GksTesAks^es^k</td><td> 0</td><td> 927</td>
<td> 785859</td><td> 392</td><td> 407</td><td> 4717</td><td> 4732</td><td> AGATGGTG TTATCTCC</td><td> AksGksAksTdsGdsGds TdsGdsTdsTdsAdsTds<sup>111 </sup>p τ mp mp '-'ks<sup>1</sup> es '-'ks *-׳e</td><td> 8</td><td> 123</td>
<td> 785874</td><td> 2114</td><td> 2129</td><td> 11679</td><td> 11694</td><td> GTGAGTCTC AAACCAG</td><td> GksTksGksAdsGdsTds <sup>m</sup>CdsTds<sup>m</sup>CdsA<sub>ds</sub>A<sub>ds</sub>A <sub>d</sub>s<sup>m</sup>Cks<sup>m</sup>CesAksG<sub>e</sub></td><td> 0</td><td> 206</td>
<td> 785883</td><td> N/A</td><td> N/A</td><td> 5286</td><td> 5301</td><td> ATCACCACT GTGTACC</td><td> A<sub>ks</sub>T<sub>ks</sub><sup>m</sup>CksAds<sup>m</sup>Cds<sup>m </sup>CdsAds<sup>m</sup>CdsT<sub>ds</sub>G<sub>ds</sub>T<sub>ds </sub>G<sub>ds</sub>T<sub>ks</sub>A<sub>es</sub><sup>m</sup>Ck<sub>s</sub><sup>m</sup>Ce</td><td> 0</td><td> 927</td>
<td> 785892</td><td> 391</td><td> 406</td><td> 4716</td><td> 4731</td><td> GATGGTGTT ATCTCCG</td><td> GksAksTksG<sub>ds</sub>G<sub>ds</sub>T<sub>ds </sub>G<sub>ds</sub>T<sub>ds</sub>T<sub>ds</sub>A<sub>d</sub>sT<sub>ds</sub><sup>m</sup>C<sub>ds</sub> T me m<x /~י 1 ks Cks CksCe</td><td> 0</td><td> 1335</td>
<td> 785893</td><td> 392</td><td> 407</td><td> 4717</td><td> 4732</td><td> AGATGGTG TTATCTCC</td><td> AksGksAksTdsGdsGds TdsGdsTdsTdsAdsTds<sup>111</sup> p τ mp mp Mes Iks '-'ks '-'e</td><td> 0</td><td> 123</td>
<td> 785918</td><td> 2113</td><td> 2128</td><td> 11678</td><td> 11693</td><td> TGAGTCTCA AACCAGG</td><td> TksGksAksGdsTds<sup>m</sup>Cds Tds<sup>m</sup>CdsAdsAdsA<sub>d</sub>s<sup>m</sup>C ds CksAksGksGe</td><td> 0</td><td> 1336</td>
<td> 785919</td><td> 2114</td><td> 2129</td><td> 11679</td><td> 11694</td><td> GTGAGTCTC AAACCAG</td><td> GksTksGksAdsGdsTds <sup>m</sup>CdsTds<sup>m</sup>CdsAdsA<sub>d</sub>sA mp mp a p ds '-'ks '-׳ks^'ks'-Je</td><td> 44</td><td> 206</td>
<td> 785934</td><td> N/A</td><td> N/A</td><td> 5285</td><td> 5300</td><td> TCACCACTG TGTACCC</td><td> τ mp a mp mp 1 ks '-'ks-^-ks '-'ds '-'ds Ads<sup>m</sup>CdsTdsGdsTdsGds τ Λ me m/־' m/1 dsAks Cks Cks Ce</td><td> 21</td><td> 939</td>
<td> 785935</td><td> N/A</td><td> N/A</td><td> 5286</td><td> 5301</td><td> ATCACCACT GTGTACC</td><td> AksTks<sup>m</sup>CksA<sub>d</sub>s<sup>m</sup>Cds<sup>m </sup>CdsAds<sup>m</sup>CdsTdsGdsTds GdsTksAks<sup>m</sup>Cks<sup>m</sup>Ce</td><td> 19</td><td> 927</td>
<td> 785938</td><td> N/A</td><td> N/A</td><td> 6548</td><td> 6563</td><td> CCAATTTTG CATTCCA</td><td><sup>m</sup>Cks<sup>m</sup>CksAksAdsTdsT dsTdsTdsGds<sup>m</sup>CdsAdsT dsTks<sup>m</sup>Cks<sup>m</sup>CksAe</td><td> 68</td><td> 1242</td>
<td> 786493</td><td> 393</td><td> 408</td><td> 4718</td><td> 4733</td><td> AAGATGGT GTTATCTC</td><td> AksAksGksAdsTdsGds GdsT dsGdsT dsT dsAds τ mp τ mp Ids '-׳kslks '-'k</td><td> 0</td><td> 1337</td>
<td> 786499</td><td> 2113</td><td> 2128</td><td> 11678</td><td> 11693</td><td> TGAGTCTCA AACCAGG</td><td> TksGksAksGdsTds<sup>m</sup>Cds Tds<sup>m</sup>CdsAdsAdsA<sub>d</sub>s<sup>m</sup>C ds CdsAksGksGk</td><td> 16</td><td> 1336</td>
<td> 786500</td><td> 2115</td><td> 2130</td><td> 11680</td><td> 11695</td><td> AGTGAGTC TCAAACCA</td><td> AksGksTksGdsAdsGds Tds<sup>m</sup>CdsTds<sup>m</sup>CdsAdsA dsAds<sup>m</sup>Cks<sup>m</sup>CksAk</td><td> 0</td><td> 1338</td>
Table 27
Inhibition of IRF5 mRNA by modified oligonucleotides targeting SEQ ID NO: 1 and 2
<td> Compound Number</td><td> SEQ ID NO: 1 Start Site</td><td> SEQ ID NO: 1 Stop Site</td><td> SEQ ID NO: 2 Start Site</td><td> SEQ ID NO: 2 Stop Site</td><td> Sequence (5' to 3')</td><td> Chemistry Notation</td><td> % Inhibition</td><td> SEQ ID NO</td>
<td> 728806</td><td> 1560</td><td> 1575</td><td> 11125</td><td> 11140</td><td> CGGTCTTTGA GGTCTG</td><td> CksvJksvJks 1 ds '-'ds 1 ds TdsTdsGdsAdsGdsGdsTa s '-'ks 1 kskJk</td><td> 32</td><td> 539</td>
<td> 729205</td><td> N/A</td><td> N/A</td><td> 5283</td><td> 5298</td><td> ACCACTGTGT ACCCCA</td><td> A<sub>ks</sub><sup>m</sup>Cks<sup>m</sup>CksA<sub>ds</sub><sup>m</sup>CdsT dsGdsTdsGdsTdsAds<sup>m</sup>Cd 111/י־ mr mr a s Cds '-'ks '-'ksAk</td><td> 75</td><td> 937</td>
<td> 729433</td><td> N/A</td><td> N/A</td><td> 4367</td><td> 4382</td><td> TTGTCTAGTGT CATGG</td><td> Tk<sub>S</sub>Tk<sub>S</sub>GksTds<sup>m</sup>CdsTd<sub>S</sub>A dsGdsTdsGdsTds<sup>m</sup>CdsAd sTksGksGk</td><td> 60</td><td> 974</td>
<td> 785368</td><td> 1558</td><td> 1573</td><td> 11123</td><td> 11138</td><td> GTCTTTGAGG TCTGGG</td><td> /~י τ m/<sup>5</sup>״ τ τ τ /~י kJks 1 ds '-'ds 1 ds 1 ds 1 dskJ dsAdsGdsGdsT ds<sup>m</sup>CksT <sub>es</sub> GksGesGk</td><td> 0</td><td> 537</td>
<td> 785369</td><td> 1560</td><td> 1575</td><td> 11125</td><td> 11140</td><td> CGGTCTTTGA GGTCTG</td><td> '-'ks'-<sup>r</sup>ds'-<sup>r</sup>ds A ds '-'ds A ds TdsTdsGdsAdsGdsGksTe י~/ יך<sup>1</sup> mp s '-'ks 1 eskJk</td><td> 68</td><td> 539</td>
<td> 785385</td><td> N/A</td><td> N/A</td><td> 4365</td><td> 4380</td><td> GTCTAGTGTC ATGGAA</td><td> GksTd<sub>S</sub><sup>m</sup>CdsTdsAdSGds TdSGdsTdS<sup>m</sup>CdsAdSTks GesGksAesAk</td><td> 42</td><td> 1339</td>
<td> 785386</td><td> N/A</td><td> N/A</td><td> 4367</td><td> 4382</td><td> TTGTCTAGTGT CATGG</td><td> TksTd<sub>S</sub>GdsTd<sub>S</sub><sup>m</sup>CdsTdSA dSGdsTdsGdsTds<sup>m</sup>CksA<sub>eS </sub>TksGesGk</td><td> 44</td><td> 974</td>
<td> 785389</td><td> N/A</td><td> N/A</td><td> 5283</td><td> 5298</td><td> ACCACTGTGT ACCCCA</td><td> A<sub>ks</sub><sup>m</sup>Cd<sub>S</sub><sup>m</sup>CdSAds<sup>m</sup>CdST dsGdsTdsGdsTdsAds<sup>m</sup>Ck mp mp mp a s Ves '-'ks '-'es-^-k</td><td> 43</td><td> 937</td>
<td> 785423</td><td> 1558</td><td> 1573</td><td> 11123</td><td> 11138</td><td> GTCTTTGAGG TCTGGG</td><td> /~י τ m/<sup>5</sup>״ τ τ τ kJks 1 ds '-'ds 1 ds 1 ds 1 dskJ dsAdsGdsGdsTks<sup>m</sup>CesTks GesGksGe</td><td> 33</td><td> 537</td>
<td> 785424</td><td> 1560</td><td> 1575</td><td> 11125</td><td> 11140</td><td> CGGTCTTTGA GGTCTG</td><td> '-'ks'-<sup>r</sup>ds'-<sup>r</sup>ds A ds '-'ds A ds TdsTdsGdsAdsGksGesTk י~/ '<sup>1</sup>Τ י־/111 s '-'eslks'Je</td><td> 40</td><td> 539</td>
<td> 785440</td><td> N/A</td><td> N/A</td><td> 4365</td><td> 4380</td><td> GTCTAGTGTC ATGGAA</td><td> GksTd<sub>S</sub><sup>m</sup>CdsTdsAdSGds TdsGdsTds<sup>m</sup>CdsAksTeS GksGesAksAe</td><td> 35</td><td> 1339</td>
<td> 785441</td><td> N/A</td><td> N/A</td><td> 4367</td><td> 4382</td><td> TTGTCTAGTGT CATGG</td><td> TksTd<sub>S</sub>GdsTd<sub>S</sub><sup>m</sup>CdsTdSA dsGdsTdsGdsTks<sup>m</sup>CesAks TesGksGe</td><td> 8</td><td> 974</td>
<td> 785444</td><td> N/A</td><td> N/A</td><td> 5283</td><td> 5298</td><td> ACCACTGTGT ACCCCA</td><td> A<sub>ks</sub><sup>m</sup>Cd<sub>S</sub><sup>m</sup>CdSAds<sup>m</sup>CdST dsGdsTdsGdsTdsAks<sup>m</sup>Ces a י־/111 mp י־/111 '-'ks '-'es '-'ks-^-e</td><td> 40</td><td> 937</td>
<td> 785470</td><td> 1560</td><td> 1575</td><td> 11125</td><td> 11140</td><td> CGGTCTTTGA GGTCTG</td><td> τ τ י~/ י~/ י־/111 '-'ks'Jes'Jks 1 ds '-'ds 1 ds TdsTdsGdsAdsGdsGdsTe י~/ יך<sup>1</sup> mp s Ves A kskJk</td><td> 49</td><td> 539</td>
<td> 785479</td><td> N/A</td><td> N/A</td><td> 4367</td><td> 4382</td><td> TTGTCTAGTGT CATGG</td><td> TksT<sub>es</sub>GksTd<sub>S</sub><sup>m</sup>CdsTdSA dsGdsTdsGdsTds<sup>m</sup>CdsAes TesGksGk</td><td> 55</td><td> 974</td>
<td> 785481</td><td> N/A</td><td> N/A</td><td> 5283</td><td> 5298</td><td> ACCACTGTGT ACCCCA</td><td> A<sub>ks</sub><sup>m</sup>CeS<sup>m</sup>CkSA<sub>ds</sub><sup>m</sup>C<sub>ds</sub>T dsGdsTdsGdsTdsAds<sup>m</sup>Cd mp mp mp a s Ves '-'es '-׳ks^'k</td><td> 63</td><td> 937</td>
<td> 785511</td><td> 1559</td><td> 1574</td><td> 11124</td><td> 11139</td><td> GGTCTTTGAG GTCTGG</td><td> p p τ mp τ τ τ 'Jks'Jks 1 ds '-'ds 1 ds 1 ds 1 dsGdsAd<sub>S</sub>GdsGdsTd<sub>S</sub><sup>m</sup>Ck sTesGksGe</td><td> 67</td><td> 538</td>
<td> 785512</td><td> 1560</td><td> 1575</td><td> 11125</td><td> 11140</td><td> CGGTCTTTGA GGTCTG</td><td> mp p p τ mp τ '-'ks'-<sup>r</sup>ks'-<sup>r</sup>ds A ds '-'ds A ds TdsTdsGdsAdsGdsGdsTk mp יך p s '-'eslks'Je</td><td> 43</td><td> 539</td>
<td> 785527</td><td> N/A</td><td> N/A</td><td> 4366</td><td> 4381</td><td> TGTCTAGTGTC ATGGA</td><td> TksGksTd<sub>S</sub><sup>m</sup>CdsTdSAdS GdsTdsGdsTdS<sup>m</sup>CdsAdS TksGesGksAe</td><td> 44</td><td> 1340</td>
<td> 785528</td><td> N/A</td><td> N/A</td><td> 4367</td><td> 4382</td><td> TTGTCTAGTGT CATGG</td><td> TksTksGdsTds<sup>m</sup>CdsTdsA dSGdsTdSGdSTds<sup>m</sup>CdSAk <sub>s</sub>T<sub>es</sub>GksGe</td><td> 38</td><td> 974</td>
<td> 785531</td><td> N/A</td><td> N/A</td><td> 5282</td><td> 5297</td><td> CCACTGTGTA CCCCAT</td><td> mp mp a mp τ P '-'ks '-'ksAtfs '-'ds 1 dsvJ dsTdsGdsTdsA<sub>ds</sub><sup>m</sup>Cds<sup>m</sup>C mp mp a τ ds '-'ks '-'es-^'-ks<sup>1</sup> e</td><td> 19</td><td> 936</td>
<td> 785532</td><td> N/A</td><td> N/A</td><td> 5283</td><td> 5298</td><td> ACCACTGTGT ACCCCA</td><td> A<sub>ks</sub><sup>m</sup>CkS<sup>m</sup>CdSA<sub>ds</sub><sup>m</sup>Cd<sub>S</sub>T dsGdsTdsGdsTdsAds<sup>m</sup>Cd mp mp mp a s V/ks '-'es '-'ks-^'e</td><td> 66</td><td> 937</td>
<td> 785557</td><td> 1559</td><td> 1574</td><td> 11124</td><td> 11139</td><td> GGTCTTTGAG GTCTGG</td><td> p p τ mp τ יד יד 'Jks'Jks A ds '-'ds 1 ds A ds A dsGdsAd<sub>s</sub>GdsGesTes<sup>m</sup>C<sub>e </sub>sTesGksGk</td><td> 56</td><td> 538</td>
<td> 785566</td><td> N/A</td><td> N/A</td><td> 4366</td><td> 4381</td><td> TGTCTAGTGTC ATGGA</td><td> TksGksTd<sub>S</sub><sup>m</sup>CdsTdSAdS GdsTdSGdsTdS<sup>m</sup>CesAesT esGesGksAk</td><td> 54</td><td> 1340</td>
<td> 785568</td><td> N/A</td><td> N/A</td><td> 5282</td><td> 5297</td><td> CCACTGTGTA CCCCAT</td><td> mp mp a mp τ P '-'ks '-'ksAds '-'ds 1 dsvJ d<sub>S</sub>T<sub>ds</sub>Gd<sub>S</sub>Td<sub>S</sub>A<sub>ds</sub><sup>m</sup>CeS<sup>m</sup>C eS<sup>m</sup>CeS<sup>m</sup>CesAksT<sub>k</sub></td><td> 44</td><td> 936</td>
<td> 785606</td><td> 1558</td><td> 1573</td><td> 11123</td><td> 11138</td><td> GTCTTTGAGG TCTGGG</td><td> p τ mp τ יד יד p vJks 1 ks '-'ds 1 ds 1 ds 1 dsvJ dsAdsGdsGdsTks<sup>m</sup>CesTks GesGksGk</td><td> 34</td><td> 537</td>
<td> 785607</td><td> 1559</td><td> 1574</td><td> 11124</td><td> 11139</td><td> GGTCTTTGAG GTCTGG</td><td> p p τ mp τ יד יד vJksvJks 1 ds '-'ds 1 ds 1 ds 1 d<sub>S</sub>GdsAd<sub>S</sub>GdsGksT<sub>es</sub><sup>m</sup>Ck <sub>s</sub>T<sub>es</sub>GksGk</td><td> 52</td><td> 538</td>
<td> 785608</td><td> 1560</td><td> 1575</td><td> 11125</td><td> 11140</td><td> CGGTCTTTGA GGTCTG</td><td> mp p p τ mp τ CksvJksvJds 1 ds '-'ds 1 ds TdsTdsGdsAdsGksGesTk mp יך p s Ves A ksvJk</td><td> 33</td><td> 539</td>
<td> 785629</td><td> N/A</td><td> N/A</td><td> 4365</td><td> 4380</td><td> GTCTAGTGTC ATGGAA</td><td> Gk<sub>S</sub>Tk<sub>S</sub><sup>m</sup>CdsTdsAdSGds TdsGdsTds<sup>m</sup>CdsAksTeS GksGesAksAk</td><td> 9</td><td> 1339</td>
<td> 785630</td><td> N/A</td><td> N/A</td><td> 4366</td><td> 4381</td><td> TGTCTAGTGTC ATGGA</td><td> TksGksTd<sub>S</sub><sup>m</sup>CdsTdSAdS GdSTdsGdsTds<sup>m</sup>CksAes TksGesGksAk</td><td> 10</td><td> 1340</td>
<td> 785631</td><td> N/A</td><td> N/A</td><td> 4367</td><td> 4382</td><td> TTGTCTAGTGT CATGG</td><td> TksTksGdsTds<sup>m</sup>CdsTdsA dsGdsTdsGdsTks<sup>m</sup>CesAks TesGksGk</td><td> 0</td><td> 974</td>
<td> 785635</td><td> N/A</td><td> N/A</td><td> 5282</td><td> 5297</td><td> CCACTGTGTA CCCCAT</td><td> י~/ יד י־/1מ mr mr λ Lzks LzksAtfs Lzds 1 dskJ dsT<sub>ds</sub>G<sub>ds</sub>T<sub>ds</sub>A<sub>ds</sub><sup>m</sup>Cks<sup>m</sup>C eS<sup>m</sup>Cks<sup>m</sup>CesAksT<sub>k</sub></td><td> 0</td><td> 936</td>
<td> 785636</td><td> N/A</td><td> N/A</td><td> 5283</td><td> 5298</td><td> ACCACTGTGT ACCCCA</td><td> A<sub>ks</sub><sup>m</sup>C<sub>ks</sub><sup>m</sup>CdsAds<sup>m</sup>CdsT <sub>ds</sub>G<sub>ds</sub>T<sub>ds</sub>G<sub>ds</sub>T<sub>ds</sub>A<sub>ks</sub><sup>m</sup>Ces me me me a '-'ks '-'es '^׳ks^k</td><td> 15</td><td> 937</td>
<td> 785666</td><td> 1559</td><td> 1574</td><td> 11124</td><td> 11139</td><td> GGTCTTTGAG GTCTGG</td><td> ידי ידי יד י־/1מ יד י~/ י~/ LJksvJks 1 ds Lzds 1 ds 1 ds 1 <sub>ds</sub>G<sub>ds</sub>A<sub>ds</sub>G<sub>ds</sub>G<sub>ds</sub>T<sub>es</sub><sup>m</sup>Ce sTesGksGk</td><td> 74</td><td> 538</td>
