Conjugated factor viii molecules

jinnisn viii οίι> Jiibipbitt

Conjugated factor VIII molecules

Novo Nordisk A/S C. 203069 WO 2009/108806 PCT/US2009/035339

CONJUGATED FACTOR VIII MOLECULES

Field of the invention [0001] The present invention relates to conjugated coagulation Factor VIII molecules. In particular, the present invention relates to conjugated Factor VIII molecules having a modified circulatory half life.

Background of the invention (0002] Haemophilia A is an inherited bleeding disorder caused by deficiency or dysfunction of coagulation Factor VIII (FVIII) activity. The clinical manifestation is not on primary haemostasis -formation of the blood clot occurs normally - but the clot is unstable due to a lack of secondary thrombin formation. The disease is treated by intravenous injection of coagulation Factor FVIII which is either isolated from blood or produced recombinantly. (0003] Current treatment recommendations are moving from traditional on-demand treatment towards prophylaxis. The circulatory half life of endogenous FVIII is 12-14 hours and prophylactic treatment is thus to be performed several times a week in order to obtain a virtually symptom-free life for the patients. IV administration is for many, especially children and young persons, associated with significant inconvenience and/or pain. There is thus a need in the art for novel Factor VIII products with Factor VIII activity that are preferably homogenous in structure, preferably safe and preferably having a significantly prolonged circulatory half life in order to reduce the number of Factor VIII administration per week. There is furthermore a need in the art for relatively simple methods for obtaining and producing such molecules. (0004] PEGylation of Factor VIII in order to prolong circulatory half life is known in the art. It has however been an obstacle to obtain safe products having a homogenous structure as well as a significantly improved circulatory half life. The available methods of producing conjugated Factor VIII molecules are often laborious, and/or tend to result in low yields and/or products that arc not homogenous in structure. The use of artificially engineered O-linked glycosylation sites for obtaining therapeutic proteins having a prolonged circulatory half life of therapeutic proteins has been suggested in W02008011633, however, no conjugated Factor VIII molecules are disclosed therein.

Summary of the invention |0005] In a first aspect, the present invention relates to a B domain truncated Factor VIII molecule with a modified circulatory half life, said molecule being covalently conjugated with a hydrophilic polymer via an O-linkcd oligosaccharide in the truncated B domain, wherein Factor VIII activation results in removal of the covalently conjugated side group. 1 WO 2009/108806 PCT/US2009/035339 |0006] In other aspects, the present invention furthermore relates to methods for obtaining such molecules, use of such molecules and pharmaceutical compositions comprising such molecules.

[00071 What is thus provided is a conjugated Factor VIII molecule with modified circulatory half life, wherein the conjugated side group (e.g. hydraphilic polymer) is removed upon activation. The molecules according to the invention are preferably homogenous in structure - at least with regard to position of the hydrophilic polymer in the truncated B-domain - and preferably have an advantageous safety profile. Likewise, relatively simple methods for obtaining such molecules are furthermore provided herein. Preferably, activated Factor VIII molecules according to the invention are similar to endogenous activated Factor VIII.

Detailed description of the invention

Definitions: |0008] Factor VIII molecules: FVIII/Factor VIII is a large, complex glycoprotein that primarily is produced by hepatocytes. FVII1 consists of 2351 amino acids, including signal peptide, and contains several distinct domains, as defined by homology. There are three A-domains, a unique B-domain, and two C-domains. The domain order can be listed as NH2-A1-A2-B-A3-C1-C2-COOH. FVIII circulates in plasma as two chains, separated at the B-A3 border. The chains are connected by bivalent metal ion-bindings. The A1-A2-B chain is termed the heavy chain (HC) while the A3-C1-C2 is termed the light chain (LC).

[0009] Endogenous Factor VIII molecules circulate in vivo as a pool of molecules with B domains of various sizes. What probably occurs in vivo is a gradual enzymatic removal of the B domain resulting in a pool of molecules with B-domains of various sizes. It is generally believed that cleavage at position 740, by which the last part of the B-domain is removed, occurs in connection with thrombin activation. However, it cannot be ruled out that a Factor VI11 variant in which e.g. the cleavage site at position 740 has been impaired may be active.

[0010] “Factor VIII” or “FVIII” as used herein refers to a human plasma glycoprotein that is a member of the intrinsic coagulation pathway and is essential to blood coagulation. “Native FVIII” is the full length human FVIII molecule as shown in SEQ ID NO. 1 (amino acid 1-2332). The B-domain spans amino acids 741-1648 in SEQ ID NO 1. 2 WO 2009/108806 PCT/US2009/035339 [0011] SEQ ID NO 1:

ATRRYYLGAVELSWDYMQSDLGELPVDARFPPRVPKSFPFNTSWYKKTLFVEFTDHLFNIA

KPRPPWMGLLGPTIQAEVYDTW1TLKNMASHPVSLHAVGVSYWKASEGAEYDDQTSQREK

EDDKVFPGGSHTYVWQVLKENGPMASDPLCLTYSYLSHVDLVKDLNSGLJGALLVCREGSL

AKEKTQTLHKFILLFAVFDEGKSWHSETKNSLMQDRDAASARAWPKMHTVNGYVNRSLPG

L1GCHRKSVYWHV1GMGTTPEVHS1FLEGHTFLVRNHRQASLE1SP1TFLTAQTLLMDLGQFLL FCHISSHQHDGMEAYVKVDSCPEEPQLRMKNNEEAEDYDDDLTDSEMDVVRFDDDNSPSF1

