IL189202A

Synthetic methods and intermediates for stereoisomeric compounds useful for the treatment of gastrointestinal and central nervous system disorders

Abstract

This record has no abstract on file.

Term

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7 claims: 1 independent, 6 dependent

1
189202/2 Claims 1. A process for preparing (R)-quinuclidin-3-yl 6-((3S,4R)-4-(4-amino-5-chloro-2-methoxybenzamido)-3-methoxypiperidin-1-yl)hexanoate or a salt thereof, comprising:1) converting a compound that is ethyl 4-amino-3-methoxypiperidine-1-carboxylate H2N O OEt 2) 3) to a salt;converting the ethyl 4-amino-3-methoxypiperidine-1-carboxylate salt to ethyl 4-(dibenzylamino)-3-methoxypiperidine-1-carboxylate Bn2N treating the ethyl 4-(dibenzylamino)-3-methoxypiperidine-1-carboxylate with an alkali metal hydroxide to yield 3-methoxy-N,N-dibenzylpiperidin-4-amine Bn2N OCH3 ;J 4) preparing a chiral salt of the cis isomer of 3-methoxy-N,N- dibenzylpiperidin-4-amine by contacting 1 equivalent of 3-methoxy-N,N-dibenzylpiperidin-4-amine with about 0.5 equivalents of a chiral resolving agent and isolating the chiral salt of the cis isomer of 3-methoxy-N,N- dibenzylpiperidin-4-amine thereby produced;5) optionally recrystallizing the product of step 4;6) basifying the product of 4 or 5 to yield the free base form of the product of step 4 or 5 77 189202/2 NH 7) 8) 9) 10) 11) Bn2N' OCH contacting the product of 6 with ethyl 6-bromohexanoate to yield ethyl 6-((3S,4R)-4-(dibenzylamino)-3-methoxypiperidin-1-yl)hexanoate Bn2N O OCH3 OEt esterifying the ethyl 6-((3S,4R)-4-(dibenzylamino)-3-methoxypiperidin-1-yl)hexanoate with (R)-quinuclidin-3-ol and a Lewis acid to yield (R)-quinuclidin-3-yl 6-((3S,4R)-4-(dibenzylamino)-3-methoxypiperidin-1-yl)hexanoate Bn2N OCH3 ;deprotecting the 4-amino group of the product of step 8 to yield (R)-quinuclidin-3-yl 6-[(3S,4R)-4-amino-3-methoxypiperidin-1-yl]hexanoate;acylating the product of 9 with 4-amino-5-chloro-2-methoxybenzoic acid to yield (R)-quinuclidin-3-yl 6-((3S,4R)-4-(4-amino-5-chloro-2-methoxybenzamido)-3-methoxypiperidin-1-yl)hexanoate;and optionally converting the product of step 10 to a salt.

472 paragraphs in 18 sections, as filed

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SYNTHETIC METHODS AND INTERMEDIATES FOR STEREOISOMERIC COMPOUNDS USEFUL FOR THE TREATMENT OF GASTROINTESTINAL AND CENTRAL NERVOUS SYSTEM DISORDERS ARYX THERAPEUTICS, INC. C: 64523 WO 2007/028073 PCT/US2006/034322

SYNTHETIC METHODS AND INTERMEDIATES FOR STEREOISOMERIC COMPOUNDS IJSEFUL FOR THE TREATMENT OF GASTROINTESTINAL AND

CENTRAL NERVOUS SYSTEM DISORDERS

[0001] This application claims the benefit of US provisional application no. 60/713,149, filed August 31,2005, and US provisional application no.60/747,762, filed May 19,2006.

BACKGROUND OF INVENTION

[0002] Cisapride is one of a class of compounds known as benzamide derivatives, the parent compound of which is metoclopramide. U.S. Patent Nos. 4,962,115 and 5,057,525 (collectively "Van Daele" and incorporated by reference in their entireties) disclose N-(3-hydroxy-4-piperidenyl) benzamides of cisapride. Van Daele discloses that these compounds, the pharmaceutically acceptable acid addition salts thereof and the stereochemically isomeric forms thereof, stimulate the motility of the gastrointestinal system.

[0003] As a class, these benzamide derivatives have several prominent pharmacological actions. The prominent pharmacological activities of the benzamide derivatives are due to their effects on the neuronal systems which are modulated by the neurotransmitter serotonin. The role of serotonin, and thus the pharmacology of the benzamide derivatives, has been broadly implicated in a variety of conditions for many years. Thus, research has focused on locating the production and storage sites of serotonin as well as the location of serotonin receptors in the human body in order to determine the connection between these sites and various disease states or conditions.

[0004] In this regard, it was discovered that a major site of production and storage of serotonin is the enterochromaffin cell of the gastrointestinal-mucosa. Itwas also discovered that serotonin has a powerful stimulating action on intestinal motility by stimulating intestinal smooth muscle, speeding intestinal transit, and decreasing absorption time, as in diarrhea.

This stimulating action is also associated with nausea and vomiting.

[0005] Because of their modulation of the serotonin neuronal system in the gastrointestinal tract, many ofthe benzamide derivatives are effective anti-emetic agents and are commonly used to control vomiting during cancer chemotherapy or radiotherapy, especially when highly emetogenic compounds such as cisplatin are used. This action is almost certainly the result of the ability of the compounds to block the actions of serotonin (5HT) at specific sites of action, called the 5HT3-receptor, which was classically designated in the scientific literature as the serotonin M-receptor. Chemotherapy and radiation therapy may induce nausea and vomiting by the release of serotonin from damaged enterochromaffin 1 WO 2007/028073 PCT/US2006/034322 cells in the gastrointestinal tract. Release of the neurotransmitter serotonin stimulates both afferent vagal nerve fibers (thus initiating the vomiting reflex) and serotonin receptors in the chemoreceptor trigger zone of the area postrema region of the brain. The anatomical site for this action of the benzamide derivatives, and whether such action is central (CNS), peripheral, or a combination thereof, remains unresolved (Barnes et al., J. Pharm. Pharmacol. 40: 586-588, 1988). Cisapride, lilce the other benzamide derivatives would appear to be an effective anti-emetic agent based on its ability to modulate the activity of serotonin at the 5HT3 receptor.

[0006] A second prominent action of the benzamide derivatives is in augmenting gastrointestinal smooth muscle activity from the esophagus through the proximal small bowel, thus accelerating esophageal and small intestinal transit as well as facilitating gastric emptying and increasing lower esophageal sphincter tone (Declctor et al., Eur. J. Pharmacol. 147:313-316,1988). Although the benzamide derivatives are not cholinergic receptor . agonists per se, the aforementioned smooth muscle effects may be blocked by muscarinic receptor blocking agents such as atropine or neuronal transmission inhibitors of the tetrodotoxin type which affect sodium channels. Similar blocking activity has been reported for the contractile effects of serotonin in the small intestine. It is currently believed that the primary smooth muscle effects of the benzamide derivatives are the result of an agonist 1 action upon a new class of serotonin receptors referred to as 5HT4 receptors which are located on intemeurons in the myenteric plexus of the gut wall. Activation of these receptors subsequently enhances the release of acetylcholine from parasympathetic nerve terminals located near surrounding smooth muscle fibers, and it is the combination of acetylcholine with its receptors on smooth muscle membranes which is the actual trigger for muscle contraction.

[0007] A discussion of various 5HT receptors, including the 5HT4 receptor can be found in, for example, U.S. Patent Nos. 6,331,401 and 6,632,827, which are incoiporated by reference herein in their entirety.

[0008] Cisapride has been used primarily to treat gastroesophageal reflux disease (GERD). This disease is characterized as the backward flow of the stomach contents into the esophagus. One of the most important factors in the pathogenesis of gastroesophageal reflux disease is a reduction in the pressure barrier due to the failure of the lower esophageal sphincter. Failure of the lower esophageal sphincter can arise due to a low basal pressure, sphincter relaxation, or to a non-compensated increase in intragastric pressure. Other factors 2 WO 2007/028073 PCT/US2006/034322 in the pathogenesis of tlie disease are delayed gastric emptying, insufficient esophageal clearing due to impaired peristalsis and the corrosive nature ofthe reflux material which can damage esophageal mucosa. Cisapride is thought to strengthen tlie anti-reflux barrier and improve esophageal clearance by increasing the lower esophageal sphincter pressure and enhancing peristaltic contractions.

[0009] Because of its activity as a prokinetic agent, cisapride would also appear to be useful to treat dyspepsia, gastroparesis, constipation, post-operative ileus, and intestinal pseudo-obstruction. Dyspepsia is a condition characterized by an impairment of the power or function of digestion that can arise as a symptom of a primary gastrointestinal dysfunction or as a complication due to other disorders such as appendicitis, gallbladder disturbances, or malnutrition. Gastroparesis is a paralysis of the stomach brought about by a motor abnormality in the stomach or as a complication of diseases such as diabetes, progressive systemic sclerosis, anorexia nervosa or myotonic dystrophy. Constipation is a condition . characterized by infrequent or difficult evacuation of feces resulting from conditions such as lack of intestinal muscle tone or intestinal spasticity. Post-operative ileus is an obstruction in the intestine due to a disruption in muscle tone following surgery. Intestinal pseudoobstruction is a condition characterized by constipation, colicky pain, and vomiting, but without evidence of physical obstruction.

[0010] Drug toxicity is an important consideration in the treatment of humans and animals. Toxic side effects (adverse effects) resulting from the administration of drugs include a variety of conditions which range from low grade fever to death. Drug therapy is justified only when the benefits of the treatment protocol outweigh the potential risks associated with the treatment. The factors balanced by the practitioner include the qualitative and quantitative impact of the drug to be used as well as the resulting outcome if the drug is not provided to the individual. Other factors considered include the physical condition of the patient, the disease stage and its history of progression, and any known adverse effects associated with a drug.

[0011] Drug elimination is typically the result of metabolic activity upon the drug and the subsequent excretion of the drug from the body . Metabolic activity can take place within the vascular supply and/or within cellular compartments or organs. The liver is a principal site of drug metabolism. The metabolic process can be categorized into synthetic and nonsynthetic reactions. In nonsynthetic reactions, the drug is chemically altered by oxidation, reduction, 3 WO 2007/028073 PCT/US2006/034322 hydrolysis, or any combination of the aforementioned processes. These processes are collectively referred to as Phase I reactions.

[0012] In Phase II reactions, also known as synthetic reactions or conjugations, the parent drug, or intermediate metabolites thereof, are combined with endogenous substrates to yield an addition or conjugation product. Metabolites formed in synthetic reactions are, typically, more polar and biologically inactive. As a result, these metabolites are more easily excreted via the kidneys (in urine) or the liver (in bile). Synthetic reactions include glucuronidation, amino acid conjugation, acetylation, sulfoconjugation, and methylation.

[0013] More than 90% of a dose of cisapride is metabolized by oxidative N-dealkylation at the piperidine nitrogen or by aromatic hydroxylation occurring on either the 4-fluorophenoxy or benzamide rings.

[0014] The administration of cisapride to a human has been found to cause serious adverse effects including CNS disorders, increased systolic pressure, interactions with other drugs, diarrhea, and abdominal cramping. Further, it has been reported that intravenous administration of cisapride demonstrates the occurrence of additional adverse effects not experienced after oral administration of cisapride (Stacher et al. [1987] Digestive Diseases and Sciences 32(11):1223-1230). It is believed that these adverse effects are caused by the metabolites that result from the oxidative dealkylation or aromatic hydroxylation of the compound which occurs in the cytochrome P450 detoxification system. Cisapride is also subject to a number of undesirable drug/drug interactions that are also a result of metabolism by the cytochrome P450 system.

[0015] Between July 1993 and December 1999, cisapride (PROPULSID, Janssen Pharmaceutica Products, L.P.) was reportedly associated with at least 341 serious cardiac arrhythmias. These arrhythmias include ventricular tachycardia, ventricular fibrillation, torsades de pointes, and QT prolongation. Eighty (80) deaths have been reported. As a result of these adverse effects, the product was voluntarily withdrawn from the open market in the United States; however, the drug is available through an investigational limited access program.

[0016] The safety of 5HT4 receptor agonists with gastrointestinal (GI) prokinetic activity has been limited due to cardiac effects (prolongation of QTc intervals, tachycardia, torsades de pointes) and adverse drug interactions due to hepatic cytochrome P-450 metabolism. A GI prokinetic agent of this class that lacks these liabilities would be very valuable in several therapeutic areas including GERD and gastric emptying disorders. Certain cisapride 4 189202/1 4a derivatives have been described in U.S. Pat. No. 6,552,046 and WO 01/093849 (incorporated by reference herein in their entireties), however further compounds with even more advantageous properties would be desirable.

[0016a] WO/2005/068461 relates to stereoisomeric compounds of formula (X):

and compositions for the safe and effective treatment of various gastrointestinal disorders including, but not limited to, gastroparesis, gastroesophageal reflux and related conditions. The compounds of WO/2005/068461 are also useful in treating a variety of conditions involving the central nervous system.

[0016b] EP 0 640 601 relates to a benzamide derivative represented by general formula (I): N—A-Coor* (I) and a pharmacologically acceptable salt thereof, wherein R1 represents hydrogen or lower alkanoyl; R represents hydrogen or halogen; R represents lower alkoxy; R represents hydrogen or lower alkyl; R5 represents hydrogen, lower alkyl or lower alkoxy; A represents Ci to C7 alkylene which may be substituted by lower alkyl; X represents methylene, oxygen or sulfur; m represents an integer of 0 to 3; n represents an integer of 0 to 3; and p represents an integer of 0 to 2. These compounds are useful because of their activity of enhancing the function of a digestive tract, and a pharmaceutical composition containing the same as the active ingredient is useful for treating digestive system diseases.

[0017] It has now been discovered that certain stereoisomers of one such esterified structural and/or functional analog of cisapride have distinct and particularly advantageous properties. 189202/2 5

BRIEF SUMMARY OF THE INVENTION

[0018] The subject invention provides methods and processes for making compounds and compositions of formula (X), as well as the intermediates useful in preparing the compounds of formula (X), for the safe and effective treatment of various gastrointestinal disorders including, but not limited to, gastroparesis, gastroesophageal reflux and related conditions. The compounds of the subject invention are also useful in treating a variety of conditions involving the central nervous system.

[0019] The compounds of the invention comprise compounds of formula X:

[0020] and pharmaceutically acceptable salts thereof, wherein [0021] the bonds at positions 3 and 4 are cis relative to each other; [0022] L is -(Ci-C6 alkyl)- (in one aspect, -(C3-C5 alkyl)-), -(C1-C6 alkyl)-C(O)-, or -C(O)-(Ci-C6 alkyl)-, wherein each of the alkyl groups is optionally substituted with 1 or 2 groups that are independently halogen, C1-C4 alkoxy, or OH and wherein one carbon in the alkyl portion of L may be replaced by -N(R9)-; [0023] Ri is halogen; [0024] R2 is amino, NH(Ci-C4 alkyl) or N(Ci-C4 alkyl)(Ci-C4 alkyl); [0025] R3 is OH or C1-C4 alkoxy; [0026] R4 is H or methyl; and [0027] R5 is -O-C3-C8 cycloalkyl, -O-heterocycloalkyl, heterocycloalkyl, aryl, -O- aryl, -N(R9)-(Co-C6 alkyl)-C(O)-aryl, or -N(R9)-Co-C6 alkyl-aryl, -O-heteroaryl, -N(R9)-Ci-C6(O)-heteroaryl, or -N(R9)-Co-C6 alkyl-heteroaryl, wherein each of the cyclic groups is unsubstituted or substituted at one or more substitutable positions with C1-C6 alkyl, Ci-C6 alkoxy, halogen, C1-C6 haloalkyl, C1-C6 haloalkoxy, hydroxyl, hydroxy-Ci-CMalkyl, ammo. WO 2007/028073 PCT/US2006/034322 -NH(Ci-C6 alkyl), -N(Ci-C6,allcyl)(Ci-C6 alkyl), -(C0-Cg alkyl)-C(O)Rn, or-O-(C0-Cg alkyl)-C(O)Rn, methylsulfone, Co-Cg-sulfonamide, or NO2; wherein [0028] R9 at each occurrence is independently H or C1-C4 alkyl; [0029] Rn is Ci-Cg alkyl, OH, or [0030] Rn is Cj-Cg alkoxy, optionally substituted with 1 or 2 groups that are independently C1-C4 alkoxy, amino, -NH(Ci~Cg alkyl), -N(Ci-Cg alkyI)(Ci-C6 alkyl), -(C0-Cg alliyl)-C(O)N(R9)-heterocycloallcyl, -O-heterocycloalkyl, -Ci-Cg(O)N(R9)-heteroaryl, or heteroaryl, wherein [0031] the heterocycloalkyl groups are optionally substituted with 1,2, or 3 groups that are independently halogen, Ci-Cg alkyl, Ci-Cg alkoxy, hydroxy, hydroxy Ci-Cg alkyl, Cj-Cg alkoxycarbonyl, -CO2H, CF3, or OCF3, [0032] the heteroaryl group is optionally substituted with 1,2, or 3 groups that are independently halogen; Ci-Cg alkyl, Ci-Cg alkoxy, hydroxy, hydroxy Ci-C6 alkyl, Ci-Cg alkoxycarbonyl, -CO2H, CF3, or OCF3; or [0033] Rn is -O-heterocycloalkyl wherein the heterocycloalkyl is optionally substituted with 1,2, or 3 groups that are independently halogen, Ci-Cg alkyl, C]-Cg alkoxy, hydroxy, hydroxy Cj-Cg alkyl, Cj-Cg alkoxycarbonyl, -CO2H, CF3, or OCF3; and [0034] R2o is Ci-Cg alkoxy (preferably C4-C4 alkoxy, more preferably methoxy), or OH.

[0035] The invention also encompasses compositions comprising at least one compound of fonnula (X) made by the methods and/or processes of the invention and at least one pharmaceutically acceptable excipient, adjuvant, carrier, or solvent.

[0036] The compounds of fonnula (X) that are made by the methods and/or processes of the invention are useful in the treatment or prevention of gastroesophageal reflux disease and substantially reduce adverse effects associated with the administration of cisapride. These adverse effects include, but are not limited to, diarrhea, abdominal cramping and elevations of blood pressure and heart rate.

[0037] Additionally, the compounds and compositions made by the methods and/or processes ofthe invention are useful in treating emesis and other conditions, including but not limited to dyspepsia, gastroparesis, constipation, post-operative ileus and intestinal pseudo-obstruction. As an added benefit, adverse effects associated with the administration of cisapride are also reduced in these methods of treatment.

[0038] Advantageously, the compounds made by the methods and/or processes of the invention are ligands for the 5HT4 receptor and, accordingly, can be used to treat conditions 6 WO 2007/028073 PCT/US2006/034322 mediated through this receptor. These receptors are located in several areas of tlie central nervous system and the modulation of these receptors can be used to effect desired modulations of the CNS.

[0039] Advantageously, compounds made according to the methods and/or processes of the subject invention for making stereoisomeric compounds generally contain an ester moiety that does not detract from the ability of these compounds to provide a therapeutic benefit, but which makes them more susceptible to degradation by serum and/or cytosolic esterases, thereby avoiding the cytochrome P450 drug detoxification system associated with adverse effects caused by cisapride and reducing the incidence of such adverse events.

[0040] The subject invention further provides methods of treatment comprising the administration ofthe compounds of formula (X) made utilizing the methods and/or processes of the invention in th erapeutically effective amounts to individuals in need of treatment for gastroesophageal reflux disease, dyspepsia, gastroparesis, constipation, post-operative ileus, and intestinal pseudo-obstruction; and related conditions.

[0041] Advantageously, the therapeutic compounds made utilizing the methods and/or processes of the subject invention are stable in storage and provide for safer metabolism of the drugs as compared to other drugs; therefore, the compounds of the subject invention can be used with a lower incidence of side effects and toxicity.

[0042] In a further aspect, the subject invention pertains to the breakdown products (preferably metabolic breakdown products), which are formed when the therapeutic compounds made by the methods and/or processes of the subject invention are acted upon by esterases. These breakdown products can be used as described herein to monitor the clearance of the therapeutic compounds from a patient. BRIEF DESCRIPTION OF THE DRAWINGS [0043] Figure 1 is a graph representing the Concentration-Response Curves for 5-HT4

Receptor Agonism of ATI-7505, serotonin, Cisapride, and ATI-7500.

[0044] Figure 2 is a graph representing gastric emptying in fed dogs. The data shown are normalized to the averaged vehicle control times of MMC return values. Values represent mean + SEM of 5 dogs. *p < 0.05 versus vehicle controls [0045] Figure 3 is a graph representing the metabolism of ATI-7505 and ATI-7500, with and without the CYP450 dependent Cofactor, NADPH. The plots show mean and SD μΜ concentrations of ATI-7505 and ATI-7500. ATI-7505 (2 μΜ) was incubated with human 7 WO 2007/028073 PCT/US2006/034322 microsomal protein (1 mg) in the presence or absence of NADPH regenerating system (cofactor).