<td> 785675</td><td> N/A</td><td> N/A</td><td> 4366</td><td> 4381</td><td> TGTCTAGTGTC ATGGA</td><td> Τ^Ο^Τ^^^Τ^Α^ G<sub>ds</sub>T<sub>ds</sub>G<sub>ds</sub>T<sub>ds</sub><sup>m</sup>C<sub>ds</sub>A<sub>es </sub>T<sub>C</sub>sG<sub>C</sub>sGksAk</td><td> 60</td><td> 1340</td>
<td> 785677</td><td> N/A</td><td> N/A</td><td> 5282</td><td> 5297</td><td> CCACTGTGTA CCCCAT</td><td> me me a me יד L-ks Lzks-^-ds Lzds A dskJ <sub>ds</sub>T<sub>ds</sub>G<sub>ds</sub>T<sub>ds</sub>A<sub>ds</sub><sup>m</sup>Cds<sup>m</sup>C eS<sup>m</sup>CeS<sup>m</sup>CesA<sub>ks</sub>T<sub>k</sub></td><td> 64</td><td> 936</td>
<td> 785696</td><td> 1559</td><td> 1574</td><td> 11124</td><td> 11139</td><td> GGTCTTTGAG GTCTGG</td><td> יד יד יד י־/1מ יד י~/ י~/ LJksvJks 1 ds Lzds 1 ds 1 ds 1 <sub>ds</sub>G<sub>ds</sub>A<sub>ds</sub>G<sub>ds</sub>G<sub>ds</sub>T<sub>ks</sub><sup>m</sup>C<sub>d s</sub>Tk<sub>S</sub>G<sub>ds</sub>Gk</td><td> 56</td><td> 538</td>
<td> 785705</td><td> N/A</td><td> N/A</td><td> 4366</td><td> 4381</td><td> TGTCTAGTGTC ATGGA</td><td> Τ^Ο^Τ^^^Τ^Α^ G<sub>ds</sub>T<sub>ds</sub>G<sub>ds</sub>T<sub>ds</sub><sup>m</sup>C<sub>ds</sub>A<sub>ks </sub>T<sub>ds</sub>G<sub>ks</sub>G<sub>ds</sub>A<sub>k</sub></td><td> 40</td><td> 1340</td>
<td> 785707</td><td> N/A</td><td> N/A</td><td> 5282</td><td> 5297</td><td> CCACTGTGTA CCCCAT</td><td> יי׳/ יד י־/1מ me me λ Lzks LzksAds Lzds 1 dskJ <sub>ds</sub>T<sub>ds</sub>G<sub>ds</sub>T<sub>ds</sub>A<sub>ds</sub><sup>m</sup>C<sub>ds</sub><sup>m</sup>C me me a יך ks '-'ds '-'ks-^-ds<sup>1</sup> k</td><td> 54</td><td> 936</td>
<td> 785736</td><td> 1559</td><td> 1574</td><td> 11124</td><td> 11139</td><td> GGTCTTTGAG GTCTGG</td><td> יד יד יד יד י~/ י~/ kJkskJks A ds Lzds 1 ds A ds A <sub>ds</sub>G<sub>ds</sub>A<sub>ds</sub>G<sub>ds</sub>G<sub>ds</sub>T<sub>ks</sub><sup>m</sup>C<sub>e s</sub>Tk<sub>s</sub>G<sub>e</sub>sGk</td><td> 54</td><td> 538</td>
<td> 785737</td><td> 1560</td><td> 1575</td><td> 11125</td><td> 11140</td><td> CGGTCTTTGA GGTCTG</td><td> יד יד יי׳/ יי׳/ י>111 L-kskJkskJds A ds Lzds A ds TdsTdsGdsAdsGdsGksTe me <sup>1</sup>־p /~י s Vks A esvJk</td><td> 44</td><td> 539</td>
<td> 785752</td><td> N/A</td><td> N/A</td><td> 4366</td><td> 4381</td><td> TGTCTAGTGTC ATGGA</td><td> Τ^Ο^Τ^^^Τ^Α^ G<sub>d</sub>sT<sub>ds</sub>G<sub>ds</sub>T<sub>ds</sub><sup>m</sup>C<sub>ds</sub>A<sub>ks </sub>T<sub>C</sub>sGksG<sub>C</sub>sAk</td><td> 44</td><td> 1340</td>
<td> 785753</td><td> N/A</td><td> N/A</td><td> 4367</td><td> 4382</td><td> TTGTCTAGTGT CATGG</td><td> Τ^Τ^Ο^Τ^^^Τ^Α <sub>d</sub>sG<sub>d</sub>sT<sub>d</sub>sG<sub>d</sub>sT<sub>d</sub>s<sup>m</sup>CksAes TksGesGk</td><td> 24</td><td> 974</td>
<td> 785756</td><td> N/A</td><td> N/A</td><td> 5282</td><td> 5297</td><td> CCACTGTGTA CCCCAT</td><td> יי׳/ יד י־/1מ me me λ Lzks LzksAds Lzds 1 dskJ <sub>ds</sub>T<sub>ds</sub>G<sub>ds</sub>T<sub>ds</sub>A<sub>ds</sub><sup>m</sup>C<sub>ds</sub><sup>m</sup>C me me a יך ks '-'es '-'ks-^-es<sup>1</sup> k</td><td> 42</td><td> 936</td>
<td> 785757</td><td> N/A</td><td> N/A</td><td> 5283</td><td> 5298</td><td> ACCACTGTGT ACCCCA</td><td> A<sub>ks</sub><sup>m</sup>C<sub>ks</sub><sup>m</sup>CdsAds<sup>m</sup>CdsT <sub>ds</sub>G<sub>ds</sub>T<sub>ds</sub>G<sub>ds</sub>T<sub>ds</sub>A<sub>ds</sub><sup>m</sup>C<sub>k </sub>me me me a s V-es '-ks '-es^k</td><td> 17</td><td> 937</td>
<td> 785783</td><td> 1560</td><td> 1575</td><td> 11125</td><td> 11140</td><td> CGGTCTTTGA GGTCTG</td><td> יד יד יי׳/ יי׳/ י>111 L-kskJkskJks A ds Lzds A ds TdsTdsGdsAdsGdsGjssTd me יד s Lzks 1 dsvJk</td><td> 57</td><td> 539</td>
<td> 785792</td><td> N/A</td><td> N/A</td><td> 4367</td><td> 4382</td><td> TTGTCTAGTGT CATGG</td><td> Τ^Τ^Ο^Τ^^^Τ^Α (ΐδΟ^Τ^Ο^Τ^ΤίοΑ() sTksG<sub>ds</sub>Gk</td><td> 36</td><td> 974</td>
<td> 785794</td><td> N/A</td><td> N/A</td><td> 5283</td><td> 5298</td><td> ACCACTGTGT ACCCCA</td><td> A<sub>ks</sub><sup>m</sup>Cks<sup>m</sup>CksAds<sup>m</sup>CdsT <sub>ds</sub>G<sub>ds</sub>T<sub>ds</sub>G<sub>ds</sub>T<sub>ds</sub>A<sub>ds</sub><sup>m</sup>C<sub>k </sub>me me me λ s Cds Lzks LzdsAk</td><td> 40</td><td> 937</td>
<td> 785824</td><td> 1559</td><td> 1574</td><td> 11124</td><td> 11139</td><td> GGTCTTTGAG GTCTGG</td><td> /~י~/ י τ τ τ τ vJksvJks 1 ks '-'ds 1 ds 1 ds 1 dsGd<sub>s</sub>Ad<sub>s</sub>GdsGdsTks<sup>m</sup>C<sub>e </sub>sTksGesGk</td><td> 46</td><td> 538</td>
<td> 785825</td><td> 1560</td><td> 1575</td><td> 11125</td><td> 11140</td><td> CGGTCTTTGA GGTCTG</td><td> me /~י~/ י τ τ CksvJksvJks 1 ds '-'ds 1 ds TdsTdsGdsAdsGdsGksTe <sup>m</sup>e τ e s '-'ks<sup>1</sup> es'Jk</td><td> 56</td><td> 539</td>
<td> 785840</td><td> N/A</td><td> N/A</td><td> 4366</td><td> 4381</td><td> TGTCTAGTGTC ATGGA</td><td> Tk<sub>S</sub>GksTk<sub>S</sub><sup>m</sup>CdsTd<sub>S</sub>Ads Gd<sub>S</sub>TdsGdsTd<sub>S</sub><sup>m</sup>CdsAks TesGksGesAk</td><td> 57</td><td> 1340</td>
<td> 785841</td><td> N/A</td><td> N/A</td><td> 4367</td><td> 4382</td><td> TTGTCTAGTGT CATGG</td><td> TksTksGksTd<sub>s</sub><sup>m</sup>CdsTdsA dsGdsTdsGdsTds<sup>m</sup>CksAes TksGesGk</td><td> 16</td><td> 974</td>
<td> 785844</td><td> N/A</td><td> N/A</td><td> 5282</td><td> 5297</td><td> CCACTGTGTA CCCCAT</td><td> me me a me τ U Cks CksAks Cdslds^J dsTdsGdsTdsA<sub>ds</sub><sup>m</sup>Cds<sup>m</sup>C ks<sup>m</sup>Ces<sup>m</sup>CksAesT<sub>k</sub></td><td> 10</td><td> 936</td>
<td> 785845</td><td> N/A</td><td> N/A</td><td> 5283</td><td> 5298</td><td> ACCACTGTGT ACCCCA</td><td> A<sub>ks</sub><sup>m</sup>CkS<sup>m</sup>CkSA<sub>ds</sub><sup>m</sup>C<sub>ds</sub>T d<sub>S</sub>G<sub>ds</sub>Td<sub>S</sub>Gd<sub>S</sub>Td<sub>S</sub>A<sub>ds</sub><sup>m</sup>Ck me me me a s Ves '-'ks '-'esAk</td><td> 6</td><td> 937</td>
<td> 785871</td><td> 1560</td><td> 1575</td><td> 11125</td><td> 11140</td><td> CGGTCTTTGA GGTCTG</td><td> me /~י τ τ CksvJksvJks 1 ds '-'ds 1 ds TdsTdsGdsAdsGdsGdsTk <sup>m</sup>e τ e s '-׳esAks'-Je</td><td> 38</td><td> 539</td>
<td> 785880</td><td> N/A</td><td> N/A</td><td> 4367</td><td> 4382</td><td> TTGTCTAGTGT CATGG</td><td> Tk<sub>S</sub>Tk<sub>S</sub>GksTds<sup>m</sup>CdsTd<sub>S</sub>A dsGdsTdsGdsTds<sup>m</sup>CdsAk sTesGksGe</td><td> 39</td><td> 974</td>
<td> 785882</td><td> N/A</td><td> N/A</td><td> 5283</td><td> 5298</td><td> ACCACTGTGT ACCCCA</td><td> A<sub>ks</sub><sup>m</sup>CkS<sup>m</sup>CkSA<sub>ds</sub><sup>m</sup>Cd<sub>S</sub>T dsGdsTdsGdsTdsAds<sup>m</sup>Cd me me me a s '-'ks Ves Vks-Ae</td><td> 39</td><td> 937</td>
<td> 785912</td><td> 1559</td><td> 1574</td><td> 11124</td><td> 11139</td><td> GGTCTTTGAG GTCTGG</td><td> /~י~/ י T me τ τ τ 'Jks'Jks A ks '-'ds 1 ds A ds A dsGdsAd<sub>S</sub>GdsGdsTd<sub>S</sub><sup>m</sup>Ck sTksGksGe</td><td> 33</td><td> 538</td>
<td> 785913</td><td> 1560</td><td> 1575</td><td> 11125</td><td> 11140</td><td> CGGTCTTTGA GGTCTG</td><td> me /~י τ τ CksvJksvJks 1 ds '-'ds 1 ds TdsTdsGdsAdsGdsGdsTk י~/ p־<sup>1</sup> s '-'ks 1 ks^Je</td><td> 32</td><td> 539</td>
<td> 785928</td><td> N/A</td><td> N/A</td><td> 4366</td><td> 4381</td><td> TGTCTAGTGTC ATGGA</td><td> TksGksTks<sup>m</sup>CdsTdsAds GdsTdsGdsTds<sup>m</sup>CdsAds TksGksGksA<sub>e</sub></td><td> 39</td><td> 1340</td>
<td> 785929</td><td> N/A</td><td> N/A</td><td> 4367</td><td> 4382</td><td> TTGTCTAGTGT CATGG</td><td> TksTksGksTds<sup>m</sup>CdsTdsA dsGdsTdsGdsTds<sup>m</sup>CdsAk sTksGksGe</td><td> 20</td><td> 974</td>
<td> 785932</td><td> N/A</td><td> N/A</td><td> 5282</td><td> 5297</td><td> CCACTGTGTA CCCCAT</td><td> '-'ks '-'ksAks Cds 1 dsvJ dsTdsGdsTdsA<sub>d</sub>s<sup>m</sup>Cds<sup>m</sup>C ds<sup>m</sup>Cks<sup>m</sup>CksAksTe</td><td> 57</td><td> 936</td>
<td> 785933</td><td> N/A</td><td> N/A</td><td> 5283</td><td> 5298</td><td> ACCACTGTGT ACCCCA</td><td> Aks<sup>m</sup>Cks<sup>m</sup>CksAds<sup>m</sup>CdsT dsGdsTdsGdsTdsAds<sup>m</sup>Cd a s '-'ks '-'ks '-'ks-^-e</td><td> 47</td><td> 937</td>
<td> 785938</td><td> N/A</td><td> N/A</td><td> 6548</td><td> 6563</td><td> CCAATTTTGC ATTCCA</td><td><sup>m</sup>Cks<sup>m</sup>CksAksAdsTdsTds TdsTdsGds<sup>m</sup>CdsAdsTdST ks<sup>m</sup>Cks<sup>m</sup>CksA<sub>e</sub></td><td> 75</td><td> 1242</td>
<td> 786572</td><td> N/A</td><td> N/A</td><td> 4358</td><td> 4373</td><td> GTCATGGAAT TTTGTG</td><td> GksTks<sup>m</sup>CksAdsTdsGds GdsAdsAdsTdsTdsTdsTd sGksTksGk</td><td> 54</td><td> 1341</td>
<td> 786573</td><td> N/A</td><td> N/A</td><td> 4360</td><td> 4375</td><td> GTGTCATGGA ATTTTG</td><td> Gk<sub>S</sub>Tk<sub>S</sub>GksTd<sub>S</sub><sup>m</sup>CdsAds Td<sub>S</sub>GdsGdsAd<sub>S</sub>Ad<sub>S</sub>Td<sub>S</sub>Td sTksTk<sub>S</sub>Gk</td><td> 58</td><td> 1342</td>
<td> 786574</td><td> N/A</td><td> N/A</td><td> 4362</td><td> 4377</td><td> TAGTGTCATG GAATTT</td><td> Tk<sub>S</sub>Ak<sub>S</sub>GksTd<sub>S</sub>Gd<sub>S</sub>Tds<sup>m </sup>CdsAdsTdsGdsGdsAdsA dsTksTksTk</td><td> 38</td><td> 1343</td>
<td> 786575</td><td> N/A</td><td> N/A</td><td> 4363</td><td> 4378</td><td> CTAGTGTCAT GGAATT</td><td> ™CksTksAksGdsTdsGds Tds<sup>m</sup>Cd<sub>S</sub>Ad<sub>S</sub>Td<sub>S</sub>GdsGds AdsAksTksH</td><td> 34</td><td> 1344</td>
<td> 786576</td><td> N/A</td><td> N/A</td><td> 4364</td><td> 4379</td><td> TCTAGTGTCAT GGAAT</td><td> Tks<sup>m</sup>CksTksAd<sub>S</sub>GdsTd<sub>S </sub>GdsTds<sup>m</sup>CdsAdsTdsGds GdsAksAksTk</td><td> 14</td><td> 1345</td>
<td> 786577</td><td> N/A</td><td> N/A</td><td> 4365</td><td> 4380</td><td> GTCTAGTGTC ATGGAA</td><td> GksTk<sub>S</sub><sup>m</sup>CksTdSAdSGds TdsGdsTdS<sup>m</sup>CdsAdSTd<sub>S </sub>GdsGksAksAk</td><td> 38</td><td> 1339</td>
<td> 786578</td><td> N/A</td><td> N/A</td><td> 4366</td><td> 4381</td><td> TGTCTAGTGTC ATGGA</td><td> Tk<sub>S</sub>GksTk<sub>S</sub><sup>m</sup>CdsTd<sub>S</sub>Ads Gd<sub>S</sub>TdsGdsTd<sub>S</sub><sup>m</sup>CdsAds T dsGksGks Ak</td><td> 61</td><td> 1340</td>
<td> 786579</td><td> N/A</td><td> N/A</td><td> 4368</td><td> 4383</td><td> CTTGTCTAGTG TCATG</td><td> m/~1 τ τ /~י τ 111/^ '-'ks 1 ks 1 kskJds 1 ds '-'ds Td<sub>s</sub>Ad<sub>s</sub>GdsTd<sub>s</sub>GdsTds<sup>m </sup>C<sub>ds</sub>A<sub>ks</sub>T<sub>ks</sub>G<sub>k</sub></td><td> 58</td><td> 1346</td>
<td> 786580</td><td> N/A</td><td> N/A</td><td> 4369</td><td> 4384</td><td> TCTTGTCTAGT GTCAT</td><td> τ m/<sup>5</sup>״ τ τ /~י τ m 1 ks '-'ks 1 ks 1 dskJds 1 ds CdsTd<sub>S</sub>Ad<sub>S</sub>GdsTd<sub>S</sub>GdsTd <sub>s</sub><sup>m</sup>Ck<sub>S</sub>AksTk</td><td> 0</td><td> 1347</td>
<td> 786581</td><td> N/A</td><td> N/A</td><td> 4370</td><td> 4385</td><td> TTCTTGTCTAG TGTCA</td><td> יד 'r יד יד יד τ 1 ks A ks '-'ks A ds A ds'Jds A ds<sup>m</sup>CdsTdSAdSGdSTdsGd sTks<sup>m</sup>CksA<sub>k</sub></td><td> 49</td><td> 1348</td>
<td> 786582</td><td> N/A</td><td> N/A</td><td> 4371</td><td> 4386</td><td> TTTCTTGTCTA GTGTC</td><td> יד יד יד יד יד 1 ks A ks A ks '-'ds A ds A ds'J d<sub>S</sub>Td<sub>S</sub><sup>m</sup>CdsTd<sub>S</sub>Ad<sub>S</sub>GdsTds ^/111 T י~/ kJks 1 ks '-'k</td><td> 53</td><td> 1349</td>
<td> 786583</td><td> N/A</td><td> N/A</td><td> 4372</td><td> 4387</td><td> CTTTCTTGTCT AGTGT</td><td> m/~1 τ τ τ 111/^ τ '-'ks 1 ks 1 ks 1 ds '-'ds 1 ds TdsGdsTd<sub>S</sub><sup>m</sup>CdsTd<sub>S</sub>Ad<sub>S </sub>GdsTksGksTk</td><td> 48</td><td> 1350</td>
<td> 786584</td><td> N/A</td><td> N/A</td><td> 4374</td><td> 4389</td><td> AGCTTTCTTGT CTAGT</td><td> m יד יד יד ^/111 י~/ λ A<sub>ks</sub>Uks '-'ks 1 ds 1 ds 1 ds יד יד י~/ יד יד Cds 1 ds 1 ds<Jds 1 ds Cdsl d<sub>S</sub>Ak<sub>S</sub>Gk<sub>S</sub>Tk</td><td> 20</td><td> 1351</td>
<td> 786585</td><td> N/A</td><td> N/A</td><td> 4376</td><td> 4391</td><td> TCAGCTTTCTT GTCTA</td><td> Tks<sup>m</sup>CksAksGds<sup>m</sup>CdsTds יד י~/ יד יד יד τ Idslds Cds 1 ds 1 ds<Jds 1 ds<sup>m</sup>CksTksAk</td><td> 15</td><td> 1352</td>
<td> 786586</td><td> N/A</td><td> N/A</td><td> 4378</td><td> 4393</td><td> CATCAGCTTTC TTGTC</td><td><sup>m</sup>CksAksTks<sup>m</sup>CdsAdsGds m/~1 τ τ τ 111/^ τ '-'ds 1 ds 1 ds 1 ds '-'ds 1 ds יד י~/ יד 1 dskJks 1 ks '-'k</td><td> 28</td><td> 1353</td>
Example 3: Dose-dependent inhibition of human IRF5 by cEt gapmers
Modified oligonucleotides described in the studies above exhibiting significant in vitro inhibition of 5 IRF5 RNA were selected and tested at various doses in THP-1 cells, as well as in KARPAS-229 cells. Hie modified oligonucleotides were tested in a series of experiments that had similar culture conditions. Hie results for each experiment are presented in separate tables shown below.