QIRSVAKKHPKTWVHY1AAEEEDWDYAPLVLAPDDRSYKSQYLNNGPQRIGRKYKKVRFM

AYTDETFKTREA1QHESGJLGPLLYGEVGDTLLIIFKNQASRPYNIYPHGITDVRPLYSRRLPKG

VKHLKDFPILPGEIFKYKWTVTVEDGPTKSDPRCLTRYYSSFVNMERDLASGLIGPLLICYKES

VDQRGNQIMSDKRNVILFSVFDENRSWYLTENIQRFLPNPAOVQLEDPEFQASNIMHSINGYV

FDSLQLSVCLHEVAYWYILSIGAQTDFLSVFFSGYTFKHKMVYEDTLTLFPFSGETVFMSMEN

PGLWILGCHNSDFRNRGMTALLKVSSCDK.NTGDYYEDSYED1SAYLLSKNNAIEPRSFSQNSR

HPSTRQKQFNATTIPENDIEKTDPWFAHRTPMPfGQNVSSSDLLMLLRQSPTPHGLSLSDLQEA

KYETFSDDPSPGAIDSNNSLSEMTHFRPQLHHSGDMVFTPESGLQLRLNEKLGTTAATELKRL

DFKVSSTSNNUST1PSDNLAAGTDNTSSLGPPSMPVHYDSQLDTTLFGKKSSPLTESGGPLSLS

EENNDSKLLESGLMNSQESSWGKNVSSTESGRLFKGKRAHGPALLTKDNALFKVSISLLKTN

KTSNNSATNRKTHIDGPSLLIENSPSVWQNILESDTEFKKVTPLIHDRMLMDKNATALRLNH

MSNKTTSSKNMEMVQQKXEGPIPPDAQNPDMSFFKMLFLPESARWIQRTHGKNSLNSGQGP

SPKQLVSLGPEKSVEGQNFLSEKNKVWGKGEFTKDVGLKEMVFPSSRNLFLTNLDNLHENN

THNQEKKJQEEIEKKETLIQENVVLPQIHTVTGTKNFMKNLFLLSTRQNVEGSYDGAYAPVLQ

DFRSLNDSTNRTKKHTAHFSKKGEEENLEGLGNQTKQIVEKYACITRISPNTSQQNFVTQRSK

RALKQFRLPLEETELEKR1IVDDTSTQWSKNMKHLTPSTLTQ1DYNEKEKGA1TQSPLSDCLTR

SHS1PQANRSPLPIAKVSSFPSIRPTYLTRVLFQDNSSHLPAASYRKKDSGVQESSHFLQGAKRN

NLSLA1LTLEMTGDQREVGSLGTSATNSVTYKKVENTVLPK.PDLPKTSGKVELLPKVHJYQK

DLFPTETSNGSPGHLDLVEGSLLQGTEGA1KWNEANRPGKVPFLRVATESSAKTPSKLLDPLA

WDNHYGTQIPKEEWKSQEKSPEKTAFKKKDT1LSLNACESNHA1AA1NEGQNKPE1EVTWAK

QGRTERLCSQNPPVLKRHQREITRTTLQSDQEEIDYDDT1SVEMRKEDFD1YDEDENQSPRSFQ

KKTRHYFIAAVERLWDYGMSSSPHVLRNRAQSGSVPQFKKWFQEFTDGSFTQPLYRGELNE

HLGLLGPY1RAEVEDNIMVTFRNQASRPYSFYSSLISYEEDQRQGAEPRKNFVKPNETKTYFW

KVQHHMAPTKDEFDCKAWAYFSDVDLEKDVHSGLIGPLLVCHTNTLNPAHGRQVTVQEFA

LFFTIFDETKSWYFTENMERNCRAPCN1QMEDPTFKENYRFHAINGYIMDTLPGLVMAQDQRI

RWYLLSMGSNENIHSIHFSGHVFTVRKKEEYKMALYNLYPGVFETVEMLPSKAG1WRVECLI

GEHLHAGMSTLFLVYSNKCQTPLGMASGHIRDFQITASGQYGQWAPKLARLHYSGSINAWS

TKEPFSWIKVDLLAPMI1HGIKTQGARQKFSSLY1SQFIIMYSLDGKKWQTYRGNSTGTLMVFF

GNVDSSG1KHNIFNPPUARYIRLHPTHYS1RSTLRMELMGCDLNSCSMPLGMESKAISDAQ1TA

SSYFTNMFATWSPSKARLHLQGRSNAWRPQVNNPREWLQVDFQKTMKVTGVTTQGVKSLL

TSMYVKEFLISSSQDGHQWTLFFQNGKVKVFQGNQDSFTPWNSLDPPLLTRYLRIHPQSWV

HQIALRMEVLGCEAQDLY

[0012] The Factor VIII molecules according to the present invention are B domain truncated Factor FVin molecules wherein the remaining domains correspond to the sequence as set forth in amino acid no 1-740 and 1649-2332 in SEQ ID NO. 1. It follows that molecules according to the invention are recombinant molecules produced in transformed host cells, preferably of mammalian origin.

However, the remaining domains (i.e. the three A-domains and the two C-domains) may differ slightly e.g. about 1%, 2%, 3%, 4% or 5% from the amino acid sequence as set forth in SEQ ID NO 1 (amino acids 1-740 and 1649-2332). In particular, it is plausible that amino acid modifications (substitutions, deletions, etc.) are introduced in the remaining domains e.g. in order to modify the binding capacity of Factor VIII with various other components such as e.g. vW factor, LPR, various 3 WO 2009/108806 PCT/US2009/035339 receptors, other coagulation factors, cell surfaces, etc. Furthermore, it is plausible that the Factor VI11 molecules according to the invention comprise other post-translational modifications in e.g. the truncated B-domain and/or in one or more of the other domains of the molecules. These other post-translational modifications may be in the form of various molecules conjugated to the Factor VIII molecule according to the invention such as e.g. polymeric compounds, pcpttdic compounds, fatty acid derived compounds, etc.

[0013] Factor VIII molecules according to the present invention, regardless of whether they are modified outside the B domain or not, have other posttranslational modifications or not, all have Factor VIII activity, meaning the ability to function in the coagulation cascade in a manner functionally similar or equivalent to FV1I1, induce the formation of FXa via interaction with FIXa on an activated platelet, and support the formation of a blood clot. The activity can be assessed in vitro by techniques well known in the art such as e.g. clot analysis, endogenous thrombin potential analysis, etc. Factor VIII molecules according to the present invention have FVI1I activity being at least about 10%, at least 20%, at least 30%, at least 40%, at least 50%, at least 60%, at least 70%, at least 80%, at least 90%, and 100% or even more than 100% of that of native human FVIII.

[0014] B domain: The B-domain in Factor VIII spans amino acids 741-1648 in SEQ ID NO 1. The B-domain is cleaved at several different sites, generating large heterogeneity in circulating plasma FVIII molecules. The exact function of the heavily glycosylated B-domain is unknown. What is known is that the domain is dispensable for FVIII activity in the coagulation cascade. This apparent lack of function is supported by the fact that B domain dcletcd/truncated FVIII appears to have in vivo properties identical to those seen for full length native FVIII. That being said there are indications that the B-domain may reduce the association with the cell membrane, at least under serum free conditions.

[0015] B domain truncated/deleted Factor VIII molecule: Endogenous full length FVIII is synthesized as a single-chain precursor molecule. Prior to secretion, the precursor is cleaved into the heavy chain and the light chain. Recombinant B domain-deleted FVIII can be produced from two different strategies. Either the heavy chain without the B-domain and the light chain are synthesized individually as two different polypeptide chains (two-chain strategy) or the B-domain deleted FVIII is synthesized as a single precursor polypeptide chain (single-chain strategy) that is cleaved into the heavy and light chains in the same way as the full-length FVIII precursor.

[0016] In a B domain-deleted FVIII precursor polypeptide, the heavy and light chain moieties are normally separated by a linker. To minimize the risk of introducing immunogenic epitopes in the B domain-deleted FVIII, the sequence of the linker is preferable derived from the FVIII B-domain. The 4 WO 2009/108806 PCT/US2009/035339 linker must comprise a recognition site for the protease that separates the B domain-deleted FVIII precursor polypeptide into the heavy and light chain. In the B domain of full length FVIII, amino acid 1644-1648 constitutes this recognition site. The thrombin site leading to removal of the linker on activation of B domain-deleted FVIII is located in the heavy chain. Thus, the size and amino acid sequence of the linker is unlikely to influence its removal from the remaining FVIII molecule by thrombin activation. Deletion of the B domain is an advantage for production of FVIII. Nevertheless, parts of the B domain can be included in the linker without reducing the productivity. The negative effect of the B domain on productivity has not been attributed to any specific size or sequence of the B domain.

[0017] The truncated B-domain may contain several O-glycosylation sites. However, according to a preferred embodiment, the molecule comprises only one, alternatively two, three or four O-linkcd oligosaccharides in the truncated B-domain.

[00181 According to a preferred embodiment, the truncated B domain comprises only one potential O-glycosylation site and the hydrophilic polymer is covalently conjugated to this O-glycosylation site.

[00191 The O-linked oligosaccharides in the B-domain truncated molecules according to the invention may be attached to O-glycosylation sites that were either artificially created by recombinant means and/or by exposure of “hidden” O-glycosylation sites by truncation of the B-domain. In both cases, such molecules may be made by designing a B-domain trunctated Factor VIII amino acid sequence and subsequently subjecting the amino acid sequence to an in silico analysis predicting the probability of O-glycosylation sites in the truncated B-domain. Molecules with a relatively high probability of having such glycosylation sites can be synthesized in a suitable host cell followed by analysis of the glycosylation pattern and subsequent selection of molecules having O-linked glycosylation in the truncated B-domain. Suitable host cells for producing recombinant Factor Vlll protein are preferably of mammalian origin in order to ensure that the molecule is glycosylated. In practicing the present invention, the cells arc mammalian cells, more preferably an established mammalian cell line, including, without limitation, CHO (e.g., ATCC CCL 61), COS-1 (e.g., ATCC CRL 1650), baby hamster kidney (BHK), and HEK293 (e.g., ATCC CRL 1573; Graham ct al., J. Gen. Virol. 36:59-72, 1977) cell lines. A preferred BHK cell line is the tk- ts 13 BHK cell line (Waechter and Baserga, Proc.Natl.Acad.Sci.USA 79:1106-1110, 1982), hereinafter referred to as BHK 570 cells. The BHK 570 cell line is available from the American Type Culture Collection, 12301 Parklawn Dr., Rockville, MD 20852, under ATCC accession number CRL 10314. A tk- ts!3 BHK cell line is also available from the ATCC under accession number CRL 1632. A preferred CHO cell line is the CHO K1 cell line available from ATCC under accession number CC161 as well as cell lines CHO-DXB11 and CHO-DG44. 5 WO 2009/108806 PCT/LS2009/035339 [0020] Other suitable cell lines include, without limitation, Rat Hep I (Rat hepatoma; ATCC CRL 1600), Rat Hep II (Rat hepatoma; ATCC CRL 1548), TCMK (ATCC CCL 139), Human lung (ATCC HB 8065), NCTC 1469 (ATCC CCL 9.1); DUKX cells (CHO cell line) (Urlaub and Chasin, Proc, Natl. Acad, Sci. USA 77:4216-4220, 1980) (DUKX cells also being referred to as DXB11 cells), and DG44 (CHO cell line) (Cell, 33: 405, 1983, and Somatic Cell and Molecular Genetics 12: 555, 1986). Also useful are 3T3 cells, Namalwa cells, myelomas and fusions of myelomas with other cells. In some embodiments, the cells may be mutant or recombinant cells, such as, e.g., cells that express a qualitatively or quantitatively different spectrum of enzymes that catalyze post-translational modification of proteins (e.g., glycosylation enzymes such as glycosyl transferases and/or glycosidases, or processing enzymes such as propeptides) than the cell type from which they were derived. DUKX cells (CHO cell line) are especially preferred.

[0021 ] Currently preferred cells are HEK293, COS, Chinese Hamster Ovary (CHO) cells, Baby Hamster Kidney (BHK) and myeloma cells, in particular Chinese Hamster Ovary (CHO) cells.