DETAILED DESCRIPTION OF THE INVENTION

[0046] In a further aspect, the invention provides methods and/or processes for making compounds of Formula (X), as well as intermediates useful in preparing the compounds, of formula (X), wherein [0047] Rs is -O-C3-C8 cycloalkyl, -O-heterocycloalkyl, heterocycloalkyl, wherein the heterocycloalkyl group is selected from piperidinyl, piperazinyl, pyrrolidinyl, aza-bicyclo-octyl, in certain embodiments aza-bicyclo[2.2.2joctyl, aza-bicyclo[3.2.1]octyl, aza-bicyclo-nonyl, aza-bicyclo-decyl, indolinyl, morpholinyl, thiomorpholinyl, S,S-dioxothiomorpholinyl, and imidazolidinyl, -O-aryl, -N(R9)-C(O)-aryl, or -N(R9)-Co-Cg alkybaryl, wherein each of the cyclic groups is unsubstituted or substituted at one or more substitutable positions with Cj-Cg alkyl, Ci-Cg alkoxy, halogen, Cj-Cg haloalkyl, Ci-Cg haloalkoxy, hydroxyl, hydroxy-Ci-C4-alkyl, amino, -NH(Ci-Cg alkyl), -N(Ci-Cg alkyl)(Ci-Cg alkyl), -C(O)Rn, or NO2; wherein [0048] R9 at each occurrence is independently H or C1-C4 alkyl; and [0049] Rn is Cj-Cg alkyl, OH, or [0050] Ru is Cj-Cg alkoxy, optionally substituted with 1 or 2 groups that are independently C1-C4 alkoxy, amino, -NH(Ci-Cg alkyl), -N(Cj-Cg alkyl)(Ci-Cg alkyl), -C(O)N(R9)-heterocycloalkyl, heterocycloalkyl or heteroaryl, wherein [0051] the heterocycloalkyl group is selected from pyrrolidinyl, piperidinyl, piperazinyl, morpholinyl, aza-bicyclo-octyl, in certain embodiments aza-bicyclo[2.2.2]octyl, aza- • bicyclo [3.2.1] octyl, aza-bicyclo-nonyl and aza-bicyclo-decyl, wherein the heterocycloalkyl groups are optionally substituted with 1,2, or 3 groups that are independently halogen, Ci-C6 alkyl, Ci-Cg alkoxy, hydroxy, hydroxy Ci-Cg alkyl, Ci-C6 alkoxycarbonyl, -CO2H, CF3, or OCF3, [0052] the heteroaryl group is selected from pyridyl, pyrimidyl, quinolinyl, isoquinolinyl, and indolyl, wherein the heteroaryl groups are optionally substituted with 1,2, or 3 groups that are independently halogen, Ci-Cg alkyl, Ci-Cg alkoxy, hydroxy, hydroxy Cj-Cg alkyl, Cj-Cg alkoxycarbonyl, -CO2H, CF3, or OCF3; or [0053] Rn is -O-heterocycloalkyl wherein the heterocycloalkyl is selected from piperidinyl, pyrrolidinyl, imidazolidinyl, moipholinyl, aza-bicyclo-octyl, in certain embodiments aza-bicyclo[2.2.2]octyl, aza-bicyclo[3.2.1]octyl, aza-bicyclo-nonyl, aza- 8 WO 2007/028073 PCT/US2006/034322 bicyclo-decyl, and tetrahydrofuranyl, and wherein each heterocycloalkyl group is optionally substituted with 1,2, or 3 groups that are independently halogen, Cj-Ce alkyl, Ci-Ce alkoxy, hydroxy, hydroxy Ci-C6 allcyl, Ci-Cg alkoxycarbonyl, -CO2H, CF3, or OCF3.

[0054] In another aspect, the invention provides methods and/or processes for making compounds of Formula (X), as well as intermediates useful in preparing the compounds of formula (X), wherein Ri is chloro.

[0055] In yet another aspect, the invention provides methods and/or processes for making compounds of Formula (X), as well as intermediates useful in preparing the compounds of formula (X), wherein R2 is amino'; [0056] In still another aspect, the invention provides methods and/or processes for maldng compounds of Formula (X), aswell as intermediates useful in . preparing the compounds of formula (X), wherein R3 is methoxy.

[0057] In another aspect, the invention provides methods and/or processes for making compounds of Formula (X), as well as intermediates useful in preparing the compounds of formula (X), wherein R4 is H or methyl.

[0058] In still yet another aspect, the invention provides methods and/or processes for making compounds of Formula (X), as well as intermediates useful in preparing the compounds of formula (X), wherein Ri is chloro; R2 is amino; R3 is methoxy; and R4 is H or methyl.

[0059] In yet another aspect, the invention provides methods and/or processes for making compounds of Formula (X), as well as intermediates useful in preparing the compounds of formula (X), wherein Ri is chloro; R2 is amino; R3 is methoxy; R4 is H, and L is -(C4-C6 alkyl)-C(O)-.

[0060] In another aspect, the invention provides methods and/or processes for making compounds of formula (X), as well as intermediates useful in preparing the compounds of formula (X), wherein two or more previously described aspects are combined.

[0061] In another aspect, the invention provides methods and/or processes for making compounds of Formula (XI), which are compounds of formula (X) wherein L is -(CH2)s-C(O)-: 9 WO 2007/028073 PCT/US2006/034322

[0062] In yet still another aspect, the invention provides methods and/or processes for malting compounds of formula (XI), as well as intermediates useful in preparing the compounds of formula (XI), wherein Rr is chloro; R2 is amino; R3 is methoxy; and R4 is H or methyl.

[0063] In still another aspect, the invention provides methods and/or processes for malting compounds offormula (XI), as well as intermediates useful in preparing the compounds of formula (XI), wherein R5 is-O-heterocycloalkyl, wherein the heterocycloalkyl group is selected from aza-bicyclo-octyl, in certain embodiments l-aza-bicyclo[2.2.2]oct-3-yl or 8-aza-bicyclo[3.2.1]oct-3-yl, aza-bicyclo-nonyl, aza-bicyclo-decyl, where the aza nitrogen, is optionally substituted with methyl or ethyl; and R4 is H or methyl.

[0064] In still yet another aspect, the invention provides methods and/or processes for making compounds of formula (XI), as well as intermediates useful in preparing the compounds of formula (XI), wherein R5 is -O-heterocycloalkyl, wherein the heterocycloalkyl group is selected from piperidinyl, piperazinyl, or pyrrolidinyl, each of which is unsubstituted or substituted at one or two positions with groups that are independently C1-C4 alkyl, C1-C4 alkoxy, halogen, C1-C4 haloalkyl (in one aspect, CF3), C1-C4 haloalkoxy (in one aspect OCF3), hydroxyl, hydroxy C1-C4 allcyl, amino, -NH(Ci-C4 alkyl), -N(Ci-C4 alkyl)(Ci-C4 alkyl), -(Ci-Cg alkyl)-C(O)Rn, or NO2; and R4 is H or methyl.

[0065] In yet another aspect, the invention provides methods and/or processes for making compounds of formula (XI), as well as intermediates useful in preparing the compounds of formula (XI), wherein R5 is -O-heterocycloalkyl, wherein the heterocycloalkyl group is selected from indolinyl, morpholinyl, thiomorpholinyl, S,S-dioxothiomorpholinyl, and imidazolidinyl, each of which is unsubstituted or substituted at one or two positions with groups that are independently C1-C4 alkyl, C1-C4 alkoxy, halogen, C1-C4 haloalkyl (in one aspect, CF3), C1-C4 haloalkoxy (in one aspect OCF3), hydroxyl, hydroxy C1-C4 allcyl, amino, -NH(Ci-C4 alkyl), -N(Cj-C4 alkyl)(Ci-C4 alkyl), -(Co-Cg alkyl)-C(O)Rn, or NO2; and R4 is H or methyl. 1 [0066] In yet another aspect, the invention provides methods and/or processes for making compounds of formula (XI), as well as intermediates useful in preparing the compounds of 10 WO 2007/028073 PCT/US2006/034322 fonnula (XI), wherein R5 is -O-phenyl, N(R9)-(C0-Cg alkyl)-C(O)-phenyl, or -N(R9)-Co-C4 alkyl-phenyl, wherein the phenyl group is substituted with one or two groups that are independently C1-C4 alkyl, C1-C4 alkoxy, halogen, C1-C4 haloalkyl (in one aspect, CF3), Cr C4 haloalkoxy (in one aspect OCF3), hydroxyl, hydroxy C1-C4 alkyl, amino, -NH(Ci-C4 allcyl), -N(Ci-C4 alkyl)(Ci-C4 alkyl), -(C0-Cg alkyl)-C(O)Rn, or NO2; and R4 and Rg are independently H or methyl.

[0067] In another aspect, the invention provides methods and/or processes for making compounds of formula (XI), as well as intermediates useful in preparing the compounds of formula (XI), wherein R4 is H.

[0068] In yet another aspect, the invention provides methods and/or processes for making compounds of formula (XI), as well as intermediates useful in preparing the compounds of fonnula (X), wherein Rn is Ci-Cg alkoxy, optionally substituted with 1 or 2 groups that are independently C1-C4 alkoxy, amino, -NH(Ci-Cg alkyl), -N(Ci-Cg alkyl)(Ci-Cg alkyl), -(C0-C6 alkyl)-C(O)N(R9)-heterocycloaIkyl, or heterocycloalkyl wherein the heterocycloalkyl group is selected from pyrrolidinyl, piperidinyl, piperazinyl, and morpholinyl, wherein the heterocycloalkyl groups are optionally substituted with 1,2, or 3 groups that are independently halogen, Cj-Cg alkyl, Ci-Cg alkoxy, hydroxy, hydroxy Cj-Cg alkyl, Cj-Cg alkoxycarbonyl, -CO2H, CF3, or OCF3.

[0069] In another aspect, the invention provides methods and/or processes for making compounds of formula (XI), as well as intermediates useful in preparing the compounds of fonnula (XI), wherein two or more previously described aspects are combined.

[0070] In another aspect, the invention provides methods and/or processes for making compounds of Formula (XU), i.e., compounds of fonnula (X) of the following formula, as well as intermediates useful in preparing the compounds of formula (XU):

,R 16 -(C0-CB aIkyl)-C(O)Rn R15 (XII), [0071] wherein R15 is H, Cj-Cg alkyl, Cj-Cg alkoxy, halogen, Cj-Cg haloalkyl (in one aspect CF3), Cj-Cg haloalkoxy (in one aspect OCF3), hydroxyl, hydroxy C1-C4 alkyl, amino, -NH(Ci-Cg alkyl), -N(Ci-Cg alkyl)(Ci-C6 alkyl), methylsulfone, C0-Cg- 11 WO 2007/028073 PCT/US2006/034322 sulfonamide or NO2, and Rie is H or -0-(Co-Ce alkyl)-C(O)Rn, In another aspect, R1S is H.

[0072] In yet another aspect, tlie invention provides methods and/or processes for making compounds of fonnula (XII), as well as intermediates useful in preparing the compounds of formula (XII), wherein R4 and R9 are independently H or methyl and Rn is OH.

[0073] In still yet another aspect, the invention provides methods and/or processes for maldng compounds of formula (XII), as well as intermediates useful in preparing the compounds of formula (XII), wherein R4 and R9 are independently H or methyl and Rn is Ci-Οβ alkoxy, optionally substituted with 1 or 2 groups that are independently C1-C4 alkoxy, amino, -NH(Ci-C6 allcyl), -N(Ci-C6 aJlcyl)(CrC6 alkyl), -(C0-C6 alkyl)-C(O)N(R9)-heterocycloalkyl, or heterocycloalkyl wherein the heterocycloalkyl group is selected from aza-bicyclo-octyl, in certain embodiments l-aza-bicyclo[2.2.2]oct-3-yl or 8-aza-bicyclo[3.2.1]oct-3-yl, aza-bicyclo-nonyl, aza-bicyclo-decyl, where the aza nitrogen is optionally substituted with methyl or ethyl, pyrrolidinyl piperidinyl, piperazinyl, and morpholinyl, wherein the heterocycloalkyl groups are optionally substituted with 1, 2, or 3 groups that are independently halogen, Cj-Cg alkyl, Cj-Cg alkoxy, hydroxy, hydroxy Ci-Cg alkyl, C1-C6 alkoxycarbonyl, -CO2H, CF3, or OCF3, and R4 and R9 are independently Η or methyl. In another aspect, R4, R9, and Rn are as previously defined and R15 is H, Rj is chloro; R2 is amino; and R3 is methoxy.

[0074] In yet still another aspect, the invention provides methods and/or processes for making compounds of formula ,(XII), as well as intermediates useful in preparing the compounds of formula (XII), wherein R4 and R9 are independently H or methyl and Rn is Ci-Cg alkoxy, optionally substituted with 1 or 2 groups that are independently C1-C4 alkoxy, amino, -NH(Ci-Cg alkyl), -N(Ci-C6 alkyl)(Ci-Ce allcyl), or heteroaryl, wherein the heteroaryl group is selected from pyridyl, pyrimidyl, quinolinyl, isoquinolinyl, and indolyl, wherein the heteroaryl groups are optionally substituted witii 1,2, or 3 groups that are independently halogen, Ci-Ce alkyl, Ci-Ce allcoxy, hydroxy, hydroxy Ci-Ce alkyl, Ci-Ce alkoxycarbonyl, - . CO2H, CF3, or OCF3; and R4 and R9 are independently H or methyl. In another aspect, R4, R9, and Rn are as previously defined and R15 is H, Ri is chloro; R2 is amino; and R3 is methoxy. [0075] In still another aspect, the invention provides methods and/or processes for making compounds of formula (XII), as well as intermediates useful in preparing the compounds of formula (XU), wherein at least one of R4 and R9 is H. 12 WO 2007/028073 PCT/US2006/034322

[0076] In another aspect; the invention provides methods and/or processes for making compounds of formula (XU), as well as intermediates useful in preparing the compounds of formula (ΧΠ), wherein two or more previously described aspects are combined.

[0077] In another aspect,! the invention provides methods and/or processes for malting compounds of Formula (XIII), i.e., compounds of formula (X) of the following formula, as well as intermediates useful in preparing the compounds of formula (XIII): ?9 Rie ° /^(Co-C6 alkyl)-C(O)R·,! R15 (xni), [0078] wherein Ri5 is H, Ci-Cg alkyl, Ci-Cg alkoxy, halogen, Ci-Cg haloalkyl (in one aspect CF3), Ci-Cg haloalkoxy (in one aspect OCF3), hydroxyl, hydroxy C1-C4 alkyl, amino, -NH(Ci-Cg alkyl), -N(Ci-Cg alkyl)(Ci-Cg alkyl), or methylsulfone, Co-Cg-sulfonamide, NO2, and Rig is H or-0-(Co-Cg alkyl)-C(O)Rn. In another aspect, R15 is H.

[0079] In yet another aspect, the invention provides methods and/or processes for making compounds of formula (XIII), as well as intermediates useful in preparing the compounds of formula (ΧΠΙ), wherein [0080] R4 and R9 are independently H or methyl, and Rn is OH, C1-C4 alkoxy (in another aspect, C1-C3 alkoxy), or C1-C2 alkoxy-Ci-C3 alkoxy-. In another aspect, R4, R9, and Rn are as previously defined and Ri is chloro; R2 is amino; and R3 is methoxy.

[0081] In still yet another aspect, the invention provides methods and/or processes for malting compounds of formula (ΧΙΠ), as well as intermediates useful in preparing the compounds of formula (XHI), wherein R4 and R9 are independently H or methyl, and Rn is C1-C4 alkoxy substituted with amino, -NH(Ci-Cg alkyl), -N(Ci-Cg alkyl)(Ci-Cg allcyl), aza-bicyclo-octyl, in certain embodiments l-aza-bicyclo[2.2.2]oct-3-yl or 8-aza-bicyclo[3.2.1]oct-3-yl, aza-bicyclo-nonyl, aza-bicyclo-decyl, where the aza nitrogen is optionally substituted with methyl or ethyl; and R4 is H or methyl, pyrrolidinyl, piperidinyl, morpholinyl, pyridyl, or -(Co-Cg allcyl)-C(O)NH-pyrid-4-yl. In another aspect, R4, R9, and Rn are as previously defined and Ri is chloro; R2 is amino; and R3 is methoxy.

[0082] In still another aspect, the invention provides methods and/or processes for making compounds of formula (XIII), as well as intermediates useful in preparing the compounds of formula (XIII), wherein R4 and R9 are independently H or methyl, and Rn is 13 WO 2007/028073 PCT/US2006/034322 C1-C4 alkoxy substituted with amino, -NH(Ci-Cg allcyl), or -N(Ci-Cg alkyl)(Ci-C6 alkyl). In another aspect, R4, R-9, and Rn are as previously defined and Ri is chloro; R2 is aminn; and R3 is methoxy.

[0083] In yet another aspect, the invention provides methods and/or processes for making compounds of formula (ΧΙΠ), as well as intermediates useful in preparing the compounds of formula (XIH), wherein R4 and R9 are independently H or methyl, and Rn is C1-C4 alkoxy substituted with pyrrolidinyl, piperidinyl, moipholinyl, pyridyl, or -(Co-Cg alkyl)-C(O)NH-pyrid-4-yl. In another aspect, R4, R9, and Rn are as previously defined and Ri is chloro; R2 is amino; and R3 is methoxy.

[0084] In still another aspect, the invention provides methods and/or processes for making compounds of formula (XIH), as well as intermediates useful in preparing the compounds of formula (ΧΠΙ), wherein at least one of R4 and R9 is H.

[0085] In another aspect, the invention provides methods and/or processes for making compounds of formula (ΧΙΠ), as well as intermediates useful in preparing the compounds of formula (XHI), wherein two or: more previously described aspects are combined.

[0086] In another aspect, the invention provides methods and/or processes for making compounds of fonnula (XIV), i.e., compounds of formula (X) of the following formula, as well as intermediates useful in preparing the compounds of fonnula (XTV):

[0087] wherein R15 is H, Cj-Cg alkyl, Ci-Cg alkoxy, halogen, Cj-Cg haloalkyl (in one aspect CF3), Ci-Cg haloalkoxy (in one aspect OCF3), hydroxyl, hydroxy C1-C4 alkyl, amino, -NH(Ci-Cg alkyl), -N(Ci-Cg alkyl)(Ci-C6 alkyl), methylsulfone, Co-Cg-sulfonamide, or NO2, and Rjg is H or-0-(Co-Cg alkyl)-C(O)Rn. In another aspect, R15 is H.

[0088] In still another aspect, the invention provides methods and/or processes for making compounds of fonnula (XTV), as well as intermediates useful in preparing the compounds of fonnula (XIV), wherein R4 and R9 are independently H or methyl, and Rn is OH, C1-C4 alkoxy (in another aspect, C1-C3 alkoxy) or Ci-C2 alkoxy-Ci-C3 alkoxy-. In 14 WO 2007/028073 PCT/US2006/034322 another aspect, R4, R9, and Rn are as previously defined and Ri is chloro; R2 is amino; and R3 is methoxy. In still another aspect, at least one of R4 and R9 is H.

[0089] In yet still.another aspect, the invention provides methods and/or processes for making compounds of fonnula (XIV), as well as intermediates useful in preparing the compounds of formula (XIV), wherein R4 and R9 are independently H or methyl, and Rn is C1-C4 alkoxy substituted with amino, -NH(Ci-C6 alkyl), -N(Ci-C6 allcyl)(Cj-C6 allcyl), aza-bicyclo-octyl, in certain embodiments l-aza-bicyclo[2.2.2]oct-3-yl or 8-aza-bicyclo[3.2. l]oct-3-yl, aza-bicyclo-nonyl, aza-bicyclo-decyl, where the aza nitrogen is optionally substituted with methyl or ethyl; and R4 is H or methyl, pyrrolidinyl, piperidinyl, morpholinyl, pyridyl, or -(C0-C6 allcyl)-C(O)NH-pyrid-4-yl. In another aspect, R4, R9, and Rn are as previously defined and Rj is chloro; R2 is amino; and R3 is methoxy.

[0090] In still another aspect, the invention provides methods and/or processes for making compounds of formula (XIV), as well as intermediates useful in preparing the compounds of formula (XTV), wherein R4 and R9 are independently H or methyl, and Rn is C1-C4 alkoxy substituted with amino, -NH(Ci-C6 allcyl), or -N(Cj-C6 alkyl)(Ci-C6 allcyl). In another aspect, R4, R9, and Rn are as previously defined and Ri is chloro; R2 is amino; and R3 is methoxy.

[0091] In yet another aspect, the.invention provides methods and/or processes for making compounds of formula (XIV), as well as intermediates useful in preparing the compounds of formula (XIV), wherein R4 and R9 are independently H or methyl, and Rn is C1-C4 allcoxy substituted with pyrrolidinyl, piperidinyl, morpholinyl, pyridyl, or -(C0-C6 alkyl)-C(O)NH-pyrid-4-yl. In another aspect, R4, R9, and Rn are as previously defined and Rj is chloro; R2 is amino; and R3 is methoxy.

[0092] In still another aspect, the invention provides methods and/or processes for maldng compounds of formula (XTV), as well as intermediates useful in preparing the compounds of formula (XTV), wherein at least one of R4 and R9 is H.

[0093] In another aspect, the invention provides methods and/or processes for making compounds of formula (XTV), as well as intermediates useful in preparing the compounds of formula (XIV), wherein two or more previously described aspects are combined.

[0094] In another aspect, the invention provides methods and/or processes for making compounds of formula (XV), i.e., compounds of formula (X) of the following formula, as well as intermediates useful in preparing the compounds of formula (XV): 15 WO 2007/028073 PCT/US2006/034322

Or (C0-C6 alkyl)-C(O)Rn

(XV) [0095] wherein n is 1 or 2.