Assay in THP-l cells
Cultured THP-l cells at a density of 30,000 cells per well were transfected using electroporation with modified oligonucleotides diluted to different concentrations as specified in the Tables below. After a treatment period of approximately 24 hours, IRF5 RNA levels were measured as previously described using the human 5 IRF5 primer-probe set HTS4167. IRF5 RNA levels were adjusted according to total RNA content, as measured by RIBOGREEN®. Results are presented in the tables below as percent inhibition of IRF5, relative to untreated control cells. The half maximal inhibitory concentration (IC50) of each modified oligonucleotide is also presented. IC50 was calculated using a linear regression on a log/linear plot of the data in excel.
Table 28
Multi-dose assay of modified oligonucleotides in THP-l cells
<td rowspan="2"> Compound No.</td><td colspan="4"> /«Inhibition</td><td rowspan="2"> IC50 (pM)</td>
<td> 185.19 nM</td><td> 555.56 nM</td><td> 1666.67 nM</td><td> 5000.00 nM</td>
<td> 665795</td><td> 36</td><td> 57</td><td> 76</td><td> 85</td><td> 0.4</td>
<td> 665892</td><td> 40</td><td> 59</td><td> 74</td><td> 82</td><td> 0.3</td>
<td> 665893</td><td> 26</td><td> 53</td><td> 74</td><td> 83</td><td> 0.6</td>
<td> 665908</td><td> 19</td><td> 45</td><td> 57</td><td> 73</td><td> 1.1</td>
<td> 665933</td><td> 30</td><td> 38</td><td> 66</td><td> 79</td><td> 0.8</td>
<td> 728408</td><td> 19</td><td> 32</td><td> 55</td><td> 82</td><td> 1.1</td>
<td> 728458</td><td> 29</td><td> 45</td><td> 58</td><td> 80</td><td> 0.8</td>
<td> 728498</td><td> 24</td><td> 31</td><td> 61</td><td> 81</td><td> 1.0</td>
<td> 728670</td><td> 58</td><td> 51</td><td> 70</td><td> 79</td><td> 0.1</td>
<td> 728673</td><td> 25</td><td> 32</td><td> 51</td><td> 84</td><td> 1.1</td>
<td> 728695</td><td> 23</td><td> 54</td><td> 72</td><td> 80</td><td> 0.6</td>
<td> 728696</td><td> 38</td><td> 62</td><td> 73</td><td> 89</td><td> 0.3</td>
<td> 728705</td><td> 39</td><td> 57</td><td> 71</td><td> 82</td><td> 0.4</td>
<td> 728706</td><td> 35</td><td> 55</td><td> 72</td><td> 92</td><td> 0.4</td>
<td> 728707</td><td> 50</td><td> 64</td><td> 74</td><td> 85</td><td> 0.2</td>
<td> 728708</td><td> 53</td><td> 69</td><td> 86</td><td> 88</td><td> 0.1</td>
<td> 728806</td><td> 33</td><td> 47</td><td> 74</td><td> 87</td><td> 0.5</td>
Table 29
Multi-dose assay of modified oligonucleotides in THP-l cells
<td rowspan="2"> Compound No.</td><td colspan="4"> /«Inhibition</td><td rowspan="2"> IC50 (pM)</td>
<td> 185.19 nM</td><td> 555.5556 nM</td><td> 185.19 nM</td><td> 5000.0 nM</td>
<td> 665893</td><td> 25</td><td> 50</td><td> 64</td><td> 81</td><td> 0.7</td>
<td> 665933</td><td> 18</td><td> 30</td><td> 67</td><td> 69</td><td> 1.2</td>
<td> 728739</td><td> 14</td><td> 26</td><td> 55</td><td> 58</td><td> 2.2</td>
<td> 728741</td><td> 13</td><td> 35</td><td> 65</td><td> 82</td><td> 1.0</td>
<td> 728759</td><td> 40</td><td> 49</td><td> 49</td><td> 68</td><td> 0.8</td>
<td> 728778</td><td> 10</td><td> 32</td><td> 46</td><td> 79</td><td> 1.5</td>
<td> 728793</td><td> 10</td><td> 21</td><td> 39</td><td> 68</td><td> 2.4</td>
<td> 728800</td><td> 23</td><td> 39</td><td> 62</td><td> 68</td><td> 1.1</td>
<td> 728802</td><td> 20</td><td> 35</td><td> 34</td><td> 65</td><td> 2.5</td>
<td> 728887</td><td> 8</td><td> 34</td><td> 60</td><td> 72</td><td> 1.4</td>
<td> 728891</td><td> 43</td><td> 23</td><td> 50</td><td> 74</td><td> 1.2</td>
<td> 728893</td><td> 9</td><td> 28</td><td> 45</td><td> 74</td><td> 1.7</td>
<td> 728894</td><td> 20</td><td> 42</td><td> 68</td><td> 85</td><td> 0.8</td>
<td> 728898</td><td> 16</td><td> 41</td><td> 69</td><td> 86</td><td> 0.8</td>
<td> 728899</td><td> 10</td><td> 34</td><td> 65</td><td> 79</td><td> 1.1</td>
<td> 728905</td><td> 21</td><td> 31</td><td> 57</td><td> 77</td><td> 1.2</td>
<td> 728944</td><td> 15</td><td> 21</td><td> 71</td><td> 79</td><td> 1.1</td>
<td> 728954</td><td> 7</td><td> 21</td><td> 60</td><td> 82</td><td> 1.3</td>
<td> 728970</td><td> 30</td><td> 50</td><td> 78</td><td> 85</td><td> 0.5</td>
Table 30
Multi-dose assay of modified oligonucleotides in THP-1 cells
<td rowspan="2"> Compound No.</td><td colspan="4"> /«Inhibition</td><td rowspan="2"> IC50 (hM)</td>
<td> 185.19 nM</td><td> 555.56 nM</td><td> 1666.67 nM</td><td> 5000.00 nM</td>
<td> 665893</td><td> 38</td><td> 59</td><td> 72</td><td> 83</td><td> 0.4</td>
<td> 665933</td><td> 13</td><td> 39</td><td> 52</td><td> 71</td><td> 1.4</td>
<td> 666168</td><td> 29</td><td> 30</td><td> 60</td><td> 82</td><td> 0.9</td>
<td> 728958</td><td> 30</td><td> 43</td><td> 68</td><td> 83</td><td> 0.7</td>
<td> 728969</td><td> 30</td><td> 55</td><td> 81</td><td> 89</td><td> 0.5</td>
<td> 728996</td><td> 36</td><td> 57</td><td> 73</td><td> 84</td><td> 0.4</td>
<td> 728998</td><td> 27</td><td> 56</td><td> 73</td><td> 85</td><td> 0.5</td>
<td></td><td> 0</td><td> H</td><td> 0</td><td> 85</td><td></td>
<td> 729037</td><td> 58</td><td> 64</td><td> 86</td><td> 94</td><td> 0.1</td>
<td> 729038</td><td> 41</td><td> 65</td><td> 89</td><td> 92</td><td> 0.3</td>
<td> 729039</td><td> 40</td><td> 50</td><td> 77</td><td> 90</td><td> 0.39</td>
<td> 729049</td><td> 35</td><td> 57</td><td> 76</td><td> 85</td><td> 0.4</td>
<td> 729050</td><td> 21</td><td> 52</td><td> 75</td><td> 90</td><td> 0.6</td>
<td> 729205</td><td> 23</td><td> 42</td><td> 73</td><td> 84</td><td> 0.7</td>
<td> 729206</td><td> 11</td><td> 40</td><td> 54</td><td> 73</td><td> 1.3</td>
<td> 729433</td><td> 25</td><td> 41</td><td> 65</td><td> 86</td><td> 0.8</td>
<td> 729453</td><td> 16</td><td> 43</td><td> 61</td><td> 80</td><td> 1.0</td>
<td> 729454</td><td> 31</td><td> 40</td><td> 69</td><td> 87</td><td> 0.7</td>
<td> 729456</td><td> 11</td><td> 38</td><td> 63</td><td> 80</td><td> 1.1</td>
Table 31
Multi-dose assay of modified oligonucleotides in THP-1 cells
<td rowspan="2"> Compound No.</td><td colspan="4"> /«Inhibition</td><td rowspan="2"> IC50 (μΜ)</td>
<td> 185.19 nM</td><td> 555.56 nM</td><td> 1666.67 nM</td><td> 5000.00 nM</td>
<td> 665893</td><td> 24</td><td> 53</td><td> 74</td><td> 86</td><td> 0.6</td>
<td> 665933</td><td> 13</td><td> 36</td><td> 58</td><td> 71</td><td> 1.3</td>
<td> 666178</td><td> 29</td><td> 46</td><td> 65</td><td> 82</td><td> 0.7</td>
<td> 666208</td><td> 0</td><td> 24</td><td> 50</td><td> 73</td><td> 1.8</td>
<td> 729201</td><td> 18</td><td> 35</td><td> 49</td><td> 73</td><td> 1.4</td>
<td> 729207</td><td> 12</td><td> 34</td><td> 60</td><td> 84</td><td> 1.1</td>
<td> 729213</td><td> 19</td><td> 47</td><td> 70</td><td> 85</td><td> 0.7</td>
<td> 729221</td><td> 5</td><td> 31</td><td> 53</td><td> 73</td><td> 1.5</td>
<td> 729243</td><td> 5</td><td> 34</td><td> 54</td><td> 77</td><td> 1.4</td>
<td> 729447</td><td> 0</td><td> 0</td><td> 10</td><td> 53</td><td> >5.0</td>
<td> 729460</td><td> 18</td><td> 31</td><td> 63</td><td> 81</td><td> 1.1</td>
<td> 729475</td><td> 22</td><td> 39</td><td> 57</td><td> 80</td><td> 1.0</td>
<td> 729476</td><td> 42</td><td> 63</td><td> 85</td><td> 91</td><td> 0.3</td>
<td> 729494</td><td> 27</td><td> 42</td><td> 67</td><td> 80</td><td> 0.8</td>
<td> 729495</td><td> 16</td><td> 57</td><td> 74</td><td> 86</td><td> 0.6</td>
<td> 729497</td><td> 0</td><td> 35</td><td> 48</td><td> 72</td><td> 1.7</td>
<td> 729513</td><td> 18</td><td> 41</td><td> 67</td><td> 89</td><td> 0.8</td>
<td> 729589</td><td> 14</td><td> 47</td><td> 70</td><td> 85</td><td> 0.8</td>
<td> 729659</td><td> 3</td><td> 32</td><td> 60</td><td> 85</td><td> 1.2</td>
Assay in KARPAS-229 cells
Cultured KARPAS-229 cells at a density of 10,000 cells per well were treated using free uptake with modified oligonucleotides diluted to different concentrations as specified in the Tables below. After a treatment period of approximately 24 hours, IRF5 mRNA levels were measured as previously described using the Human IRF5 primer-probe set RTS4524. IRF5 mRNA levels were adjusted according to total RNA content, as 10 measured by RIBOGREEN®. Results are presented in the tables below as percent inhibition of IRF5, relative to untreated control cells.
The half maximal inhibitory concentration (IC50) of each modified oligonucleotide is also presented. IC50 was calculated using a linear regression on a log/linear plot of the data in excel. ‘N.D.’ indicates that the % inhibition is not defined forthat dosage with the modified oligonucleotide.
Table 32
Multi-dose assay of modified oligonucleotides in KARPAS-229 cells
<td rowspan="2"> Compound No.</td><td colspan="4"> /«Inhibition</td><td rowspan="2"> IC50 (μΜ)</td>
<td> 444.44 nM</td><td> 1333.33 nM</td><td> 4000.00 nM</td><td> 12000.00 nM</td>
<td> 728466</td><td> 32</td><td> 38</td><td> 56</td><td> 69</td><td> 2.6</td>
<td> 729037</td><td> 52</td><td> 65</td><td> 79</td><td> 86</td><td> 0.3</td>
<td> 729476</td><td> 38</td><td> 66</td><td> 78</td><td> 83</td><td> 0.7</td>
<td> 785350</td><td> 23</td><td> 40</td><td> 62</td><td> 87</td><td> 2.0</td>
<td> 785475</td><td> 31</td><td> 44</td><td> 66</td><td> 81</td><td> 1.6</td>
<td> 785477</td><td> 34</td><td> 48</td><td> 62</td><td> 74</td><td> 1.6</td>
<td> 785478</td><td> 53</td><td> 69</td><td> 80</td><td> 86</td><td> 0.3</td>
<td> 785485</td><td> 42</td><td> 68</td><td> 78</td><td> 82</td><td> 0.5</td>
<td> 785502</td><td> 38</td><td> 47</td><td> 69</td><td> 78</td><td> 1.2</td>
<td> 785522</td><td> 39</td><td> 59</td><td> 73</td><td> 84</td><td> 0.8</td>
<td> 785537</td><td> 47</td><td> 66</td><td> 75</td><td> 82</td><td> 0.4</td>
<td> 785563</td><td> 25</td><td> 51</td><td> 64</td><td> 77</td><td> 1.8</td>
<td> 785583</td><td> 15</td><td> 32</td><td> 66</td><td> 76</td><td> 2.7</td>
<td> 785661</td><td> 22</td><td> 32</td><td> 41</td><td> 58</td><td> 7.0</td>
<td> 785672</td><td> 46</td><td> 64</td><td> 73</td><td> 84</td><td> 0.5</td>
<td> 785791</td><td> 42</td><td> 62</td><td> 67</td><td> 79</td><td> 0.7</td>
<td> 785876</td><td> 41</td><td> 56</td><td> 67</td><td> 81</td><td> 0.9</td>
<td> 785938</td><td> 61</td><td> 79</td><td> 84</td><td> 88</td><td> 0.1</td>
<td> 786507</td><td> 51</td><td> 74</td><td> 83</td><td> 89</td><td> 0.3</td>
Table 33
Multi-dose assay of modified oligonucleotides in KARPAS-229 cells
<td rowspan="2"> Compound No.</td><td colspan="4"> /«Inhibition</td><td rowspan="2"> IC50 (μΜ)</td>
<td> 444.44 nM</td><td> 1333.33 nM</td><td> 4000.00 nM</td><td> 12000.00 nM</td>
<td></td><td> H</td><td> B</td><td> ϋ</td><td> 1</td><td> 0J</td>
<td> 729049</td><td> 51</td><td> 66</td><td> 77</td><td> 84</td><td> 0.3</td>
<td> 729454</td><td> 12</td><td> 41</td><td> 58</td><td> 70</td><td> 3.0</td>
<td> 729495</td><td> 44</td><td> 60</td><td> 74</td><td> 86</td><td> 0.7</td>
<td> 785519</td><td> 6</td><td> 12</td><td> 49</td><td> 65</td><td> 5.5</td>
<td> 785525</td><td> 40</td><td> 53</td><td> 71</td><td> 79</td><td> 1.0</td>
<td> 785674</td><td> 57</td><td> 71</td><td> 77</td><td> 83</td><td> 0.1</td>
<td> 785764</td><td> 29</td><td> ND</td><td> 61</td><td> 81</td><td> 1.8</td>
<td> 785920</td><td> 21</td><td> 13</td><td> 71</td><td> 76</td><td> 2.9</td>
<td> 785926</td><td> 46</td><td> 52</td><td> 67</td><td> 74</td><td> 0.8</td>
<td> 785938</td><td> 54</td><td> 75</td><td> 87</td><td> 91</td><td> 0.2</td>
<td> 786501</td><td> 27</td><td> 39</td><td> 68</td><td> 79</td><td> 1.9</td>
<td> 786503</td><td> 42</td><td> 45</td><td> 76</td><td> 77</td><td> 1.0</td>
<td> 786524</td><td> 50</td><td> 54</td><td> 73</td><td> 81</td><td> 0.6</td>
<td> 786538</td><td> 60</td><td> 49</td><td> 74</td><td> 77</td><td> 0.3</td>
<td> 786548</td><td> 15</td><td> 46</td><td> 52</td><td> 70</td><td> 3.0</td>
<td> 786590</td><td> 9</td><td> 39</td><td> 70</td><td> 81</td><td> 2.3</td>
<td> 786591</td><td> 38</td><td> 44</td><td> 66</td><td> 78</td><td> 1.4</td>
<td> 786597</td><td> 32</td><td> 59</td><td> 70</td><td> 81</td><td> 1.1</td>
Table 34
Multi-dose assay of modified oligonucleotides in KARPAS-229 cells
<td rowspan="2"> Compound No.</td><td colspan="4"> /«Inhibition</td><td rowspan="2"> IC50 (μΜ)</td>
<td> 444.44 nM</td><td> 1333.33 nM</td><td> 4000.00 nM</td><td> 12000.00 nM</td>
<td> 728466</td><td> 25</td><td> 56</td><td> 50</td><td> 67</td><td> 2.4</td>
<td> 728708</td><td> 33</td><td> 41</td><td> 46</td><td> 55</td><td> 6.1</td>
<td> 729037</td><td> 54</td><td> 72</td><td> 75</td><td> 82</td><td> 0.2</td>
<td> 729205</td><td> 16</td><td> 41</td><td> 57</td><td> 65</td><td> 3.3</td>
<td> 729433</td><td> 37</td><td> N.D.</td><td> 70</td><td> 84</td><td> 1.1</td>
<td> 729494</td><td> 41</td><td> 66</td><td> 67</td><td> 78</td><td> 0.7</td>
<td> 785369</td><td> 31</td><td> 29</td><td> 46</td><td> 57</td><td> 6.5</td>
<td> 785481</td><td> 28</td><td> 45</td><td> 62</td><td> 77</td><td> 1.9</td>
<td> 785511</td><td> 39</td><td> 43</td><td> 63</td><td> 72</td><td> 1.6</td>
<td> 785532</td><td> 26</td><td> 38</td><td> 56</td><td> 70</td><td> 2.7</td>
<td> 785539</td><td> 37</td><td> 45</td><td> 62</td><td> 73</td><td> 1.6</td>
<td> 785666</td><td> 22</td><td> 58</td><td> 69</td><td> 79</td><td> 1.5</td>
<td> 785675</td><td> 33</td><td> 50</td><td> 57</td><td> 70</td><td> 1.9</td>
<td> 785677</td><td> 14</td><td> 39</td><td> 55</td><td> 71</td><td> 3.1</td>
<td> 785919</td><td> 23</td><td> 39</td><td> 50</td><td> 59</td><td> 4.4</td>
<td> 785938</td><td> 62</td><td> 82</td><td> 87</td><td> 88</td><td> <0.4</td>
<td> 785940</td><td> 31</td><td> 44</td><td> 70</td><td> 78</td><td> 1.6</td>
<td> 785941</td><td> 33</td><td> 56</td><td> 61</td><td> 75</td><td> 1.3</td>
<td> 786578</td><td> 0</td><td> 42</td><td> 65</td><td> 74</td><td> 3.3</td>
Example 4: Tolerability of modified oligonucleotides targeting human IRF5 in CD-I mice
CD-I mice are a multipurpose mouse model frequently utilized for safety and efficacy testing. The mice were treated with modified oligonucleotides selected from studies described above and evaluated for changes in the levels of various plasma chemistry markers.