[0022] The inventors of the present invention have thus shown that it is possible to activate “hidden” O-glycosylation sites in the Factor VIII B-domain by truncating the B-domain. While not wishing to be bound by any theory, this phenomenon could be attributable to the tertiary structure of the molecule in the truncated B-domain being altered. “Hidden” O-glycosylation sites arc thus “made accessible” to glycosylation in the truncated B-domain. One advantage of this approach is the provision of recombinant molecules with an advantageous safety profile with respect to e.g. allergenicity. Another advantage could be that it may represent a simpler approach of obtaining B-domain truncated variants with an O-linked oligosaccharide in the B-domain due to the inherent abundance of glycosylation sites in the B-domain as it has previously proven difficult to engineer artificial O-glycosylation sites in recombinant proteins.

[0023] The length of the B domain in the wt FVI11 molecule is about 907 amino acids. The length of the truncated B domain in molecules according to the present invention may vary from about 10 amino acids to about 700 acids, such as e.g. about 12-500 amino acids, 12-400 amino acids, 12-300 amino acids, 12-200 amino acids, 15-100 amino acids, 15-75 amino acids, 15-50 amino acids, 15-45 amino acids, 20-45 amino acids, 20-40 amino acids, or 20-30 amino acids. The truncated B-domain may comprise fragments of the heavy chain and/or the light chain and/or an artificially introduced sequence that is not found in the wt FVIII molecule. The terms “B-domain truncated” and “B-domain deleted” may be used interchangeably herein. 6 WO 2009/108806 PCT/US2009/035339 [0024] Modified circulatory half life: Molecules according to the present invention have a modified circulatory half life compared to the wild type Factor VII1 molecule, preferably an increased circulatory half life. Circulatory half life is preferably increased at least 10%, preferably at least 15%, preferably at least 20%, preferably at least 25%, preferably at least 30%, preferably at least 35%, preferably at least 40%, preferably at least 45%, preferably at least 50%, preferably at least 55%, preferably at least 60%, preferably at least 65%, preferably at least 70%, preferably at least 75%, preferably at least 80%, preferably at least 85%, preferably at least 90%, preferably at least 95%, preferably at least 100%, more preferably at least 125%, more preferably at least 150%, more preferably at least 175%, more preferably at least 200%, and most preferably at least 250% or 300%. Even more preferably, such molecules have a circulatory half life that is increased at least 400%, 500%, 600%, or even 700% relative to the circulatory half life of the wild type FV1J1.

[0025J Hydrophilic polymer: The modifying group/hydrophilic polymer according to the present invention is preferably non-naturally occurring. In one example, the "non-naturally occurring modifying group" is a polymeric modifying group, in which at least one polymeric moiety is non-naturally occurring. In another example, the non-naturally occurring modifying group is a modified carbohydrate. The locus of functionalization with the modifying group is selected such that it docs not prevent the "modified sugar" from being added enzymatically to a polypeptide. "Modified sugar" also refers to any glycosyl mimetic moiety that is functionalized with a modifying group and which is a substrate for a natural or modified enzyme, such as a glycosyltransfcrase. (00261 The polymeric modifying group added to a polypeptide can alter a property of such polypeptide, for example, its bioavailability, biological activity or its half-life in the body. Exemplary polymers according to the invention include water-soluble polymers that can be linear or branched and can include one or more independently selected polymeric moieties, such as poly(alkylcne glycol) and derivatives thereof. The polymeric modifying group according to the invention may include a water-soluble polymer, e.g. poly (ethylene glycol) and derivatives thereof (PEG, m-PEG), polypropylene glycol) and derivatives thereof (PPG, m-PPG) and the like.

[0027] The term "water-soluble" refers to moieties that have some detectable degree of solubility in water. Methods to detect and/or quantify water solubility are well known in the art. Exemplary water-soluble polymers according to the invention include peptides, saccharides, poly(ethers), poly(amines), poly(carboxylic acids) and the like. Peptides can have mixed sequences and be composed of a single amino acid, e.g., poly(lysine). An exemplaiy polysaccharide is poly(sialic acid). An exemplary poly(cther) is polyethylene glycol), e.g., m-PEG. Polyethylene imine) is an exemplary polyaminc, and poly(acrylic) acid is a representative polyparboxylic acid). 7 WO 2009/108806 PCT/US2009/035339 [00281 The polymer backbone of the water-soluble polymer according to the invention can be polyethylene glycol) (i.e. PEG). The term PEG in connection with the present invention includes polyethylene glycol) in any of its forms, including alkoxy PEG, difunctional PEG, multiarmed PEG, forked PEG, branched PEG, pendent PEG (i.e. PEG or related polymers having one or more functional groups pendent to the polymer backbone), or PEG with degradable linkages therein.

[0029) The polymer backbone can be linear or branched. Branched polymer backbones are generally known in the art Typically, a branched polymer has a central branch core moiety and a plurality of linear polymer chains linked to the central branch core. PEG is commonly used in branched forms that can be prepared by addition of ethylene oxide to various polyols, such as glycerol, pentaeiythritol and sorbitol. The central branch moiety can also be derived from several amino acids, such as lysine or cysteine. In one example, the branched poly(ethylcnc glycol) can be represented in general form as R(-PEG-OH)m in which R represents the core moiety, such as glycerol or pentaerythritol, and m represents the number of arms. Multi-armed PEG molecules, such as those described in U.S. Patent No. 5,932,462, which is incorporated by reference herein in its entirety, can also be used as the polymer backbone.

[0030] Figure 8 shows a representative branched PEG polymer of use in embodiments of the invention, referred to herein as “SA-glycerol-PEG.” Figure 8A shows an exemplary SA-glycerol-PEG component of CMP-SA-glyccrol-PEG or of a SA-glycerol-PEG linked to a glycan or an amino acid of a polypeptide. Figure 8B shows the SA-glycerol-PEG moiety linked to a glycan or polypeptide through a Gal residue. Figure 8C shows the SA-glycerol-PEG moiety linked to a glycan or polypeptide through a Gal-GalNAc residue. Figure 8D shows the SA-glycerol-PEG moiety linked to an amino acid of a polypeptide through a Gal-GalNAc moiety. In various embodiments, AA is threonine or serine. In an exemplary embodiment, AA is converted to an O-linked glycosylation site by deletion of the B-domain of the F VIII polypeptide. The discussion regarding the molecular weight of the polymer in paragraph [0032] hereinbelow is generally applicable to the branched PEG shown in Figure 8. In Figure 8, the index “n” represents any integer providing a linear (and thus a branched) m-PEG of the desired molecular weight as discussed in paragraph [0032]. In various embodiments, “n” is selected such that the linear m-PEG moiety is about 20 KDa to about 40 KDa, for example, about 20 KDa, about 30 KDa or about 40 KDa. Integers corresponding to these m-PEG molecular weights correspond to about 400 (e.g. about 455) to about 900 (e.g. about 910). Accordingly, “n” is selected to provide a branched PEG that is about 40 KDa to about 80 KDa, e.g., about 40 KDa, about 50 KDa, about 60 KDa, about 70 KDa, or about 80 KDa.

[0031] Many other polymers arc also suitable for the invention. Polymer backbones that arc non-peptidic and water-soluble, are particularly useful in the invention. Examples of suitable polymers 8 WO 2009/108806 PCT/US2009/035339 include, but are not limited to, other poly (alkylene glycols), such as poly (propylene glycol) ("PPG"), copolymers of ethylene glycol and propylene glycol and the like, poly(oxyethylatcd polyol), poly(olefmic alcohol), polyvinylpyrrolidone), poly(hydroxypropylmcthacrylamide), poly([alpha] -hydroxy acid), poly( vinyl alcohol), polyphosphazene, polyoxazoline, po!y(N-acryloylmorpholine), such as described in U.S. Patent No. 5,629,384, which is incorporated by reference herein in its entirety, as well as copolymers, terpolymers, and mixtures thereof. (0032] Although the molecular weight of each chain of the polymer backbone can vary, it is typically in the range of from about 100 Da to about 160,000 Da, such as e.g., from about 5,000 Da to about 100,000 Da. More specifically, the size of each conjugated hydrophilic polymer according to the present invention may vary from about 500 Da to about 80,000 Da, such as e.g. about 1000 Da to about 80,000 Da; about 2000 Da to about 70,000 Da; about 5000 to about 70,000 Da; about 5000 to about 60,000 Da; about 10,000 to about 70,000 Da; about 20,000 to about 60,000 Da; about 30,000 to about 60,000 Da; about 30,000 to about 50,000 Da; or about 30,000 to about 40,000 Da. It should be understood that these sizes represent estimates rather than exact measures. According to a preferred embodiment, the molecules according to the invention are conjugated with a heterogeneous population of hydrophilic polymers, such as e.g. PEG of a size of e.g. 10,000, 40,000, or 80,000 Da +/- about 5000, about 4000, about 3000, about 2000, or about 1000 Da.