[0096] In still another aspect, the invention provides methods and/or processes for making compounds of formula (XV), as well as intermediates useful in preparing the compounds of formula (XV), wherein R4 is H or methyl, and Rn is OH, C1-C4 alkoxy (in another aspect, C1-C3 alkoxy)ior C1-C2 alkoxy-C]-C3 alkoxy-. In another aspect, R4 and Rn are as previously defined and Ri is chloro; R2 is amino; and R3 is methoxy. In still another aspect, at least one of R4 and R9 is H.

[0097] In yet still another aspect, the invention provides methods and/or processes for making compounds of formula (XV), as well as intermediates useful in preparing the compounds of formula (XV), wherein R4 and R9 are independently H or methyl, and Rn is C1-C4 alkoxy substituted with amino, -NH(Ci-Cg alkyl), -N(Ci-C6 alkyl)(Ci-C6 alkyl), aza-bicyclo-octyl, in certain embodiments l-aza-bicyclo[2.2.2]oct-3-yl or 8-aza-bi,cyclo[3.2.1]oct-3-yl, aza-bicyclo-nonyl, aza-bicyclo-decyl, where the aza nitrogen is optionally substituted with methyl or ethyl; and R4 is H or methyl, pyrrolidinyl, piperidinyl, moipholinyl, pyridyl, or -C(O)NH-pyrid-4-yl. L· another aspect, R4, R9, and Ru are as previously defined and Rj is chloro; R2 is amino; and R3 is methoxy.

[0098] In still another aspect, the invention provides methods and/or processes for making compounds of formula (XV), as well as intermediates useful in preparing the compounds of formula (XV), wherein R4 and R9 are independently H or methyl, and Rn is C1-C4 alkoxy substituted with amino, -NH(Ci-C6 alkyl), or -N(Cj-C6 alkyl)(Ci-Cg alkyl). In another aspect, IU, R9, and Rn are as previously defined and Rj is chloro; R2 is amino; and R3 is methoxy.

[0099] In yet another aspect, the invention provides methods and/or processes for making compounds of formula (XV), as well as intermediates useful in preparing the compounds of formula (XV), wherein R4 is H or methyl, and Rn is C1-C4 alkoxy substituted with aza-bicyclo-octyl, in certain embodiments l-aza-bicyclo[2.2.2]oct-3-yl or 8-aza- bicyclo[3.2.1]oct-3-yl, aza-bicyclo-nonyl, aza-bicyclo-decyl, where the aza nitrogen is optionally substituted with methyl or ethyl; and R4 is H or metihyl, pyrrolidinyl, piperidinyl, 16 WO 2007/028073 PCT/US2006/034322 morpholinyl, pyridyl, or -(Co-Ce allcyl)-C(O)NH-pyrid-4-yl. In another aspect, R4, R9, and Rn are as previously defined and Ri is chloro; R2 is amino; and R3 is methoxy.

[0100) In another aspect, the invention provides methods and/or processes for making compounds of formula (XV), as well as intermediates useful in preparing the compounds of formula (XV), wherein two or more previously described aspects are combined.

[0101] In another aspect, the invention provides methods and/or processes for making compounds, as well as intermediates useful in preparing the compounds, according to any one of formulas (X), (XI), (XII), (XUI), (XIV) or (XV), wherein Ri, R2, and R3 are oriented on the phenyl ring as follows:

O

[0102] In another aspect, the invention provides methods and/or processes for making compounds, as well as intermediates useful in preparing the compounds, according to any one of formulas (X), (XI), (XU), (XUI), (XIV) or (XV), wherein bond 3 has the “S” configuration and bond 4 has the “R” configuration.

[0103] In still another aspect, the invention provides methods and/or processes for making compounds, as well as intermediates useful in preparing the compounds, according to any one of formulas (X), (XI), (XU), (XUI), (XTV) or (XV), wherein Ri, R2, and R3 are oriented on the phenyl ring as follows:

[0104] and bond 3 has the “S” configuration and bond 4 has the “R” configuration. [0105] In another aspect, the invention provides methods and/or processes for making compounds, as well as intermediates useful in preparing the compounds, according to any one of formulas (X), (XI), (XII), (ΧΠΙ), (XIV) or (XV), wherein bond 3 has the “R” configuration and bond 4 has the “S” configuration.

[0106] In another aspect, the invention provides methods and/or processes for maldng compounds, as well as intermediates useful in preparing the compounds, according to any one of formulas (X), (XI), (XII), (XIII), (XIV) or (XV), wherein Ri, R2, and R3 are oriented on the phenyl ring as follows: 17 WO 2007/028073 PCT/US2006/034322 Ο

[0107] and bond 3 has the “R” configuration and bond 4 has the “S” configuration. [0108] In still another aspect, the invention provides methods and/or processes for making compounds, as well as intermediates useful in preparing Hie compounds, of formula (X), wherein Ri is chloro; R2 is amino; R3 is methoxy; R4 is H, and Rb R2, and R3 have the following orientation on the phenyl ring: r3 ,and [0109] L is -(C3-C5 alkyl)- wherein one carbon may be replaced by -NfRs)-, or -(C2-Cg alkyl)-C(O)-. In yet another aspect, the Rl, R2, and R3 are as defined and oriented on the phenyl ring as previously described, R4 is as previously defined and R5 is-O-heterocycloalkyl, wherein the heterocycloalkyl group is selected from aza-bicyclo-octyl, in certain embodiments l-aza-bicyclo[2.2.2]oct-3-yl or 8-aza-bicyclo[3.2.1]oct-3-yl, aza-bicyclo-nonyl, aza-bicyclo-decyl, where the aza nitrogen is optionally substituted with methyl or ethyl, piperidinyl, piperazinyl, and pyrrolidinyl, wherein the piperidinyl, piperazinyl, and pyrrolidinyl groups are unsubstituted or substituted at one or two positions with groups that are independently C1-C4 allcyl, C1-C4 alkoxy, halogen, C1-C4 haloalkyl, C1-C4 haloalkoxy, hydroxyl, hydroxy C1-C4 alkyl, amino, -NH(Cj-C4 alkyl), -N(Ci-C4 alkyl)(Ci-C4 alkyl), -(Co-Cg alkyl)-C(O)Rn, orNO2, wherein [0110] Rn is Ci-Cg alkoxy, optionally substituted with 1 or 2 groups that are independently C1-C4 alkoxy, amino, -NH(Ci-Cg allcyl), -N(Ci-Cg alkyl)(Ci-Cg alkyl), -(Co-Cg aUcyl)-C(O)N(R9)-heterocycloallcyl, or heterocycloalkyl wherein the heterocycloalkyl group is selected fiom aza-bicyclo-octyl, in certain embodiments 1-aza-bicyclo[2.2.2]oct-3-yl or 8-aza-bicyclo[3.2.1]oct-3-yl, aza-bicyclo-nonyl, aza-bicyclo-decyl, where the aza nitrogen is optionally substituted with methyl or ethyl; and R4 is H or methyl, pyrrolidinyl, piperidinyl, piperazinyl, and morpholinyl, wherein the heterocycloalkyl groups are optionally substituted with 1,2, or 3 groups that are independently halogen, Cj-Cg alkyl, Cj-Cg alkoxy, hydroxy, hydroxy Cj-Cg alkyl, Ci-Cg alkoxycarbonyl, -CO2H, CF3, or OCF3. 18 WO 2007/028073 PCT/US2006/034322 [0111] In still yet another aspect, the invention provides methods and/or processes for maldng compounds, as well as intermediates useful in preparing tlie compounds, of formula (X), wherein [0112] Rj is chloro; R2 is amino; R3 is methoxy; R4 is H, and Rb R2, and R3 have the following orientation on the phenyl ring:

[0113] L is -(C3-C5 alkyl)- wherein one carbon may be replaced by.-N(R9)-, or -(C2-C6 alkyl)-C(O)-. In yet another aspect, the Ri, R2, and R3 are as defined and oriented on the phenyl ring as previously described, R4 is as previously defined and R5 is heterocycloalkyl, which is selected from aza-bicyclo-octyl, in certain embodiments 1-aza-bicyclo[2.2.2]oct-3-yl or 8-aza-bicyclo[3.2.1]oct-3-yl, aza-bicyclo-nonyl, aza-bicyclo-decyl, where the aza nitrogen, is optionally substituted with methyl or ethyl.

[0114] In still yet another aspect, the invention provides methods and/or processes for making compounds of fonnula (X), as well as intermediates useful in preparing the compounds of fonnula (X), wherein [0115] Ri is chloro; R2 is amino; R3 is methoxy; R4 is H, and Ri, R2, and R3 have the following orientation on the phenyl ring:'

[0116] L is -(C3-C5 alkyl)- wherein one carbon may be replaced by _N(Rc>)-, or -(C2-Cg alkyl)-C(O)-. In yet another aspect, the Ri, R2, and R3 are as defined and oriented on the phenyl ring as previously described, R4 is as previously defined and Rs is-N(R9)-Co-C4 alkyl-aryl or -N(R9)-(Co-C6 alkyl)-C(O)-aryl, wherein the aryl group is unsubstituted or substituted at one or more substitutable positions with Ci-Cg allcyl, Cj-Cg alkoxy, halogen, Ci-Ce haloalkyl, Ci-C^ haloalkoxy, hydroxyl, hydroxyalkyl, amino, -NH(Ci-C6 alkyl), -N(Ci-Ce alkyl)(Ci-C6 alkyl), -(Co-Ce allcyl)-C(O)Ru, orN02. In still another aspect, the aryl group is a phenyl substituted with -(C0-C6 aIkyl)-C(O)Rn and optionally substituted with 1 or 2 groups independently selected from Cj-Cg allcyl, C4-C6 allcoxy, halogen, CF3, OCF3, hydroxyl, hydroxyalkyl, amino, -NH(Ci-C4 alkyl), -N(Ci-C4 alkyl)(Ci-C4 alkyl), or NO2, wherein 19 WO 2007/028073 PCT/US2006/034322 [0117] Rn is Ci-Cg alkoxy, optionally substituted with 1 or 2 groups that are independently C1-C4 alkoxy, amino, -NH(Ci-Cg alkyl), -N(Ci-Cg alkyl)(Ci-C6 alkyl), -(Co-Cg allcyl)-C(O)N(R9)-heterocycloalkyl, or heterocycloalkyl wherein the heterocycloalkyl group is selected from pyrrolidinyl, piperidinyl, piperazinyl, and moipholinyl, wherein the heterocycloalkyl groups are optionally substituted with 1,2, or 3 groups that are independently halogen, Cj-Cg alkyl, Cj-Cg alkoxy, hydroxy, hydroxy C1-C6 allcyl, Ci-Cg alkoxycarbonyl, -CO2H, CF3, or OCF3. In a preferred aspect the -(Co-Cg alkyl)-C(O)Rj 1 group is attached to position 4 of the phenyl ring.

[0118] In still another aspect, the orientation of bonds 3 and 4 of a compound made according to the methods and/or processes of the invention is as follows: OCH3 [0119] In a preferred aspect, the orientation of bonds 3 and 4 of a compound made according to the methods or processes of the invention is as follows: OCH3 [0120] The invention further provides methods for treating emesis, dyspepsia, gastroparesis, constipation, intestinal pseudo-obstruction, gastroesophageal reflux, or postoperative ileus, the method comprising administering a therapeutically effective amount of a compound or salt according of formula (X) that is made according to the methods and/or processes of the invention to a patient in need of such treatment.

[0121] The subject invention provides methods and/or processes for making compounds that are more susceptible to degradation by serum and/or cytosolic esterases than cisapride, thus avoiding the adverse effects associated with metabolism by cytochrome P450.

[0122] Advantageously, the therapeutic compounds made according to the methods and/or processes of the subject invention are stable in storage but have a relatively short half-life in the physiological environment; therefore, the compounds of the subject invention can be used with a lower incidence of side effects and toxicity.

[0123] In a preferred aspect of the subject invention, therapeutic stereoisomeric compounds that are made according to the methods and/or processes of the invention are provided, which are useful in the treatment of gastroesophageal reflux disease and that 20 WO 2007/028073 PCT/US2006/034322 contain an ester group, which is susceptible to degradation by esterases, thereby breaking / down the compound and facilitating its efficient removal from the treated individual. In a preferred aspect, the therapeutic stereoisomeric compounds are metabolized by the Phase I drug detoxification system.

[0124] A further aspect of the subject invention pertains to the breakdown products (preferably metabolic breakdown products, i.e., metabolites, generally acids of parent esters) that are produced when the therapeutic compounds made by the methods and/or processes of the subject invention are acted upon by an esterase. The presence of these breakdown products in the urine or serum can be used to monitor the rate of clearance of the therapeutic compound fiom a patient.

[0125] Degradation of the compounds made according to the methods and/or processes of the subject invention by esterases is particularly advantageous for drug metabolism because these enzymes are ubiquitously distributed and their activity is not dependent on age, gender, or disease state to the same extent as oxidative hepatic drug metabolism.

[0126] The subject invention further provides methods of treating disorders, such as gastroesophageal reflux disease comprising the administration of a therapeutically effective amount of at least one stereoisomeric structural and/or functional analog of cisapride to an individual in need of treatment. In a specific aspect, the subject invention provides stereoisomeric structural and/or functional analogs of cisapride and pharmaceutical compositions of these esterified compounds.

[0127] The subject invention further provides materials and methods for the treatment of emesis and such other conditions, including but not limited to dyspepsia, gastroparesis, constipation, and intestinal pseudo-obstruction, while substantially reducing adverse effects associated with the administration of cisapride.

[0128] In a preferred aspect of the subject invention, methods and/or processes for making therapeutic stereoisomeric compounds are provided, which compounds are useful in the treatment of gastroesophageal reflux, dyspepsia, gastroparesis, constipation, postoperative ileus, and intestinal pseudo-obstruction and which contain an ester group which is acted upon by esterases thereby breaking down the compound and facilitating its efficient removal fiom the treated individual.

[0129] The subject invention further provides methods of synthesizing the advantageous compounds of file subject invention. Particularly, methods of producing and purifying such stereoisomeric compounds are taught. Methods of adding such ester moieties and of 21 · WO 2007/028073 u···· it.,.. »z waul»/ „3k-k PCT/US2006/034322 xvcjl. i\o. producing and purifying stereoisomers, are well known to the sldlled artisan and can be readily carried out utilizing the guidance provided herein.

Preferred Compounds [0130] In a preferred aspect, the present invention provides methods and/or processes for making isolated stereoisomers of Compound I, as well as intermediates useful in preparing the stereoisomers, which contains three chiral centers.

Compound I

[0131] Two of the chiral centers exist in cisapride and norcisapride and are in the cis configuration in the active drugs:

f±)-Norcisapride [0132] Thus, for example, pharmaceutically active norcisapride is a racemic mixture of the two cis enantiomers:

[0133] In one aspect, the current invention is particularly concerned with providing methods and/or processes for making compounds with a particular configuration at the third chiral center, in the quinuclidinol moiety, as well as intermediates useful in preparing such compounds. This group is eliminated in the conversion to the acid metabolite referred to herein as ± Compound IL- 22 WO 2007/028073 PCT/US2006/034322

Compound H

[0134] While Compound I stereoisomers can be made by conjugating R or S quinuclidinol to (+)- or (-)-norcisapride, giving Compounds III, IV, V and VI, preferred methods are described below and do not utilize a cisapride core.

(3R,4Sl3'R)-6-[4-(4-Amino-5-chloro-2-methoxy-benzoylamino)-3-rnethoxy-piperidin-1-yl]-hexanoic acid 1-aza-bicyclo[2.2.2]oct-3-yl ester

compound III: (-)(R)-compound I

(3S,4R,3'R)-6-[4-(4-Amino-5-chloro-2-rnethoxy-benzoylamino)-3-methoxy-piperidin-1-ylJ-hexanoic acid 1-aza-bicyclo[2;2.2Joct-3-yl ester compound IV: (+)(R)-compound I

(3R,4S,3'S)-6-[4-(4-Amino-5-chloro-2-methoxy-benzoylamino)-3-methoxy-piperidin-1-yl]-hexanoic acid 1-aza-bicyclo[2.2.2]oct-3-yl ester compound V: f-)fS)-compound 23 WO 2007/028073 PCT/US2006/034322

(SS+R.S'SJ-O-I+f+Amino-S-chloro^-methoxy-benzoylaminoJ-S-methoxy-piperidin-l-yll-hexanoic acid 1-aza-bicyclo[2.2.2]oct-3-yl ester

compound VI: (+)(S)-compound I

[0135] In a preferred aspect, the subj ect invention pertains to methods and/or processes for making stereoisomerically isolated compounds, as well to the intermediates useful in preparing such compounds, and compositions comprising such compounds. The isolated stereoisomeric forms of the compounds made according to the methods and/or processes of the invention are substantially free from one another (i.e., in stereoisomeric excess). In other words, the “R” forms of the compounds are substantially free from the “S” forms of the compounds and are, thus, in stereoisomeric excess of the “S” forms. Conversely, “S” forms of the compounds are substantially free of “R” forms of the compounds and are, thus, in . stereoisomeric excess of the “R” forms. In one aspect of the invention, the isolated stereoisomeric compounds made according to the methods and/or processes of the invention are in at least about 80% stereoisomeric excess. In a preferred aspect, the compounds made according to the methods and/or processes of the invention are in at least about 90% stereoisomeric excess. In a more preferred aspect, the compounds made according to the methods and/or processes of the invention are in at least about 95% stereoisomeric excess. In an even more preferred aspect, the compounds made according to the methods and/or processes of the invention are in at least about 97.5% stereoisomeric excess. In a most preferred aspect, the compounds made according to the methods and/or processes of the invention are in at least about 99% stereoisomeric excess. Similarly, the “(+)” and “(-)” forms of the compounds are also provided in stereoisomeric excess. 24 WO 2007/028073 PCT/US2006/034322 [0136] As described herein, tlie various stereoisomers made according to the methods and/or processes of the invention have particular unexpected properties that, advantageously, can be used to customize treatment for a particular set of circumstances. Thus, for example, compounds containing the (3’R)-isomer in the quinudidinyl ester moiety, i.e., compounds ΙΠ and IV, are rapidly metabolized by esterases in human plasma, whereas compounds containing the (3’S)-isomer of quinuclidinol, i.e., compounds V and VI, undergo a much slower metabolism.

[0137] Thus, the (3’R)-isomers of compound I can be used when a short-duration of action is preferred, for example stimulation of gastric motility in an acute episode, such as pulsatile administration to patients with acute gastroparesis, or in acute gastroesophageal reflux. Another advantage of rapid metabolism by esterases to an substantially less active metabolites, i.e., compound H, is the very low probability of drug-drug interactions and toxicity. Therefore these short-acting (R)-isomers can be advantageously used as an intravenous formulation for treating gastroesophageal reflux in premature newborns, which are notoriously unable to metabolize drugs as well as adults because their CYP450 system is not fully developed. In these newborn, a drug having rapid metabolism by a system other than CYP450, e.g., esterases, is a.great advantage. On the other hand, the (3’S)-isomers of compound I made according to the methods and/or processes of the invention are best used in chronic situations of the same ailments, for example gastroparesis in diabetic patients or cancer patients under opiates, or in chronic gastroesophageal reflux in patients who need 24-hour coverage.

[0138] In addition to their differences in metabolic fate, these separate isomers also have different binding affinities for the 5-HT4 receptor, thus suggesting different activities as well, and therefore different therapeutic uses. Thus, in a decreasing order of affinity for the 5-HT4 receptor, the isomers can be ranked as follows (in parentheses are the binding constant Ki values); compound IV (1.4nM), compound VI (3.4nM), compound ΙΠ (28nM), and compound V (72nM). These binding experiments were performed using the radiolabel displacement method described in standard textbooks and easily reproducible by persons skilled in the art of molecular biology.

[0139] As a conclusion to these considerations: when the 3 and 4 positions are cis relative to each other, compound I is a mixture of 4 isomers, consisting of 2 pairs of enantiomers. The first pair of enantiomers is (+)(R)-compound I and (-)(S)-compound I (compounds TV and V, respectively), the second pair of enantiomers is (-)(R)-compound I and (+)(S)-compound I 25 WO 2007/028073 PCT/US2006/034322 (compounds ΠΙ and VI, respectively). Within each enantiomeric pair, each separate enantiomer has different properties regarding both their rate of hydrolysis by esterases and regarding their affinity at the 5-HT4 receptor. These different properties give them separately advantageous therapeutic uses which are not interchangeable, i.e., which are specific to each isomer, and which are not applicable to the racemic mixture. These differences of affinity at the receptor and these differences in metabolic rates are not predictable and neither is it possible to dissect these properties when testing the racemic mixture.

[0140] Another aspect of the invention comprises a method for preparing a compound for formula ΙΓ

(ΙΓ) [0141] comprising converting a compound of formula (Γ)

[0142] or its salt to a compound of formula (ΙΓ) or its salt, respectively, wherein Xi is a nitrogen protecting group and X2 is selected from the group consisting of hydrogen and a nitrogen protecting group (wherein commonly known and used N protecting groups can be used, e.g., N-benzyl; N-nitrobenzyl; N-BoC; N-oxide; N-paramethoxybenzyl; N-benzylsulfonyl) (preferably both Xj and X2 are benzyl), and R is (Ci-Cg)alkyl, preferably (Cj-C^alkyl, more preferably ethyl. In another embodiment, Xj and X2 are not both benzyl.