Study 1
Treatment
Groups of 6- to 8-week-old male CD-1 mice were injected subcutaneously once a week for seven weeks (for a total of 7 treatments) with 50 mg/kg of modified oligonucleotides. One group of male CD-I mice was injected with PBS. Mice were euthanized 48 hours following the final administration.
Plasma chemistry markers
To evaluate the effect of modified oligonucleotides on liver function, plasma levels of blood urea nitrogen (BUN), albumin, alanine aminotransferase (ALT), aspartate aminotransferase (AST), and total 5 bilirubin (TBIL) were measured using an automated clinical chemistry analyzer (Hitachi Olympus AU400c, Melville, NY). Hie results are presented in the Table below. Modified oligonucleotides that caused changes in the levels of any of the liver or kidney function markers outside the expected range for modified oligonucleotides were excluded in further studies.
Table 35
Plasma chemistry markers in male CD-I mice
<td> Compound No.</td><td> BUN (mg/dL)</td><td> Albumin (g/dL)</td><td> AST (IU/L)</td><td> ALT (IU/L)</td><td> TBIL (mg/dL)</td>
<td> PBS</td><td> 25</td><td> 3.5</td><td> 57</td><td> 45</td><td> 0.2</td>
<td> 665795</td><td> 27</td><td> 3.2</td><td> 237</td><td> 541</td><td> 0.3</td>
<td> 665892</td><td> 35</td><td> 3.3</td><td> 212</td><td> 245</td><td> 0.2</td>
<td> 665893</td><td> 25</td><td> 3.5</td><td> 210</td><td> 290</td><td> 0.2</td>
<td> 665908</td><td> 29</td><td> 4.1</td><td> 4665</td><td> 6042</td><td> 0.5</td>
<td> 665933</td><td> 31</td><td> 3.8</td><td> 767</td><td> 1353</td><td> 0.3</td>
<td> 666168</td><td> 26</td><td> 3.4</td><td> 3931</td><td> 3855</td><td> 0.7</td>
<td> 666178</td><td> 30</td><td> 2.9</td><td> 16490</td><td> 14669</td><td> 6.4</td>
<td> 728458</td><td> 32</td><td> 3.7</td><td> 821</td><td> 1311</td><td> 0.2</td>
<td> 728706</td><td> 28</td><td> 3.7</td><td> 2893</td><td> 3673</td><td> 0.8</td>
<td> 728708</td><td> 24</td><td> 3.9</td><td> 1770</td><td> 3270</td><td> 0.2</td>
<td> 728759</td><td> 22</td><td> 3.7</td><td> 860</td><td> 599</td><td> 0.2</td>
<td> 728806</td><td> 38</td><td> 3.8</td><td> 2503</td><td> 2422</td><td> 0.4</td>
<td> 728958</td><td> 23</td><td> 3.0</td><td> 214</td><td> 158</td><td> 0.2</td>
<td> 728969</td><td> 22</td><td> 3.5</td><td> 70</td><td> 59</td><td> 0.2</td>
<td> 728970</td><td> 20</td><td> 3.6</td><td> 157</td><td> 140</td><td> 0.2</td>
<td> 728998</td><td> 24</td><td> 3.5</td><td> 583</td><td> 865</td><td> 0.2</td>
<td> 729018</td><td></td><td> 3,2</td><td> B</td><td> B</td><td></td>
<td> 729049</td><td> 21</td><td> 3.7</td><td> 425</td><td> 771</td><td> 0.2</td>
<td> 729050</td><td> 22</td><td> 3.5</td><td> 193</td><td> 246</td><td> 0.2</td>
<td> 729213</td><td> 25</td><td> 3.1</td><td> 344</td><td> 411</td><td> 0.2</td>
<td> 729433</td><td> 26</td><td> 3.7</td><td> 802</td><td> 791</td><td> 0.2</td>
<td> 729454</td><td> 25</td><td> 3.6</td><td> 3958</td><td> 4541</td><td> 0.5</td>
<td> 729476</td><td> 77</td><td> 2.7</td><td> 1660</td><td> 2046</td><td> 0.7</td>
<td> 729494</td><td> 20</td><td> 3.2</td><td> 157</td><td> 149</td><td> 0.2</td>
<td> 729495</td><td> 57</td><td> 3.2</td><td> 240</td><td> 254</td><td> 0.1</td>
<td> 729513</td><td> 23</td><td> 4.8</td><td> 1558</td><td> 2743</td><td> 0.4</td>
Body and organ weights
Body weights of CD-I mice were measured at days 1 and 44, and the average body weight for each group is presented in the Table below. Heart, kidney, spleen, liver and thymus weights were measured at the 5 end of the study and are presented in the Table below. Modified oligonucleotides that caused any changes in organ weights outside the expected range for modified oligonucleotides were excluded from further studies.
Table 36
Body and organ weights (in grams)
<td rowspan="2"> Compound No.</td><td colspan="2"> Body Weight (g)</td><td rowspan="2"> Heart (g)</td><td rowspan="2"> Kidney (g)</td><td rowspan="2"> Spleen (g)</td><td rowspan="2"> Liver (g)</td><td rowspan="2"> Thymus (g)</td>
<td> Day 1</td><td> Day 44</td>
<td> PBS</td><td> 34</td><td> 37</td><td> 0.2</td><td> 0.7</td><td> 0.1</td><td> 2.2</td><td> 0.05</td>
<td> 665795</td><td> 34</td><td> 40</td><td> 0.2</td><td> 0.7</td><td> 0.2</td><td> 2.6</td><td> 0.03</td>
<td> 665892</td><td> 34</td><td> 38</td><td> 0.2</td><td> 0.8</td><td> 0.2</td><td> 2.9</td><td> 0.02</td>
<td> 665893</td><td> 34</td><td> 39</td><td> 0.2</td><td> 0.8</td><td> 0.2</td><td> 2.6</td><td> 0.02</td>
<td> 665908</td><td> 34</td><td> 35</td><td> 0.2</td><td> 0.6</td><td> 0.2</td><td> 3.5</td><td> 0.02</td>
<td> 665933</td><td> 34</td><td> 39</td><td> 0.2</td><td> 0.7</td><td> 0.1</td><td> 3.1</td><td> 0.02</td>
<td> 666168</td><td> 34</td><td> 31</td><td> 0.2</td><td> 0.4</td><td> 0.2</td><td> 2.3</td><td> 0.01</td>
<td> 666178</td><td> 33</td><td> 28</td><td> 0.1</td><td> 0.6</td><td> 0.1</td><td> 1.8</td><td> 0.02</td>
<td> 728458</td><td> 34</td><td> 37</td><td> 0.2</td><td> 0.8</td><td> 0.2</td><td> 3.3</td><td> 0.05</td>
<td> 728706</td><td> 34</td><td> 31</td><td> 0.2</td><td> 0.6</td><td> 0.1</td><td> 2.3</td><td> 0.01</td>
<td> 728708</td><td> 33</td><td> 36</td><td> 0.2</td><td> 0.7</td><td> 0.2</td><td> 3.0</td><td> 0.03</td>
<td> 728759</td><td> 33</td><td> 39</td><td> 0.2</td><td> 0.7</td><td> 0.1</td><td> 3.5</td><td> 0.04</td>
<td> 728806</td><td> 33</td><td> 33</td><td> 0.1</td><td> 0.6</td><td> 0.1</td><td> 3.0</td><td> 0.02</td>
<td> 728958</td><td> 34</td><td> 39</td><td> 0.2</td><td> 0.8</td><td> 0.2</td><td> 2.8</td><td> 0.03</td>
<td> 728969</td><td> 34</td><td> 38</td><td> 0.2</td><td> 0.6</td><td> 0.1</td><td> 2.2</td><td> 0.05</td>
<td> 728970</td><td> 32</td><td> 37</td><td> 0.2</td><td> 0.6</td><td> 0.1</td><td> 2.3</td><td> 0.04</td>
<td> 728998</td><td> 34</td><td> 41</td><td> 0.2</td><td> 0.7</td><td> 0.2</td><td> 3.2</td><td> 0.05</td>
<td> 729018</td><td> II</td><td> II</td><td> il</td><td> 0.7</td><td> 11</td><td> il</td><td> 0.04</td>
<td> 729049</td><td> 34</td><td> 36</td><td> 0.2</td><td> 0.6</td><td> 0.2</td><td> 2.6</td><td> 0.02</td>
<td> 729050</td><td> 34</td><td> 36</td><td> 0.2</td><td> 0.6</td><td> 0.1</td><td> 2.4</td><td> 0.04</td>
<td> 729213</td><td> 33</td><td> 35</td><td> 0.2</td><td> 0.7</td><td> 0.1</td><td> 2.0</td><td> 0.01</td>
<td> 729433</td><td> 32</td><td> 32</td><td> 0.1</td><td> 0.6</td><td> 0.1</td><td> 2.7</td><td> 0.02</td>
<td> 729454</td><td> 32</td><td> 36</td><td> 0.2</td><td> 0.6</td><td> 0.1</td><td> 3.2</td><td> 0.02</td>
<td> 729476</td><td> 33</td><td> 32</td><td> 0.2</td><td> 0.5</td><td> 0.1</td><td> 2.2</td><td> 0.04</td>
<td> 729494</td><td> 33</td><td> 40</td><td> 0.2</td><td> 0.7</td><td> 0.2</td><td> 2.5</td><td> 0.02</td>
<td> 729495</td><td> 32</td><td> 26</td><td> 0.1</td><td> 0.5</td><td> 0.04</td><td> 1.4</td><td> 0.01</td>
<td> 729513</td><td> 33</td><td> 30</td><td> 0.2</td><td> 0.5</td><td> 0.1</td><td> 2.8</td><td> 0.01</td>
Study 2
Treatment
Groups of 6- to 7-week-old male CD-I mice (obtained from Charles River) were injected subcutaneously once a week for four weeks (for a total of 5 treatments) with 50 mg/kg of modified oligonucleotides. One group of male CD-I mice was injected with PBS. Mice were euthanized 48 hours 5 following the final administration.
Plasma chemistry markers
To evaluate the effect of modified oligonucleotides on liver function, plasma levels of blood urea nitrogen (BUN), albumin, alanine aminotransferase (ALT), aspartate aminotransferase (AST), and total 10 bilirubin (TBIL) were measured using an automated clinical chemistry analyzer (Hitachi Olympus AU400c, Melville, NY). Hie results are presented in the Table below. Modified oligonucleotides that caused changes in the levels of any of the liver or kidney function markers outside the expected range for modified oligonucleotides were excluded in further studies.
Table 37
Plasma chemistry markers in male CD-I mice
<td> Compound No.</td><td> BUN (mg/dL)</td><td> Albumin (g/dL)</td><td> AST (IU/L)</td><td> ALT (IU/L)</td><td> TBIL (mg/dL)</td>
<td> PBS</td><td> 19</td><td> 2.6</td><td> 91</td><td> 132</td><td> 0.3</td>
<td> 785478</td><td> 19</td><td> 2.6</td><td> 175</td><td> 228</td><td> 0.2</td>
<td> 785502</td><td> 23</td><td> 2.5</td><td> 479</td><td> 639</td><td> 0.5</td>
<td> 785525</td><td> 19</td><td> 2.4</td><td> 197</td><td> 265</td><td> 0.2</td>
<td> 785532</td><td> 15</td><td> 2.2</td><td> 471</td><td> 591</td><td> 0.3</td>
<td> 785537</td><td> 17</td><td> 2.6</td><td> 420</td><td> 335</td><td> 0.3</td>
<td> 785539</td><td> 17</td><td> 2.4</td><td> 143</td><td> 145</td><td> 0.2</td>
<td> 785674</td><td> 18</td><td> 2.8</td><td> 118</td><td> 101</td><td> 0.2</td>
<td> 785675</td><td> 19</td><td> 2.7</td><td> 85</td><td> 62</td><td> 0.2</td>
<td> 785677</td><td> 18</td><td> 2.9</td><td> 311</td><td> 526</td><td> 0.2</td>
<td> 785920</td><td> 20</td><td> 3.0</td><td> 875</td><td> 1356</td><td> 0.3</td>
<td> 785926</td><td> 24</td><td> 3.3</td><td> 197</td><td> 232</td><td> 0.2</td>
<td> 785940</td><td> 19</td><td> 2.4</td><td> 1201</td><td> 754</td><td> 0.2</td>
<td> 786524</td><td> 18</td><td> 2.8</td><td> 175</td><td> 208</td><td> 0.2</td>
<td> 786538</td><td> 18</td><td> 2.9</td><td> 569</td><td> 1514</td><td> 0.2</td>
Body and organ weights
Body weights of CD-I mice were measured at days 1 and 28, and the average body weight for each group is presented in the Table below. Kidney, spleen, and liver weights were measured at the end of the study and are presented in the Table below. Modified oligonucleotides that caused any changes in organ weights outside the expected range for modified oligonucleotides were excluded from further studies.
Table 38
Body and organ weights (in grams)
<td rowspan="2"> Compound No.</td><td colspan="2"> Body Weight (g)</td><td rowspan="2"> Kidney (g)</td><td rowspan="2"> Spleen (g)</td><td rowspan="2"> Liver (g)</td>
<td> Day 1</td><td> Day 28</td>
<td> PBS</td><td> 29</td><td> 38</td><td> 0.6</td><td> 0.1</td><td> 1.9</td>
<td> 785478</td><td> 30</td><td> 39</td><td> 0.7</td><td> 0.2</td><td> 2.3</td>
<td> 785502</td><td> 29</td><td> 35</td><td> 0.6</td><td> 0.2</td><td> 1.6</td>
<td> 785525</td><td> 29</td><td> 37</td><td> 0.6</td><td> 0.2</td><td> 2.2</td>
<td> 785532</td><td> 28</td><td> 33</td><td> 0.6</td><td> 0.4</td><td> 2.7</td>
<td> 785537</td><td> 30</td><td> 36</td><td> 0.6</td><td> 0.2</td><td> 2.0</td>
<td> 785539</td><td> 30</td><td> 41</td><td> 0.6</td><td> 0.2</td><td> 2.4</td>
<td> 785674</td><td> 30</td><td> 40</td><td> 0.8</td><td> 0.2</td><td> 2.3</td>
<td> 785675</td><td> 30</td><td> 39</td><td> 0.7</td><td> 0.2</td><td> 2.5</td>
<td> 785677</td><td> 28</td><td> 37</td><td> 0.6</td><td> 0.3</td><td> 2.2</td>
<td> 785920</td><td> 29</td><td> 39</td><td> 0.7</td><td> 0.4</td><td> 3.4</td>
<td> 785926</td><td> 29</td><td> 36</td><td> 0.6</td><td> 0.2</td><td> 1.8</td>
<td> 785940</td><td> 29</td><td> 30</td><td> 0.6</td><td> 0.1</td><td> 1.8</td>
<td> 786524</td><td> 30</td><td> 39</td><td> 0.6</td><td> 0.2</td><td> 2.4</td>
<td> 786538</td><td> 30</td><td> 38</td><td> 0.6</td><td> 0.2</td><td> 3.3</td>
Study 3
Treatment
Groups of 6- to 7-week-old male CD-I mice (obtained from Charles River) were injected subcutaneously once a week for six weeks (for a total of 7 treatments) with 50 mg/kg of modified oligonucleotides. One group of male CD-I mice was injected with PBS. Mice were euthanized 48 hours following the final administration.
Plasma chemistry markers
To evaluate the effect of modified oligonucleotides on liver function, plasma levels of blood urea nitrogen (BUN), albumin, alanine aminotransferase (ALT), aspartate aminotransferase (AST), and total bilirubin (TBIL) were measured using an automated clinical chemistry analyzer (Hitachi Olympus AU400c, Melville, NY). The results are presented in the Table below. Modified oligonucleotides that caused changes in the levels of any of the liver or kidney function markers outside the expected range for modified oligonucleotides were excluded in further studies.
Table 39
Plasma chemistry markers in male CD-I mice
<td> Compound No.</td><td> BUN (mg/dL)</td><td> Albumin (g/dL)</td><td> AST (IU/L)</td><td> ALT (IU/L)</td><td> TBIL (mg/dL)</td>
<td> PBS</td><td> 25</td><td> 2.5</td><td> 69</td><td> 60</td><td> 0.2</td>
<td> 729049</td><td> 22</td><td> 2.7</td><td> 214</td><td> 322</td><td> 0.2</td>
<td> 785478</td><td> 20</td><td> 2.5</td><td> 166</td><td> 237</td><td> 0.1</td>
<td> 785525</td><td> 21</td><td> 2.6</td><td> 172</td><td> 134</td><td> 0.2</td>
<td> 785539</td><td> 18</td><td> 2.6</td><td> 96</td><td> 64</td><td> 0.2</td>
<td> 785674</td><td> 22</td><td> 2.4</td><td> 129</td><td> 83</td><td> 0.1</td>
<td> 785675</td><td> 23</td><td> 2.4</td><td> 98</td><td> 100</td><td> 0.1</td>
<td> 785764</td><td> 19</td><td> 2.5</td><td> 89</td><td> 49</td><td> 0.2</td>
<td> 786503</td><td> 20</td><td> 2.4</td><td> 74</td><td> 47</td><td> 0.1</td>
<td> 786524</td><td> 20</td><td> 2.6</td><td> 136</td><td> 145</td><td> 0.1</td>
<td> 786548</td><td> 22</td><td> 2.3</td><td> 132</td><td> 125</td><td> 0.1</td>
<td> 786597</td><td> 21</td><td> 2.4</td><td> 127</td><td> 69</td><td> 0.2</td>
Body and organ weights
Body weights of CD-I mice were measured at days 1 and 43, and the average body weight for each group is presented in the Table below. Kidney, spleen, and liver weights were measured at the end of the study and are presented in the Table below. Modified oligonucleotides that caused any changes in organ weights outside the expected range for modified oligonucleotides were excluded from further studies.