[0033] O-linked oligosaccharide: Both N-glycans and O-glycans arc attached to proteins by the cells producing the protein. The cellular N-glycosylation machinery recognizes and glycosylates N-glycosylation signals (N-X-S/T motifs) in the amino acid chain, as the nascent protein is translocated from the ribosome to the endoplasmic reticulum (Kiely et al. 1976; Glabe et al. 1980). 10034] Likewise, O-glycans are attached to specific O-glycosylation sites in the amino acid chain, but the motifs triggering O-glycosylation are much more heterogeneous than the N-glycosylation signals, and our ability to predict O-glycosylation sites in amino acid sequences is still inadequate (Julenius ct al. 2004). The construction of artificial O-glycosylation sites it is thus associated with some uncertainty. The general assumption is that the native FVII] molecule does not contain any O-glycosylation sites, and the skilled man would therefore expect that at least one artificial O-glycosylation site would have to be constructed and inserted into the B domain in connection with practicing the present invention. |0035] The O-linked oligosaccharide in a truncated Factor VIII B domain may thus be covalently linked to a naturally occurring O-linked glycosylation sequence or an O-linked glycosylation sequence which has been artificially constructed by recombinant techniques. 9 WO 2009/108806 PCT/US2009/035339 [0036] According to a preferred embodiment of the present invention, the O-linked oligosaccharide is linked to a naturally occurring O-linked glycosylation sequence which is not exposed to glyeosylation in the wild type Factor VIII molecule but is becoming accessible to O-glycosylation as a consequence of truncation of the B domain. An example thereof is shown in the examples and in SEQ ID NO 2 (the truncated B-domain corresponds to amino acids 742-763). It is plausible that the “hidden” O-glycosylation site in SEQ ID NO 2 will also become glycosylated even if the B-domain is truncated at a somewhat different place, i.e. if the truncated B domain is somewhat shorter (c.g. 1, 2, 3, 4, or 5 amino acids shorter than SEQ ID NO 2) or longer (such as e.g. 1,2, 3, 4, 5, 6, 7, 8, 9, 10, 15, 20, 25, 30, 35, 40, 45, or 50 amino acids) compared to SEQ ID NO 2. This approach by activating a “hidden” O-glycosylation site by truncation of a B-domain rather than creation of an artificial O-glycosylation site has the advantage of creating a molecule with an advantageous safety profile (i.e. reduced allergenicity, etc.). Other O-glycosylation sites in the Factor VIII B-domain may likewise become activated by truncating the molecules in different ways. (0037] Glvco-PEGvIation of O-linked oligosaccharide: The biosynthesis of O-glycans can be modified and terminated with the addition of sialic acid residues relatively early in biosynthesis. Certain sialyltransferase enzymes are capable of acting on GalNAca-Ser/Thr, or early O-glycan core subtypes after Core 1 GalT action. The term T antigenis associated with the presence of the Galpl-3GalNAca-Ser/Thr disaccharide. Production of these structures involves a competition among glycosyltransferascs for the same substrate and thus thuc expression levels and subcellular distributions of glycosyltransferases within the Golgi apparatus determines the structural outcome in O-glycan biosynthesis and diversification. As illustatrated in figure 1, only the Gaipi-3GalNAca-Ser/Thr disaccharide is amenable for glycoPEGylation.

[0038| However, the available amount of this structure may be greatly enhanced through treatment of the protein with sialidase or Corel GalT or a combination thereof. As a result of the glycoPEGylation process the Sialic acid PEG is added to the native structure through an a3 bond to the Gaipi-3GalNAca-Scr/Thr disaccharidc of the target protein (Fig. 1).

[0039] Other hydrophilic polymers can also be attached to O-linked oligosaccharides. The basic requirement for enzymatically conjugating other hydrophilic polymers to FVIII via the O-glycan is the ability to couple them to the glycyl-Sialic acid derivative via the free amino group as disclosed in W003031464. This may be achieved through a large variety of coupling chemistries known to those skilled in the art. Examples of activated biocompatible polymer includes polyalkylene oxides such as without limitation polyethylene glycol (PEG), 2-(methacryloyloxy)ethyl phosphorylcholine (mPC) polymers (as described in W003062290), dextrans, colominic acids or other carbohydrate based polymers, polymers of amino acids or of specific peptides sequences, biotin derivatives, polyvinyl 10 WO 2009/108806 PCT/US2009/035339 alcohol (PVA), polycarboxylates, polyvinylpyrrolidone, polyethylcne-co-maleic acid anhydride, polystyrene-co-malic acid anhydride, poly ox azoline, poly- aery loylmorpho line, heparin, albumin, celluloses, hydrolysates of chitosan, starches such as hydroxyethyl-starches and hydroxy propyl-starches, glycogen, agaroses and derivatives thereof, guar gum, pullulan, inulin, xanthan gum, carrageenan, pectin, alginic acid hydrolysates, other bio-polymers and any equivalents thereof. |0040] Pharmaceutical composition: A pharmaceutical composition is herein preferably meant to encompass compositions comprising Factor VIIJI molecules according to the present invention suitable for parenteral administration, such as e.g. ready-to-use sterile aqueous compositions or dry sterile compositions that can be reconstituted in e.g. water or an aqueous buffer. The compositions according to the invention may comprise various pharmaceutically acceptable excipients, stabilizers, etc.

[0041] Additional ingredients in such compositions may include wetting agents, emulsifiers, antioxidants, bulking agents, tonicity modifiers, chelating agents, metal ions, oleaginous vehicles, proteins (e.g., human serum albumin, gelatine or proteins) and a zwitterion (e.g., an amino acid such as betaine, taurine, arginine, glycine, lysine and histidine). Such additional ingredients, of course, should not adversely affect the overall stability of the pharmaceutical formulation of the present invention. Parenteral administration may be performed by subcutaneous, intramuscular, intrapcritoncal or intravenous injection by means of a syringe, optionally a pcn-likc syringe. Alternatively, parenteral administration can be performed by means of an infusion pump. A further option is a composition which may be a solution or suspension for the administration of the FVIII compound in the form of a nasal or pulmonal spray. As a still further option, the pharmaceutical compositions containing the FVIII compound of the invention may also be adapted to transdcrmal administration, e.g. by needle-free injection or from a patch, optionally an iontophoretic patch, or transmucosal, e.g. buccal, administration. (00421 In a first aspect the present invention thus relates to a B-domain truncated Factor VIII molecule with a modified circulatory half life, said molecule being covalently conjugated with a hydrophilic polymer via an O-linked oligosaccharide in the truncated B domain, wherein Factor VIII activation (activation of the molecule) results in removal of the covalently conjugated hydrophilic polymer. (0043) According to one embodiment, the hydrophilic polymer is PEG. The size of the PEG polymer may vary from from about 10,000 to about 160,000 Da; such as 10,000 to 80,000 Da, such as e.g. about 10,000; 15,000, 20,000; 25,000; 30,000; 35,000; 40,000; 45,000; 50,000; 55,000; 60,000; 65,000, 70,000; 75,000; or 80,000 Da. Preferably, the O-linked oligosaccharide is attached to an O- 11

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WO 2009/108806 PCT/US2009/035339 glycosylation site that is made by truncation of the B-domain and not by inserting an artificial 0-glycosylation site that is not found in the wt FVIIl molecule.

[0044] According to a particularly preferred embodiment, the molecule according to the present invention comprises the amino acid sequence as set forth in SEQ ID NO 2. Such molecules have a unique feature in that the activated FVIIl molecule is identical to the native active FVIIl molecule. This feature appears to have advantageous properties in safety assessments.

[00451 The present invention also relates to pharmaceutical compositions comprising molecules according to the present invention.

[0046] The present invention furthermore relates to a method of obtaining a molecule according to the present invention, wherein said method comprises conjugating a B-domain truncated Factor VIII molecule with a hydrophilic polymer, such as e.g. a PEG group, via an O-linked oligosaccharide in the truncated B domain. It follows that the present invention also relates to molecules obtained by or obtainable by such methods. 10047] In another aspect, the present invention relates to a method of treatment of a haemophilic disease comprising administering to a patient in need thereof a therapeutically effective amount of a molecule according to the invention.

[0048] The term “treatment”, as used herein, refers to the medical therapy of any human or other animal subject in need thereof. Said subject is expected to have undergone physical examination by a medical practitioner, who has given a tentative or definitive diagnosis which would indicate that the use of said specific treatment is beneficial to the health of said human or other animal subject. The timing and purpose of said treatment may vary from one individual to another, according to the status quo of the subject’s health. Thus, said treatment may be prophylactic, palliative, symptomatic and/or curative.

[0049] In yet another aspect, the present invention relates to use of a molecule according to the invention as a medicament as well as use of a molecule according to the invention for manufacture of a medicament for treatment of haemophilia.

[0050] In a final aspect, the present invention relates to a method of engineering a B-domain truncated Factor VIII molecule according to the present invention, said method comprising (i) truncating the B-domain and optionally subjecting the amino acid sequence of this truncated Factor VIIJ molecule to an analysis identifying potential O-linked glycosylation sites, (ii) producing the 12 WO 2009/108806 PCT/US2009/035339 molecule in a suitable host cell and (iii) selecting molecules having O-linked glycans in the truncated B-domain.