[0143] The invention also comprises compounds of formula IT

(ir) [0144] and salts thereof, wherein Xj is a nitrogen protecting group and X2 is selected from the group consisting of hydrogen and a nitrogen protecting group (wherein commonly known and used N protecting groups can be used, e.g, N-benzyl; N-uitrobenzyl; N-BoC; N-oxide; N-paramethoxybenzyl; N-benzylsulfonyl) (preferably both 26 WO 2007/028073 PCT/US2006/034322

Xi and X2 are benzyl), and R is (Ci-Csjalkyl, preferably (CrCealkyl, more preferably ethyl. In another embodiment, Xi and X2 are not both benzyl.

[0145] In another aspect, the invention comprises a method of making a compound of formula ΙΙΓ r 7 χι-γ'-γ x2 0·^ (HI'); [0146] comprising treating the compound of formula (IT)

(IT) [0147] with an alkali metal hydroxide or hydride (e.g., NaOH, KOH, sodium or potassium hydride, lithium aluminum hydride, etc.) to yield the compound of formula (ΠΓ), wherein Xi is a nitrogen protecting group and X2 is selected from the group consisting of hydrogen and a nitrogen protecting group (wherein commonly known and used N protecting groups can be used, e.g., N-benzyl; N-nitrobenzyl; N-BoC; N-oxide; N-paramethoxybenzyl; N-benzylsulfonyl) (preferably both X] and X2 are benzyl), and R is (Ci-Csjalkyl, preferably (Ci-C4)alkyl, more preferably ethyl. In another embodiment, Xi and X2 are not both benzyl.

[0148] We have surprisingly found with experiments on

[0149] that using at least 12 equivalents of KOH and an 8-fold excess of isopropyl alcohol under reflux in the hydrolysis reaction results in virtually 100% conversion with virtually no impurities. Using lesser amounts of KOH (e.g., 5 and 10 eq) gave conversions only in the range of about 83-98% with impurities ranging from 1.9% to 7.3%. · , ’ [0150] The invention also comprises a compounds of formula HI' (Iff); x2 0- 27 WO 2007/028073 PCT/US2006/034322 [0151] and salts thereof, wherein Xi is a nitrogen protecting group and X2 is selected from the group consisting of hydrogen and a nitrogen protecting group (wherein commonly known and used Nprotecting groups.can be used, e.g., N-benzyl; N-nitrobenzyl; N-BoC; N-oxide; N-paramethoxybenzyl; N-benzylsulfonyl) (preferably both Xj and X2 are benzyl). In another embodiment, Xj and X2 are not both benzyl.

[0152] In another aspect, tlie invention comprises a method of malting a compound of formula IH "

NH

Λ2 (ΠΙ"); [0153] comprising a) contacting a compound of formula ΠΓ

(ΙΙΓ) [0154] with a chiral resolving agent (e.g, tartaric acid, mandelic acid, Mosher’s acid, camphor sulphonic acid, etc.) to yield a chiral salt of III" and isolating the chiral salt of [0155] b) optionally recrystallizing the product of a); and [0156] c) contacting the product of a) or b) with a base to yield the compound for formula [0157] wherein Xj is a nitrogen protecting group and X2 is selected from the group consisting of hydrogen and a nitrogen protecting group (wherein commonly known and used N protecting groups can be used, e.g, N-benzyl; N-nitrobenzyl; N-BoC; N-oxide; N-paramethoxybenzyl; N-benzylsulfonyl) (preferably both Xj and X2 are benzyl). In another embodiment, Xi and X2 are not both benzyl.

[0158] Preferably in this aspect of the invention, the chiral resolving agent is (+)-2,3- dibenzoyl-D-tartaric acid and the chiral salt of ΗΓ is a (3S,4R)-enantiomer (+)-2,3-dibenzoyl-D-tartrate salt.

[0159] It has been surprisingly found that the use of the chiral salt of (+)-2,3-dibenzoyl-D-tartaric acid, preferably in an amount of one equivalent for two equivalents of compound of structure ΗΓ, leads to enhanced yield as compared to other chiral resolving agents. The use of one equivalent of (+)-2,3-dibenzoyl-D-tartaric acid with two equivalents of ΠΓ results a yield of more than three times that obtained when one equivalent of (+)-2,3-dibenzoyl-D- 28 WO 2007/028073 PCT/US2006/034322 tartaric acid is contacted with two equivalents of ΙΙΓ. Thus, in a preferred embodiment of making the compound of formula IH", one equivalent of a chiral resolving agent (preferably (+)-2,3-dibenzoyl-D-tartaric acid) and two equivalents of the compound of formula ΠΓ are used.

[0160] In another aspect, the invention comprises tlie compound of formula III''

N X- θ (Ill") [0161] and salts thereof, wherein Xj is a nitrogen protecting group and X2 is selected from the group consisting of hydrogen and a nitrogen protecting group (wherein commonly known and used N protecting groups can be used, e.g., N-benzyl; N-nitrobenzyl; N-BoC; N-oxide; N-paramethoxybenzyl; N-benzylsulfonyl) (preferably both Xi and X2 are benzyl). In another embodiment, Xi and X2 are not both benzyl.

[0162] In another aspect, the invention comprises a method of making a compound of formula IV'

[0163] comprising contacting a compound for formula

X CJ XlV'Y X2 (WT); [0164] with a (C i-Cg) alkyl 6-halohexanoate (wherein the halo is preferably bromo) to yield a compound of formula (IV'), wherein R' is (Ci-Cg)alkyl (preferably ethyl), and Xi is a nitrogen protecting group and X2 is selected from the group consisting of hydrogen and a nitrogen protecting group (wherein commonly known and used N protecting groups can be used, e.g, N-benzyl; N-nitrobenzyl; N-BoC; N-oxide; N-paramethoxybenzyl; N-benzylsulfonyl) (preferably both Xi and X2 are benzyl). In another embodiment, Xi and X2 are not both benzyl.

[0165] In another aspect, the invention a compound of formula IV' 29 WO 2007/028073 PCT/US2006/034322

[0166] and salts thereof, wherein R' is (Ci-Cgjalkyl (preferably ethyl), and Xi is a nitrogen protecting group and X2 is selected from the group consisting of hydrogen and a nitrogen protecting group (wherein commonly known and used N protecting groups can be used, e.g., N-benzyl; N-nitrobenzyl; N-BoC; N-oxide; N-paramethoxybenzyl; N-benzylsulfonyl) (preferably both Xi and X2 are benzyl). In another embodiment, Xi and X2 are not both benzyl.

[0167] In another aspect, the invention comprises a method of making a compound of formula V'

0 O/z,

N X2 [0168] comprising contacting a compound of formula IV' (V');

[0169] with (R)-quinuclidin-3-ol and a Lewis acid (e.g., a titanium tetraalkoxide (e:g., Ti(OiPr)4 (titanium tetraisopropoxide) and Ti(OEt)4 (titanium tetraethoxide)), TsOH (para toluenesulfonic acid), K2CO3, and cat. DMAP (catalytic 4-dimethylaminopyridine)) in an organic solvent (e.g, toluene), wherein R' is (Ci-Cs)alkyl (preferably ethyl), and Xi is a nitrogen protecting group and X2 is selected from the group consisting of hydrogen and a nitrogen protecting group (wherein commonly known and used N protecting groups can be used, e.g., N-benzyl; N-nitrobenzyl; N-BoC; N-oxide; N-paramethoxybenzyl; N-benzylsulfonyl) (preferably both Xi and X2 are benzyl). In another embodiment, Xi and X2 are not both benzyl.

[0170] In another aspect, the invention comprises a compound of fonnula V'

(V'); 30 WO 2007/028073 PCT/US2006/034322 [0171] and salts thereof, wherein Xj is a nitrogen protecting group and X2 is selected from the group consisting of hydrogen and a nitrogen protecting group (wherein commonly known and used N protecting groups can be used, e.g, N-benzyl; N-nitrobenzyl; N-BoC; N-oxide; N-paramethoxybenzyl; N-benzylsulfonyl) (preferably both Xj and X2 are benzyl). In another embodiment, Xj and X2 are not both benzyl.

[0172] In another aspect, the invention comprises a method of making a compound of formula VI'

[0173] comprising removing groups Xj and X2 from a compound of formula V'

[0174] wherein Xi is a nitrogen protecting group and X2 is selected from the group consisting of hydrogen and a nitrogen protecting group (wherein commonly known and used N protecting groups can be used, e.g, N-benzyl; N-nitrobenzyl; N-BoC; N-oxide; N-paramethoxybenzyl; N-benzylsUlfonyl) (preferably both Xj and X2 are benzyl). In another embodiment, Xj and X2 are not both benzyl.

[0175] In a preferred embodiment of this aspect of the invention, Xj and X2 are benzyl and are removed by treatment of V' with Efe/Pd/C or ammonium formate/Pd are examples) to yield (R)-quinuclidin-3-yl 6-[(3S,4R)-4-amino-3-methoxypiperidin-l-yl]hexanoate. We have surprisingly found by hydrogenation with Ek/Pd/C this method provides significant advantages over debenzylating methods using, for example, ammonium formate. Such methods are frequently messy and require silica gel column purification to remove reagents (e.g, ammonium formate), which is impractical for large scale production. Hydrogenation with H2/Pd/C is extremely clean and does not require column purification.

[0176] In another aspect, the invention comprises a method of malting (R)-quinuclidin-3-yl 6-((3S,4R)-4-(4-amino-5-chloro-2-methoxybenzamido)-3-methoxypiperidin-l-yl)hexanoate (VII') comprising contacting a compound of formula VI'

I 31 WO 2007/028073 PCT/US2006/034322 h2n

Ν'

x (VI') [0177] with 4-amino-5-chloro-2-methoxybenzoic acid. Preferably said contacting is with EDCI (l-ethyl-3-(3’-dimethylaminopropyl)carbodiimide), HOBt (1-hydroxbenzotriazole), HOSU (N-hydroxysuccinimide), HONB (N-hydroxy-5-norbene-endo-2,3-dicarboxamide), isobutyl chloroformate, pivaloyl chloride, or DCC (dicyclohexylcarbodiimide). Most preferably said contacting is with a pivaloyl halide (preferably pivaloyl chloride). It was unexpectedly found that the use of pivaloyl chloride gave a significantly cleaner reaction profile and the product was much easier to purify compared to other acylating agents. The result is a higher yield and significantly greater purity of the compound compared to methods employing other acylating agents.

[0178] Compounds of formulae T, IT, HI', HI", IV', V', and VI' are all useful intermediates in the production of (R)-quinuclidin-3-yl 6-((3 S,4R)-4-(4-amino-5-chloro-2-methoxybenzamido)-3 -methoxypiperidin-1 -yl)hexanoate.

[0179] In another aspect, the invention comprises combinations of the foregoing methods. As used herein, a method described as X-Y is a method comprising the combination of making a compound of formula ‘X” followed by a method of making a compound of formula “Y” and, similarly X-Y-Z is the method X-Y followed by the method of making the compound of formula “Z,” etc. Accordingly, this aspect of the invention includes, without

[0180] Another aspect of the invention comprises a method for preparing(R)-quinuclidin- 3-yl 6-((3 S,4R)-4-(4-amino-5-chloro-2-methoxybenzamido)-3 -methoxypiperidin-1 -yl)hexanoate or a salt thereof, comprising: [0181] 1) optionally converting a compound of fonnula (Γ)

O

R

[0182] to a salt, wherein R is'(Ci-Cg)alkyl (preferably (Ci-Cg)alkyl, (Ci-C^alkyl, or ethyl); 32 WO 2007/028073 PCT/US2006/034322 [0183] 2) converting the compound of formula (F) or its salt to a compound of formula (IF)

(IF) [0184] or its salt, respectively, wherein Xi is a nitrogen protecting group and X2 is selected from the group consisting of hydrogen and a nitrogen protecting group (wherein commonly known and used N protecting groups can be used, e.g., N-benzyl; N-nitrobenzyl; N-BoC; N-oxide; N-paramethoxybenzyl; N-benzylsulfonyl) (preferably both Xi and X2 are benzyl); [0185] 3) treating the compound of formula (IF) with an alkali metal hydroxide or hydride (e.g., NaOH, KOH, sodium or potassium hydride, lithium aluminum hydride, etc.) to yield a compound of formula (HF) X2 (HF); [0186] 4) producing a chiral salt of HI' by treating the compound of formula (HI') with a chiral resolving agent (e.g., tartaric acid, mandelic acid, Mosher’s acid, camphor sulphonic acid, etc., or, preferably, (+)-2,3-dibenzoyl-D-tartaric acid to yield a chiral salt (e.g., (3S,4R)-enantiomer (+)-2,3-dibenzoyl-D-tartrate salt when (+)-2,3-dibenzoyl-D-tartaric acid is the chiral resolving agent)) and isolating the cis isomer of IH' thereby produced; [0187] 5) optionally recrystallizing the product of 4; [0188] 6) basifying the product of 4 or 5 to yield the free base form of the product of 4 or 5; [0189] 7) contacting the product of 6 with a (Ci-Cg)alkyl 6-halohexanoate (wherein the halo is preferably bromo) to yield a compound of formula (TV')

X2 (TV"); [0190] wherein R' is (Cj-Csjalkyl (preferably ethyl); 33 WO 2007/028073 PCT/US2006/034322 [0191] 8) treating the product of 7 with (R)-quinuclidin-3-ol and a Lewis acid (e.g., a titanium tetraalkoxide (e.g, Ti(OiPr)4 (titanium tetraisopropoxide) and Ti(OEt)4 (titanium tetraethoxide)), TsOH (para toluenesulfonic acid), K2CO3, and cat. DMAP (catalytic 4-dimethylaminopyridine)) in an organic solvent (e.g, toluene) to yield a compound of formula (V')

[0192] 9) deprotecting the 4-amino group of the product of 8 (e.g, with H2/Pd/C or ammonium formate/Pd are examples) to yield (R)-quinuclidin-3-yl 6-[(3S,4R)-4-amino-3-methoxypiperidin-l-yl]hexanoate; [0193] 10) acylating the product of 9 with 4-amino-5-chloro-2-methoxybenzoic acid (e.g, with EDCI (l-ethyl-3-(3’-dimethylaminopropyl)carbodiimide); HOBt (1-hydroxbenzotriazole); HOSU (N-hydroxysuccinimide); HONB (N-hydroxy-5-norbene-endo-2,3-dicarboxamide); isobutyl chloroformate; pivaloyl chloride; DCC (dicyclohexylcarbodiimide)) to yield (R)-quinuclidin-3-yl 6-((3 S,4R)-4-(4-amino-5-chloro-2-methoxybenzamido)-3-methoxypiperidin-l-yl)hexanoate; [0194] 11) optionally converting the product of 10 to a salt.

J

[0195] A further aspect of the invention is process for preparing (R)-quinuclidin-3-yl 6-((3S,4R)-4-(4-amino-5-chloro-2-methoxybenzamido)-3-methoxypiperidin-l-yl)hexanoate or a salt thereof, comprising: [0196] 1) converting a compound that is ethyl 4-anuno-3-methoxypiperidme-l - -carboxylate

[0197] to a salt; [0198] 2) converting the ethyl 4-ammo-3-methoxypiperidine-l -carboxylate salt to ethyl 4-(diphenylamino)-3-methoxypiperidine-l-carboxylate 34 WO 2007/028073 PCT/US2006/034322

[0199] 3) treating tlie ethyl 4-(diphenyIamino)-3-methoxypiperidine-1-carboxylate with an alkali metal hydroxide or hydride to yield 3-methoxy-N,N-diphenylpiperidin-4-amine

Bn2N OCH3 . 9 [0200] 4) producing a chiral salt of 3-methoxy-N,N-diphenylpiperidin-4-amine by treating the 3-methoxy-N,N-diphenylpiperidin-4-amine with a chiral resolving agent and isolating the cis isomer of the salt of 3-methoxy-N,N-diphenylpiperidin-4-amine thereby produced; [0201] 5) optionally recrystallizing the product of 4; [0202] 6) basifying the product of 4 or 5 to yield the free base form of the product of 4 or 5

OCH3. 9 [0203] 7) alkylating the product of 6 with ethyl 6-bromohexanoate to yield ethyl 6-((3S,4R)-4-(diphenylammo)-3-methoxypiperidin-l-yl)hexanoate

[0204] 8) esterifying the ethyl 6-((3 S,4R)-4-(diphenylamino)-3 -methoxypiperidin-1-yl)hexanoate with (R)-quinuclidin-3-ol to yield (R)-quinuclidin-3-yl 6-((3 S,4R)-4-(diphenylamino)-3-methoxypiperidin-l-yl)hexanoate

Bn2N''

och3 0,.

IN

[0205] 9) deprotecting the 4-amino group of the product of 8 to yield (R)-quinuclidin-3-yl 6-[(3S#4R)-4-amhio-3-methoxypiperidin-l-yl]hexanoate; 35 WO 2007/028073 PCT/US2006/034322 [0206] 10) acylating the product of 9 with 4-amino-5-chloro-2-methoxybenzoic acid to yield (R)-quinuclidih-3-yl 6-((3 S,4R)-4-(4-amino-5-chloro-2-methoxybenzamido)-3-methoxypiperidin-1 -yl)hexanoate; [0207] 11) optionally converting the product of 10 to a salt.

[0208] Preferably in this aspect of the invention the salt of step 1 is HCI.

[0209] Preferably in this aspect of tire invention the alkali metal hydroxide of step 3 is KOH.

[0210] Preferably in this aspect of the invention the chiral salt of step 4 is (+)-2,3-dibenzoyl-D-tartaric acid, which, upon reaction with HI', yields a (3S,4R)-enantiomer (+)-2,3-dibenzoyl-D-tartrate salt.

[0211] Preferably in this aspect of the invention the reaction conditions of step 8 comprise Ti(OiP)4 (titanium (IV) isopropoxide).

[0212] Preferably in this aspect of the invention the reaction conditions of step 9 comprise H2/Pd/C.

[0213] Preferably in this aspect of the invention the reaction conditions of step 10 comprise pivaloyl chloride.

Definitions [0214] As used herein, the term “alkyl” includes those alkyl groups of a designed number of carbon atoms. Alkyl groups may be straight, or branched. Examples of “alkyl” include methyl, ethyl, propyl, isopropyl, butyl, iso-, sec- and tert-butyl, pentyl, hexyl, heptyl, 3-ethylbutyl, and the like. If the number of carbon atoms is not specified, the subject “alkyl” moiety has from 1 to 6 carbons.

[0215] The term “alkoxy” represents an alkyl group of indicated number of carbon atoms attached to the parent molecular moiety through an oxygen bridge. Examples of alkoxy groups include, for example, methoxy, ethoxy, propoxy and isopropoxy.

[0216] By “aryl” is meant an aromatic carbocyclic group having a single ring (e.g., phenyl) that is optionally fused or otherwise attached to other aromatic hydrocarbon rings or non-aromatic hydrocarbon rings. “Aryl” includes multiple condensed rings in which at least one is aromatic, (e.g., 1,2,3,4-tetrahydronaphthyl, naphthyl), wherein each ring is optionally mono-, di-, or trisubstituted with the groups identified below, as well as multiple rings that are not fused, such as, for example, biphenyl or binaphthyl. Preferred aryl groups of the present invention are phenyl, 1-naphthyl, 2-naphthyl, indanyl, indenyl, dihydronaphthyl, fluorenyl, tetralinyl or 6,7,8,9-tetrahydro-5H-benzo[a]cycloheptenyl. More preferred are 36 WO 2007/028073 PCT/US2006/034322 phenyl, biphenyl, and naphthyl. Most preferred is phenyl. The aryl groups herein are unsubstituted or, as specified, substituted in one or more substitutable positions with various groups. For example, such aryl groups may be optionally substituted with, for example, Ci-Cg alkyl, Cj-Cg allcoxy, halogen, hydroxy, cyano, nitro, amino, mono(Ci-Cg)allcylamino, di(Ci-Cg)all<ylamino, C2-C6alkenyl, C2-Cgalkynyl, Cj-Cg haloalkyl, Ci-Cg haloalkoxy, amino(Ci-Cg)alkyl, mono(Ci-Cg)alkylamino(Ci-Cg)alkyl or di(Ci-Cg)alkylamino(Ci-Cg)alkyl.

[0217] Hie term “haloalkoxy” refers to an alkoxy group substituted with at least one halogen atom and optionally further substituted with at least one additional halogen atom, where each halogen is independently F, Cl, Br or I. Preferred halogens are F or Cl. Preferred haloalkoxy groups contain 1-6 carbons, more preferably 1-4 carbons, and still more preferably 1-2 carbons. “Haloalkoxy” includes perhaloallcoxy groups, such as OCF3 or OCF2CF3.