Table 40
Body and organ weights (in grams)
<td rowspan="2"> Compound No.</td><td colspan="2"> Body Weight (g)</td><td rowspan="2"> Kidney (g)</td><td rowspan="2"> Spleen (g)</td><td rowspan="2"> Liver (g)</td>
<td> Day 1</td><td> Day 43</td>
<td> PBS</td><td> 28</td><td> 41</td><td> 0.7</td><td> 0.1</td><td> 2.1</td>
<td> 729049</td><td> 30</td><td> 39</td><td> 0.7</td><td> 0.2</td><td> 2.2</td>
<td> 785478</td><td> 29</td><td> 39</td><td> 0.7</td><td> 0.2</td><td> 2.4</td>
<td> 785525</td><td> 28</td><td> 39</td><td> 0.7</td><td> 0.3</td><td> 2.2</td>
<td> 785539</td><td> 28</td><td> 45</td><td> 0.7</td><td> 0.2</td><td> 2.6</td>
<td> 785674</td><td> 28</td><td> 37</td><td> 0.6</td><td> 0.3</td><td> 2.1</td>
<td> 785675</td><td> 29</td><td> 41</td><td> 0.7</td><td> 0.2</td><td> 2.7</td>
<td> 785764</td><td> 28</td><td> 43</td><td> 0.7</td><td> 0.3</td><td> 2.5</td>
<td> 786503</td><td> 29</td><td> 41</td><td> 0.7</td><td> 0.2</td><td> 2.4</td>
<td> 786524</td><td> 29</td><td> 41</td><td> 0.6</td><td> 0.2</td><td> 2.5</td>
<td> 786548</td><td> 27</td><td> 41</td><td> 0.6</td><td> 0.2</td><td> 2.4</td>
<td> 786597</td><td> 30</td><td> 41</td><td> 0.6</td><td> 0.2</td><td> 2.5</td>
Study 4
CD-I mice were treated with modified oligonucleotides selected from studies described above and evaluated for changes in the levels of various plasma chemistry markers.
Treatment
Groups of 6-week-old male CD-I mice (obtained from Charles River) were injected subcutaneously once a week for four weeks (for a total of 5 treatments) with 50 mg/kg of modified oligonucleotides. One group of male CD-I mice was injected with PBS. Mice were euthanized 48 hours following the final administration.
Plasma chemistry markers
To evaluate the effect of modified oligonucleotides on liver function, plasma levels of blood urea nitrogen (BUN), albumin, alanine aminotransferase (ALT), aspartate aminotransferase (AST), and total bilirubin (TBIL) were measured using an automated clinical chemistry analyzer (Hitachi Olympus AU400c, Melville, NY). The results are presented in the Table below. Modified oligonucleotides that caused changes in the levels of any of the liver or kidney function markers outside the expected range for modified 15 oligonucleotides were excluded in further studies.
Table 41
Plasma chemistry markers in male CD-I mice
<td> Compound No.</td><td> BUN (mg/dL)</td><td> Albumin (g/dL)</td><td> AST (IU/L)</td><td> ALT (IU/L)</td><td> TBIL (mg/dL)</td>
<td> PBS</td><td> 23</td><td> 2.7</td><td> 80</td><td> 59</td><td> 0.2</td>
<td> 728466</td><td> 25</td><td> 3.0</td><td> 463</td><td> 868</td><td> 0.3</td>
<td> 729049</td><td> 24</td><td> 2.6</td><td> 246</td><td> 253</td><td> 0.2</td>
<td> 729205</td><td> 22</td><td> 2.4</td><td> 649</td><td> 1130</td><td> 0.6</td>
<td> 729433</td><td> 23</td><td> 2.4</td><td> 660</td><td> 579</td><td> 0.5</td>
<td> 785485</td><td> 25</td><td> 2.6</td><td> 559</td><td> 701</td><td> 0.3</td>
<td> 785666</td><td> 21</td><td> 2.5</td><td> 273</td><td> 321</td><td> 0.3</td>
<td> 785764</td><td> 21</td><td> 2.6</td><td> 78</td><td> 46</td><td> 0.2</td>
<td> 785791</td><td> 30</td><td> 3.1</td><td> 754</td><td> 937</td><td> 0.3</td>
<td> 785938</td><td> 24</td><td> 2.7</td><td> 402</td><td> 348</td><td> 0.4</td>
<td> 786501</td><td> 23</td><td> 3.2</td><td> 733</td><td> 1258</td><td> 0.4</td>
<td> 786503</td><td> 21</td><td> 2.7</td><td> 86</td><td> 44</td><td> 0.3</td>
<td> 786548</td><td> 22</td><td> 2.6</td><td> 135</td><td> 142</td><td> 0.2</td>
<td> 786578</td><td> 19</td><td> 1.5</td><td> 664</td><td> 439</td><td> 0.4</td>
<td> 786597</td><td> 20</td><td> 2.4</td><td> 136</td><td> 70</td><td> 0.2</td>
Body and organ weights
Body weights of CD-I mice were measured at days 1 and 43, and the average body weight for each group is presented in the Table below. Kidney, spleen, and liver weights were measured at the end of the study and are presented in the Table below. Modified oligonucleotides that caused any changes in organ weights 5 outside the expected range for modified oligonucleotides were excluded from further studies.
Table 42
Body and organ weights (in grams)
<td rowspan="2"> Compound No.</td><td colspan="2"> Body Weight (g)</td><td rowspan="2"> Kidney (g)</td><td rowspan="2"> Spleen (g)</td><td rowspan="2"> Liver (g)</td>
<td> Day 1</td><td> Day 43</td>
<td> PBS</td><td> 26</td><td> 33</td><td> 0.6</td><td> 0.1</td><td> 1.9</td>
<td> 728466</td><td> 27</td><td> 33</td><td> 0.4</td><td> 0.2</td><td> 2.4</td>
<td> 729049</td><td> 26</td><td> 35</td><td> 0.6</td><td> 0.2</td><td> 2.2</td>
<td> 729205</td><td> 24</td><td> 33</td><td> 0.5</td><td> 0.3</td><td> 3.0</td>
<td> 729433</td><td> 25</td><td> 29</td><td> 0.4</td><td> 0.1</td><td> 1.9</td>
<td> 785485</td><td> 25</td><td> 28</td><td> 0.4</td><td> 0.2</td><td> 1.4</td>
<td> 785666</td><td> 26</td><td> 33</td><td> 0.4</td><td> 0.2</td><td> 2.2</td>
<td> 785764</td><td> 25</td><td> 38</td><td> 0.7</td><td> 0.2</td><td> 2.3</td>
<td> 785791</td><td> 27</td><td> 33</td><td> 0.6</td><td> 0.1</td><td> 1.9</td>
<td> 785938</td><td> 28</td><td> 31</td><td> 0.4</td><td> 0.3</td><td> 1.6</td>
<td> 786501</td><td> 27</td><td> 38</td><td> 0.6</td><td> 0.5</td><td> 3.7</td>
<td> 786503</td><td> 26</td><td> 35</td><td> 0.6</td><td> 0.2</td><td> 2.1</td>
<td> 786548</td><td> 26</td><td> 38</td><td> 0.6</td><td> 0.1</td><td> 2.2</td>
<td> 786578</td><td> 27</td><td> 37</td><td> 0.6</td><td> 0.2</td><td> 1.7</td>
<td> 786597</td><td> 28</td><td> 40</td><td> 0.6</td><td> 0.3</td><td> 2.5</td>
Study 5
CD-I mice were treated with modified oligonucleotides selected from studies described above and evaluated for changes in the levels of various plasma chemistry markers.
Treatment
Groups of 6- to 7- week-old male CD-I mice (obtained from Charles River) were injected subcutaneously once a week for six weeks (for a total of 7 treatments) with 50 mg/kg of modified 15 oligonucleotides. One group of male CD-I mice was injected with PBS. Mice were euthanized 48 hours following the final administration.
Plasma chemistry markers
To evaluate the effect of modified oligonucleotides on liver function, plasma levels of blood urea nitrogen (BUN), albumin, alanine aminotransferase (ALT), aspartate aminotransferase (AST), and total bilirubin (TBIL) were measured using an automated clinical chemistry analyzer (Hitachi Olympus AU400c, 5 Melville, NY). The results are presented in the Table below. Modified oligonucleotides that caused changes in the levels of any of the liver or kidney function markers outside the expected range for modified oligonucleotides were excluded in further studies.
Table 43
Plasma chemistry markers in male CD-I mice
<td> Compound No.</td><td> BUN (mg/dL)</td><td> Albumin (g/dL)</td><td> AST (IU/L)</td><td> ALT (IU/L)</td><td> TBIL (mg/dL)</td>
<td> PBS</td><td> 29</td><td> 3.0</td><td> 57</td><td> 42</td><td> 0.2</td>
<td> 665892</td><td> 27</td><td> 3.1</td><td> 275</td><td> 265</td><td> 0.2</td>
<td> 665893</td><td> 25</td><td> 3.2</td><td> 1718</td><td> 2229</td><td> 2.9</td>
<td> 728958</td><td> 26</td><td> 2.6</td><td> 88</td><td> 57</td><td> 0.1</td>
<td> 728969</td><td> 27</td><td> 3.4</td><td> 149</td><td> 142</td><td> 0.2</td>
<td> 728970</td><td> 33</td><td> 3 5</td><td> 1142</td><td> 631</td><td> 0.4</td>
<td> 729(11$</td><td> H</td><td> 29</td><td></td><td> 111</td><td> 0 2</td>
<td> 729050</td><td> 26</td><td> 3.1</td><td> 141</td><td> 119</td><td> 0.2</td>
<td> 729494</td><td> 26</td><td> 2.9</td><td> 178</td><td> 53</td><td> 0.2</td>
Body and organ weights
Body weights of CD-I mice were measured at days 1 and 43, and the average body weight for each group is presented in the Table below. Kidney, spleen, and liver weights were measured at the end of the study and are presented in the Table below. Modified oligonucleotides that caused any changes in organ weights outside the expected range for modified oligonucleotides were excluded from further studies.
Table 44
Body and organ weights (in grams)
<td rowspan="2"> Compound No.</td><td colspan="2"> Body Weight (g)</td><td rowspan="2"> Kidney (g)</td><td rowspan="2"> Spleen (g)</td><td rowspan="2"> Liver (g)</td>
<td> Day 1</td><td> Day 43</td>
<td> PBS</td><td> 29</td><td> 37</td><td> 0.6</td><td> 0.1</td><td> 1.8</td>
<td> 665892</td><td> 31</td><td> 36</td><td> 0.6</td><td> 0.2</td><td> 2.3</td>
<td> 665893</td><td> 30</td><td> 35</td><td> 0.6</td><td> 0.2</td><td> 2.4</td>
<td> 728958</td><td> 31</td><td> 38</td><td> 0.7</td><td> 0.2</td><td> 2.0</td>
<td> 728969</td><td> 30</td><td> 37</td><td> 0.6</td><td> 0.2</td><td> 2.3</td>
<td> 728970</td><td> 29</td><td> 37</td><td> 0.5</td><td> 0.2</td><td> 2.7</td>
<td> 729018</td><td></td><td> 41</td><td> ii</td><td> ii</td><td> 2,4</td>
<td> 729050</td><td> 29</td><td> 35</td><td> 0.6</td><td> 0.2</td><td> 2.1</td>
<td> 729494</td><td> 29</td><td> 37</td><td> 0.6</td><td> 0.2</td><td> 2.2</td>
Example 5: Tolerability of modified oligonucleotides targeting human IRF5 in Sprague-Dawley rats
Sprague-Dawley rats are a multipurpose model used for safety and efficacy evaluations. <sup>,</sup>The rats were treated with lonis modified oligonucleotides from the studies described in the Examples above and evaluated for changes in the levels of various plasma chemistry markers.
Study 1
Treatment
Male Sprague-Dawley rats were maintained on a 12-hour light/dark cycle and fed ad libitum with Purina normal rat chow. Groups of 4 Sprague-Dawley rats each were weekly injected subcutaneously with 50 mg/kg of lonis oligonucleotide for 6 weeks (total 7 doses). Forty-eight hours after the last dose, rats were euthanized and organs, urine and plasma were harvested for further analysis.
Plasma chemistry markers
To evaluate the effect of lonis oligonucleotides on hepatic function, plasma levels of transaminases were measured using an automated clinical chemistry analyzer (Hitachi Olympus AU400c, Melville, NY). Plasma levels of ALT (alanine transaminase) and AST (aspartate transaminase) were measured and the results are presented in the Table below expressed in IU/L. Plasma levels of total bilimbin (TBIL), creatinine, albumin, and Blood Urea Nitrogen (BUN) were also measured using the same clinical chemistry analyzer and the results are also presented in the Table below. lonis modified oligonucleotides that caused changes in the levels of any markers of liver function outside the expected range for modified oligonucleotides were excluded in further studies.
Table 45
Plasma chemistry markers in Sprague-Dawley rats
<td> Compound No.</td><td> ALT (IU/L)</td><td> AST (IU/L)</td><td> BUN (mg/dL)</td><td> Albumin (g/dL)</td><td> Creatinine (mg/dL)</td><td> TBIL (mg/dL)</td>
<td> PBS</td><td> 57</td><td> 83</td><td> 16</td><td> 4.9</td><td> 0.4</td><td> 0.2</td>
<td> 665892</td><td> 216</td><td> 319</td><td> 25</td><td> 4.6</td><td> 0.5</td><td> 0.2</td>
<td> 665893</td><td> 365</td><td> 472</td><td> 31</td><td> 4.0</td><td> 0.6</td><td> 0.3</td>
<td> 728958</td><td> 90</td><td> 118</td><td> 26</td><td> 3.3</td><td> 0.5</td><td> 0.1</td>
<td> 728969</td><td> 154</td><td> 175</td><td> 24</td><td> 3.4</td><td> 0.5</td><td> 0.2</td>
<td> 728970</td><td> 309</td><td> 274</td><td> 34</td><td> 3.1</td><td> 0.6</td><td> 0.2</td>
<td> 729018</td><td> B</td><td> 98</td><td> B</td><td> ii</td><td> 05</td><td> 0 1</td>
<td> 729050</td><td> 118</td><td> 115</td><td> 86</td><td> 1.6</td><td> 1.1</td><td> 0.1</td>
<td> 729494</td><td> 60</td><td> 97</td><td> 43</td><td> 1.6</td><td> 0.5</td><td> 0.1</td>
Hematology assays
Blood obtained from mouse groups at week 6 were sent to IDEXX BioResearch for measurement of 5 blood cell counts. Counts taken include red blood cell (RBC) count, white blood cell (WBC) count, hemoglobin (HGB), hematocrit (HCT), and individual white blood cell counts, such as that of monocytes (MON), neutrophils (NEU), lymphocytes (LYM), and platelets (PLT). The results are presented in the tables below, lonis oligonucleotides that caused changes in the blood cell count outside the expected range for modified oligonucleotides were excluded in further studies.
Table 46
Blood Cell Count in Sprague-Dawley Rats
<td> Compound No.</td><td> WBC</td><td> RBC</td><td> HGB</td><td> HCT</td>
<td> PBS</td><td> 15</td><td> 9</td><td> 17</td><td> 54</td>
<td> 665892</td><td> 11</td><td> 9</td><td> 16</td><td> 51</td>
<td> 665893</td><td> 13</td><td> 9</td><td> 17</td><td> 54</td>
<td> 728958</td><td> 18</td><td> 8</td><td> 14</td><td> 45</td>
<td> 728969</td><td> 10</td><td> 8</td><td> 15</td><td> 49</td>
<td> 728970</td><td> 14</td><td> 8</td><td> 15</td><td> 49</td>
<td> 729018</td><td> i</td><td> i</td><td> B</td><td> 48</td>
<td> 729050</td><td> 16</td><td> 8</td><td> 13</td><td> 44</td>
<td> 729494</td><td> 17</td><td> 4</td><td> 7</td><td> 24</td>
Table 47
Blood Cell Count in Sprague-Dawley Rats
<td> Compound No.</td><td> NEU</td><td> LYM</td><td> MON</td><td> PLT</td>
<td> PBS</td><td> 14</td><td> 81</td><td> 3.6</td><td> 720</td>
<td> 665892</td><td> 15</td><td> 80</td><td> 4.6</td><td> 620</td>
<td> 665893</td><td> 13</td><td> 80</td><td> 5.9</td><td> 647</td>
<td> 728958</td><td> 14</td><td> 82</td><td> 4.1</td><td> 944</td>
<td> 728969</td><td> 12</td><td> 83</td><td> 4.8</td><td> 857</td>
<td> 728970</td><td> 12</td><td> 79</td><td> 8.6</td><td> 837</td>
<td> Biiii</td><td></td><td> 85</td><td> 44</td><td> 801</td>
<td> 729050</td><td> 13</td><td> 75</td><td> 10.1</td><td> 324</td>
<td> 729494</td><td> 13</td><td> 77</td><td> 9.5</td><td> 777</td>
Kidney function
To evaluate the effect of lonis oligonucleotides on kidney function, urinary levels of total protein and 5 creatinine were measured using an automated clinical chemistry analyzer (Hitachi Olympus AU400c, Melville, NY). The ratios of total protein to creatinine (P/C ratio) are presented in the Table below. lonis oligonucleotides that caused changes in the levels of the ratio outside the expected range for modified oligonucleotides were excluded in further studies.
Table 48
Total protein to creatinine ratio in Sprague-Dawley rats
<td> Compound No.</td><td> P/C Ratio</td>
<td> PBS</td><td> 0.7</td>
<td> 665892</td><td> 5.6</td>
<td> 665893</td><td> 5.9</td>
<td> 728958</td><td> 5.3</td>
<td> 728969</td><td> 4.1</td>
<td> 728970</td><td> 6.0</td>
<td></td><td></td>
<td> 729050</td><td> 8.2</td>
<td> 729494</td><td> 17.2</td>
Organ weights
Liver, heart, spleen and kidney weights were measured at the end of the study and are presented in the
Table below. lonis oligonucleotides that caused any changes in organ weights outside the expected range for modified oligonucleotides were excluded from further studies.
Table 49
Organ weights (g)
<td> Compound No.</td><td> Liver (g)</td><td> Kidney (g)</td><td> Spleen (g)</td>
<td> PBS</td><td> 17</td><td> 3.7</td><td> 0.8</td>
<td> 665892</td><td> 16</td><td> 3.1</td><td> 1.4</td>
<td> 665893</td><td> 14</td><td> 3.1</td><td> 1.0</td>
<td> 728958</td><td> 17</td><td> 3.2</td><td> 1.6</td>
<td> 728969</td><td> 15</td><td> 3.8</td><td> 1.5</td>
<td> 728970</td><td> 12</td><td> 3.3</td><td> 1.5</td>
<td> 729018</td><td> 15</td><td> 3.1</td><td> 1.7</td>
<td> 729050</td><td> 13</td><td> 3.8</td><td> 1.4</td>
<td> 729494</td><td> 15</td><td> 4.1</td><td> 2.0</td>
Study 2
Treatment
Male Sprague-Dawley rats were maintained on a 12-hour light/dark cycle and fed ad libitum with 5 Purina normal rat chow. Groups of 4 Sprague-Dawley rats each were weekly injected subcutaneously with 50 mg/kg of lonis oligonucleotide for 6 weeks (total 7 doses). Forty-eight hours after the last dose, the rats were euthanized; and organs, urine and plasma were harvested for further analysis.