Brief description of the drawings [0051] In the figures, the size of the conjugated groups is sometimes referred to as “K”, which is herein meant to be equivalent to KDa (kilo Dalton). (0052] Figure 1: Schematic drawing of glycol PEGylation process of O-linked oligosaccharides. The figure does not represent an exhaustive list of possible ways to arrive at the products obtained in the examples. (0053] Figure 2: Ion-exchange chromatography of the reaction mixture on Source 15Q (A). SDS-PAGE with molecular markers (left) of collected fraction (B).

[0054] Figure 3: Purification of the capped product on superdex 200 size-exclusion chromatography. (0055] Figure 4: Clotting activity ofO-glycoPEGylated rFVIll using various aPTT reagents. (A) shos the ration between the clotting activity and the chromogenie activity. (B) shows the specific clotting activity.

[0056] Figure 5: In vivo effects (time to occlusion) in FVIII KO mice of 40K-PEG-[O]-N8 [0057] Figure 6: Flow diagram showing the process steps involved in production of glycoPEGylated Factor FV111 according to the invention.

[00581 Figure 7: Schematic representation of a Factor VIII molecule according to the present invention produced in the Examples.

EXAMPLES

Example 1

Production of recombinant B domain truncated O-glycosylaled Factor Fill (0059] An example of the amino acid sequence of a B-domain deleted Factor VIII molecule is given in SEQ ID NO 2. This polypeptide may also be referred to as “N8”. This molecule comprises a 21 amino acid residue linker sequence (SFSQNSRHPSQNPPVLKRHQR - the underlined S is the Serine residue with the O-glygan that is pegylated in Example 2). 13 WO 2009/108806 PCT/US2009/035339 [0060J Factor VIII molecules according to the present invention may in the Examples be referred to in various ways - but all references to Factor VUI molecules refer to Factor VIII molecules according to the invention, or alternatively Factor Vlll molecules in the process of being converted to Factor VIII molecules according to the invention.

[0061] SEQ ID NO 2:

ATRRYYLGAVELSWDYMQSDLGELPVDARFPPRVPKSFPFNTSWYKKTLFVEFTDHLFNIA

RPRPPWMGLLGPT1QAEVYDTWITLKNMASHPVSLHAVGVSYWKASEGAEYDDQTSQREK

EDDKVFPGGSHTYVWQVLKENGPMASDPLCLTYSYLSHVDLVKDLNSGLIGALLVCREGSL

AREKTQTLHKFILLFAVFDEGKSWHSETKNSLMQDRDAASARAWPKMHTVNGYVNRSLPG

L1GCHRKSVYWHV1GMGTTPEVHSIFLEGHTFLVRNHRQASLE1SP1TFLTAQTLLMDLGQFLL

FCHISSHQHDGMEAYVKVDSCPEEPQLRMKNNEEAEDYDDDLTDSEMDWRFDDDNSPSFI

QIRSVAKKHPKTWVHY1AAEEEDWDYAPLVLAPDDRSYKSQYLNNGPQR1GRKYKKVRFM

AYTDETFKTREAJQHESGILGPLLYGEVGDTLLJIFKNQASRPYNIYPHGITDVRPLYSRRLPKG

VKHLKDFPILPGEIFKYKWTVTVEDGPTKSDPRCLTRYYSSFVNMERDLASGLIGPLL1CYKES

VDQRGNQ1MSDKRNVILFSVFDENRSWYLTENIQRFLPNPAGVQLEDPEFQASNIMHSINGYV

FDSLQLSVCLHEVAYWYILS1GAQTDFLSVFFSGYTFKHKMVYEDTLTLFPFSGETVFMSMEN

PGLWILGCHNSDFRNRGMTALLKVSSCDKNTGDYYEDSYEDISAYLLSKNNAJEPRSFSQNSR

HPSQNPPVLKRHQREITRTTLQSDQEEIDYDDT1SVEMKKEDFDIYDEDENQSPRSFQKKTRH

YFIAAVERLWDYGMSSSPHVLRNRAQSGSVPQFKKWFQEFTDGSFTQPLYRGELNEHLGLL

GPYIRAEVEDNIMVTFRNQASRPYSFYSSL1SYEEDQRQGAEPRKNFVKPNETKTYFWKVQH

HMAPTKDEFDCKAWAYFSDVDLEKDVHSGLIGPLLVCHTNTLNPAHGRQVTVQEFALFFTIF

DETKSWYFTENMERNCRAPCNIQMEDPTFKENYRFHA1NGYIMDTLPGLVMAQDQRIRWYL

LSMGSNENIHS1HFSGHVFTVRKKEEYKMALYNLYPGVFETVEMLPSKAG1WRVECLJGEHL

HAGMSTLFLVYSNKCQTPLGMASGHIRDFQ1TASGQYGQWAPRLARLHYSGSINAWSTREPF

SWIKVDLLAPMIIHGIKTQGARQKFSSLYISQF1IMYSLDGKKWQTYRGNSTGTLMVFFGNVD

SSGDCHNIFNPPIIARYIRLHPTHYSIRSTLRMELMGCDLNSCSMPLGMESKAISDAQITASSYFT

NMFATWSPSKARLHLQGRSNAWRPQVNNPKEWLQVDFQRTMKVTGVTTQGVKSLLTSMY

VKEFL1SSSQDGHQWTLFFQNGKVKVFQGNQDSFTPWNSLDPPLLTRYLRIHPQSWVHQIAL

RMEVLGCEAQDLY

Cell line and culture process: 10062] Using Factor VIII cDNA a mammalian expression plasmid encoding B-domain deleted Factor VIII having an amino acid sequence as set forth in SEQ ID NO 2 was constructed. The plasmid is encoding Factor VIII heavy chain comprising amino acid 1-740 of full length human Factor VIII and Factor VIII light chain comprising amino acid 1649-2332 of full length human Factor VIII. The heavy and light chain sequences are connected by a 21 amino acid linker with the sequence of amino acid 741-750 and 1638-1648 of full length human Factor VIII. Chinese hamster ovary (CHO) cells were transfected with the BDD Factor VIII coding plasmid and selected with the dihydrofolate reductase system eventually leading to a clonal suspension producer cell cultivated in animal component-free medium. 14 WO 2009/108806 PCT/US2009/035339 (0063] The first step in the process is the inoculation of a cell vial, from a working cell bank vial, into a chemically defined and animal component free growth medium. Initially after thawing, the cells are incubated in a T-flask. One or two days after thawing, the cells are transferred to a shaker flask, and the culture volume is expanded by successive dilutions in order to keep the cell density between 0.2 - 3,0 x 106 cells/ml. The next step is the transfer of the shaker flask culture into seed biorcactors. The culture volume is here further expanded before the final transfer to the production bioreactor. The same chemically defined and animal component free medium is used for alt the inoculum expansion steps. After transfer to the production bioreactor, the medium is supplemented with components that increase the product concentration. In the production bioreactor the cells are cultured in a repeated batch process with a cycle time of three days. At harvest, 80 - 90 % of the culture volume is transferred to a harvest tank. The remaining culture fluid is then diluted with fresh medium, in order to obtain the initial cell density, and then a new growth period is initiated.

[0064] The harvest batch is clarified by centrifugation and filtration and transferred to a holding tank before initiation of the purification process. A buffer is added to the cell free harvest in the holding tank to stabilise pH. 100651 By the end of the production run, cells are collected and frozen down, in order to make an end of production cell bank. This cell bank is tested for mycoplasma, sterility and viral contamination.

Purification: [0066] For the isolation of B-domain-deleted Factor VIII from cell culture media, a four step purification procedure was used including a concentration step on a Capto MMC column, an immunoabsorbent chromatography step, an anionic exchange chromatography and finally a gel filtration step. Typically the following procedure was used: 11 litre of sterile filtered medium was pumped onto at column (1.6 x 12 cm) of Capto MMC (GE Healthcare, Sweden) equilibrated in buffer A: 20 mM imidazole, 10 mM CaCh, 50 mM NaCl, 0.02 % Tween 80, pH = 7.5 at a flow of 15 ml/min. The column was washed with 75 ml of buffer A followed by wash with 75 ml of buffer A containing 1.5 M NaCl. The protein was eluted with 20 mM imidazole, 10 mM CaCb, 0.02 % Tween 80, 2.5 M NaCl, 8 M ethyleneglycol, pH - 7.5 at a flow of 1 ml/min. Fractions of 8 ml were collected and assayed for Factor VIII activity (CoA-test). Factor VIII containing fractions were pooled and normally a pool volume of around 50 ml was obtained.