[0218] The term "heteroaryl" refers to an iiromatic ring system containing at least one heteroatom selected from nitrogen, oxygen, and sulfur. The heteroaryl ring may be fused or otherwise attached to one or more heteroaryl rings, aromatic or non-aromatic hydrocarbon rings or heterocycloalkyl rings. Examples of heteroaryl groups include, for example, pyridyl, pyrimidinyl, quinolinyl, benzothienyl, indolyl, indolinyl, pyridazinyl, pyrazinyl, isoindolyl, isoquinolyl, quinazolinyl, quinoxalinyl, phthalazinyl, imidazolyl, isoxazolyl, pyrazolyl, oxazolyl, thiazolyl, indolizinyl, indazolyl, benzothiazolyl, benzimidazolyl, benzofuranyl, furanyl, thienyl, pyrrolyl, oxadiazolyl, thiadiazolyl, benzo[l,4]oxazinyl, triazolyl, tetrazolyl, isothiazolyl, naphthyridinyl, isochromanyl, chromanyl, tetrahydroisoquinolinyl, isoindolinyl, isobenzotetrahydrofuranyl, isobenzotetrahydrothienyl, isobenzothienyl, benzoxazolyl, pyridopyridinyl, benzotetrahydrofuranyl, benzotetrahydrothienyl, purinyl, benzodioxolyl, triazinyl, pteridinyl, benzothiazolyl, imidazopyridinyl, imidazothiazolyl, dihydrobenzisoxazinyl, benzisoxazinyl, benzoxazinyl, dihydrobenzisothiazinyl, benzopyranyl, benzothiopyranyl, chromonyl, chromanonyl, pyridinyl-N-oxide, tetrahydroquinolinyl, dihydroquinolinyl, dihydroquinolinonyl, dihydroisoquinolinonyl, dihydrocoumarinyl, dihydroisocoumarinyl, isoindolinonyl, benzodioxanyl, benzoxazolinonyl, pyrrolyl N-oxide„ pyrimidinyl N-oxide, pyridazinyl N-oxide, pyrazinyl N-oxide, quinolinyl N-oxide, indolyl N-oxide, indolinyl N-oxide, isoquinolyl N-oxide, quinazolinyl N-oxide, quinoxalinyl N-oxide, phthalazinyl N-oxide, imidazolyl N-oxide, isoxazolyl N-oxide, oxazolyl N-oxide, thiazolyl N-oxide, indolizinyl N-oxide, indazolyl N-oxide, benzothiazolyl N-oxide, benzimidazolyl N-oxide, pyrrolyl N-oxide, oxadiazolyl N-oxide, thiadiazolyl N-oxide, 37 WO 2007/028073 PCT/US2006/034322 triazolyl N-oxide, tetrazolyl N-oxide, benzothiopyranyl S-oxide, benzothiopyranyl S,S-dioxide. Preferred heteroaryl groups include pyridyl, pyrimidyl, quinolinyl, indolyl, pyrrolyl, furanyl, thienyl, and imidazolyl. More preferred heteroaryl groups include pyridyl, pyrrolyl, and indolyl. The heteroaryl groups herein are unsubstituted or, as specified, substituted in one or more substitutable positions with various groups. For example, such heteroaryl groups may be optionally substituted with, for example, Cj-Cg alkyl, Ci-Cg alkoxy, halogen, hydroxy, cyano, nitro, amino, mono(Ci-Cg)alkylamino, di(Ci-Cg)alkylamino, C2-Cgalkenyl, C2-Cgalkynyl, Cj-Cg haloalkyl, Cj-Cg haloalkoxy, amino(Ci-Cg)alkyl, mono(Cj-

Cg)alkyIamtno(Ci-Cg)alkyl or di(Ci-Cg)alkyIamino(Ci-Cg)alkyl.

[0219] The term "heterocycloalkyl" refers to a ring or ring system containing at least one heteroatom that is preferably, selected from nitrogen, oxygen, and sulfur, wherein said heteroatom is in a non-aromatic ring. The heterocycloalkyl ring is optionally fused to or otherwise attached to other heterocycloalkyl rings and/or non-aromatic hydrocarbon rings and/or phenyl rings. Preferred heterocycloalkyl groups have from 3 to 7 members. More preferred heterocycloalkyl groups have 5 or 6 members. Examples of heterocycloalkyl groups include, for example, aza-bicyclo[2.2.2]octyl, aza-bicyclo[3.2.1]octyl, moipholinyl, thiomoipholinyl, thiomorpholinyl S-oxide, thiomorpholinyl S,S-dioxide, piperazinyl, homopiperazinyl, pyrrolidinyl; pyrrolinyl, tetrahydropyranyl, piperidinyl, tetrahydrofuranyl, tetrahydrothienyl, homopiperidinyl, homomorpholinyl, homothiomoipholinyl, homothiomorpholinyl S,S-dioxide, oxazolidinonyl, dihydropyrazolyl, dihydropyrrolyl, dihydropyrazinyl, dihydropyridinyl, dihydropyrimidinyl, dihydrofuryi, dihydropyranyl, tetrahydrothienyl S-oxide, tetrahydrothienyl S,S-dioxide and homothiomorpholinyl S-oxide. Preferred heterocycloalkyl groups include aza-bicyclo[2.2.2]octyl, aza-bicyclo[3.2.1]octyl, piperidinyl, piperazinyl, pyrrolidinyl, thiomorpholinyl, S,S-dioxothiomoipholinyl, moipholinyl, and imidazolidinyl. More preferred are aza-bicyclo[2.2.2]octyl, aza-bicyclo[3.2.1]octyl, piperidinyl, piperazinyl, pyrrolidinyl, imidazolidinyl, and moipholinyl.

The heterocyde groups herein are unsubstituted or, as specified, substituted in one or more substitutable positions with various groups. For example, such heterocyde groups may be optionally substituted with, for example, Cj-Cg allcyl, Cj-Cg alkoxy, halogen, hydroxy, cyano, nitro, amino, mono(Cj-Cg)alkylapiino, di(Cj-Cg)alkylamino, C2-Cg alkenyl, C2-Cg alkynyl, Cj-Cg haloalkyl, Cj-Cg haloalkoxy, amino(Cj-Cg)alkyl, mono(Ci-Cg)alkylamino(Cj-Cg)alkyl, di(Cj-C6)alkylamino(Cj-Cg)alkyl or =0. 38 WO 2007/028073 PCT/US2006/034322 [0220] The term "pharmaceutically acceptable salts" or "a pharmaceutically acceptable salt thereof' refer to salts prepared from pharmaceutically acceptable non-toxic acids or bases including inorganic acids and bases and organic acids and bases. Since the compound of the present invention is basic, salts may be prepared from pharmaceutically acceptable non-toxic acids. Suitable pharmaceutically acceptable acid addition salts for the compound of the present invention include acetic, benzenesulfonic (besylate), benzoic, camphorsulfonic, citric, ethenesulfonic, fumaric, gluconic, glutamic, hydrobromic, hydrochloric, isethionic, lactic, maleic, malic, mandelic, methanesulfonic, mucic, nitric, pamoic, pantothenic, phosphoric, succinic, sulfuric, tartaric, p-toluenesulfonic, and the like. Preferred acid addition salts are the chloride and sulfate salts. In the most prefened aspect, structural and/or functional analogs of cisapride are administered as the free base or as the mono or dihydrochloride salt.

[0221] As used herein, the terms “treatment” and “treating” encompass prophylactic administration of the compound or a pharmaceutical composition comprising the compound (“prophylaxis”) as well as remedial therapy to reduce or eliminate a disease or disorder mentioned herein. Prophylactic administration is intended for prevention of disorders and may be used to treat a subject that is at risk of having or suffering from one or more disorders mentioned herein. Thus, as used herein, the term "treatment", or a derivative thereof, contemplates partial or complete inhibition of the stated disease state, when an active ingredient of the invention is administered prophylactically or following the onset of the disease state for which such active ingredient of the is administered. "Prophylaxis" refers to administration of the active ingredient(s) to a mammal to protect the mammal from any of the disorders set forth herein, as well as others.

[0222] The term "therapeutically effective amount" refers to an amount necessary to achieve a derived therapeutic effect such as: 1) an amount sufficient to alleviate reflux disease, 2) an amount sufficient to alleviate nausea and vomiting, or 3) an amount sufficient to alleviate a condition caused by gastrointestinal motility dysfunction. Therapeutically effective amounts of structural and/or functional analogs of cisapride are encompassed by the above-described dosage amounts and dose frequency schedule.

[0223] A "mammal" may be, for example, a mouse, rat, pig, horse, rabbit, goat, cow, cat, dog, or human. In a preferred aspect, the mammal is a human.

[0224] The term “individuals)” is defined as a single mammal to which is administered a compound of the present invention. The mammal may be, for example, a mouse, rat, pig, horse, rabbit, goat, cow, cat, dog, or human. In a preferred aspect, the individual is a human. 39 WO 2007/028073 PCT/US2006/034322 [0225] The term "esterified cisapride" means therapeutic compounds of the subject invention that are structural and/or functional analogs of cisapride, which contain a hydrolysable group, generally an ester, that does not detract from the ability of these compounds to provide a therapeutic benefit, but which makes these compounds more susceptible to degradation by hydrolases, particularly serum and/or cytosolic esterases, and which reduces the interaction of the cytochrome P-450 drug detoxification system with the cisapride compounds. Esterase-mediated metabolism of esterified cisapride compounds reduces the role of the cytochrome P-450 drug detoxification system in cisapride metabolism . and reduces or eliminates adverse effects caused by cisapride.

[0226] The term “structural analog” as used herein means that a described compound . shares structural characteristics with a parent compound. For example, a structural analog of cisapride may share one or more structural characteristics with the parent cisapride compound, such as a substituted aryl ring connected to a piperdine ring through an amide linker, but differ structurally in other ways, such as the inclusion or deletion of one or more other chemical moieties.

[0227] The term “functional analog” as used herein means that a described compound shares a functional characteristic with a parent compound. For example, a functional analog of cisapride may share few, if any, structural characteristics with cisapride, but affect a similar function, for example, 5-HT4 agonism.

[0228] The term "adverse effects" includes, but is not limited to, gastrointestinal disorders such as diarrhea, abdominal cramping, and abdominal grumbling; tiredness; headache; increased systolic pressure; death; ventricular tachycardia; ventricular fibrillation; torsades de pointes; QT prolongation; increased heart rate; neurological and CNS disorders; and interaction of cisapride with other drugs given concurrently such as but not limited to digoxin, diazepam, ethanol, acenocoumarol, cimetidine, ranitidine, paracetamol, and propranolol.

[0229] The term "gastroesophageal reflux disease" as used herein means the incidence of, and the symptoms of,those conditions causing the backward flow of the stomach contents into the esophagus.

[0230] The terms "eliciting an anti-emetic effect" and "anti-emetic therapy" as used herein mean providing relief from or preventing the symptoms of nausea and vomiting induced spontaneously or associated with emetogenic cancer chemotherapy or irradiation therapy. 40 WO 2007/028073 PCT/US2006/034322 [0231] . The term "treating a condition caused by gastrointestinal motility dysfunction" as used herein means treating tlie symptoms and conditions associated with this disorder which include, but are not limited to, gastroesophageal reflux disease, dyspepsia, gastroparesis, constipation, post-operative ileus, and intestinal pseudo-obstruction.

[0232] The term "prokinetic" as used herein means the enhancement of peristalsis in, and thus the movement through the gastrointestinal tract.

[0233] The term "dyspepsia" as used herein means a condition characterized by an impairment of the power or function of digestion that can arise as a symptom of a primary gastrointestinal dysfunction or as a complication due to other disorders such as appendicitis, gallbladder disturbances, or malnutrition.

[0234] The term "gastroparesis" as used herein means a paralysis of the stomach brought about by a motor abnormality in the stomach or as a complication of diseases such as diabetes, progressive systemic sclerosis, anorexia nervosa, or myotonic dystrophy.

[0235] The term "constipation" as used herein means a condition characterized by infrequent or difficult evacuation of feces resulting from conditions such as lack of intestinal muscle tone or intestinal spasticity.

[0236] The term "post-operative ileus" as used herein means an obstruction in the intestine due to a disruption in muscle tone following surgeiy.

[0237] The term "intestinal pseudo-obstruction" as used herein means a condition characterized by constipation, colicky pain, and vomiting, but without evidence of physical obstruction.

Preparation of Compounds [0238] While the chemical synthesis of various analogs of cisapride can be performed by the methods described in European Patent Application No. 0,076,530 A2 published Apr. 13, 1983, WO 01/093849, U.S. Pat. Nos. 4,962,115 and 5,057,525 and in Van Daele et al., Drug Development Res. 8:225-232 (19,86), the disclosures of which are incoiporated herein by reference in their entireties, compounds of the invention are preferably made according to the -disclosure of Methods 3-6.

[0239] The invention is illustrated further by some examples, which follow the methods.

The methods and examples are not to be construed as limiting the invention in scope or spirit to the specific procedures described in them. Those having skill in the art will recognize that the starting materials may be varied and additional steps employed to produce compounds encompassed by the invention, as demonstrated by the following examples. Those skilled in 41 WO 2007/028073 PCT/US2006/034322 the art will also recognize that it may be necessary to utilize different solvents or reagents to achieve some of the above transformations. In some cases, protection of reactive functionalities may be necessary to achieve the above transformations. In general, such need for protecting groups, as well as the conditions necessary to attach and remove such groups, will be apparent to those skilled in the art of organic synthesis. When a protecting group is employed, deprotection step may be required. Suitable protecting groups and methodology for protection and deprotection such as those described in Protecting Groups in Organic Synthesis by T. Greene are well known and appreciated in the art.

[0240] Unless otherwise specified, all reagents and solvents are of standard commercial grade and are used without further purification. The appropriate atmosphere to run the reaction under, for example, air, nitrogen, hydrogen, argon and the like, will be apparent to those skilled in the art.

[0241] Method 1 Preparation of (R)-quinucli din-3-yl 6-((3 S,4R)-4-(4-amino-2-chloro-6-methoxvbenzamido)-3 -methoxypiperidin-1 -vDhexanoate [0242] Step 1: Synthesis of ethyl 4-(dibenzylamino)-37methoxypiperidine-1-carboxylate (1):

racemic' 1 [0243] To a solution of racemic ethyl 4-amino-3 -methoxypiperidine-1 -carboxylate (1 part by mole) in DMF were added benzyl bromide.(about 2.2 part by mole), potassium carbonate . (about 2.4 part by mole) and potassium iodide (about 0.2 part by mole) respectively. The .. reaction was heated to about 80 'C (in the specification, delta, or “Δ,” refers to heat). After about 6 hours, the reaction was slowly diluted with water (about 12 parts by volume) and extracted with, for example, ethyl acetate. The organic layer was washed with brine and then dried over anhyh. Na2SO4. Subsequent filtration and concentration ofthe solvent provided the 1 as the yellow-orange oil (1 part by mole).

[0244] Step 2. Synthesis of jy/V-dibenzyl-3-methoxypiperidin-4-amine (2): 42 WO 2007/028073 PCT/US2006/034322

[0245] To a solution of 1 was added NaOH (about 10 part by mole) in isopropanol and the mixture was stirred and heated to reflux. After about 3 to about 5 hours, the reaction was cooled to room temperature and the alcoholic solvent was removed via rotary evaporation. The mixture was diluted with water and extracted with ethyl acetate. The organic layer was brined washed before drying over anhyh. Na2SO4. Subsequent filtration and concentration of the solvent provided a crude oil. which was purified over SiO2 (C^Ck'.MeOHtNHzOH; (about) 15:1:0.01) to furnish 2.

[0246] Step 3. Synthesis of (3S,4R)-/V,Ar-dibenzyl'-3-methoxypiperidin-4-amine (3):

1. (+)-DBT, EtOH/H2O 2.aq. NaOH

Bn2N''' 0CH3 3 [0247] (+)-2,3-Dibenzoyl-D-tartaric acid (about 1.2 part by weight) is dissolved in ethanol before slowly adding to a solution of 2 (about I part by weight). The solution is gently warmed and then allowed to cool to room temperature to crystallize the salt product. The salt is filtered and washed with EtOH/H2O before suspending in water and basifying by adding aq. NaOH (7%, wt/wt) until the pH reaches about 12. The suspension is stirred vigorously at rt and the solid is filtered away, washed with water and vacuum dried to furnish the cis-isomer 3.

[0248] Step 4. Synthesis of ethyl 6-((3S,4R)-4-(dibenzylamino)-3-methoxypiperidin-l-yl)hexanoate (4):

0CH3 3

Ethyl bromohexanoate K2CO3, KI, DMF, Δ ,0

Bn2N 0CH3 4 fE‘ [0249] To a solution of 3 (1 part by mole) in DMF are added ethyl bromohexanoate (about 1.2 part by mole), potassium carbonate (about 1.4 part by mole) and potassium iodide (about 0.2 part by mole) respectively. The reaction is then heated to 80 °C. After about 8 h, the reaction is slowly diluted with water (about 12 part by volume) and extracted with ethyl 43 WO 2007/028073 PCT/US2006/034322 acetate. The organic layer is washed with brine and then dried over anhyd. Na2SC>4. Subsequent filtration and concentration of tlie solvent furnishes the crude material. Purification over SiC>2 and gives the alkylated material 4.

[0250] Step 5. Synthesis of (R)-quinuclidin-3-yl 6-((3 S,4R)-4-(dibenzylamino)-3-methoxypiperidin-l-yl)hexanoate (5): OEt Ti(OEt)4, (R)-Quinuclidinol Βη2Ν"'>Τ ° toluen®'Δ ° OCK3 OCH3 4 5 [0251] Titanium tetraethoxide is added to a mixture of 4 (1 part by mole) and (#)-(-)-3-quinuclidinol (1 part by mole) m toluene; The reaction mixture is equipped with a dean-stark apparatus before heating to about 90 °C and partial vacuum is then applied (additional toluene is added as needed to main the requisite solvent level). The mixture is then cooled to rt and the reaction is diluted with ethyl acetate and then water is added to the resulting mixture. The organic layer is separated, brine washed, dried over anhyd. Na2SO4, filtered and concentrated. Purification over SiO2 gives the enantiomerically enriched 5.

[0252] Step 6. Synthesis of (R)-quinuclidin-3-yl 6-((3S,4R)-4-amino-3- methoxypiperidin-l-yl)hexanoate (6):

Bn2N''

OCH3 5 O>,

H2, Pd/C, EtOH H,N"'

och3 6 [0253] A solution of 5 (1 part by mole) in EtOH is added to a reaction flask containing palladium on carbon (about 0.2 part by mole). The mixture is then evacuated of air before subjecting to hydrogenolysis condition by using atmospheric H2. Upon completion of the reaction, the palladium is filtered off under a pad of celite followed by EtOH washes. The filtrated is concentrated via rotary, evaporation to furnish 6.

[0254] Step 7. Synthesis of (R)-quinuclidin-3-yl 6-((3S,4R)-4-(4-amino-2-chloro-6-methoxybenzamido)-3 -methoxypiperidin-1 -yl)hexanoate (7): 44 WO 2007/028073 PCT/US2006/034322

[0255] To a solution of, for example, ethyl chloroformate (1 part by mole) in THF at about 0 °C is added the benzoic acid (1 part by mole) in portions. The mixture is warmed to rt for about 1 h before cooling to about 0 °C and adding dropwise a solution of 6 (1 part by mole). The reaction is then warmed to rt. Upon completion of the reaction, reaction is quenched by addition of a sat’d solution of NaHCOs and extracting over EA. The organic layer is brine washed, dried over arihyd. Na2SO4, filtered and concentrated to furnish the desired product 7.

[0256] Method 2 [0257] Synthesis of (7?)-quinuclidin-3-yl 6-((35,47?)-4-(4-amino-5-chloro-2- methoxybenzamido)-3-methoxypiperidin-1 -yl)hexanoate (or 6-[4R-(4-amino-5-chloro-2-methoxy-benzoylamino)-3 S-methoxy-piperidin-1 -yl]-hexanoic acid 1 -aza-bicyclo [2.2.2]oct-3'R-yl ester; ATI-7505):

[0258] Under acidic conditions, l-benzylpiperidin-4-one (1) and hydrobromic acid are reacted in the presence of acetic acid to generate V-benzyl-3-bromopiperidin-4-one (2). Treatment of 2 with a sodium methoxide and methanol solution provides l-benzyl-4,4-dimethoxypiperidin-3-ol (3). [The presence of the beta-amino group negates the possibility of a Favorskii-type reaction.] Methylation of the hydroxyl group is done using a hydride base followed by treatment with iodomethane in the presence of DMF as tlie solvent to furnish compound 4. 45 WO 2007/028073 PCT/US2006/034322

''"Ύ NBn 4 5 OMe

(+)-DBT

NBn BOCjO, THF xNBn Pd/C, MeOH,H2

NH

EtOH/H2O h,N’"S^

BocHN 6-Bromohexanenitrile

TFA H2N' OMe 7

K2CO3, DMF, D BocHN OMe

BocHN" OMe

10 11

OMe 12

[0259] Subsequent acetal hydrolysis using 1% sulfuric acid in the presence of heat yields a piperidine 5, which can then undergo a reductive amination using, for example, sodium cyanoborohydride and ammonium acetate in methanol to yield 1-benzyl-3-methoxypiperidin- 4-amine (6). At this stage, 6 can undergo a chiral resolution technique. This can be accomplished, for example, using (+)-DBT or other variant of tartaric acid in the presence of the suitable solvent to afford exclusively asymmetrically pure compound 7. Boc group protection of the primary amine in 7 can be accomplished using Boc anhydride in the 46 WO 2007/028073 PCT/US2006/034322 presence of THF solvent to obtain 8. A debenzylation reaction by hydrogenolysis using Pd/C in methanol in the presence of atmospheric hydrogen gas set the stage for the alkylation step. Treatment of 6-bromohexanenitrile in the presence of mild base and DMF generates compound 10. A nitrile to ester conversion using (R)-quinuclidinol in the presence of dilute acid generates 11. Subsequent removal of the Boc group using TFA furnishes the free amine, which can undergo a coupling reaction with requisite benzoic acid in the presence of a coupling reagent such as ethyl chloroformate (and more preferably isobutyl chloroformate) to afford ATI-7505 as an enantiomerically pure material. 1. Ethyl 6-Bromohexanoate K2CO3, DMF, Δ 9 --

2. TFA

13: ATI-7505 [0260] Alternatively, compound 9 can be alkylated using ethyl 6-bromohexanoate in the presence of mild base. Subsequent removal of the Boc group yields compound 14. Titanium mediated transesterification of 14; using (R)-quinuclidinol and titanium tetraethoxide in toluene solvent generates ATI-7505. Carlsburg esterase hydrolyzes esters that are of the S-configuration, therefore leaving intact esters that are of the R configuration. Therefore treatment of diasteriomeric mixtures of 15 with the Carlsburg esterase may also yield ATI-7505.