Plasma chemistry markers
To evaluate the effect of lonis oligonucleotides on hepatic function, plasma levels of transaminases 10 were measured using an automated clinical chemistry analyzer (Hitachi Olympus AU400c, Melville, NY). Plasma levels of ALT (alanine transaminase) and AST (aspartate transaminase) were measured and the results are presented in the Table below expressed in IU/L. Plasma levels of total bilirubin (TBIL), albumin, and blood urea nitrogen (BUN) were also measured using the same clinical chemistry analyzer and the results are also presented in the Table below. lonis modified oligonucleotides that caused changes in the levels of any markers 15 of liver function outside the expected range for modified oligonucleotides were excluded in further studies.
Table 50
Plasma chemistry markers in Sprague-Dawley rats
<td> Compound No.</td><td> ALT (IU/L)</td><td> AST (IU/L)</td><td> BUN (mg/dL)</td><td> Albumin (g/dL)</td><td> TBIL (mg/dL)</td>
<td> PBS</td><td> 41</td><td> 73</td><td> 18</td><td> 3.4</td><td> 0.2</td>
<td> 729049</td><td> 70</td><td> 121</td><td> 154</td><td> 1.4</td><td> 0.1</td>
<td> 785478</td><td> 68</td><td> 112</td><td> 41</td><td> 1.7</td><td> 0.1</td>
<td> 785525</td><td> 78</td><td> 118</td><td> 20</td><td> 3.3</td><td> 0.1</td>
<td> 785539</td><td> 60</td><td> 128</td><td> 55</td><td> 2.4</td><td> 0.1</td>
<td> 785674</td><td> 64</td><td> 131</td><td> 22</td><td> 3.2</td><td> 0.1</td>
<td> 785675</td><td> 123</td><td> 139</td><td> 18</td><td> 3.4</td><td> 0.2</td>
<td> 785764</td><td> 65</td><td> 95</td><td> 60</td><td> 1.7</td><td> 0.2</td>
<td> 786503</td><td> 33</td><td> 72</td><td> 17</td><td> 2.9</td><td> 0.1</td>
<td> 786524</td><td> 64</td><td> 105</td><td> 21</td><td> 3.1</td><td> 0.2</td>
<td> 786548</td><td> 34</td><td> 67</td><td> 20</td><td> 3.2</td><td> 0.1</td>
<td> 786597</td><td> 40</td><td> 66</td><td> 19</td><td> 2.8</td><td> 0.1</td>
Hematology assays
Blood obtained from mouse groups at week 6 were sent to IDEXX BioResearch for measurement of blood cell counts. Counts taken include red blood cell (RBC) count, white blood cell (WBC) count, hemoglobin (HGB), hematocrit (HCT), and individual white blood cell counts, such as that of monocytes (MON), 5 neutrophils (NEU), lymphocytes (LYM), and platelets (PLT). The results are presented in the tables below, lonis oligonucleotides that caused changes in the blood cell count outside the expected range for modified oligonucleotides were excluded in further studies.
Table 51
Blood cell count in Sprague-Dawley Rats
<td> Compound No.</td><td> WBC</td><td> RBC</td><td> HGB</td><td> HCT</td>
<td> PBS</td><td> 14</td><td> 8</td><td> 16</td><td> 50</td>
<td> 729049</td><td> 30</td><td> 5</td><td> 9</td><td> 27</td>
<td> 785478</td><td> 45</td><td> 7</td><td> 12</td><td> 37</td>
<td> 785525</td><td> 18</td><td> 8</td><td> 14</td><td> 44</td>
<td> 785539</td><td> 32</td><td> 4</td><td> 8</td><td> 25</td>
<td> 785674</td><td> 34</td><td> 8</td><td> 14</td><td> 43</td>
<td> 785675</td><td> 16</td><td> 9</td><td> 15</td><td> 47</td>
<td> 785764</td><td> 22</td><td> 6</td><td> 10</td><td> 33</td>
<td> 786503</td><td> 20</td><td> 7</td><td> 14</td><td> 39</td>
<td> 786524</td><td> 16</td><td> 8</td><td> 14</td><td> 44</td>
<td> 786548</td><td> 18</td><td> 8</td><td> 14</td><td> 43</td>
<td> 786597</td><td> 28</td><td> 4</td><td> 7</td><td> 24</td>
Table 52
Blood cell count in Sprague-Dawley Rats
<td> Compound No.</td><td> NEU</td><td> LYM</td><td> MON</td><td> PLT</td>
<td> PBS</td><td> 10</td><td> 84</td><td> 5.5</td><td> 904</td>
<td> 729049</td><td> 47</td><td> 45</td><td> 3.8</td><td> 1418</td>
<td> 785478</td><td> 11</td><td> 89</td><td> 1.0</td><td> 383</td>
<td> 785525</td><td> 13</td><td> 77</td><td> 8.6</td><td> 881</td>
<td> 785539</td><td> 34</td><td> 57</td><td> 9.0</td><td> 734</td>
<td> 785674</td><td> 12</td><td> 79</td><td> 7.0</td><td> 731</td>
<td> 785675</td><td> 9</td><td> 81</td><td> 9.2</td><td> 783</td>
<td> 785764</td><td> 17</td><td> 76</td><td> 6.8</td><td> 1231</td>
<td> 786503</td><td> 10</td><td> 81</td><td> 7.5</td><td> 650</td>
<td> 786524</td><td> 6</td><td> 87</td><td> 6.6</td><td> 731</td>
<td> 786548</td><td> 4</td><td> 87</td><td> 6.6</td><td> 653</td>
<td> 786597</td><td> 15</td><td> 77</td><td> 6.9</td><td> 965</td>
Kidney function
To evaluate the effect of lonis oligonucleotides on kidney function, urinary levels of total protein and 5 creatinine were measured using an automated clinical chemistry analyzer (Hitachi Olympus AU400c, Melville, NY). The ratios of total protein to creatinine (P/C ratio) are presented in the Table below. lonis oligonucleotides that caused changes in the levels of the ratio outside the expected range for modified oligonucleotides were excluded in further studies.
Table 53
Total protein to creatinine ratio in Sprague-Dawley rats
<td> Compound No.</td><td> P/C Ratio</td>
<td> PBS</td><td> 0.8</td>
<td> 729049</td><td> 11.1</td>
<td> 785478</td><td> 15.0</td>
<td> 785525</td><td> 7.4</td>
<td> 785539</td><td> 51.1</td>
<td> 785674</td><td> 4.4</td>
<td> 785675</td><td> 2.1</td>
<td> 785764</td><td> 20.8</td>
<td> 786503</td><td> 2.5</td>
<td> 786524</td><td> 1.7</td>
<td> 786548</td><td> 2.5</td>
<td> 786597</td><td> 14.4</td>
Organ weights
Liver, heart, spleen and kidney weights were measured at the end of the study, and are presented in the
Table below. lonis oligonucleotides that caused any changes in organ weights outside the expected range for modified oligonucleotides were excluded from further studies.
Table 54
Organ weights (g)
<td> Compound No.</td><td> Liver</td><td> Kidney</td><td> Spleen</td>
<td> PBS</td><td> 19</td><td> 3.3</td><td> 1.0</td>
<td> 729049</td><td> 19</td><td> 3.5</td><td> 1.1</td>
<td> 785478</td><td> 19</td><td> 4.2</td><td> 2.3</td>
<td> 785525</td><td> 18</td><td> 3.4</td><td> 1.5</td>
<td> 785539</td><td> 18</td><td> 4.3</td><td> 2.3</td>
<td> 785674</td><td> 17</td><td> 2.7</td><td> 1.6</td>
<td> 785675</td><td> 13</td><td> 2.8</td><td> 1.4</td>
<td> 785764</td><td> 18</td><td> 4.5</td><td> 2.7</td>
<td> 786503</td><td> 16</td><td> 2.8</td><td> 1.8</td>
<td> 786524</td><td> 14</td><td> 3.2</td><td> 1.8</td>
<td> 786548</td><td> 13</td><td> 2.6</td><td> 1.4</td>
<td> 786597</td><td> 16</td><td> 3.6</td><td> 2.4</td>
Example 6: Effect of modified oligonucleotides on human IRF5 expression in a KARPAS-229 xenograft model in NOD Scid mice
Male, 14-15 week old NOD Scid mice (Jackson Laboratory) were inoculated with human nonHodgkin's Large Cell Lymphoma KARPAS-229 cells and treated with modified oligonucleotides described in the tables above or with PBS. Effects of the modified oligonucleotides on IRF5 RNA expression in the tumors and tolerability in the mice were evaluated.
Treatment
The mice were inoculated with 2 million of KARPAS-229 cells in 1:1 matrigel + KARPAS-299 suspension subcutaneously in the flank for tumor development. Modified oligonucleotide treatment started when the mean tumor size reached approximately 100mm<sup>3</sup> The mice were subcutaneously injected with modified oligonucleotide at a concentration of 250mg/kg/week for two weeks, for a total of eight doses. An additional control group was similarly treated with PBS for 8 doses. On day 12 after start of treatment, the mice were sacrificed, and IRF5 levels in tumor were measured.
RNA Analysis
Primer probe set HTS4167 was used to measure human IRF5 RNA levels. Results are presented as percent change of RNA, relative to PBS control, normalized to both human GAPDH and human beta-actin or ACTB. As presented in the Table below, treatment with lonis modified oligonucleotides resulted in significant reduction of IRF5 RNA in comparison to the PBS control. ‘0’ indicates that the oligonucleotides did not inhibit RNA expression.
Table 55
Modified oligonucleotide mediated inhibition of human IRF5 RNA expression in KARPAS-229 model
<td rowspan="2"> Compound No.</td><td colspan="2"> /«Inhibition</td>
<td> Normalized to GAPDH</td><td> Normalized to ACTB</td>
<td> PBS</td><td> 0</td><td> 0</td>
<td> 728969</td><td> 14</td><td> 18</td>
<td></td><td> 34</td><td> 47</td>
<td> 729049</td><td> 43</td><td> 54</td>
<td> 785478</td><td> 34</td><td> 33</td>
<td> 785525</td><td> 32</td><td> 43</td>
<td> 785674</td><td> 0</td><td> 26</td>
<td> 785675</td><td> 0</td><td> 13</td>
<td> 785764</td><td> 0</td><td> 7</td>
<td> 786503</td><td> 0</td><td> 29</td>
<td> 786524</td><td> 31</td><td> 43</td>
<td> 786597</td><td> 45</td><td> 55</td>
Plasma Chemistries
In addition, plasma levels of ALT (alanine transaminase) and AST (aspartate transaminase) were measured using an automated clinical chemistry analyzer (Hitachi Olympus AU400c, Melville, NY)and the 5 results are presented in the Table below expressed in IU/L. Plasma levels of bilirubin, albumin, and BUN were also measured using the same clinical chemistry analyzer and the results are also presented in the Table below. N/A refers to groups where data is not available, usually due to death of animal.
Table 56
Plasma chemistry markers in xenograft model
<td> Compound No.</td><td> ALT (U/L)</td><td> AST (U/L)</td><td> BUN (mg/dL)</td><td> Albumin (g/dL)</td><td> Bilirubin (mg/dL)</td>
<td> PBS</td><td> 28</td><td> 80</td><td> 24</td><td> 2.</td><td> 0.2</td>
<td> 728969</td><td> 81</td><td> 114</td><td> 28</td><td> 2.7</td><td> 0.2</td>
<td></td><td> in</td><td> 257</td><td> n</td><td> iii</td><td> ii</td>
<td> 729049</td><td> 3640</td><td> 2555</td><td> 22</td><td> 2.7</td><td> 1.2</td>
<td> 785478</td><td> 4243</td><td> 2610</td><td> 20</td><td> 2.8</td><td> 1.1</td>
<td> 785525</td><td> 3989</td><td> 3936</td><td> 21</td><td> 2.7</td><td> 5.2</td>
<td> 785674</td><td> 1289</td><td> 939</td><td> 20</td><td> 2.6</td><td> 0.2</td>
<td> 785675</td><td> 411</td><td> 368</td><td> 18</td><td> 2.5</td><td> 0.1</td>
<td> 785764</td><td> 462</td><td> 736</td><td> 11</td><td> 3.1</td><td> 10.5</td>
<td> 786503</td><td> 630</td><td> 717</td><td> 24</td><td> 2.5</td><td> 0.2</td>
<td> 786524</td><td> 5094</td><td> 3564</td><td> 32</td><td> 2.5</td><td> 8.9</td>
<td> 786597</td><td> 2705</td><td> 2479</td><td> 24</td><td> 2.4</td><td> 10.7</td>
Example 7: Effect of antisense inhibition of human IRF5 in transgenic mouse model
A transgenic mouse model was developed in-house using the Fosmid ABC10-44445800E12 (NCBI Clone DB ID :63 3 8 898). The clone was digested at Spel and FspI restriction sites to produce a region containing the human IRF5 gene with 12,002bp upstream and 5159bp downstream of the IRF5 gene included. The gene fragment was introduced into fertilized eggs from C57BL/6 mice by pronuclear injection to produce four founder lines. Line C57BL/6-Tg(IRF5)F20.11 was used in the experiments described herein. Human IRF5
RNA expression is found in the lung, spleen, kidney, and peritoneal exudate cells (PEC) in this model. The efficacy of lonis oligonucleotides was evaluated in this model.
Treatment
Transgenic mice were maintained on a 12-hour light/dark cycle and were fed ad libitum normal Purina mouse chow. Animals were acclimated for at least 7 days in the research facility before initiation of the experiment. Modified oligonucleotides were prepared in PBS and sterilized by filtering through a 0.2 micron filter.
The transgenic mice were divided into groups of 4 mice each for modified oligonucleotide treatment. Groups received subcutaneous injections of lonis oligonucleotide at a dose of either 35 mg/kg once a week or 70mg/kg once a week for three weeks (4 treatments). One group of four mice received subcutaneous injections of PBS once a week for three weeks (4 treatments). The PBS-injected group served as the control group to which oligonucleotide-treated groups were compared.
RNA analysis
On day 23, RNA was extracted from PECs, lung and spleen for real-time RTPCR analysis of IRF5 RNA expression. Primer probe set HTS4167 was used to measure human IRF5 RNA levels. Results are presented as percent change of RNA, relative to PBS control, normalized to mouse GAPDH.
As presented in the Tables below, treatment with lonis modified oligonucleotides resulted in significant reduction of IRF5 RNA in comparison to the PBS control. ‘0’ indicates that the oligonucleotides did not inhibit RNA expression.
Table 57
Modified oligonucleotide mediated inhibition (%) of human IRF5 in transgenic model (data normalized to mouse GAPDH)
<td> Dose (mg/kg)</td><td> Compound No.</td><td> PEC</td><td> Lung</td><td> Spleen</td>
<td></td><td> PBS</td><td> 0</td><td> 0</td><td> 0</td>
<td rowspan="8"> 35</td><td> 728958</td><td> 75</td><td> 20</td><td> 44</td>
<td> 729018</td><td> 53</td><td> B</td><td> 30</td>
<td> 785525</td><td> 2</td><td> 20</td><td> 54</td>
<td> 785674</td><td> 30</td><td> 7</td><td> 27</td>
<td> 785675</td><td> 57</td><td> 12</td><td> 36</td>
<td> 786503</td><td> 53</td><td> 29</td><td> 55</td>
<td> 786524</td><td> 64</td><td> 27</td><td> 9</td>
<td> 786548</td><td> 35</td><td> 2</td><td> 10</td>
<td rowspan="2"> 70</td><td> 728958</td><td> 23</td><td> 0</td><td> 23</td>
<td> iii</td><td> H</td><td> H</td><td> 58</td>
<td rowspan="6"></td><td> 785525</td><td> 45</td><td> 32</td><td> 49</td>
<td> 785674</td><td> 76</td><td> 12</td><td> 49</td>
<td> 785675</td><td> 47</td><td> 37</td><td> 63</td>
<td> 786503</td><td> 61</td><td> 23</td><td> 47</td>
<td> 786524</td><td> 81</td><td> 30</td><td> 0</td>
<td> 786548</td><td> 75</td><td> 14</td><td> 52</td>
Example 8: Effect of modified oligonucleotides targeting human IRF5 in cynomolgus monkeys
Cynomolgus monkeys were treated with lonis modified oligonucleotides selected from studies described in the Examples above. Modified oligonucleotide tolerability was evaluated.
Treatment
Prior to the study, the monkeys were kept in quarantine during which the animals were observed daily for general health. The monkeys were 2-4 years old and weighed 2-4 kg. Nine groups of 4 randomly assigned male cynomolgus monkeys each were injected subcutaneously with lonis oligonucleotide or saline in a clockwise rotation between four different sites on the back. Following loading doses on days 1,4 and 7, the monkeys were dosed once per week (on days 14, 21, 28, 35, 42, 49, 56, 63, 70, 77 and 84) with 35 mg/kg of lonis oligonucleotide. A control group of 4 cynomolgus monkeys was injected with 0.9% saline in a similar manner and served as the control group.
During the study period, the monkeys were observed twice daily for signs of illness or distress. Any animal experiencing more than momentary or slight pain or distress due to the treatment, injury or illness was treated by the veterinary staff with approved analgesics or agents to relieve the pain after consultation with the Study Director. Any animal in poor health or in a possible moribund condition was identified for further monitoring and possible euthanasia. Scheduled euthanasia of the animals was conducted on day 86 approximately 48 hours after the last dose by exsanguination while under deep anesthesia. The protocols described in the Example were approved by the Institutional Animal Care and Use Committee (IACUC).
Body and organ weight measurements
To evaluate the effect of lonis oligonucleotides on the overall health of the animals, body and organ weights were measured. Terminal body weight was measured prior to necropsy. Organ weights were measured as well, and all weight measurements are presented in the Table below. The results indicate that effect of treatment with modified oligonucleotides on body and organ weights was within the expected range for modified oligonucleotides. Specifically, treatment with ION 729018 was well tolerated in terms of the body and organ weights of the monkeys.