[0067] A monoclonal antibody against Factor VIII has been developed (Kjalke Eur J Biochem 234 773). By epitope mapping (results not shown) this antibody, F25, was found to recognise the far C-terminal sequence of the heavy chain from amino acid residue 725 to 740. The F25 antibody was 15

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WO 2009/108806 PCT/US2009/035339 coupled to NHS-activated Sepharose 4 FF (GE Healthcare, Bio-Sciences AB, Uppsala, Sweden) at a density of 2.4 mg per ml of gel essentially as described by the manufacturer. The pool from the previous step was diluted 10 times with 20 mM imidazole, 10 mM CaCb, 0.02 % Tween 80, pH = 7.3 and applied to the F25 Sepharose column (1.6 x 9.5 cm) equilibrated with 20 mM imidazole, 10 mM CaCl2, 150 mM NaCl, 0.02 % Tween 80, 1 M glycerol pH = 7.3 at a flow of 0.5 ml/min. The column was washed with equilibration buffer until the UV signal was constant and then with 20 mM imidazole, 10 mM CaCl2, 0.65 M NaCl, pH = 7.3 until the UV signal was constant again. Factor VI11 was eluted with 20 mM imidazole, 10 mM CaCl2, 0.02 % Tween 80, 2.5 MNaCl, 50% ethyleneglycol, pH = 7.3 at a flow of 1 ml/min. Fractions of 1 ml were collected and assayed for Factor VIII activity (CoA-test). Factor VIII containing fractions were pooled and normally a pool volume of around 25 ml was obtained.

[00681 A buffer A: 20 mM imidazole, 10 mM CaCl2, 0.02 % Tween 80, 1 M glycerol, pH = 7.3 and a buffer B: 20 mM imidazole, 10 mM CaCl2, 0.02 % Tween 80, 1 M glycerol, 1 M NaCl, pH = 7.3 was prepared for the ion-exchange step. A column (1x10 cm) of Macro-Prep 25Q Support (Bio-Rad Laboratories, Hercules, CA, USA) was equilibrated with 85% buffer A/l 5% Buffer B at a flow of 2 ml/min. The pool from the previous step was diluted 10 times with buffer A and pumped onto the column with a flow of 2 ml/min. The column was washed with 85% buffer A/l 5% buffer B at a flow of 2 ml/min and Factor VIII was eluted with a linear gradient from 15 % buffer B to 70 % buffer B over 120 ml at a flow of 2 ml/min. Fractions of 2 ml were collected and assayed for Factor Vlll activity (CoA-test). Factor VIII containing fractions were pooled and normally a pool volume of around 36 ml was obtained.

[0069] The pool from the previous step was applied to a Superdex 200, prep grade (GE Healthcare, Bio-Sciences AB, Uppsala, Sweden) column (2.6 x 60 cm) equilibrated and eluted at 1 ml/min with 20 mM imidazole, 10 mM CaCl2, 0.02 % Tween 80, 1 M glycerol, 150 mM NaCl, pH = 7.3. Fractions of 3 ml were collected and assayed for Factor VIII activity (CoA-test). Factor VIII containing fractions were pooled and normally a pool volume of around 57 ml was obtained. The pool containing Factor Vlll was store at - 80°C.

[0070] With the use of the above four-step purification procedure an overall yield of approximately 15 % was obtained as judged by CoA activity and ELISA measurements.

[0071] The cell line used for manufacture of N8 is a recombinant Chinese hamster ovary (CHO) cell line stably transfected with expression plasmid #814 F8-500 in pTSV7 consisting of the pTSV7 expression vector with an insert containing cDNA encoding the F8-500 protein. “N8” is herein meant to correspond to a protein having an amino acid sequence as listed in SEQ ID NO 2. Starting at the 16 WO 2009/108806 PCT/US2009/035339 N-terminus, the F8-500 protein (N8) consists of the FVIII signal peptide (amino acids -19 to -1) followed by the FVII1 heavy chain without the B domain (amino acids 1-740), a 21 amino acid linker (SFSQNSRHPSQNPPVLKRHQR), and the FVII1 light chain (amino acids 1649-2332 of wild-type human FVIll). The sequence of the 21 amino acid linker is derived from the FVIII B domain and consists of amino acids 741-750 and 1638-1648 of full length FVIII.

[0072] CHO cells were transfected with 814 F8-500 in pTSV7 and selected with the dihydrofolate reductase system eventually leading to a clonal suspension producer cell cultivated in animal component-free medium. A production run is initiated by thawing a working cell bank vial and expanding the cells until transfer to a production bioreactor. The same chemically defined and animal component free medium is used for all the inoculum expansion steps. After transfer to the production biorcactor, the medium is supplemented with components that increase the product concentration. In the production bioreactor the cells are cultured in a repeated batch process with a cycle time of three days. At harvest, 80 - 90 % of the culture volume is transferred to a harvest tank. The remaining culture fluid is then diluted with fresh medium, in order to obtain the initial cell density, and then a new growth period is initiated. The harvest batch is clarified by centrifugation and filtration and transferred to a holding tank before initiation of the purification process. A buffer is added to the cell free harvest in the holding tank to stabilize pH.

Example 2 PEGylation of recombinant B domain truncated and O-glycosylated Factor V1H: 10073] The recombinant Factor VIII molecules obtained in Example 1 are conjugated with polycthylenglycol (PEG) using the following procedure: [0074] For the glycoPEGylation of the recombinant Factor VIII molecules obtained in Example 1 to be efficient a FVIII concentration &gt; 5mg/ml is preferred. Since FVIII is not normally soluble at the concentration a screening of selected buffer compositions was conducted (see some of these results in table I).

[0075] Based on these considerations, a buffer containing 50 mM MES, 50 mM CaC12, 150 mM NaCl, 20% glycerol, pH 6.0 was found to be a suitable reaction buffer. 17 WO 2009/108806 PCT/US2009/035339 (0076] Table 1 Evaluation of impact of reaction conditions on FVIII solubility and aggregation.

Reaction buffer composition Precipitate % Aggregate 10 mM Histidine, 260 mM Glycine, 1 % Sucrose, 10 mM CaC12 YES n.d. 50 mM HEPES, 10 mM CaC12, 150 mM NaCl, pH 7; YES n.d. 50 mM MES, 10 mM CaC12, 150 mM NaCl, pH 6.0 YES n.d. 50 mM MES, 50 mM CaC12, 150 mM NaCl, pH 6.0 NO 8 50 mM MES, 50 mM CaC12, 150 mMNaCl, 10% glycerol, pH 6.0 NO 5 50 mM MES, 50 mM CaC12, 150 mM NaCl, 20% glycerol, pH 6.0 NO 1.0-1.7 [0077] Recombinant FVIH which had been purified as described above was concentrated in reaction buffer either by ion exchange on a Poros 50 HQ column using step elution, on a Sartorius Vivaspin (PES) filter, 10 kDa cut-off or on an Amicon 10 kDa MWCO PES filter to a concentration of 6-10 mg/mL. The glycoPEGylation of FV1II was initiated by mixing Factor Vlll (BDD) (—4.7 mg/mL final) with Sialidase (A. urifaciens) (159 mU/mL), CMP-SA-glycerol-PEG-40 kDa (5 mol.cq.) and MBP-ST3Gatl (540 mU) in reaction buffer (50 mM MES, 50 mM CaC12, 150 mM NaCl, 20% glycerol, 0.5 mM antipain, pH 6.0). The reaction mixture was incubated at 32°C until a conversion yield of -20-30% of total.

[0078] Following the incubation the sample was diluted with Buffer A (25 mM Tris, 5 mM CaCb, 20 mM NaCl, 20% glycerol, pH 7.5) and applied onto a Source 15Q column (1 cm id x 6 cm, 4.7 mL, 1 mL/min, 280 nm). The bound material was washed with Buffer A and eluted using a step gradient with Buffer B (25 mM Tris, 5 mM CaCh, 1 M NaCl, 20% glycerol, pH 7.5).

GlycoPEGylated Factor VIH-(O)-SA-glycerol-PEG-40 kDa was eluted from the column at -25% Buffer B. Figure 2 shows ion-exchange chromatography of the reaction mixture on Source 15Q.

[0079] In order to block free galactose moieties which had been exposed on the N-glycans during the sialidase treatment the pooled fraction of Factor VIlI-SA-glycerol-PEG-40 kDa (1.0 mg/mL final) was mixed with CMP-SA (2,000 mol eq) and MBP-SBD-ST3Gal3 (400 mU/mL) in reaction buffer 50 18 WO 2009/108806 PCT/US2009/035339 mM MES, 20 mM CaCt2, 150 mM NaCl, 10 mM MnC12, 20% glycerol, pH 6.0 and incubated at 32°C for 11 hours. (0080] The resulting capped, glycoPEGylated Factor VlIl-SA-glycerol-PEG-40 kDa was seperated from CMP-SA and ST3GalIII by gel-filtration on a Supcrdcx 200 column (10 cm id x 300 mm; 280 nm) equilibrated with 50 mM MES, 50mM CaC12, 150 mM NaCl, 10 % glycerol, pH 6.0; flow rate of 0.25 mL/min. The product Factor VIII-SA-glycerol-PEG-40 kDa elutes at 38 min. Figure 3 shows purification of the capped product using Supcrdcx 200 size-exclusion chromatography. The peak fraction was collected, aliquoted and subjected to subsequent analysis.