[0261] Method 3 [0262] Alternate synthesis of (7?)-quinuclidin-3-yl 6-((35,47?)-4-(4-amino-5-chloro-2-methoxybenzamido)-3 -methoxypiperidin- l-yl)hexanoate dihydrochloride salt - ATI-7505 dihydrochloride salt:

47 WO 2007/028073 PCT/US2006/034322 [0263] With vigorous stirring hydrogen chloride in diethyl ether (about 1.4 parts by mole) was slowly added to a solution of piperidine carbamate (about 1.0 part by mole). The mixture was allowed to stir for about 8 hours before filtering and washing with diethyl ether. The white solid was further washed witii dichloromethane and diethyl ether (about 1.1 ratio by volume) to remove impurities and was subsequently dried under vacuum to obtain the racemic piperidine carbamate hydrochloride salt as a white solid.

[0264] Benzyl bromide (about 2.2 parts by mole) was added to a mixture of the piperidine hydrochloride (about 1.0 parts by mole), potassium carbonate (K2CO3, about 2.4 parts by mole), and potassium iodide (KI, about 0.1 parts by mole) in dimethylformamide at room temperature (rt). The reaction mixture was heated to about 75 °C. After about 18 hours, the reaction was cooled to rt, diluted with water and extracted with ethyl acetate (EA). The organic layer was washed with brine and then dried over anhyd. (anhydrous) sodium sulfate (Na2SC>4). Subsequent filtration under vacuum and concentration provided the crude oil product. The product was precipitated out by adding a mixture of isopropanol and water (about 1:1 volume ratio) and with stirring. Following vacuum filtration provided a dibenzylamino piperidine as a white solid.

Bn2N

ΥΎη OCH3 [0265] Potassium hydroxide (about 10 parts by mole) was added in portions to a stirred solution of dibenzylamino carbamate (about 1.0 parts by mole) in isopropanol at room temperature and the mixture was stirred and heated to reflux. After about 5 hours the reaction was cooled to room temperature and the solvent was removed under vacuum to approximately half volume. The reaction mixture was diluted with water and extracted with ethyl acetate. Following brine wash, the product was dried over anhydrous Na2SC>4. Subsequent vacuum filtration provided a piperidine as a semisolid.

Bn OCH, (+)-DBT, MeOH/HgO, Δ " BnPN'" OCH3 48 WO 2007/028073 PCT/US2006/034322 [0266] Chiral resolution of 3,4-disubstitutedpiperidine: [0267] (+)-2,3-Dibenzoyl-D-tartaric acid. [(+)-DBT; about 1.0 parts by mole] was dissolved in methanol and was added slowly to a heated solution (about 70 °C) of disubstituted piperidine (about 1.0 parts by mole) in methanol and water (about 1:1 ratio by volume). The mixture was stirred at this temperature for about 1 hour before removing the heat and allowing it to stir at room temperature for several hours, e.g., about 16 hours in one case. The product salt was collected hy vacuum filtration and rinsed with methanol and water (about 1:1 ratio by volume). The wet-calce was collected and recrystallized two more times using the same procedure as above.

[0268] The wetcake was suspended in water and IN sodium hydroxide was added to it (to a pH of about 12). The resulting suspension was stirred for about 3 hours at room temperature before extracting with ethyl acetate. The organic layer was washed with brine, filtered and concentrated to provide the enantiomerically enriched 3,4-disubstituted piperidine product as a white solid. -

[0269] To a mixture of the piperidine (about 1.0 parts by mole), K2CO3 (about 1.2 parts by mole) and KI (about 0.1 parts by mole) in DMF solvent was slowly added ethyl 6-bromohexanoate (about 1.1 parts by mole). The reaction was stirred-heat at about 70 °C for about 10 hours before cooling to room temperature and diluting with water and extracting with ethyl acetate. The organic layer was separated and then washed with brined and finally dried over anhydrous Na2SO4- Subsequent filtration and concentration provided the crude oil. The crude product was purified via flash column chromatography (e.g., 1:1 ratio of

[0270] To a mixture of the above piperidine ester (about 1.0 parts by mole) and (37?)-quinuclidinol (about 4.0 parts by mole) was added titanium(TV) tetraethoxide (about 1.0 parts by mole) at room temperature. The reaction was heated to about 85 °C and was run under partial pressure to remove any evolving ethanol. After about 18 hours, the reaction was cooled to rt before diluting with ethyl acetate and. quenching with water. The organic layers 49 WO 2007/028073 PCT/US2006/034322 were then washed with brine and dried over anhydrous Na2SO4. Following concentration, the crude oil was purified via flash column chromatography (e.g., about 100:10:1; CH2Cl2:MeOH:NH4OH) to provide tlie product as a clear oil.

0CH3 och3 [0271] To a reaction flask containing palladium on carbon was added a solution of the above dibenzyl piperidine ester (about 1.0 parts by mole) in methanol, and to this mixture was added ammonium formate (about 4 parts by mole). The reaction was heated to reflux and after about 10 hours, the reaction flask was cooled to room temperature and the palladium on carbon was filtered away, e.g., through a pad of celite. The filtrate was concentrated to an oil, which was purified via flash column chromatography (e.g., SiO2: about 150:10:1; CH2C12: CH3OH: NH4OH) to provide the amino piperidine ester product as a yellow oil.

[0272] To a stirred solution 4-amino-5-chloro-2-methoxybenzoic acid (about 1.2 parts by mole) and triethylamine (about 2.2 parts by mole) in tetrahydrofuran (THF) was slowly added isobutyl chloroformate (about 1.2 parts by mole) at room temperature. After about 30 minutes, a solution of the piperidine ester (about 1.0 parts by mole) in THF was added to the preformed, mixed anhydride. The reaction was stirred at room temperature for about 14 hours before diluting with a saturated solution of sodium bicarbonate. The product was extracted out using, e.g., ethyl acetate and’ the separated organic layer was further washed with brine and then dried over anhydrous sodium sulfate. Filtration and concentration provided ATI-7505 free base.

[0273] ATI-7505 free-base was dissolved in ethanol and isopropanol (about 1:1 ratio by volume) and cooled in an ice bath. To the ice cold solution was slowly added concentrated hydrochloric acid and then warmed to room temperature. After about 7 hours of stirring at room temperature, the solid was filtered and washed with ethanol and isopropanol (about 1:1 ratio by volume) to provide a wet cake. The wet cake was resuspended in ethanol and then 50 WO 2007/028073 PCT/US2006/034322 heated to reflux. The stirred solution was wanned to room temperature and allowed to recrystallize. The product was filtered under vacuum rinsed with ethanol and then dried under vacuum to provide ATI-7505 dihydrochloride salt was a white solid.

[0274] Method 4: [0275] Alternate synthesis of (R)-quinuclidin-3-yl 6-((35,47?)-4-(4-amino-5-chloro-2-methoxybenzamido)-3-methoxypiperidin-l-yl)hexanoate dihydrochloride salt - ATI-7505 dihydrochloride salt:

[0276] To a mixture of (3R)-quinuclidinol in dichioromethane was added drop-wise 6-bromohexanoyl chloride. The reaction mixture was heated to reflux and after about 18 hours the reaction was cooled to room temperature. The unreacted (3R)-quinucEdinol was filtered away and to the filtrate was added diethyl ether to precipitate out the desired product. The product was filtered under vacuum and washed with CH2CI2 and diethyl ether (about 1:1 ratio

[0277] Dibenzylamino piperidine (about 1.0 parts by mole) was added to a mixture of 6-bromoalkanoyl ester (about 1.0 parts by mole) and potassium carbonate (about 2.2 parts by mole) in DMF solvent. The reaction mixture was stirred at about 70 °C for approximately 11 hours before cooling to room temperature and then diluted with a saturated solution of sodium bircarbonate. The product was extracted out with ethyl acetate. Subsequent washing with brine, drying over anhydrous sodium sulfate, filtering and concentrating provided the product as colorless oil.

[0278] To a reaction flask containing palladi um on carbon was added a solution of the above dibenzyl piperidine ester (about 1.0 parts by mole) in methanol, and to this mixture was added ammonium formate (about 4 parts by mole). The reaction was heated to reflux and 51· WO 2007/028073 PCT/US2006/034322 after about 10 hours, the reaction flask was cooled to room temperature and tlie palladium on carbon was filtered away, e.g., through a pad of celite. The filtrate was concentrated to an oil, which was purified via flash column chromatography (e.g., SiC>2: about 150:10:1; CH2CI2: CH3OH: NH4OH) to provide the amino piperidine ester product as a yellow oil.

och3 [0279] To a stirred solution 4-amino-5-chloro-2-methoxybenzoic acid (about 1.2 parts by mole) and triethylamine (about 2.2 parts by mole) in tetrahydrofuran (THF) was slowly added isobutyl chloroformate (about 1.2 parts by mole) at room temperature. After about 30 minutes, a solution of the piperidine ester (about 1.0 parts by mole) in THF was added to the preformed, mixed anhydride. The reaction was stirred at room temperature for about 14 hours before diluting with a saturated solution of sodium bicarbonate. The product was extracted out using, e.g., ethyl acetate and tlie separated organic layer was further washed with brine and then dried over anhydrous sodium sulfate. Filtration and concentration provided ATI-7505 free base.

[0280] ATI-7505 free-base was dissolved in ethanol and isopropanol (about 1:1 ratio by volume) and cooled in an ice bath. To the ice cold solution was slowly added concentrated hydrochloric acid and then warmed to room temperature. After about 7 hours of stirring at room temperature, the solid was filtered and washed with ethanol and isopropanol (about 1:1 ratio by volume) to provide a wet cake. The wet cake was resuspended in ethanol and then heated to reflux. The stirred solution was warmed to room temperature and allowed to reciystallize. The product was filtered under vacuum rinsed with ethanol and then dried under vacuum to provide ATI-7505 dihydrochloride salt was a white solid.

[0281] Method 5: [0282] Alternate synthesis of (#)-quinuclidin-3-yl 6-((35,4#)-4-(4-amino-5-chloro-2-methoxybenzamido)-3-methoxypiperidin-l-yl)hexanoate dihydrochloride salt - ATI-7505 dihydrochloride salt: 52 WO 2007/028073 PCT/US2006/034322

[0283] Benzyl bromide (about 1.2 parts by mole) was added to a solution of (3R)-quinuclidinol (about 1.0 parts by mole) in dichloromethane. The reaction was stirred at room temperature for about 4 hours before filtering and rinsing with dichloromethane to provide the product as a white solid.

[0284] 6-Bromohexanoyl chloride (about 1.1 parts by mole) was added to a solution of benzyl protected (3R)-quinuclidinol (about 1.0 parts by mole) and the reaction mixture was heat to about 60°C. After about 12 hours, the reaction was cooled to room temperature and the product was precipitated out by the addition of diethyl ether. Following vacuum filtration and rinsing with ether and drying provided the product as an amorphous solid.

[0285] A mixture of the piperidine (about 1.0 parts by mole), the alkanoylhalide ester (about 1.0 parts by mole) and triethylamine (about 2.0 parts by mole) in DMF solvent was heated at about 60 °C for about 6 hours. The reaction was then cooled to room temperature and diluted with a saturated solution of sodium bicarbonate and extracted over ethyl acetate, Following brine wash and drying over anhydrous sodium sulfate the organic layer was concentrated to provide the product as clear oil.

[0286] To a reaction flask containing palladium on carbon was added a solution of the dibenzyl piperidine ester (about 1.0 parts by mole) in methanol and to this mixture was added ammonium formate (about 4 parts by mole). The reaction was heated to reflux and after about 53 WO 2007/028073 PCT/US2006/034322 10 hours. The reaction flask was then cooled to room temperature and the palladium on carbon was filtered, e.g., through a pad of celite. The filtrate was concentrated to give an oil and was subsequently purified via flash column chromatography (S1O2: about 150:10:1; CH2CI2: CH3OH: NH4OH) to provide the amino piperidine ester product as a yellow oil.

[0287] To a stirred solution 4-amino-5-chloro-2-methoxybenzoic acid (about 1.2 parts by mole) and triethylamine (about 2.2 parts by mole) in tetrahydrofuran (THF) was slowly added isobutyl chloroformate (about 1.2 parts by mole) at room temperature. After about 30 minutes, a solution of the piperidine ester (about 1.0 parts by mole) in THF was added to the preformed, mixed anhydride. The reaction was stirred at room temperature for about 14 hours before diluting with a saturated solution of sodium bicarbonate. The product was extracted out using, e.g., ethyl acetate and the separated organic layer was further washed with brine and then dried over anhydrous' sodium sulfate. Filtration and concentration provided ATI-7505 free base.

[0288] ATI-7505 free-base was dissolved in ethanol and isopropanol (about 1:1 ratio by volume) and cooled in an ice bath. To the ice cold solution was slowly added concentrated hydrochloric acid and then warmed to room temperature. After about 7 hours of stirring at room temperature, the solid was filtered and washed with ethanol and isopropanol (about 1:1 ratio by volume) to provide a wet cake. The wet cake was resuspended in ethanol and then heated to reflux. The stirred solution was warmed to room temperature and allowed to recrystallize. The product was filtered under vacuum rinsed with ethanol and then dried under vacuum to provide ATI-7505 dihydrochloride salt was a white solid.

[0289] Method 6 [0290] Alternate synthesis of (2?)-quinuclidin-3-yl 6-((35,4R)-4-(4-amino-5-chloro-2- methoxybenzamido)-3-methoxypiperidin-l-yl)hexanoate dihydrochloride salt - ATI-7505 dihydrochloride salt. While specific reaction conditions are recited below for an exemplary synthesis under Method 6, these specifics are not to be construed as limiting the scope ofthe 54 WO 2007/028073 PCT/US2006/034322 method. One of skill in the art will recognize that alterations in reaction conditions, including but not limited to reaction times, temperatures and solvents used, may be made under the method. Reaction yields, where indicated, are also exemplary and therefore may vary for each run and set of reaction conditions.

o · HCI

f^N'^'OEt ' BnBr, K2CO3, KI OCH3 c/s-piperidine carbamate NMP, Δ 82%

Δ Βη2Ν·γ 100% och3 C3

(+)~DBT ^νη·1«ΜΟΒΤ a) eq. NaOH b) Ethyl 6-Bromohexanoate

Bn,N" CH3OH, H2O, Δ 62%

Bn2N OCH3 c/s-AMP tartrate salt K2CO3, KI, DMF, 65 °C 100% HO-,,

OEt o„. och3 C5 TI(OEt)4, Toluene, reflux _ .

dryM 100% och3 C6

1. CI^^COzH .....Cr'-V® η·..— i„„i Tuc och3 C7

Pivaloyl, THF 2. HCI 84%

Ο < 'N 0CH .

HzN-^^OCH, °CH3

Pd/C, /PrOH Δ 85%

2HCI ATI-7505 [0291] The synthesis of ATI-7505 fiom cis-APM tartrate was based on 9.7 g lab run procedure.

O

JI N OEt

• HCI

H2N OCH3 c/s-piperidine carbamate

<~"NH OCH3 C3 [0292] a. Synthesis C2

c/s-AMP tartrate salt 55 WO 2007/028073 PCT/US2006/034322 [0293] Raw materials [0294] cis-piperidine carbamate, 24 Kg [0295] benzyl bromide, 37.8 Kg - [0296] KI, 1.67 Kg [0297] K2CO3,48.7 Kg [0298] N-methylpyrrolidone (NMP), 200 Kg [0299] EA (ethyl acetate), 360 Kg [0300] water, 600 kg [0301] isopropyl alcohol (IPA)/water (1:1 w/w), 250 Kg [0302] Procedure [0303] Charge cis-piperidine carbamate (24 Kg, 1 eq.) and K2CO3 (48.7 Kg, 6 eq.) to a reactor, followed by adding NMP (200 Kg) to the reactor. Stir the mixture at room temperature for 15 minutes. Add KI (1.67 Kg, 0.1 eq.) to the reactor, followed by adding benzyl bromide (37.8 Kg, 2.2 eq) and increasing the temperature to 75° C within 60 minutes. Sample the reaction, mixture after about 4 hours; the expected reaction time is about 7-9 hours.

[0304] After the reaction is deemed completed, add water (350 Kg) to the reactor and extract with EA (120 Kg; 3 times). Collect the EA layer and wash the EA layer with water (200 Kg; 3 times). Concentrate the EA layer to a solid at 70° C. Add IPA/water (1:1,200 Kg) to the reactor and heat the reactor to about 75-80° C. Add 25 Kg portions of IPA/water (1:1) at 75-80° C until a clear solution obtained. Slowly cool down the reaction mixture to 5° C. Collect the solid by filtration and dry the wet cake at about 60° C to obtain C2 (31.7 Kg; 82% yield). HPLC purity for the exemplary batch was 99.3 % [0305] b. Synthesis of C3 [0306] Raw material [0307] KOH, 56.3 Kg [0308] IPA, 200 Kg [0309] DCM (dichloromethane), 550 Kg [0310] Water, 1300 Kg [0311] C2,32 Kg [0312] Procedure [0313] Add C2 (32 Kg, 1 eq), KOH (56.3 Kg, 12 eq) and IPA (200 Kg) to the reactor.

Heat the reaction mixture to reflux temperature (about 82° C). Sample the reaction after about 56 WO 2007/028073 PCT/US2006/034322 4 hours; the expected reaction time is about 4-5 hours. After the reaction is completed, remove the IPA by distillation at 50° C. Add DCM (230 Kg) and water (700 Kg) to the reactor and collect both layers. Back extract the water layer with DCM (160 K; 2 times) and combine the DCM layers. Wash tlie DCM layer with water (200 Kg; 3 times) and concentrate the DCM layer at 70° C to obtain C3 as an oil and proceed to the next step without isolation (assume a 100% yield).

[0314] c. Synthesis of Cis-AMP tartrate salt [0315] Raw materials [0316] Add methanol (260 Kg) and water (130 Kg) to the reactor that contains C3 from the previous step. Add (+)-DBT (15.2 Kg), which has been dissolved in 130 Kg of methanol to the reactor at 70° C, preferably within 60 minutes. Add a portion of methanol (70 Kg) to make ensure a clear solution is obtained before cooling down the reaction mixture to 50° C. The product will come out around 50° C; slowly cool down to about 10° C before filtration. Collect solid by filtration and, preferably, check the enantiomeric excess (ee) value and solid content.

[0317] Place the solid in a reactor. Add MeOH/water (5:1, 600 Kg) to the reactor and heat the mixture to 70° C. More MeOH/water (5:1) can be added to obtain a clear solution before cooling down the reaction mixture to 50° C. Slowly cool down the mixture to 10° C before collecting the solid by filtration. Dry the wet cake at about 60° C. In this exemplary run, cis-AMP % (+)-DBT (12.6 Kg, 31% weight yield and 62% theoretical yield) was obtained with a HPLC purity 99.8% and an 97.9% ee.

[0318] d. Synthesis of the cis-AMP free base

Bn2N'''

^NH OCH3

1/2 (+)-DBT

aq. NaOH

0CH3 c/s-AMP tartrate salt Freebase [0319] Raw material [0320] cis AMP 1/2 DBT, 1 Og, 0.0279 mole [0321] isopropyl ether (IPE), 50 ml [0322] water, 50 ml [0323] 45% NaOH, 7.2g, 0.18 mole 57 WO 2007/028073 PCT/US2006/034322 [0324] Procedure [0325] The piperidine (+)-dibenzoyltartrate salt (10.00 g; 0.0279 mole) was suspended in 30 ml water and 50 ml EPE with aggressive stirring. 45% sodium hydroxide (7.2g; 0.18 mole) was added dropwise until the solid was dissolved. The IPE layers were washed with water (10 ml; 2 times), and concentration provided a white solid compound of crude free base (7.20 g).

[0326] e. Synthesis of C5

Bn2N'" γ^ 0CH3

Free base [0327] Raw material

[0328] free base, 7.2 g, 0.0232 mole ‘.[0329] ethyl 6-bromo-hexanoate, 4.76 g, 0.0214 mole [0330] potassium carbonate, 5.77 g, 0.0418 mole [0331] potassium iodide, 1.39 g, 8.37 mmole [0332] DMF (dimethyl formamide), 30 ml [0333] isopropyl ether (IPE), 50 ml [0334] water, 50 ml.

[0335] Procedure [0336] Free base (7.2 g), ethyl 6-bromo-hexanoate (4.75 g; 0.0214 mole), potassium carbonate (5.77 g; 0.0418 mole), potassium iodide (1.39 g; 8.37 mmole), and DMF (30 ml) were charged to a reactor. The reaction mixture was heated to 70° C for 1 hour and was monitored by HPLC for the completion of the reaction. After 1 hour, the reaction was cooled to room temperature and quenched with 30 ml water and 50 ml IPE. The IPE layers were washed with water (10 ml; 2 times). Concentration provided a yellow oil of crude compound C5(9.10g).