Table 58
Body and organ weights (g)
<td> Compound No.</td><td> Body Weight (g) Day 86</td><td> Heart</td><td> kidney</td><td> spleen</td><td> testes</td><td> thymus</td><td> liver</td>
<td> Saline</td><td> 2828</td><td> 12</td><td> 14</td><td> 2</td><td> 2</td><td> 3</td><td> 59</td>
<td> 728958</td><td> 2791</td><td> 10</td><td> 17</td><td> 3</td><td> 1</td><td> 3</td><td> 72</td>
<td> 729018</td><td> יייו</td><td></td><td></td><td> 1</td><td> 1</td><td> 1</td><td> 1</td>
<td> 785525</td><td> 3017</td><td> 12</td><td> 17</td><td> 5</td><td> 1</td><td> 4</td><td> 78</td>
<td> 785674</td><td> 2618</td><td> 10</td><td> 15</td><td> 4</td><td> 1</td><td> 2</td><td> 63</td>
<td> 785675</td><td> 2793</td><td> 11</td><td> 16</td><td> 3</td><td> 2</td><td> 3</td><td> 63</td>
<td> 786503</td><td> 2926</td><td> 10</td><td> 17</td><td> 4</td><td> 1</td><td> 3</td><td> 73</td>
<td> 786524</td><td> 2917</td><td> 11</td><td> 16</td><td> 5</td><td> 1</td><td> 4</td><td> 67</td>
<td> 786548</td><td> 2668</td><td> 9</td><td> 16</td><td> 4</td><td> 1</td><td> 3</td><td> 66</td>
Kidney and Liver function
To evaluate the effect of lonis oligonucleotides on hepatic and kidney function, blood samples were collected from all the study groups on day 86. The monkeys were fasted overnight prior to blood collection. Blood was collected in tubes without anticoagulant for serum separation. The tubes were kept at room temperature for a minimum of 90 minutes and then centrifuged at 3000 rpm for 10 minutes to obtain serum. Levels of various liver function markers were measured using a Toshiba 200FR NEO chemistry analyzer (Toshiba Co., Japan). Plasma levels of blood urea nitrogen (BUN), creatinine (CREA), total protein (TP), albumin (ALB), alanine aminotransferase (ALT), aspartate aminotransferase (AST), and total bilirubin (TBIL) were measured and the results are presented in the Table below. The results indicate that modified oligonucleotides had no effect on liver or kidney function outside the expected range for modified oligonucleotides. Specifically, treatment with ION 729018 was well tolerated in terms of the liver and kidney function in monkeys.
Table 59
Liver and kidney function markers in cynomolgus monkey plasma
<td> Compound No.</td><td> BUN (mg/dL)</td><td> CREA (mg/dL)</td><td> TP (g/dL)</td><td> ALB (g/dL)</td><td> ALT (IU/L)</td><td> AST (IU/L)</td><td> TBIL (mg/dL)</td>
<td> Saline</td><td> 24</td><td> 0.8</td><td> 7.1</td><td> 4.2</td><td> 44</td><td> 75</td><td> 0.3</td>
<td> 728958</td><td> 26</td><td> 0.8</td><td> 7.0</td><td> 4.2</td><td> 55</td><td> 99</td><td> 0.2</td>
<td> 7290.18</td><td> II</td><td> 09</td><td> ii</td><td> 4.0</td><td> 73</td><td> 95</td><td> ii</td>
<td> 785525</td><td> 24</td><td> 1.0</td><td> 7.0</td><td> 4.0</td><td> 44</td><td> 102</td><td> 0.2</td>
<td> 785674</td><td> 26</td><td> 0.9</td><td> 7.1</td><td> 3.8</td><td> 53</td><td> 110</td><td> 0.2</td>
<td> 785675</td><td> 25</td><td> 0.8</td><td> 6.8</td><td> 4.0</td><td> 57</td><td> 96</td><td> 0.3</td>
<td> 786503</td><td> 28</td><td> 0.9</td><td> 6.7</td><td> 3.9</td><td> 58</td><td> 108</td><td> 0.2</td>
<td> 786524</td><td> 27</td><td> 0.9</td><td> 7.6</td><td> 3.7</td><td> 58</td><td> 93</td><td> 0.2</td>
<td> 786548</td><td> 27</td><td> 0.9</td><td> 7.0</td><td> 4.0</td><td> 58</td><td> 102</td><td> 0.3</td>
Pro-inflammatory proteins analysis
To evaluate any inflammatory effect of lonis oligonucleotides in cynomolgus monkeys, blood samples were taken for analysis. <sup>,</sup>The monkeys were fasted overnight prior to blood collection. On day 84 (pre-dose and 24hours post-dose), approximately 0.8 mL of blood was collected from each animal and put into tubes without anticoagulant for serum separation. The tubes were kept at room temperature for a minimum of 90 min and then centrifuged at 3,000 rpm for 10 min at room temperature to obtain serum. Complement C3 were measured using a Toshiba 120 FRNEO chemistry analyzer (Toshiba Co., Japan). The results indicate that treatment with ION 729018 did not cause any inflammation in monkeys. Another marker of inflammation, C-Reactive Protein (CRP) was tested on day 86.
Table 60
Pro-inflammatory protein analysis in cynomolgus monkeys
<td rowspan="2"> Compound No.</td><td colspan="2"> Complement C3 (mg/dL)</td><td> CRP (mg/L)</td>
<td> Day 84 (predose)</td><td> Day 84 (24hr postdose)</td><td> day 86</td>
<td> Saline</td><td> 106</td><td> 104</td><td> 0.1</td>
<td> 728958</td><td> 96</td><td> 91</td><td> 0.1</td>
<td> 729018</td><td> II</td><td> H</td><td> 0,1</td>
<td> 785525</td><td> 90</td><td> 88</td><td> 0.2</td>
<td> 785674</td><td> 79</td><td> 71</td><td> 0.1</td>
<td> 785675</td><td> 82</td><td> 83</td><td> 0.1</td>
<td> 786503</td><td> 93</td><td> 101</td><td> 0.1</td>
<td> 786524</td><td> 86</td><td> 78</td><td> 0.6</td>
<td> 786548</td><td> 87</td><td> 92</td><td> 1.2</td>
Hematology
To evaluate any effect of lonis oligonucleotides in cynomolgus monkeys on hematologic parameters, blood samples of approximately 0.5 mL of blood was collected from each of the available study animals on day 86. The samples were collected in tubes containing K2-EDTA. Samples were analyzed for red blood cell (RBC) count, Hemoglobin (HGB), Hematocrit (HCT), platelet count (PLT), white blood cells (WBC) count, individual white blood cell counts, such as that of monocytes (MON), neutrophils (NEU), and lymphocytes (LYM) using an ADVIA2120i hematology analyzer (Siemens, USA).
The data indicate the oligonucleotides did not cause any changes in hematologic parameters outside the expected range for modified oligonucleotides at this dose. Specifically, treatment with ION 729018 was well tolerated in terms of the hematologic parameters of the monkeys.
Table 61
Blood cell counts in cynomolgus monkeys
<td> Compound No.</td><td> RBC (xl0<sup>6</sup>/pL)</td><td> HGB (2/dL)</td><td> HCT (%)</td><td> PLT (l(F/pL)</td>
<td> Saline</td><td> 5.6</td><td> 13.0</td><td> 43</td><td> 312</td>
<td> 728958</td><td> 5.7</td><td> 12.7</td><td> 43</td><td> 442</td>
<td> 729018</td><td> 6 J</td><td> 134</td><td> 44</td><td> in</td>
<td> 785525</td><td> 5.4</td><td> 12.2</td><td> 41</td><td> 459</td>
<td> 785674</td><td> 5.6</td><td> 13.1</td><td> 43</td><td> 405</td>
<td> 785675</td><td> 5.9</td><td> 13.5</td><td> 45</td><td> 342</td>
<td> 786503</td><td> 5.6</td><td> 12.5</td><td> 43</td><td> 378</td>
<td> 786524</td><td> 5.8</td><td> 12.6</td><td> 44</td><td> 252</td>
<td> 786548</td><td> 5.9</td><td> 13.3</td><td> 45</td><td> 390</td>
Table 62
Blood cell counts in cynomolgus monkeys
<td> Compound No.</td><td> WBC (xl0<sup>3</sup>/pL)</td><td> NEU (%)</td><td> LYM (%)</td><td> MON (%)</td>
<td> Saline</td><td> 11</td><td> 4</td><td> 7</td><td> 0.3</td>
<td> 728958</td><td> 10</td><td> 4</td><td> 6</td><td> 0.3</td>
<td> 729018</td><td> i</td><td> I</td><td> i</td><td> 02</td>
<td> 785525</td><td> 12</td><td> 4</td><td> 7</td><td> 0.3</td>
<td> 785674</td><td> 16</td><td> 8</td><td> 7</td><td> 0.4</td>
<td> 785675</td><td> 9</td><td> 1</td><td> 7</td><td> 0.3</td>
<td> 786503</td><td> 16</td><td> 4</td><td> 11</td><td> 0.3</td>
<td> 786524</td><td> 9</td><td> 4</td><td> 4</td><td> 0.3</td>
<td> 786548</td><td> 10</td><td> 3</td><td> 6</td><td> 0.2</td>
Coagulation
To evaluate effect of lonis modified oligonucleotides on coagulation in cynomolgus monkeys, blood 15 samples of approximately 0.9 mL were collected from each of the available study animals on day 86. The samples were collected in tubes containing 3.2% sodium citrate. Coagulation parameters tested include Activated partial thromboplastin time (APTT), prothrombin time (PT) and Fibrinogen (FIB).
Hie data indicate the modified oligonucleotides did not cause any changes in coagulation parameters outside the expected range for modified oligonucleotides at this dose. Specifically, treatment with ION 729018 was well tolerated in terms of the coagulation parameters of the monkeys.
Table 63
Coagulation Parameters in cynomolgus monkeys
<td> Compound No.</td><td> PT (sec)</td><td> FIB (mg/dL)</td><td> APTT (sec)</td>
<td> Saline</td><td> 10</td><td> 195</td><td> 18</td>
<td> 728958</td><td> 10</td><td> 249</td><td> 19</td>
<td> 729018</td><td> 10</td><td> 219</td><td> 1</td>
<td> 785525</td><td> 10</td><td> 208</td><td> 20</td>
<td> 785674</td><td> 9</td><td> 238</td><td> 19</td>
<td> 785675</td><td> 9</td><td> 216</td><td> 19</td>
<td> 786503</td><td> 10</td><td> 226</td><td> 18</td>
<td> 786524</td><td> 10</td><td> 235</td><td> 18</td>
<td> 786548</td><td> 10</td><td> 302</td><td> 16</td>
Pharmacokine tic Analysis
Accumulation of modified oligonucleotides in the liver and kidney were measured in tissues collected at necropsy. 729018 showed tissue accumulation profiles in the kidney and liver that were typical for this class of compound.
Table 64
Mean tissue concentration on Day 86 following 12-weeks subcutaneous administration
<td> Organ</td><td> Compound No.</td><td> Mean Concentration (pg/g)</td>
<td rowspan="6"> Kidney Cortex</td><td> 728958</td><td> 2078</td>
<td> 729018</td><td> 1472</td>
<td> 785525</td><td> 1702</td>
<td> 785674</td><td> 2169</td>
<td> 785675</td><td> 1444</td>
<td> 786503</td><td> 1180</td>
<td rowspan="2"></td><td> 786524</td><td> 1679</td>
<td> 786548</td><td> 1513</td>
<td rowspan="8"> Liver</td><td> 728958</td><td> 657</td>
<td> 729018</td><td> 763</td>
<td> 785525</td><td> 732</td>
<td> 785674</td><td> 773</td>
<td> 785675</td><td> 753</td>
<td> 786503</td><td> 496</td>
<td> 786524</td><td> 409</td>
<td> 786548</td><td> 392</td>
Example 9: Measurement of viscosity of modified oligonucleotides targeting human IRF5
Hie viscosity of select modified oligonucleotides from the studies described above was measured with 5 the aim of screening out modified oligonucleotides which have a viscosity of more than 40 centipoise (cP). Modified oligonucleotides having a viscosity greater than 40 cP would have less than optimal viscosity.
Oligonucleotides (32-38 mg) were weighed into a glass vial; approximately 100 pL of water was added, and the modified oligonucleotide was dissolved into solution by heating the vial to 55°C. Part (75 pL) of the pre-heated sample was pipetted to a micro-viscometer (PAC Cambridge Viscosity Viscometer). The 10 temperature of the micro-viscometer was set to 25°C and the viscosity of the sample was measured. Hie entire 75uL of sample was them combined with the remaining portion of the sample was diluted appropriately for UV reading at 260 nM (Cary UV instrument). The data below indicates that all the modified oligonucleotides solutions are optimal in their viscosity under the criterion stated above.
Table 65
Viscosity of modified oligonucleotides
<td> Compound No.</td><td> Concentration by weight (mg/mL)</td><td> Concentration by UV (mg/mL)</td><td> Viscocity (cP)</td>
<td> 728958</td><td> 300</td><td> 201</td><td> 17</td>
<td> 729018</td><td> 350</td><td></td><td> 11</td>
<td> 785524</td><td> 350</td><td> 277</td><td> 14</td>
<td> 785674</td><td> 350</td><td> 280</td><td> 16</td>
<td> 786503</td><td> 300</td><td> 218</td><td> 40</td>
<td> 786548</td><td> 270</td><td> 214</td><td> 17</td>
<td> 785675</td><td> 250</td><td> 209</td><td> 6</td>
<td> 786524</td><td> 250</td><td> 208</td><td> 36</td>
Example 10: Confirmation of dose-dependent inhibition of human IRF5 gapmers
Modified oligonucleotides described in the studies above exhibiting significant in vitro inhibition of IRF5 mRNA were selected and tested at various doses in human A-431 cells and SH-SY5Y cells.
Study 1
Cultured A-431 cells at a density of 11,000 cells per well were treated using free uptake with modified oligonucleotides diluted to different concentrations as specified in the Tables below. After a treatment period of approximately 48 hours, IRF5 mRNA levels were measured using the Human IRF5 primer-probe set RTS37490 ((forward sequence CCACCTCAGCCCTACAAGA, designated herein as SEQ ID NO: 17; reverse sequence TCAGGCTTGGCAACATCC; designated herein as SEQ ID NO: 18; probe sequence CCTGCTCCCACAGACTCCCAG, designated herein as SEQ ID NO: 19). IRF5 mRNA levels were normalized to human GAPDH measured by primer-probe set RTS 104. Results are presented in the tables below as percent inhibition of IRF5, relative to untreated control cells.
The half maximal inhibitory concentration (IC50) of each modified oligonucleotide is also presented. IC50 was calculated using a linear regression on a log/linear plot of the data in excel.
Table 66
Multi-dose assay of modified oligonucleotides in A-431 cells
<td rowspan="2"> Compound No.</td><td colspan="5"> % Inhibition</td><td rowspan="2"> IC50 (μΜ)</td>
<td> 23.44 nM</td><td> 93.75 nM</td><td> 375.00 nM</td><td> 1500.00 nM</td><td> 6000.00 nM</td>
<td> 728958</td><td> 0</td><td> 16</td><td> 36</td><td> 57</td><td> 71</td><td> 1 07</td>
<td> 729018</td><td> II</td><td> B</td><td> B</td><td> H</td><td> il</td><td> 0 05</td>
<td> 785525</td><td> 32</td><td> 68</td><td> 88</td><td> 95</td><td> 97</td><td> 0.05</td>
<td> 785675</td><td> 7</td><td> 27</td><td> 57</td><td> 80</td><td> 90</td><td> 0.28</td>
<td> 786503</td><td> 29</td><td> 70</td><td> 93</td><td> 98</td><td> 99</td><td> 0.05</td>
Study 2
Cultured SH-SY5Y cells at a density of 45,000 cells per well were treated using electroporation with modified oligonucleotides diluted to different concentrations as specified in the Tables below. After a treatment period of approximately 24 hours, IRF5 mRNA levels were measured using the Human IRF5 primer-probe set RTS37490. IRF5 mRNA levels were normalized to human GAPDH measured by primer-probe set RTS 104. Results are presented in the tables below as percent inhibition of IRF5, relative to untreated control cells.
Hie half maximal inhibitory concentration (IC50) of each modified oligonucleotide is also presented.
IC50 was calculated using a linear regression on a log/linear plot of the data in excel.
Table 67
Multi-dose assay of modified oligonucleotides in SH-SY5Y cells
<td rowspan="2"> Compound No.</td><td colspan="5"> % Inhibition</td><td rowspan="2"> IC50 (hM)</td>
<td> 23.44 nM</td><td> 93.75 nM</td><td> 375.00 nM</td><td> 1500.00 nM</td><td> 6000.00 nM</td>
<td> 728958</td><td> 0</td><td> 0</td><td> 23</td><td> 47</td><td> 64</td><td> 1.07</td>
<td> 729018</td><td> i</td><td> B</td><td> B</td><td> 66</td><td> H</td><td> 0.05</td>
<td> 785525</td><td> 8</td><td> 15</td><td> 36</td><td> 68</td><td> 80</td><td> 0.05</td>
<td> 785675</td><td> 0</td><td> 0</td><td> 17</td><td> 42</td><td> 65</td><td> 0.28</td>
<td> 786503</td><td> 22</td><td> 15</td><td> 32</td><td> 64</td><td> 80</td><td> 0.05</td>
Example 11: Evaluation of proinflammatory effects in hPBMC assay
Human IRF5 modified oligonucleotides were tested for potential immunostimulatory properties in an in vitro human peripheral blood mononuclear cell (PBMC) activation assay. Human PBMCs were isolated from fresh whole blood donated by healthy donors (with informed consent at US HealthWorks clinic, Carlsbad). Hie blood was collected into 8 mL Vacutainer CPT tubes that contained sodium citrate anticoagulant and Ficoll density media with polyester gel barrier separating those liquids. Following centrifugation of CPT tubes at 1215 rpm in Beckman Allegra 6R centrifuge, red blood cells and granulocytes were separated from plasma and PBMCs by polyester gel barrier. PBMCs accumulated at the interface between Ficoll and plasma, just above the polymer gel layer. Purified PBMCs were washed with PBS (Ca<sup>++</sup>, Mg<sup>++</sup> free), and resuspended in RPMI culture medium (RPMI containing 10% FBS and penicillin and streptomycin). Only PBMC preps with viability >80% were used for the assay. The average viability of the PBMC used in these assays was 86.6%.
For cultures, PBMC were plated at 5 x 10<sup>5</sup> cells/well in sterile, 96- round bottomed polypropylene plates. Cells were treated with increasing concentrations of modified oligonucleotides targeting human IRF5 (as indicated in tables below) and incubated for 24 hours at 37°C and 5% CO2. ION No. 353512 (3-14-3 MOE gapmer, TCCCATTTCAGGAGACCTGG, designated herein as SEQ ID NO: 35) is an internal standard known to be a high responder for IL-6 release in the assay. ION No. 104838 (5-10-5 MOE gapmer, GCTGATTAGAGAGAGGTCCC, designated herein as SEQ ID NO: 36) is an internal standard known to be a non-responder in the assay (a negative control). After a 24-hour incubation, plates were centrifuged at 330g for 5 min; supernatants were collected for MSD human Proinflammatory Panel l_V-plex (custom 4-plex) cytokine assay. Multiplex MSD cytokine assay was conducted following the manufacturer’s instructions to measure levels of IL-6, IL-10, and TNF-a in the supernatant. Electrochemiluminescence was measured using Sector Imager 2400 (Meso Scale Discovery) and data analyzed using MSD Discovery Workbench® software.
Levels of IL-6, IL-10 and TNF-a measured are presented in the Tables below. Many of the oligonucleotides tested were deemed tolerable. ION No. 729018 consistently elicited similar or less cytokine production than the negative control oligonucleotide.