[0081] The purpose of the capping procedure is to reduce in vivo clearance of the conjugated Factor VIII molecule.

Example 3

Activity of O-glycan PEGylated rFVIII in chromogenic FVIH activity assay: [0082] The activity of the Ο-glycoPEGylated rFVIII obtained in Example 2 was evaluated in a chromogenic FV111 assay using Contest SP reagents (Chromogenix) as follows: rFVJll samples and calibrator (the 7th international FV1II standard from N1BSC) were diluted in Coatcst assay buffer (50 mM Tris, 150 mM NaCl, 1 % BSA, pH 7.3, with preservative). Fifty μΐ of samples, standards, and buffer negative control were added to 96-weil microtiter plates (Nunc) in duplicates. The Factor IXa/F actor X reagent, the phospholipid reagent and CaCh from the Coatest SP kit were mixed 5:1:3 (vokvohvol) and 75 μΐ of this added to the wells. After 15 min incubation at room temperature 50 μΐ of the Factor Xa substrate S-2765/thrombin inhibitor 1-2581 mix was added and the reactions incubated 10 min at room temperature before 25 μΐ 1 M citric acid, pH 3, was added. The absorbance at 415 nm was measured on a Spectramax microtiter plate reader (Molecular Devices) with absorbance at 620 nm used as reference wavelength. The value for the negative control was subtracted from all samples and a calibration curve prepared by linear regression of the absorbance values plotted vs. FV1II concentration. The specific activity was calculated by dividing the activity of the samples with the protein concentration determined by size exclusion HPLC by integrating the light chain peak in the HPLC chromatogram, i.e. the PEG-moiety was not included. The data in table 2 demonstrate that the specific chromogenic activity was maintained for the Ο-glycoPEGylated rFVIII compounds, meaning that Factor VIII activity appear to be retained in the PEGylated variants. 19 WO 2009/108806 PCT/US2009/035339

(0083] Tabic 2. Specific chromogenic activity of O-glycoPEGylated rFVIII with different PEG group sizes. rFVIII compound Specific chromogenic activity (lU/mg) rFVIII 11819±727 (5) 10KDa-PEG-[O]-rFVIll Approx 8331 (1) 40KDa-PEG-[O]-rFVlll 9760 ±886 (8) 80KDa-PEG-[O]-rFVIII 12129 ±2643 (3)

Data are mean and standard deviations of the numbers of independent determinations noted in parentheses

Example 4

Activity of O-glycan PEGylated rFVlfl in FVIII clotting activity assay (0084J The activity of the O-glyco PEGylated rFVIII was further evaluated in FVIII clotting assay. rFVIII samples were diluted in HBS/BSA (20 mM hepes, 150 mM NaCl, pH 7.4 with 1 % BSA) to approximately 10 U/ml followed by 10-fold dilution in FVIII-deficient plasma containing VWF (Dade Behring). The samples and a calibrated plasma standard (HemosIL Calibration Plasma from Instrumentation Laboratory) were subsequently diluted in HBS/BSA to four (samples) or six (calibrator) different concentrations. The clotting time was measured on an ACL9000 instrument (Instrumentation laboratory) using the single factor program, where samples/standards were mixed with equal volumes of FVIIl-deficient plasma with VWF (Dade Behring), calcium and aPTT reagents, and the clotting time measured. As reagents the following were used: Synthasil (HemosIL, Instrumentation Laboratory), Actin FS (Activated PTT Reagent, Dade Behring) Stago (STA® PTT-A, Stago), and dAPPTin (DAPPTIN®TC, Tcchnoclone). The activities of the samples were calculated based on a semi-log plot of clotting time versus concentration of the calibrator.

[0085] The clotting activity (fig 4) of the O-glycoPEGyated rFVIII compounds (control, 10, 40, and 80 kDA PEG, respectively) was decreased to various extend depending on the PEG size and the aPTT reagents used. Using Synthasil or dAPPTin as aPTT reagents resulted in a gradual decrease in clotting activity with PEG-size. With Stago’s aPTT reagent, a 50% lower specific clotting activity was observed for all three O-glycoPEGylated N8 compounds evaluated. When Actin FS was used as aPTT reagent a specific clotting activity around 10,000 lU/mg was maintained. The data indicates that the aPTT assay is influenced by the presence of a PEG moiety, however, using a selected aPTT reagents e.g. Actin FS the specific clotting activity of rFVIII is not impaired upon O-glycoPEGylation. 20 WO 2009/108806 PCT/US2009/035339

Example 5:

Effect of O-linked PEGylation of rFVfflon co-factor activity and rate of FVffl activation [0086) Incorporation of activated FVIII into the FlXa-FVIIIa complex enhances the catalytic efficiency of FIXa-catalyzed FX activation five orders of magnitude (van Dieijen et al. (1981) J Biol Chem 256:3433) and characterization of FIXa-FVIHa complex assembly and FX activation kinetics is a sensitive measure of the functional integrity of FVIlla molecules. The co-factor activity of thrombin-activated rFVHI or PEG-rFVIII was characterized by determining the kinetic parameters of FIXa-catalyzed FX activation in the presence of phospholipids and thrombin-activated rFVIlI or PEG-rFVIII. Using the FVIlla activity assay (FLXa-cofactor activity assay), reciprocal titrations of FIXa and FVIlla against a fixed concentration (0.1 nM) of rFVilla or FIXa, respectively, were performed to obtain apparent affinity of FIXa for rFVHIa (Kyjixa) and functional FVIlla concentration. The Michaelis constant (km) and turn-over number (kcat) of FX activation were obtained from titrations ofFX against a fixed concentration of FIXa-FVITIa complex.

[0087] The FIXa-cofactor activity assays was carried out as follows: Thrombin-activated rFVlIJ and PEG-rFVIII variants were prepared freshly for each test by incubating rFVIlI (usually 0.7 nM, 1 U/mL) with 5 nM human α-thrombin for exactly 30 seconds at 37°C. Subsequently, the rate of FX activation was quantified by subsampling the activation reaction above into a prepared mixture of FIXa, phospholipid vesicles (Phospholipid TGT from Rossix [Molndal, Sweden]), hirudin, Pefabloc Xa and CaCb; FX activation was initiated by addition of FX and allowed to proceed for either 30 seconds or 60 seconds at 37°C. Activation was stopped by dilution of the FX activation reaction into ice cold buffer containing EDTA. Using a FXa specific chromogenic substrate, the concentration of FXa was quantified by reading absorbance at 405 nM in an ELISA reader. A reference curve prepared using purified FXa was used to convert absorbance to FXa concentration. The turn-over number of FIXa-rFVIIIa complexes assembled from activated rFVIIl or PEG-rFVIII variants was used to convert the rate of FX activation to rFVHIa concentration.

[0088] The rate of thrombin-catalyzed rFVIlI activation was measured by quantifying the initial (0 to 3 min) formation of rFVHIa in a mixture containing 0.7 nM rFVIIl or PEG-rFVIII and 0.13 nM human α-thrombin. Formation of FVIlla was linear in time. The rate of FVIlla activation was expressed as moles rF VII la formed per minute per mole of rFVIIl initially present (v/[rFVIll]o).

[0089] O -linked glycoPEGylation of rFVIIl did not affect the rate of thrombin-catalyzed rFVIIl activation or the km or kca, of FIXa-catalyzed activation of FX in the presence of activated rFVIIl (see 21 WO 2009/108806 PCT/US2009/035339

Table 3). Furthermore, O-linked glycoPEGylation did not affect the apparent Kd of rFVIIla-FlXa interaction (KyjiXa). 10090] Figure 4 shows clotting activity of Ο-glycoPEGylated rFVIll using various aPTT reagents. Data are shown as the ratio between the clotting activity and the chromogcnic activity (A) or as the specific clotting activity (B). Mean and standard deviations of values from three independent experiments are shown. (0091] Table 3: Rate of rFVIll activation and kinetic constants of FX act ivation by FIXa FVIII molecule Rate of FVIII activation Κ'άπχη FX Activation Km kcal loomin' nM nM s*1 rFVIll 10.4±1.9 0.88±0.46 7.94=1.7 4.5±1.9 40K-PEG-[Oj-rFVIII 9.94:3.8 0.42±0.02 6.4±0.8 4.7±0.2 80K-PEG-[O]-rFVlII 9.8±3.4 1.1l±0.12 8.2±0.6 3.7±0.4

Data are mean and standard deviations of 3-6 measurements.

Example 6

Pharmacokinetics of glycoPEGylated B-domain deleted (BDD)-FVIII in FW1I KO mice and vWF KO mice [0092] The pharmacokinetics of BDD-FVIII glycoPEGylated with various PEG sizes was studied following i.v. administration of 280 TU/kg to FVIII KO mice. (0093] The following compounds were studied: BDD-FVIII, BDD-FVIII-10K PEG (O-glycan, 0129-0000-1005), BDD-FV1II-40K PEG (O-glycan, 0129-0000-1003), BDD-FVIll-2x40K PEG (O and N-glycan 0129-0000-1008-1 A), BDD-FVIII-80K PEG (N-glycan, 0129-0000-1012, O-glycan 0129-0000-1009).