[0337] f. Synthesis of C6

[0338] Raw material 58 WO 2007/028073 PCT/US2006/034322 [0339] C5,9.10 g, 0.0201 mole [0340] (R)-3-quinuclidinol, 5.20 g, 0.0409 mole [0341] Ti(0iP)4 (titanium (IV) isopropoxide), 1.16g, 4.08mmole [0342] toluene, 120 ml [0343] isopropyl ether, 60 ml [0344] water, 80 ml [0345] Procedure [0346] C5 (9.10 g; 0.0201 mole), (R)-3-quinuclidinol (5.20 g; 0.0409 mole), Ti(OiP)4 (1.16 g; 4.08 mmole), and toluene (120 ml) were charged in reactor and with stirring. The reaction was equipped with a packing column (24/40; 15 cm in length) and a short path (24/40), which was heated to distill out EtOH, IPA and toluene (oil bath temperature 160 °C). The reaction mixture was monitored by HPLC for the completion of the reaction. In this exemplary synthesis, the HPLC showed the starting material had been completely consumed. Pressure was reduced to facilitate removal of the toluene. The reaction was cooled to room temperature and quenched with 40 ml water and 60 ml IPE, followed by washing the IPE layers with water (20ml; 2 times) and concentrating, providing a yellow oil compound crude C6(11.70g).

[0347] g. Synthesis of C7

Bn2N'"

OCH, C6 O,,(

5%Pd/C

IPA H2N"'

OCH,

C7 [0348] Raw material [0349] C6,11.70 g, 0.0220 mole [0350] 5% Pd/C, LO g [0351] IPA, 30 ml [0352] Procedure [0353] C7 (11.70g), 5%Pd/C (l.Og) and IPA (30 ml) were charged in hydrogenation reactor (N2 inert; H2 at 5 atmospheres). The mixture was stirred and heated in a 70° C water bath for 7 hours. The reaction mixture was monitored by HPLC and TLC for the completion of the reaction, which showed that the starting material had been completely consumed. The reaction was cooled to room temperature and filtering through a pad of celite with IPA rinsing. The filtrate was concentrated to provide a 6.66 g crude oil of C7. 59 WO 2007/028073 PCT/US2006/034322 [0354] h. Synthesis of ATI-7505 base

ATI-7505 base [0355] Raw material [0356] 4-amino-5-chloro-2-methoxy-benzoic acid, 5.0 g, 0.0249 mole [0357] THF, 30 g

[0358] triethylamine, 4.7 g, 0.0465 mole [0359] pivaloyl chloride, 2.7 g, 0.0225 mole [0360] C7, 6.66g, 0.0189 mole [0361] diethyl ketone (DEK), 100 ml [0362] 32% HCL

[0363] water [0364] 45% NaOH

[0365] Procedure [0366] Pivaloyl chloride (2.7 g; 0.0225 mol) was added dropwise to a solution of the 4-amino-5-chloro-2-methoxy-benzoic acid (5.0 g; 0.0249 mol) and triethylamine (4.7 g; 0.0465 mmol) in THF (20g) at room temperature. The reaction turned cloudy upon addition and after 60 minutes to this preformed mixed anhydride was added a solution of C7 (6.66 g; 0.0189 mol) in THF (10 g) and allowed to stir at room temperature. HPLC and TLC showed the starting material had been completely consumed.

[0367] The reaction was quenched with water (40 ml) and DEK (40 ml), and 32% HCI was added to pH=4.0. The combined organic layers were washed with water (10 ml; 2 times) and the aqueous layer was collected. DEK (60 ml) was added to the aqueous layer and 45% NaOH was added to pH=12. Extract, separate and drain off the aqueous layer. The combined organic layers were washed with water (10ml; 2 times) and concentrated to provide 12.01g yellow oil ATI-7505 base. 60 WO 2007/028073 PCT/US2006/034322

ATI-7505 [0369] Raw material

[0370] ATI-7505 base, 12.01 g [0371] Ethanol (EtOH), 50 ml [0372] IPA, 70 ml [0373] 32% HCL

[0374] Procedure [0375] The 12.01 g crude product of ATI-7505 base was dissolved in 50ml EtOH. Concentrated 32% HCI was added slowly witli stirring to pH=4.1. After stirring about 16 hours, 50 ml EPA was added and the reaction was stirred for 2 hours. The solid was filtered and rinsed with 20 ml IPA. The solid was dried to constant weight to provide 9.71g of ATI-7505 as a white solid. HPLC purity was 98.65 %.

Example 1 [0376] Preparation of 6-[4R-(4-amino-5-chloro-2-methoxy-benzoylamino)-3S-methoxy- piperidin-l-yl]-hexanoic acid l-aza-bicyclo[2.2.2]oct-3'R-yl ester, dihydrochloride salt

[0377] Step 1: Resolution of Racemic Norcisapride [0378] (-)-2,3-Dibenzoyl-L-tartaric acid ((-)-DBT, about 1 part by weight) was dissolved in ethanol and filtered to remove residual particulates. Separately, racemic norcisapride 61 WO 2007/028073 PCT/US2006/034322 (about 0.8 part by weight) was dissolved in a mixture of ethanol and water and then filtered. The filtrate was heated to about 75°C before adding the (-)-DBT solution. After stirring at this temperature for about 30 minutes, the mixture was slowly cooled for several hours to about 5 °C and the product salt was collected under vacuum filtration and washed with EtOH/HjO mixture. The wetcake was recrystallized fiom EtOH/H2O by heating to about 79 °C and slow cooling to about 5 °C as before. The product was collected on a vacuum filter and washed with EtOHZH2O to give a wetcake.

[0379] The wetcake was suspended in water and the pH was adjusted to about 12 using 7% (W/W) aq. NaOH. The resulting suspension was stirred for about 3 hours at room temperature before filtering under vacuum and washing the solid material with water and drying under vacuum. The product was then retreated with (-)-DBT to form the salt by the same general procedure described above. The isolated salt was then neutralized with aq. NaOH as described above. The product was isolated on a filter and dried as before to provide (+)-norcisapride base (about 0.25 parts by weight). The e.e. by chiral HPLC analysis was about 100% (+)-norcisapride. The optical rotation was about +5° (methanol; 25°C and 589 nm), confirming the positive isomer of norcisapride.

[0380] Step 2: Coupling with Ethyl 6-bromohexanoate [0381] (+)-Norcisapride (about 1 part by weight), potassium carbonate (about 0.48 part by weight) and potassium iodide (about 0.063 part by weight) were suspended in anhydrous USP ethanol. Ethyl 6-bromohexanoate (about 0.76 part by weight) was added slowly to the suspension at room temperature. The mixture was heated to reflux until completion of the reaction. Subsequent cooling to room temperature the reaction mixture was filtered to remove, e.g., inorganic solids, and the filtrate was concentrated under reduced pressure to about one-half the volume. The product was precipitated by slowly adding the crude material to cold water (about 13 parts by weight) with rapid stirring. The precipitate was filtered under vacuum and washed with water and then reprecipitated twice more by dissolution in anhydrous ethanol and slow addition into cold water as before. The resulting wetcake was washed with n-heptane and resuspended in ethyl acetate and n-heptane (1:9; v/v) and stirred for about 1 hour and before filtering and drying under vacuum to yield 0.73 parts by weight of the coupled product as a white solid.

[0382] Step 3: Coupling with (R)-3-Quinuclidinol and Dihydrochloride Salt Formation 62 WO 2007/028073 PCT/US2006/034322 [0383] The ester (1 part by weight) and (R)-3-Quinuclidinol (about 1.12 part by weight) were suspended in toluene before slowly adding titanium (IV) ethoxide (about 0.5 part by weight) to the stirred suspension. The mixture was heated to about 91 °C under a stream of nitrogen, and partial vacuum was applied to the flask through a distillation· apparatus in order to azeotropically remove tlie ethanol. Additional toluene was added as needed to maintain a minimum solvent volume in the flask. The reaction was considered complete after about 33 hours.

[0384] The mixture was cooled to about room temperature and extracted five times with water. The organic layer was concentrated under reduced pressure and the resulting residue was redissolved in EtOH/z'PrOH (about 1:1 v/v) and then filtered through a 0.45 micron membrane filter to remove any particulates. Concentrated hydrochloric acid was added slowly to the stirred filtrate to precipitate out the desired product as the dihydrochloride salt. The resulting suspension was stirred for several hours at room temperature and collected under vacuum filtration and rinsed with EtOH/z'PrOH (1:1; v/v) to provide 0.53 part by weight of the crude product salt.

[0385] Crudedihydrochloride salt was resuspended in ethanol and heated to reflux before cooling to room temperature over about 1 hour. The product was collected under vacuum filtration and rinsed with ethanol· and then air-dried. The solids were resuspended in ethanol and warmed to about 55 °C to give a clear solution before adding warm isopropanol and the product was allowed to precipitate by slow cooling to room temperature. The resulting suspension was stirred for several hours before vacuum filtering and rinsing with, e.g., isopropanol. The product was vacuum dried, initially at room temperature for several hours and then at about 55 °C until a constant weight was achieved.

Example 2 [0386] (+) and (-)-norcisapride can be made from its racemic mixture by resolution of the enantiomers using conventional means such as optically resolving acids, according to the method described in US Patent 6,147,093, or in “Enantiomers, Racemates and Resolutions”, by J. Jacques, A. Collet, and S.H. Wilen (Wiley-Interscience, New York, NY), or in S.H.

Wilen et al., Tetrahedron (1977) 33:2725.

[0387] The 4 isomers can be obtained in low-mg amounts by using preparative column chromatography followed by evaporation of the solvent. This method is useful for preparing small amounts for analytical and characterization purposes. This is a standard separation method used routinely in analytical labs in order to isolate and characterize metabolites. 63 WO 2007/028073 PCT/US2006/034322 [0388] Possible synthetic routes to Compound IV, Compound VI and (+)-Compound Π are described below using (+)-norcisapride as a starting material. The routes to Compound III, Compound V and (-)-Compound Π are identical except that they use (-)-norcisapride as a starting material. Preferably, however, the methods and processes of Methods 2-5 are used to generate Compounds II-VI and the other compounds of the invention. More preferably, the methods of Methods 3-5 are used to make the compounds of the invention.

Example 3 [0389] Production of (+)-Compound II, ethyl ester [0390] A equimolar mixture of (+)-norcisapride and ethyl 6-bromohexanoate (1 equivalent each), a catalytic amount of KI, and K2CO3 (2 equivalents) in DMF is heated at about 60 °C for several hours or until TLC analysis indicates that the reaction is over. After cooling to room temperature, water is added and the mixture is extracted with EtOAc. The combined organic extracts are washed successively with water, 10% LiCl(aq) solution and brine, then dried over Na2SO4. Concentration gives (+)-compound H, ethyl ester.

[0391] Production of (+)-Compound II

[0392] A mixture of crude (+)-compound Π, ethyl ester, from above (1 eq.), KOH (2M, 5 eq.) in MeOH and THF (enough to dissolve) is stirred at room temperature for approximately 1 to 2 hours. The MeOH and THF are removed under vacuum, and the residue is diluted with water. Wash with an organic solvent such as EtOAc. The aqueous layer .is acidified to pH ~5 using HCI. The precipitate is filtered off and dried to give (+)-Compound II.

[0393] Production of Compound IV and Compound VI

[0394] A mixture of (+)-Compound II (1 eq.), (R)-(-)-3-quinuclidinol HCI salt (1 eq.), EDAC (1 eq.) and DMAP (1 eq.) in DMF is heated at around 50C overnight. After cooling and diluting with water, the mixture is purified by chromatography or by crystallization to provide Compound IV. Similarly, using (S)-(+)-quinuclidinol, Compound VI is obtained. [0395] The following compounds are prepared essentially according to methods and procedures described above, particularly those of Methods 2-5 and more preferably according to those of Methods 3-5. The compound names were generated using either ChemDraw Ultra version 8.03, which is available from Cambridgesoft Corporation or ACD Namepro software, version 6.0.

Table of Compounds (3S)-l-azabicyclo[2.2.2]oct-3-yl 6-((35,4#)-4-[(4-amino-5-chloro-2-methoxybenzoyl)amino]-3-methoxypiperidin-l-yl}hexanoate; 64 WO 2007/028073 PCT/US2006/034322

Table of Compounds (35)-l-azabicyclo(2.2.2]oct-3-yl 6-((372,45)-4-((4-amino-5-chloro-2-metlioxybenzoyl)amino]-3-methoxypiperidin-l-yl}hexanoate; (3J2)-1 -azabicyclo[2.2.2]oct-3 -yl 6- {(37?,45)-4-[(4-amino-5-chloro-2-methoxybenzoyl)amino]-3-methoxypiperidin-l-yl}hexanoate; 8-methyl-8-azabicyclo(3.2. l]oct-3-yl 6-((35,472)-4-[(4-amino-5-chloro-2-methoxybenzoyl)amino]-3-methoxypiperidin-l-yl}hexanoate; 4-((((35,47?)-4-((4-amino-5-chloro-2-methoxybenzoyl)amino]-3-methoxypiperidin-l-yl}acetyl)amino]benzoic acid; methyl 4- [({(35,472)-4- [(4-amino-5-chIoro-2-methoxybenzoyl)amino] -3 -methoxypiperidin-1 -yl} acetyl)amino]benzoate; methyl 4-((((35,472)-4-[(4-anhno-5-chloro-2-methoxybenzoyl)amino]-3-methoxypiperidin-l-yl}acetyl)amino3benzoate; methyl 4-((((35,472)-4-[(4-amino-5-chloro-2-methoxybenzoyl)amino]-3-methoxypiperidin-l-yl}acetyl)amino]henzoate; ethyl 4-[( {(35,472)-4-((4-amino-5-chloro-2-methoxybenzoyl)amino]-3 -methoxypiperidin-1 -yl}acetyl)amino]benzoate; isopropyl 4-((((35,472)-4-((4-amino-5-chloro-2-methoxybenzoyl)amino]-3-methoxypiperidin-1-yl} acetyl)amino]benzoate; 2-methoxyethyl 4-((((35,472)-4-((4-amino-5-cliloro-2-methoxybenzoyl)amino]-3-methoxypiperidin-1 -yl} acetyl)amino]benzoate; 2-pyirolidin-l-ylethyI 4-((((35,472)-4-[(4-amino-5-chloro-2-methoxybenzoyl)amino]-3-methoxypiperidin-1 -yl} acetyl)amino]benzoate; l-methylpiperidin-4-yl 4-((((35,472)-4-[(4-amino-5-chloro-2-methoxybenzoyl)amino]-3-methoxypiperidin-1 -yl} acetyl)amino]benzoate; 2-pyridin-2-yiethyl 4-(( ((35,472)-4-((4-amino-5 -chloro-2-methoxybenzoyl)aminoj -3 -methoxypiperidin-1 -yl} acetyl)amino]benzoate; 2-(dimethylamino)ethyl 4-((((35,47?)-4-[(4-amino-5-chloro-2-methoxybenzoyl)amino]-3-methoxypiperidin-1 -yl} acetyl)amino]benzoate; l-methylpiperidin-3-yl 4-((((35,472)-4-((4-ammo-5-chloro-2-methoxybenzoyl)amino]-3-methoxypiperidin-1 -yl} acetyl)amino]benzoate; 2-moipholin-4-ylethyl 4-(( ( (35,472)-4- ((4-amino-5-chloro-2-methoxybenzoyl)amino]-3 -methoxypiperidin-1 -yl} acetyl)amino]benzoate; l,4-dimethylpiperidin-4-yl 4-((((35,47?)-4-[(4-amino-5-chloro-2-methoxybenzoyl)amino]-3-methoxypiperidin-1 -yl} acetyl)amino]benzoate; 4-((((35,472)-4-((4-amino-5-chloro-2-methoxybenzoyl)amino]-3-methoxypiperidin-l-yl}acetyl)amino]benzoic acid; 2-oxo-2-(piperidin-4-ylamino)ethyl 4-((((35,472)-4-[(4-amino-5-chloro-2-methoxybenzoyl)amino]-3-methoxypiperidin-l-yl}acetyl)amino]benzoate; 1-(((35,472)-4-[(4-amino-5-chloro-2-methoxybenzoyl)amino]-3-methoxypiperidin-l-yl}acetyl)piperidine-4-carboxylic acid; 65 WO 2007/028073 PCT/US2006/034322

Table of Compounds methyl l-({(35,4/2)-4-[(4-amino-5-chloro-2-methoxybenzoyl)amino]-3-metlioxypiperidin-l-yl} acetyl)piperidine-4-carboxylate; methyl l-(((35,47?)-4-[(4-amino-5-chloro-2-methoxybenzoyl)amino]-3-methoxypiperidin-l-yl} acetyl)piperidine-4-carboxylate; methyl 1-(( (35,4/2)-4- [(4-amino-5-chloro-2-methoxybenzoyl)amino]-3 -methoxypiperidin-1 -yl} acetyl)piperidine-4-carboxylate; ethyl 1-(((35,47?)-4-[(4-amino-5-chloro-2-methoxybenzoyl)amino]-3-methoxypiperidin-l-yl}acetyl)piperidine-4-carboxylate; 2-methoxyethyl 1-(((35,4/2)-4-[(4-amino-5-chloro-2-methoxybenzoyl)amino]-3-methoxypiperidin-1 -yl} acetyl)piperidine-4-carboxylate; 4- {[(2- {(35,4R)-4-[(4-amino-5-chloro-2-methoxybenzoyl)amino] -3 -methoxypiperidin-1 -yl}ethyl)(methyl)amino]methyl}benzoic acid; methyl 4-(((2-((35,4/2)-4-[(4-amino-5-chloro-2-methoxybenzoyl)amino]-3-methoxypiperidin-l-yl}ethyl)(methyl)amino]methyl}benzoate; methyl 4-(((2-((35,4R)-4-[(4-amino-5-chloro-2-methoxybenzoyl)amino]-3-methoxypiperidin-1 -yl} ethyl)amino]methyl} benzoate; isopropyl 4-(((2-((35,47?)-4-[(4-amino-5-chloro-2-methoxybenzoyl)amino]-3-methoxypiperidin-1 -yl} ethyl)amino]methyl}benzoate; ethyl 4-(((2-((35,472)-4-[(4-amino-5-chloro-2-methoxybenzoyl)amino]-3-methoxypiperidin-l-yl}ethyl)amino]methyl}benzoate Dihydrochloride; (3/?)-l-azabicyclo(2.2.2]oct-3-yl 4-(((2-((35,4/?)-4-((4-amino-5-chloro-2-methoxybenzoyl)amino]-3-methoxypiperidin-l-yl}ethyl)amino]carbonyl}benzoate; (R)-quinuclidin-3-yl 6-((3S,4R)-4-(4-amino-5-chloro-2-methoxybenzamido)-3-methoxypiperidin-l-yl)hexanoate; or 6-((3 S,4R)-4-(4-amino-5 -chloro-2-methoxybenzamido)-3 -methoxypiperidin-1 -yl)hexanoic acid [0396] . Formulation, Administration, and Uses [0397] Dosage rates and routes of administration of the disclosed compounds are similar to those already used in the art and known to the skilled artisan (see, for example, Physicians' Desk Reference, 54th Ed., Medical Economics Company, Montvale, NJ, 2000).

[0398] The magnitude of a prophylactic or therapeutic dose of structural and/or functional analog of cisapride in the acute or chronic management of diseases and/or disorders described herein will vary with the severity of the condition to be treated, and the route of administration. The dose, and perhaps the dose frequency, will also vary according to the age, body weight, and response of the individual patient. In general, the total daily dose range for structural and/or functional analogs of cisapride, for the conditions described herein, is from about 1 mg to about 200 mg, in single or divided doses. Preferably, a daily dose range should be between about 5 mg to about 100 mg, in single or divided doses, while 66 WO 2007/028073 PCT/US2006/034322 most preferably, a daily dose range should be between about 5 mg to about 75 mg, in single or divided doses. It is preferred that the doses are administered from 1 to 4 times a day. In managing tlie patient, the therapy should be initiated at a lower dose, perhaps about 5 mg to about 10 mg, and increased up,to about 50 mg or higher depending on the patient's global response. It is further recommended tiiat children, and patients over 65 years, and those with impaired renal or hepatic function, initially receive low doses, and that they be titrated based on individual response(s) and blood level(s). It may be necessary to use dosages outside these ranges in some cases as will be apparent to those skilled in the art. Further, it is noted that the clinician or treating physician will know how and when to interrupt, adjust, or terminate therapy in conjunction with individual patient response.

[0399] The compounds of the subject invention can be formulated according to known methods for preparing pharmaceutically useful compositions. Formulations are described in detail in a number of sources which are well known and readily available to those skilled in the art. For example, Remington's Pharmaceutical Science by E.W. Martin describes formulations which can be used in connection with the subject invention. In general, the compositions of the subject invention are formulated such that an effective amount of the bioactive compound(s) is combined with a suitable carrier in order to facilitate effective administration of the composition.