Table 68
IL-6 levels following treatment of human PBMCs with modified oligonucleotides
<td rowspan="2"> Concentration (uM)</td><td colspan="10"> Compound No.</td>
<td> 728958</td><td> 729918</td><td> 785525</td><td> 785674</td><td> 785675</td><td> 786503</td><td> 786524</td><td> 786548</td><td> 353512</td><td> 104838</td>
<td> 0</td><td> 172</td><td> iii</td><td> 144</td><td> 148</td><td> 219</td><td> 193</td><td> 198</td><td> 194</td><td> 213</td><td> 205</td>
<td> 0.0128</td><td> 212</td><td></td><td> 211</td><td> 201</td><td> 245</td><td> 159</td><td> 189</td><td> 247</td><td> 198</td><td> 211</td>
<td> 0.064</td><td> 228</td><td> ii</td><td> 211</td><td> 211</td><td> 217</td><td> 207</td><td> 204</td><td> 184</td><td> 206</td><td> 307</td>
<td> 0.32</td><td> 264</td><td> 183</td><td> 301</td><td> 298</td><td> 292</td><td> 246</td><td> 212</td><td> 297</td><td> 381</td><td> 339</td>
<td> 1.6</td><td> 216</td><td></td><td> 355</td><td> 391</td><td> 376</td><td> 271</td><td> 208</td><td> 273</td><td> 332</td><td> 258</td>
<td> 8.0</td><td> 254</td><td> 243</td><td> 370</td><td> 353</td><td> 436</td><td> 341</td><td> 242</td><td> 290</td><td> 472</td><td> 297</td>
<td> 40.0</td><td> 326</td><td> iii</td><td> 456</td><td> 417</td><td> 491</td><td> 342</td><td> 217</td><td> 282</td><td> 470</td><td> 332</td>
<td> 200.0</td><td> 2709</td><td></td><td> 745</td><td> 502</td><td> 738</td><td> 446</td><td> 286</td><td> 452</td><td> 632</td><td> 524</td>
Table 69
IL-10 levels following treatment of human PBMCs with modified oligonucleotides
<td rowspan="2"> Concentration (uM)</td><td colspan="10"> Compound No.</td>
<td> 728958</td><td> 729018</td><td> 785525</td><td> 785674</td><td> 785675</td><td> 786503</td><td> 786524</td><td> 786548</td><td> 353512</td><td> 104838</td>
<td> 0</td><td> 7</td><td> 12</td><td> 6</td><td> 8</td><td> 10</td><td> 9</td><td> 9</td><td> 9</td><td> 8</td><td> 7</td>
<td> 0.0128</td><td> 7</td><td></td><td> 10</td><td> 8</td><td> 10</td><td> 7</td><td> 8</td><td> 8</td><td> 13</td><td> 6</td>
<td> 0.064</td><td> 27</td><td> IB</td><td> 9</td><td> 12</td><td> 13</td><td> 10</td><td> 8</td><td> 9</td><td> 43</td><td> 12</td>
<td> 0.32</td><td> 13</td><td> 15</td><td> 20</td><td> 28</td><td> 37</td><td> 25</td><td> 9</td><td> 14</td><td> 66</td><td> 24</td>
<td> 1.6</td><td> 10</td><td> ii</td><td> 40</td><td> 47</td><td> 55</td><td> 31</td><td> 13</td><td> 18</td><td> 52</td><td> 24</td>
<td> 8.0</td><td> 14</td><td> ii</td><td> 29</td><td> 43</td><td> 60</td><td> 34</td><td> 18</td><td> 20</td><td> 28</td><td> 21</td>
<td> 40.0</td><td> 9</td><td> ii</td><td> 11</td><td> 20</td><td> 27</td><td> 15</td><td> 21</td><td> 13</td><td> 11</td><td> 11</td>
<td> 200.0</td><td> 13</td><td> i</td><td> 7</td><td> 9</td><td> 9</td><td> 8</td><td> 15</td><td> 5</td><td> 8</td><td> 6</td>
Table 70
TNF-a levels following treatment of human PBMCs with modified oligonucleotides
<td rowspan="2"> Concentration (uM)</td><td colspan="10"> Compound No.</td>
<td> 728958</td><td> 729018</td><td> 785525</td><td> 785674</td><td> 785675</td><td> 786503</td><td> 786524</td><td> 786548</td><td> 353512</td><td> 104838</td>
<td> 0</td><td> 11</td><td> 10</td><td> 9</td><td> 9</td><td> 11</td><td> 10</td><td> 10</td><td> 11</td><td> 12</td><td> 12</td>
<td> 0.0128</td><td> 9</td><td> 10</td><td> 11</td><td> 12</td><td> 12</td><td> 14</td><td> 10</td><td> 11</td><td> 11</td><td> 11</td>
<td> 0.064</td><td> 15</td><td> ii</td><td> 10</td><td> 10</td><td> 10</td><td> 10</td><td> 9</td><td> 10</td><td> 14</td><td> 12</td>
<td> 0.32</td><td> 16</td><td> 11</td><td> 13</td><td> 12</td><td> 13</td><td> 11</td><td> 8</td><td> 11</td><td> 17</td><td> 14</td>
<td> 1.6</td><td> 11</td><td></td><td> 19</td><td> 16</td><td> 17</td><td> 15</td><td> 10</td><td> 13</td><td> 22</td><td> 15</td>
<td> 8.0</td><td> 13</td><td> 14</td><td> 25</td><td> 20</td><td> 25</td><td> 20</td><td> 12</td><td> 15</td><td> 35</td><td> 20</td>
<td> 40.0</td><td> 22</td><td> 1</td><td> 40</td><td> 32</td><td> 35</td><td> 26</td><td> 16</td><td> 19</td><td> 41</td><td> 28</td>
<td> 200.0</td><td> 92</td><td> IB</td><td> 115</td><td> 50</td><td> 63</td><td> 36</td><td> 24</td><td> 29</td><td> 89</td><td> 55</td>
Example 12: Dose-dependent inhibition of human IRF5 in A-431 cells by modified oligonucleotides
Modified oligonucleotides described in the studies above exhibiting significant in vitro inhibition of
IRF5 RNA were selected and tested at various doses in Human A-431 cells.
Cultured A-431 cells at a density of 10,000 cells per well were treated using free uptake with modified oligonucleotides diluted to different concentrations as specified in the Tables below. After a treatment period of approximately 48 hours, IRF5 mRNA levels were measured as previously described using the Human IRF5 primer-probe set RTS4524. IRF5 mRNA levels were adjusted according to total RNA content, as measured by RIBOGREEN®. Results are presented in the tables below as percent inhibition of IRF5, relative to untreated control cells. The half maximal inhibitory concentration (IC50) of each modified oligonucleotide is also presented.
Table 71
Multi-dose assay of modified oligonucleotides in A-431 cells
<td rowspan="2"> Compound No.</td><td colspan="8"> % Inhibition</td><td rowspan="2"> IC50 (μΜ)</td>
<td> 4.57 nM</td><td> 13.72 nM</td><td> 41.15 2nM</td><td> 123.45 7nM</td><td> 370.37 nM</td><td> 1111.11 1 nM</td><td> 3333.33 nM</td><td> 10000.0 nM</td>
<td> 729018</td><td> i</td><td> 11</td><td> 41</td><td> 11</td><td> 77</td><td> 83</td><td> 11</td><td> H</td><td> 0,1</td>
<td> 786503</td><td> 0</td><td> 2</td><td> 26</td><td> 57</td><td> 71</td><td> 82</td><td> 88</td><td> 89</td><td> 0.1</td>
<td> 786524</td><td> 0</td><td> 10</td><td> 28</td><td> 53</td><td> 78</td><td> 85</td><td> 88</td><td> 89</td><td> 0.1</td>
Example 13: Design and dose-dependent inhibition of modified oligonucleotides targeting human IRF5
Modified oligonucleotides with additional chemistry modifications were designed overlapping the active sites of 729018, 786503, and 785675, which were selected based on studies above. The newly designed oligonucleotides were tested for in vitro inhibition of human IRF5 mRNA in human A-431 cells. Several different chemistry modifications were tested, which are specified in the Chemistry Notation column of the tables below, wherein the notation “d” refers to a 2’-deoxyribose sugar, the notation “s” refers to a phosphorothioate intemucleoside linkage, the notation “k” refers to a cEt modified sugar, the notation “y” refers to a 2'-0-methyl ribose sugar, the notation “MOP” refers to a methoxypropyl phosphonate intemucleoside linkage, and the notation “<sup>m</sup>C” refers to a 5-methyl cytosine. In some instances, the thymine was replaced by uracil.
Table 72
List of modified oligonucleotides designed for dose-dependent inhibition study
<td> Compound No.</td><td> SEQ ID NO: 2 Start Site</td><td> Sequence (5' to 3')</td><td> Chemistry Notation</td><td> SEQ ID NO</td>
<td> 785675</td><td> 4366</td><td> TGTCTAGTGTCATGGA</td><td> Tk<sub>S</sub>GksTd<sub>S</sub><sup>m</sup>CdsTdSAdSGdsTdSGdsTdS<sup>m</sup>CdsAeST<sub>es</sub>GesGksAk</td><td> 1340</td>
<td> 1073764</td><td> 4366</td><td> TGTCTAGTGTCATGGA</td><td> TksGksTd<sub>S</sub><sup>m</sup>CksTdSAdSGdsTdSGdsTdS<sup>m</sup>CdsAeST<sub>es</sub>GesGksAk</td><td> 1340</td>
<td> 1073765</td><td> 4366</td><td> TGTCTAGTGTCATGGA</td><td> Tk<sub>S</sub>GksTd<sub>S</sub><sup>m</sup>CdsTkSAdSGdsTdSGdsTdS<sup>m</sup>CdsAeST<sub>es</sub>GesGksAk</td><td> 1340</td>
<td> 1073766</td><td> 4366</td><td> TGTCTAGTGTCATGGA</td><td> Tk<sub>S</sub>GksTd<sub>S</sub><sup>m</sup>CdM0pTdSAdSGdsTdSGdsTdS<sup>m</sup>CdsAesTe<sub>S</sub>GesGksAk</td><td> 1340</td>
<td> 1073767</td><td> 4366</td><td> TGTCTAGTGTCATGGA</td><td> Tk<sub>S</sub>GksTd<sub>S</sub><sup>m</sup>CdsTdM0pAdSGdsTdSGdsTdS<sup>m</sup>CdsAesTe<sub>S</sub>GesGksAk</td><td> 1340</td>
<td> 1073768</td><td> 4366</td><td> TGTCTAGTGTCATGGA</td><td> TksGksTd<sub>S</sub>Cy<sub>S</sub>Td<sub>S</sub>Ad<sub>S</sub>GdsTd<sub>S</sub>GdsTd<sub>S</sub><sup>m</sup>CdsAe<sub>S</sub>T<sub>es</sub>GesGksAk</td><td> 1340</td>
<td> 1073769</td><td> 4366</td><td> TGTCUAGTGTCATGGA</td><td> Tk<sub>S</sub>GksTd<sub>S</sub><sup>m</sup>CdsUySAdSGdsTdsGdsTds<sup>m</sup>CdsAeST<sub>es</sub>GesGksAk</td><td> 1356</td>
<td> 786503</td><td> 11736</td><td> CTGATATGATACCTAA</td><td><sup>m</sup>CksTkSGksAdSTdSAdSTdSGdsAdSTdSAds<sup>m</sup>Cds<sup>m</sup>CdsTksAkSAk</td><td> 1270</td>
<td> 1072783</td><td> 11736</td><td> CTGATATGATACCTAA</td><td><sup>m</sup>CksTkSGksAdSTkSAdSTdSGdsAdSTdSAdS<sup>m</sup>Cds<sup>m</sup>CdsTksAkSAk</td><td> 1270</td>
<td> 1072784</td><td> 11736</td><td> CTGATATGATACCTAA</td><td><sup>m</sup>CksTkSGksAdSTdSAkSTdSGdsAdSTdSAdS<sup>m</sup>Cds<sup>m</sup>CdsTksAkSAk</td><td> 1270</td>
<td> 1072785</td><td> 11736</td><td> CTGATATGATACCTAA</td><td><sup>m</sup>CksTksGksAdSTdM0pAdsTdSGdsAdSTdSAdS<sup>m</sup>Cds<sup>m</sup>CdsTkSAk<sub>S</sub>Ak</td><td> 1270</td>
<td> 1072786</td><td> 11736</td><td> CTGATATGATACCTAA</td><td><sup>m</sup>CksTkSGksAdSTdSAdM0pTdSGdsAdSTdSAdS<sup>m</sup>Cds<sup>m</sup>CdsTkSAk<sub>S</sub>Ak</td><td> 1270</td>
<td> 1072788</td><td> 11736</td><td> CTGATATGATACCTAA</td><td><sup>m</sup>CksTksGksAdSTdSAySTdSGdsAdSTdSAdS<sup>m</sup>Cds<sup>m</sup>CdsTksAkSAk</td><td> 1270</td>
<td> 1072787</td><td> 11736</td><td> CTGAUATGATACCTAA</td><td><sup>m</sup>CksTkSGksAdSUySAdSTdSGdsAdSTdSAds<sup>m</sup>Cds<sup>m</sup>CdsTkSAk<sub>S</sub>Ak</td><td> 1355</td>
<td></td><td> 11111</td><td> TCTGATATGATACCTA</td><td> TksXdjsTkkGdsAtfeTdsAifsTdsGdsAdsTdsAds^'Cds^'C-ksTisAk</td><td> 228</td>
<td> 1072777</td><td> 11737</td><td> TCTGATATGATACCTA</td><td> Tks<sup>m</sup>CksTkSGdsAkSTdSAdSTdSGdsAdSTdSAds<sup>m</sup>Cds<sup>m</sup>CksTkSAk</td><td> 228</td>
<td> 1072778</td><td> 11737</td><td> TCTGATATGATACCTA</td><td> Tks<sup>m</sup>CksTkSGdsAdSTkSAdSTdSGdsAdSTdSAds<sup>m</sup>Cds<sup>m</sup>CksTkSAk</td><td> 228</td>
<td> 1072779</td><td> 11737</td><td> TCTGATATGATACCTA</td><td> Tks<sup>m</sup>CksTkSGdsAdM0pTdsAdsTdsGdsAdSTdSAdS<sup>m</sup>Cds<sup>m</sup>CksTkSAk</td><td> 228</td>
<td> 1072780</td><td> 11737</td><td> TCTGATATGATACCTA</td><td> Tks<sup>m</sup>CksTkSGdsAdSTdM0pAdsTdSGdsAdSTdSAdS<sup>m</sup>Cds<sup>m</sup>CksTkSAk</td><td> 228</td>
<td> 1072781</td><td> 11737</td><td> TCTGATATGATACCTA</td><td> Tks<sup>m</sup>CksTkSGdsAySTdSAdSTdSGdsAdSTdSAds<sup>m</sup>Cds<sup>m</sup>CksTkSAk</td><td> 228</td>
<td> 1072782</td><td> 11737</td><td> TCTGAUATGATACCTA</td><td> Tks<sup>m</sup>CksTkSGdsAdSUySAdSTdSGdsAdSTdSAds<sup>m</sup>Cds<sup>m</sup>CksTkSAk</td><td> 1354</td>
Cultured A-431 cells at a density of 10,000 cells per well were treated using free uptake with modified oligonucleotides diluted to different concentrations as specified in the Tables below. After a treatment period of approximately 72 hours, IRF5 mRNA levels were measured using the Human IRF5 primer-probe set 5 RTS4524. IRF5 RNA levels were adjusted according to total RNA content, as measured by RIBOGREEN®.
Results are presented as percent inhibition of IRF5 relative to untreated control cells. As used herein, a value of ‘0’ indicates that treatment with the modified oligonucleotide did not inhibit IRF5 mRNA levels.
The half maximal inhibitory concentration (IC50) of each modified oligonucleotide is also presented. IC50 was calculated using a linear regression on a log/linear plot of the data in excel. Data below shows that 10 729018 shows significant activity against human IRF5 compared to all other modified oligonucleotides tested.
Table 73
Multi-dose assay of modified oligonucleotides in A-431 cells
<td rowspan="2"> Compound No.</td><td colspan="6"> % Inhibition</td>
<td> 4.12 nM</td><td> 12.25 nM</td><td> 37.04 nM</td><td> 111.11 nM</td><td> 333.33 nM</td><td> 1000 nM</td>
<td> 729018</td><td> i</td><td> ii</td><td> 54</td><td> 78</td><td> 89</td><td> B</td>
<td> 1072777</td><td> 0</td><td> 7</td><td> 43</td><td> 65</td><td> 81</td><td> 85</td>
<td> 1072778</td><td> 4</td><td> 8</td><td> 36</td><td> 54</td><td> 69</td><td> 74</td>
<td> 1072779</td><td> 10</td><td> 14</td><td> 43</td><td> 66</td><td> 80</td><td> 87</td>
<td> 1072780</td><td> 10</td><td> 6</td><td> 38</td><td> 56</td><td> 71</td><td> 77</td>
<td> 1072781</td><td> 1</td><td> 8</td><td> 35</td><td> 57</td><td> 77</td><td> 81</td>
<td> 1072782</td><td> 0</td><td> 12</td><td> 35</td><td> 58</td><td> 79</td><td> 83</td>
<td> 786503</td><td> 13</td><td> 29</td><td> 54</td><td> 80</td><td> 88</td><td> 90</td>
<td> 1072783</td><td> 20</td><td> 29</td><td> 38</td><td> 64</td><td> 83</td><td> 83</td>
<td> 1072784</td><td> 18</td><td> 23</td><td> 41</td><td> 63</td><td> 80</td><td> 75</td>
<td> 1072785</td><td> 11</td><td> 22</td><td> 29</td><td> 56</td><td> 76</td><td> 78</td>
<td> 1072786</td><td> 0</td><td> 15</td><td> 25</td><td> 54</td><td> 71</td><td> 71</td>
<td> 1072787</td><td> 6</td><td> 23</td><td> 41</td><td> 64</td><td> 82</td><td> 82</td>
<td> 1072788</td><td> 1</td><td> 14</td><td> 31</td><td> 56</td><td> 74</td><td> 79</td>
<td> 785675</td><td> 0</td><td> 0</td><td> 24</td><td> 44</td><td> 59</td><td> 69</td>
<td> 785675</td><td> 4</td><td> 2</td><td> 28</td><td> 44</td><td> 60</td><td> 74</td>
<td> 1073764</td><td> 0</td><td> 5</td><td> 6</td><td> 24</td><td> 23</td><td> 41</td>
<td> 1073765</td><td> 0</td><td> 0</td><td> 9</td><td> 17</td><td> 13</td><td> 29</td>
<td> 1073766</td><td> 0</td><td> 15</td><td> 10</td><td> 39</td><td> 58</td><td> 75</td>
<td> 1073767</td><td> 2</td><td> 11</td><td> 4</td><td> 8</td><td> 18</td><td> 32</td>
<td> 1073768</td><td> 0</td><td> 11</td><td> 5</td><td> 15</td><td> 25</td><td> 33</td>
<td> 1073769</td><td> 0</td><td> 7</td><td> 10</td><td> 26</td><td> 46</td><td> 62</td>
Contents3
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Numbers
- Publication
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- Publication, DOCDB
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Titles2
- Hebrew
- מאפננים של ביטוי IRF5
- English
- MODULATORS OF IRF5 EXPRESSION
Classification
- CPC, 14
- C12N15/113
- C12N15/11
- C12N2310/11
- C12N2310/315
- C12N2310/312
- C12N2310/3231
- C12N2310/3341
- C12N2310/341
- A61P1/04
- C12N2310/321
- C12N2310/3521
- C07H21/00
- A61K31/7105
- A61P1/00
- IPC, 3
- A61P01 04
- C12N15 11
- C12N15 113