Design of animal studies: (0094] Factor VIII knock out (FVIII KO) mice were bred at Taconic M&amp;amp;B, based on exon 16 KO in C57B1/6 background. A mixture of male and female (app. 1:1) with an approximate weight of 25 g and age range of 19-26 weeks were employed. The mice were not fully back-crossed. No FVIII is detected in this mouse strain. 22

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WO 2009/108806 PCT/US2009/035339 [0095] The mice were given single i.v. injections of 280 lU/kg in the tail vein with the compounds listed above· If a mouse was dosed peri-veneously, the mouse was exchanged with another mouse. After dosing, orbital plexus blood samples were collected from pre-dose until 64 hours after dosing using non-coated capillary glass tubes. Three samples were taken from each mouse, and 2,3 or 4 samples were collected at each time point. Blood was stabilised in sodium citrate (9:1) and diluted in FVIII COA SP buffer (1:4) before centrifugation for 5 minutes at 4000g. Plasma obtained from diluted blood was frozen at dry ice at kept at -80°C before quantitative analysis by means of FV111 chromogenic activity and/or FVIII antigen analysis.

Quantitative plasma analysis: [0096] The FV111 chromogenic activity was determined by the use of reagents from the Coatest SP kit (Chromogcnix). Diluted plasma samples, calibrators (ILS calibration plasma) in Coatest SP-buffcr, and buffer negative control (50 μΐ) were added to 96-well microtiter plates (Nunc) in duplicates. The Factor IXa/Factor X reagent, the phospholipid reagent and CaC12 from the Coatest SP kit were mixed 5:1:3 (vol:vol:vol) and 75 μΐ of this added to the wells. After 15 min incubation at room temperature 50 μΐ of the Factor Xa substrate S-2765/thrombin inhibitor 1-2581 mix was added and the reactions incubated 10 min at room temperature before 25 μΐ 2% citric acid was added. The absorbance at 405 nm was measured on a Spectramax microtitcr plate reader (Molecular Devices). FVIII activity in the plasma samples was calculated from the calibration curve made by dilutions of the calibrated international plasma standard (ILS). (0097] The FVIII antigen assay was a commercial available ELISA kit from Diagnostica Stago (Asserachrom VIII :CAg) using two monoclonal antibodies directed against the light chain of human FVIII. Calibrators (dilutions of the compounds) or plasma samples were diluted at least 50-fold in coatest SP dilution buffer supplied by the kit were applied to the precoated wells and the ELISA performed according to the manufactures instructions. The values used for reporting the pharmacokinetic study are based on the standard curve made from the compounds themselves.

Pharmacokinetic parameters estimations: (0098( Pharmacokinetic analysis was carried out by non-compartmental methods (NCA) of data using ILS as calibrator (data based on chromogenic activity), using the compounds themselves as calibrator (data based on ELISA). From the data the following parameters were estimated: Cmax (maximum concentration, after i.v. administration this is at the first sampling time point), Tmax (time of maximum concentration, after i.v. administration this is the first time point), AUC0-°o (area under the curve from time 0 to infinity), Τ1Λ, (terminal half-live), CL (clearance) and Vss (volume of distribution at steady state). All calculations were performed using WinNonlin Pro version 4.1. 23

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WO 2009/108806 PCT/US2009/035339 E00991 After i.v. injection of 280 IU/Kg BDD-FVIII, BDD-FVIII-1 OKDa PEG, BDD-FVIII-40KDa PEG , BDD-FVIlI-2x40KDa PEG and BDD-FVIII-80KDa PEG to FV1II KO mice, the half-life increased along with increasing PEG size in the range of 7.8 h (BDD-FV11I) to 15-16 h (Table 4), which corresponds to a 2-fold increase. Similarly, the clearance was reduced and the MRT increased with increasing PEG sizes (Table 4).

[0100] Table 4: Pharmacokinetic parameters estimates of FVI11 glycoPEGylated with different sizes of PEG after i.v. administration to FVII1 KO mice based on chromogcnic activity (BDD: B-domain deleted).

Compound Dose (/U/kg) T'/l (h) CL (ml/h/kg) MRT (h) Prolongation (fold) BDD-FVI1I 280 6.7-9.3 8.1-10 9.9-11 1 BDD-FVIII lOKDa PEG (O-glycan) 280 10 8.5 16 1.3 BDD-FVIlI-2x40KDa PEG 280 13 5.8 19 1.9-2.1 BDD-FVIII 40KDa PEG (O-glycan) 280 15-16 3.6-3.8 20-22 1.7 BDD-FVIII 80KDa PEG (O-glycan) 280 15 6.4 21 1.9

Conclusion: [0101] GlycoPEGylation of BDD-FVIII increased the T'/2 1.3-2.1 fold as compared to BDD-FVIII after i.v. administration of 280 lU/kg to FV11I KO mice. An increasing T'/2 was observed as the size of the PEG group was increased in the range of lOKDa to 80KDa PEG.

Example 7 {0102] Prolonged haemostatic effect of 40K-PEG-[O]-N8 compared to Advate in a FeCl3 induced injury model in haemophilia A mice [01031 The duration of action of 40K-PEG-[O]-N8 vs. recombinant FVJ1I (Advate) was investigated in a FcC13 induced injury model in haemophilia A (F8-KO) mice.

[01041 Mice were anesthetized and placed on a heating pad (37°C) to maintain body temperature. The carotid artery was exposed and a flow-probe (0.5PSB Nanoprobe) that measures blood flow by 24

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WO 2009/108806 PCT/US2009/035339 ultrasound was placed around the artery. The injury (an iron-mediated chemical oxidation) was induced by applying a filter paper (2x5 mm) briefly soaked in a 10% FeC13 solution around the exposed carotid artery. The filter paper was removed after 3 min. The artery was then washed three times with 0.9% NaCl and finally Surgilube (an acoustic coupler) was applied in order to displace air in the flow-probe and secure an optimised measurement of the blood flow. Blood flow (ml/min) was recorded for 25 min after removing the FeC13 saturated filter paper and the time to occlusion was determined by measuring the time (in min) from removal of FcC13 saturated filter paper until the blood flow was 0 ml/min. If occlusion did not occur after 25 min the occlusion time was reported as 25 min even though no occlusion occurred during the observation period. F8-K.0 mice (n = 6-10) were treated with Advate (280 U/kg), 40K-PEG-[O]-N8 (280 U/kg), or vehicle. The FeC13 induced injury was made 5 min (acute effect) or 24,48, 60, and 72 hours after dosing. The blood flow (ml/min) was recorded for 25 min after removal of FcC13, and subsequently the time to occlusion was determined.

[0105J No occlusion occurred in vehicle treated F8-KO mice, whereas occlusion occurred in all mice treated with 40KDa-PEG-[O]-N8 and Advate 5 min after dosing (acute effect) with a mean occlusion time of 4.3±0.4 min and 5.2±0.7 min, respectively. In 40KDa-PEG-[O]-N8 treated F8-KO mice the average occlusion time increased to 13.8±3.4 min at 72 hours after dosing. In contrast the Advate treated F8-KO mice had an occlusion time of 13.0±3.4 min and 15.9±2.9 min after 24 and 48 hours, respectively. Importantly no occlusions were observed 60 and 72 hours after administration of Advate. In all mice treated with 40KDa-PEG-[O]-N8 occlusion was observed 24 hours after dosing whereas only 67% of the mice treated with Advate occluded. After 72 hours occlusion was still seen in 63% of the mice treated with 40KDa-PEG-[O]-N8, whereas no occlusion was observed 60 and 72 hours after administration of Advate.

Prolonged effect of 40KDa-PEG-[O]-N8 in F8-KO mice.

[0106] The FeC13 induced injury was made 5 min (acute effect), 24,48, 60, and 72 hours after dosing 280 IU/kg 40KDa-PEG-[O]-N8, 280 IU/kg Advate, or vehicle. The blood flow (ml/min) was recorded for 25 min after removal of FeC13, and subsequently the time to occlusion was determined. At 60 and 72 hours after dosing no occlusion occurred in mice dosed with Advate. Mean and SEM of 6-10 mice per group are shown. Time to occlusion between the different groups was compared using Kruskal-Wall is test including Dunn’s post test. * : p&lt;0.05; **: p&lt;0.01. I0107J In conclusion, the haemostatic effect of 40KDa-PEG-[O]-N8 is significantly prolonged compared to Advate in a FeC13 induced injury model in F8-KO mice. 25 □’Ewan pp^a , crnxan ;w:n ατα inia^a pnow pnszn irn nr -jaoa ,ρνιη pxan paoana ma™ na^maa np’ioa .zrtwan rwaa mp’pan ρ-ίΛ axnria ......Gtoca uer □innn Pi? »*···»· · sw ***** ^_

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