[0400] The compositions of the subject invention include compositions such as suspensions, solutions and elixirs; aerosols; or carriers such as starches, sugars, microcrystalline cellulose, diluents, granulating agents, lubricants, binders, disintegrating agents, and the lilce, in the case of oral solid preparations (such as powders, capsules, and tablets) with the oral solid preparations being preferred over the oral liquid preparations. A preferred oral solid preparation is capsules. The most preferred oral solid preparation is tablets. Preferred amounts of active ingredient (i.e., an structural and/or functional analog of cisapride) in a solid dosage fonn are about 5 mg, 10 mg, and 25 mg.

[0401] Further, acceptable carriers can be either solid or liquid. Solid form preparations include powders, tablets, pills, capsules, cachets, suppositories and dispersible granules. A solid carrier can be one or more substances which may act as diluents, flavoring agents, solubilizers, lubricants, suspending agents, binders, preservatives, tablet disintegrating agents or encapsulating materials.

[0402] The disclosed pharmaceutical compositions may be subdivided into unit doses containing appropriate quantities of the active component. The unit dosage form can be a 67 WO 2007/028073 PCT/US2006/034322 packaged preparation, such as packeted tablets, capsules, and powders in paper or plastic containers or in vials or ampules. Also, the unit dosage can be a liquid based preparation or formulated to be incoiporated into solid food products, chewing gum, or lozenge.

[0403] In addition to the common dosage forms set out above, the compounds of the present invention may also be administered by controlled release means and/or delivery devices such as those described in U.S. Pat. Nos.: 3,845,770; 3,916,899; 3,536,809; 3,598,123; and 4,008,719, the disclosures of which are hereby incoiporated by reference in their entirety.

[0404] Any suitable route of administration may be employed for providing the patient with an effective dosage of a structural and/or functional analog of cisapride. For example, oral, rectal, parenteral (subcutaneous, intramuscular, intravenous), transdermal, and like forms of administration may be employed. Dosage forms include tablets, troches, dispersions, suspensions, solutions, capsules, patches, and the like.

[0405] One aspect of the invention provides methods and/or processes for maldng the compounds and compositions of the invention.

[0406] One aspect ofthe invention provides a method of treating gastroesophageal reflux disease in a mammal, while substantially reducing the concomitant adverse effects associated with the administration of cisapride, which comprises administering to a human in need of such treatment, a therapeutically effective amount of a structural and/or functional analog of cisapride, or a pharmaceutically acceptable salt thereof. A preferred aspect is the treatment of gastroesophageal reflux disease in humans.

[0407] Another aspect of the invention provides a composition for the treatment of a human suffering from gastroesophageal reflux disease, which comprises a therapeutically effective amount of a structural and/or functional analog of cisapride, or a pharmaceutically acceptable salt thereof.

[0408] Yet another aspect of the present invention provides a method of eliciting an antiemetic effect in a mammal, while substantially reducing the adverse effects associated with the administration of cisapride, which comprises administering to a mammal in need of such anti-emetic therapy, a therapeutically, effective amount of structural and/or functional analogs of cisapride, or a pharmaceutically acceptable salt thereof. Preferably, the mammal is a human.

[0409] In an additional aspect, the present invention encompasses an anti-emetic composition for the treatment of a mammal in need of anti-emetic therapy, which comprises a 68 WO 2007/028073 PCT/US2006/034322 therapeutically effective amount of a structural and/or functional analog of cisapride, or a pharmaceutically acceptable salt thereof.

[0410] A further aspect of Hie present invention includes a method of treating a condition caused by gastrointestinal motility dysfunction in a mammal which comprises administering to a mammal in need of treatment for gastrointestinal motility dysfunction, a therapeutically effective amount of a structural and/or functional analog of cisapride, or a pharmaceutically acceptable salt thereof. Conditions caused by gastrointestinal motility dysfunction include, but are not limited to, dyspepsia, gastroparesis, constipation, post-operative ileus, and intestinal pseudo-obstruction. Preferably, the mammal is a human.

[0411] The observation that cisapride enters the central nervous system and binds to 5HT4 receptors indicates that cisapride may have centrally-mediated effects. Cisapride is a potent ligand at 5HT4 receptors, and these receptors are located in several areas of the central nervous system. Modulation of serotonergic systems has a variety of behavioral effects. Accordingly, the compounds of the subject invention can be used in the treatment of: 1) cognitive disorders, including but not limited to Alzheimer's disease; 2) behavioral disorders, including but not limited to schizophrenia, mania, obsessive-compulsive disorder, and psychoactive substance use disorders; 3) mood disorders, including but not limited to depression and anxiety; and 4) disorders of control of autonomic function, including but not limited to essential hypertension and sleep disorders.

[0412] Accordingly, the present invention also provides methods of treating cognitive, behavioral, mood, or autonomic function control disorders in a mammal comprising the administration of a therapeutically effective amount of structural and/or functional analog of cisapride, or a pharmaceutically acceptable salt thereof. Preferably, the mammal is a human, [0413] ATI-7505 Binds with High Affinity to 5-HT4 Receptors [0414] The 5-HT4 receptor is known to be the major receptor subtype involved in the prokinetic activity of cisapride in the gut. ATI-7505 has a high binding affinity for 5-HT4 receptor, with a low nanomolar IC5Q. As shown in Table 1, the affinity of ATI-7505 for the 5-HT4 receptor was 18-fold greater than cisapride and at least 360-fold greater than the major metabolite of ATI-7505, the carboxylic acid. 69 WO 2007/028073 PCT/US2006/034322

Table 1. 5-HT4 Receptor Binding

Compound 5-HT4 Receptor Guinea Pig Striatum IC50 (nM) Ki (nM) nH ATI-7505 , 8.3 1.4 0.7 ATI-7500 >3,000 >500 — Cisapride 150 24.9 0.8 nHl Hill coefficient 5-HT4 receptor prototypic reference antagonist [3H]GR113808 (0.70 nM) [0415J ATI-7505 is a Highly Potent Partial Agonist at Human 5-HT4 Receptor [0416] ARYx performed in vitro assays based on adenylyl cyclase stimulation in cells engineered to stably express human 5-HT4 receptor. ATI-7505 proved to be a highly potent' 5-HT4 receptor agonist, whereas its major metabolite, ATI-7500 was relatively weak (Figure 1 and Table 2). The estimated EC50 of ATI-7505 (4 nM) was approximately 10-fold lower than that of cisapride (49 nM), and approximately 100-fold lower than that of ATI-7500 (395 nM). Based on its estimated Emax value, ATI-7505 had 85% of the efficacy of 5-HT (serotonin) (Table 2), demonstrating that ATI-7505 is a partial agonist of HT4 receptors.

Table 2.

Potency and Efficacy (Intrinsic Activity) at Human 5-HT4 Receptor

Compound Potency Efficacy EC50 p m 0 tn 0 % of 5HT (serotonin) 5-HT (serotonin) 46 7 NA ATI-7505 4 8.45 85 ATI-7500 395 6.40 81 Cisapride 49 7 77 ΕΟ®, concentration causing 50% maximal increase in adenylyl cyclase activity pECso, negative logarithm ofthe ΕΟΜ [0417] ATI-7505 Accelerates Gastric Emptying in Fed DogsTo characterize the effects of ATI-7505 on gastric emptying, experiments were performed in a post-prandial model involving conscious dogs instrumented with sets of strain gauge transducers placed on the stomach and small bowel. The objective ofthe experiments was to measure the time required for migrating motor contractions (MMCs) to return to baseline following ingestion of a solid meal. A drug-induced shortening of MMC return time indicated an early end of the digestive period due to accelerated gastric emptying. Immediately after completion of an MMC in the mid-small intestine, various doses of test drugs (vehicle, ATI-7505, or cisapride) were infused intravenously (TV) over 20 minutes. At the end of the drug infusion, the dogs were 70 WO 2007/028073 PCT/US2006/034322 fed a meal. Gut contractions were recorded for a minimum of 60 minutes prior to the start of tlie drug infusion to establish the fasting state and to identify the onset of MMC in the . duodenum, and at least 30 minutes after tlie return of MMC in the duodenum. Quantitative comparisons of the treatments were based on the time of MMC return as an index of gastric emptying following ingestion of a solid meal. As summarized in Figure 2, ATI-7505 · significantly shortened the time of MMC return, indicating an acceleration of gastric emptying in normal fed dogs. Cisapride showed a similar pattern of action.

[0419] ATI-7505 Increases Gastric and Small Intestinal Motor Activity with

Negligible Effect on Colonic Activity [0420] Experiments were performed in fasted, conscious dogs to evaluate the gastric, small intestinal and colonic motor activity of ATI-7505 compared to cisapride. A specific goal was to determine the dose sizes of ATI-7505 (IV and PO) that most closely mimic the pattern and magnitude of contractile activity caused by cisapride at typical therapeutic doses . in dogs (0.5 mg/kg IV; 1 mg/kg PO).

[0421] When given IV and PO, both ATI-7505 and cisapride caused prokinetic effects in the dog gut. The onset of action typically occurred within 1 to 2 minutes and 25 to 30 minutes following IV and PO administration, respectively. The effect of ATI-7505 on gastric and small intestinal motor activity mimicked cisapride. Like cisapride, ATI-7505 appeared to cause dose-dependent stimulation of antral arid small bowel contractility with relatively little effect on colonic motor activity. The prokinetic effects caused by ATI-7505 in the upper GI tract occurred along with a small but significant (p < 0.05) increase in the frequency of giant migrating contractions (GMC).

[0422] ATI-7505 was not associated with the development of retrograde giant migrating contractions (RGC). Like cisapride, ATI-7505 had a minimal effect on migrating motor complex (MMC) characteristics in the antrum as well as proximal, mid and distal small intestine. With regard to MMC frequency and phase IH duration, only one significant difference was noted: PO ATI-7505 increased MMC frequency in the proximal small intestine relative to the controls. The dogs tolerated the IV and PO doses of ATI-7505 well and exhibited no side effects such as diarrhea, anorexia, or weight loss.

[0423] Overall, the results showed that on a mg/kg-basis, ATI-7505 was approximately twice as potent as cisapride. In addition, the actions of ATI-7505, like those of cisapride, were consistent with a mechanism involving the facilitation of acetylcholine release from enteric neurons rather than a direct smooth muscle action. In conclusion, ATI-7505 increases 71 WO 2007/028073 PCT/US2006/034322 gastric and small intestinal motor activity in a cisapride-like manner with minimal-to-no effect on colonic activity.

[0424] The Metabolism of ATI-7505 is CYP450-Independent [0425] Based on data from pooled human microsomes, ATI-7505 undergoes biotransformation to a single metabolite, ATI-7500, which does not appear to be subject to further metabolism. The conversion of ATI-7505 to ATI-7500 was not dependent on the presence of NADPH. Thus tihe major biotransformation pathway for ATI-7505 occurs independently of CYP450 enzymes.

[0426] ATI-7505 Does Not Inhibit CYP450 Enzymes [0427] To test the potential for ATI-7505 and/or its main metabolite, ATI-7500 to act as CYP450 inhibitors, these two molecules were screened using Gentest Supersomes™. Consistent with published reports, cisapride had significant inhibitory activity against CYP450 enzyme isoforms, CYP3A4,2D6 and to a lesser extent 2C9. Neither ATI-7505 nor its primary metabolite, ATI-7500 displayed significant inhibitory activity against these three CYP450 isoforms, nor against a panel of other isoforms known to play a role in drug metabolism.

[0428] ATI-7505 Has Negligible Affinity for the Cardiac Channel, ΙκΓ [0429] The rapidly activating delayed rectifier potassium (K+) current in humans (human Ikt) is a K+ channel that is encoded by the human-ether-a-go-go-related gene (hERG). Cisapride is known to produce QT interval prolongations via a blockade of Ikt, and it was therefore of interest to determine if ATI-7505 and ATI-7500 have important inhibitory effects on human Ικτ· The test system was mammalian HEK-293 cells expressing the hERG K+ channels, in which the potassium current was measured by whole cell patch-clamp technique. The ranking of the IC50 values was: cisapride (9.5 nM) > ATI-7505 (24,521 nM) > ATI-7500 (204,080 nM) (Table 3). Overall, the findings indicate that ATI-7505 has a significantly lower pro-arrhythmic potential than cisapride and suggest that both ATI-7505 and ATI-7500 have negligible affinity for human Ikt channels. 72

I WO 2007/028073 PCT/US2006/034322

Table 3.

Inhibition of lKr Activity

Compound Activity of lKr in HEK Cells % IKr control (10,000 nM) IC50 ATI-7505 78.0 24521 ATI-7500 88.9 204080 Cisapride 0 . 9.5

Data are normalized to % control tail lKr (current elicited without drug or vehicle present) [0430] ATI-7505 Does not Induce Important Electrophysiological Changes in

Guinea Pig Hearts [0431] The cardiac electrophysiological effects of ATI-7505 were examined in isolated, perfused guinea pig hearts. The study examined ATI-7505, ATI-7500 and cisapride, all of which were each tested at concentrations up to 10,000 nM. The no observed effect level (NOEL) was defined as the highest concentration of test compound, not showing a response that was significantly different from baseline (p < 0.05). The following 6 cardiac parameters were tested: (1) QT interval; (2) MAPD90; (3) SA interval; (4) QRS interval; (5) AH interval; and (6) HV. While ATI-7505 was a very weak modulator of cardiac electrophysiologic parameters, its metabolite, ATI-7500 entirely lacked electrophysiological activity (Table 4). The NOEL for ATI-7500 was > 10,000 nM for the entire set of 6 cardiovascular parameters. Since cisapride had a NOEL of 10 nM for the combined set of 6 cardiac parameters tested, . while ATI-7505 had a combined NOEL of 1,000 nM, ATI-7505 appears to lack the potency of cisapride in modulating cardiac electrophysiologic parameters. Overall, the findings demonstrate that ATI-7505 is significantly safer than cisapride with regard to the potential to induce important cardiac electrophysiologic fluctuations. 73 WO 2007/028073 PCT/US2006/034322

Table 4.

Cardiac Electrophysiologic Parameters in Isolated Perfused

Electrophysiological Parameter No Observed Effect Level (NOEL) Cisapride ATI-7505 ATI-7500 QT Interval 10 1,000 > 10,000 MAPDgo 10 1,000 > 10,000 SA Interval 100 > 10,000 > 10,000 QRS Interval 1,000 > 10,000 > 10,000 AH Interval 1,000 > 10,000 > 10,000 HV Interval 1,000 1,000 > 10,000 Combined Parameters 10 1,000 > 10,000

All molecules were tested at baseline, 10, 100, 1,000, and 10,000 nM.

Other than for. values reported as > 10,000 nM, a significant difference (p < 0.05) from baseline was observed when the molecule was tested at a 10-fold higher [0432] Metabolism in human microsomal preparations [0433] The metabolism of these compounds was studied in pooled human microsomes in the presence and absence of the Cytochrome P-450 cofactor NADPH and both the disappearance of parent and the appearance ofthe corresponding acid metabolite, i.e., the corresponding compound-Π isomer, monitored with time.

[0434] As shown in Table 5, Compounds ΠΙ and IV were rapidly hydrolyzed by esterase to their respective metabolites (+) and (-)-Compound II. The metabolism was not dependent on CYP450 since the rate of hydrolysis was independent on NADPH presence, which is a necessary cofactor for CYP450 to function. In contrast, (±)-S Compounds V and VI appeared to be quite stable with time under the same conditions. In this experiment, the amount of substrate (compounds ΙΠ, IV, V, and VI) remaining in the reaction after 5, 60, and 90 minutes were evaluated by a tandem HPLC-MS method. This remaining amount was correlated with the appearance of the metabolite compound Π. The sum of remaining substrate and compound Π was constant over time and equal to the amount of starting material at time zero, therefore indicating that hydrolysis was the only metabolic reaction taking place.

Table 5: test compounds were incubated in pooled human microsomal preparation in the presence of NADPH cofactor. The remaining amount of test compound and the appearance ofthe metabolite compound II were monitored over 90 minutes. Test compound Compounds IH and TV Compound V and VI Time Remaining Test Compound (ng/mL) Metabolite (ng/mL) Sum Remaining Test Compound (ng/mL) Metabolite (ng/mL) Sum 5 31.3 2 33.3 32.9 1.5 34.4 60 20.7 14.5 35.2 29.9 1.5 31.4 74 WO 2007/028073 PCT/US2006/034322 90 16.9 19.4 36.3 31.9 1.5. 33.4 [0435] Metabolism in fresh human blood, [0436] Test compounds were dissolved in DMSO to make 12.5 mM stock solution and diluted with water, to a final concentration of 2.5mM (DMSO/H2O =20/80). Fresh blood was collected into heparinized tubes from 3 human donors and blood was stored on ice until incubation. Separate aliquots of blood from each donor were pipetted into 1.5 mL centrifuge tubes and the tubes were pre-incubated in a shaking water bath at 37°C for 5 minutes. The reaction was initiated by the addition of 10 pL of the appropriate test compound stock to each tube (final concentration = 100 μΜ). Incubations were quenched after 0, 5, 15, 30 and 60 minutes, by the addition of acetonitrile (750 ml,), centrifuged at 12,000 rpm for 2 minutes and the supernatant analyzed on an Agilent 1100 HPLC system. Separations were accomplished on a Keystone Intersil ODS2, 250X4.6mm, 5 m column. The aqueous mobile phase consisted of 20 mM ammonium acetate buffer (pH 5.7) and the organic phase ' acetonitrile. A gradient was used: initial condition consisted of 20% acetonitrile for 1 minute. The acetonitrile concentration was increased linearly to 90% over the next 8 minutes and held there for 1 minute. The system was then recycled to initial conditions over the course of 1 minute and held there for 4 minutes before the next injection. The peak area for the parent peak was determined by monitoring absorbance at 240, 254 and 290 nM. The results were expressed as amount of initial compound remaining and data subjected to kinetic analysis using WinNonLin. The half-lives for the individual compounds are given below in Table 6.

Table 6

Diastereomeric Configuration Compound Norcis “half’ Quinuclindol “half’ Half-life (min) m - R Subject 1 12.03 Subject 2 10.37 Subject 3 * 9.23 Mean± SD 10.5 ±1.41 IV + R Subject 1 8.47 Subject 2 8.61 Subject 3 8.58 Mean ± SD 8.59±0.077 V - S Subject 1 > 60 min Subject 2 > 60 min Subject 3 - >60 min VI s 75 WO 2007/028073 PCT/US2006/034322

Diastereomeric Configuration Compound Norcis “half’ Quinuclindol “half’ Half-iife (min) Subject 1 > 60 min Subject 2 > 60 min Subject 3 > 60 min [0437] It should be understood that the examples and aspects described herein are for illustrative purposes only and that various modifications or changes in light thereof will be suggested to persons skilled in tlie art and are to be included within the spirit and purview of this application and the scope of the appended claims. Further, all patents, patent applications, provisional applications, and publications referred to or cited herein are incoiporated by reference in their entirety to the extent they are not inconsistent with the explicit teachings of this specification.

[0438] The invention and the manner and process of making and using it, are now described in such full, clear, concise and exact terms as to enable any person skilled in the art to which it pertains, to make and use the same. It is to be understood that the foregoing describes preferred aspects of the; invention and that modifications may be made therein without departing fiom the spirit or scope of the invention as set forth in the claims. To particularly point out and distinctly claim the subject matter regarded as invention, the following claims conclude this specification. 76 , crnxan rwzn ατα inia^n pnow pnvn irn πτ “|»oa ,Ρ’ηη ηχΰπ laoana rw™ na^maa np’-ion .zruwan rwaa mpnan ρ-ίΛ oxnm □innn pv

.(moia nannn) cras&amp;'an -nwa

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2006034322	United States of America	W	2006-08-31
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AU2006284601A1	Australia	A1	2007-03-08
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WO2007028073A3	World Intellectual Property Organization (WIPO)	A3	2007-05-24
US7326787B2	United States of America	B2	2008-02-05
US2008076927A1	United States of America	A1	2008-03-27
NO20081562L	Norway	L	2008-03-28
KR20080041294A	Republic of Korea	A	2008-05-09
EP1919909A2	European Patent Office (EPO)	A2	2008-05-14
CN101258151A	China	A	2008-09-03
ZA200801144B	South Africa	B	2009-01-28
JP2009507033A	Japan	A	2009-02-19
HK1121762A1	Hong Kong, China	A1	2009-04-30
US2009137810A1	United States of America	A1	2009-05-28
RU2008112215A	Russian Federation	A	2009-10-10
US7629466B2	United States of America	B2	2009-12-08
RU2418798C2	Russian Federation	C2	2011-05-20
BRPI0615691A2	Brazil	A2	2011-05-24
CN101258151B	China	B	2012-10-10
AU2006284601B2	Australia	B2	2012-12-20
CN102863374A	China	A	2013-01-09
IL189202AThis record	Israel	A	2013-07-31
EP1919909B1	European Patent Office (EPO)	B1	2013-08-21
JP5308818B2	Japan	B2	2013-10-09
DK1919909T3	Denmark	T3	2013-12-02
ES2436100T3	Spain	T3	2013-12-27
KR101351454B1	Republic of Korea	B1	2014-01-14
CA2620379C	Canada	C	2015-02-24
NO340832B1	Norway	B1	2017-06-26
BRPI0615691A8	Brazil	A8	2017-08-15

4 legal events, as the office reported them to INPADOC

Over the term

Point at a mark for the event

Events

Legal events, newest first
	Event	Code
2020-08-31	Patent renewedKB	KB
2016-07-31	Patent renewedKB	KB
2013-12-31	Patent renewedKB	KB
2013-11-28	Patent grantedGrantedFF	FF