EP3703750B1

Chimeric antigen receptors specific for b-cell maturation antigen and encoding polynucleotides

Abstract

This record has no abstract on file.

EP3703750B1, drawing sheet 1
Sheet 1 of 426

Term

12.1 yearsleft in the term

Expires 1 November 2038.

  1. Priority and filed
  2. Granted
  3. Today
  4. Expires

36 claims: 19 independent, 17 dependent

  1. 1
    A polynucleotide encoding a chimeric antigen receptor (CAR), wherein:(i) the CAR comprises: (a) an extracellular antigen-binding domain that specifically recognizes B cell maturation antigen (BCMA);(b) a spacer of at least 125 amino acids in length;(c) a transmembrane domain;and (d) an intracellular signaling region;and (ii) the nucleic acid sequence encoding the spacer comprises at least one modified splice donor and/or splice acceptor site, the modified splice donor and/or acceptor site comprising one or more nucleotide modifications corresponding to a reference splice donor and/or acceptor site contained in the sequence set forth in SEQ ID NO:621;wherein: the modified splice donor site is set forth in agtctaaatacggac (SEQ ID NO:661), tcaactggtatgtgg (SEQ ID NO:662), accatctccaaggcc (SEQ ID NO:663) and/or gccccaggtttacac (SEQ ID NO:664);and/or the modified splice acceptor site is set forth in cagtttcttcctgtatagtagactcaccgtggataaatcaa (SEQ ID NO:672), gggcaacgtgttcagctgcagcgtgatgcacgaggccctgc (SEQ ID NO: 673) and/or cgccttgtcctccttgtcccgctcctcctgttgccggacct (SEQ ID NO:766).
  2. 4
    The polynucleotide of any of claims 1-3, wherein the encoded spacer comprises a sequence of a hinge region, a C H 2 region and a C H 3 region.
  3. 5
    The polynucleotide of any of claims 1-4, wherein the encoded spacer is or comprises (i) the sequence set forth in SEQ ID NO:649;(ii) a functional variant of SEQ ID NO:649 that has at least 95%, 96%, 97%, 98% or 99% sequence identity to SEQ ID NO:649;or (iii) a contiguous portion of (i) or (ii) that is at least 125 amino acids in length.
  4. 6
    The polynucleotide of any of claims 1-5, wherein the spacer is encoded by the nucleotide sequence set forth in SEQ ID NO:622.
  5. 7
    The polynucleotide of any of claims 1-6, wherein the polynucleotide is codon- optimized for expression in a human cell.
  6. 8
    The polynucleotide of any of claims 1-7, wherein the encoded antigen-binding domain is an antibody fragment comprising a variable heavy chain (V H ) region and a variable light chain (V L ) region.
  7. 11
    The polynucleotide of any of claims 8-10, wherein:the V H region is or comprises the amino acid sequence set forth in SEQ ID NO: 617;and the V L region is or comprises the amino acid sequence set forth in SEQ ID NO:618;the V H region is or comprises the amino acid sequence set forth in SEQ ID NO: 256;and the V L region is or comprises the amino acid sequence set forth in SEQ ID NO:267;the V H region is or comprises the amino acid sequence set forth in SEQ ID NO: 519;and the V L region is or comprises the amino acid sequence set forth in SEQ ID NO:535;the V H region is or comprises the amino acid sequence set forth in SEQ ID NO: 115;and the V L region is or comprises the amino acid sequence set forth in SEQ ID NO:536;or the V H region is or comprises the amino acid sequence set forth in SEQ ID NO: 609;and the V L region is or comprises the amino acid sequence set forth in SEQ ID NO:610
  8. 12
    The polynucleotide of any of claims 8-11, wherein the fragment comprises an scFv.
  9. 13
    The polynucleotide of any of claims 8-12, wherein the V H region is amino- terminal to the V L region or the V H region is carboxy-terminal to the V L region.
  10. 14
    The polynucleotide of any of claims 8-13, wherein:(a) the antigen-binding domain comprises the amino acid sequence selected from any one of SEQ ID NOs: 478, 278, 559, 560, or 442 or an amino acid sequence having at least 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, or 99% sequence identity to the amino acid sequence selected from any one of SEQ ID NOs: 478, 278, 559, 560, or 442;and/or (b) the nucleic acid encoding the antigen-binding domain comprises the sequence of nucleotides set forth in any of SEQ ID NO: 460, 440, 715, 717 or 719.
  11. 15
    The polynucleotide of any of claims 1-14, wherein the intracellular signaling region comprises an activating cytoplasmic signaling domain, wherein the activating cytoplasmic signaling domain is capable of inducing a primary activation signal in a T cell, is a T cell receptor (TCR) component and/or comprises an immunoreceptor tyrosine-based activation motif (ITAM).
  12. 18
    The polynucleotide of any of claims 15-17, wherein the intracellular signaling region further comprises a costimulatory signaling region.
  13. 21
    The polynucleotide of any of claims 1-20, wherein the transmembrane domain is or comprises a transmembrane domain from CD4, CD28, or CD8.
  14. 23
    The polynucleotide of any of claims 1-22, wherein the polynucleotide further encodes a truncated receptor.
  15. 24
    The polynucleotide of any of claims 1-23, wherein the polynucleotide comprises the sequence set forth in any of SEQ ID NOS:751-756 or a sequence that exhibits at least 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, or 99% sequence identity to the sequence set forth in any of SEQ ID NOS: 751-756 and the encoded receptor retains the function to bind to BCMA and retains the reduced RNA heterogeneity.
  16. 25
    A vector comprising the polynucleotide of any of claims 1-24.
  17. 34
    The engineered cell or the composition for the use of any one of claims 31-33, wherein:(a) prior to the administration, the subject has received a lymphodepleting therapy comprising the administration of fludarabine at or about 20-40 mg/m 2 body surface area of the subject, daily, for 2-4 days, and/or cyclophosphamide at or about 200-400 mg/m 2 body surface area of the subject, for 2-4 days, and/or (b) the subject has received a lymphodepleting therapy comprising the administration of fludarabine at or about 30 mg/m 2 body surface area of the subject, daily, and cyclophosphamide at or about 300 mg/m 2 body surface area of the subject, daily, for 3 days.
  18. 35
    The engineered cells or the composition for the use of any of claims 31-34, wherein at or prior to the administration of the dose of cells, the subject has received three or more prior therapies for the disease or disorder.
  19. 36
    The engineered cells or the composition for the use of any of claims 31-35, wherein:(a) at the time of the administration of the dose of cells, and/or at the time of lymphodepleting chemotherapy or leukapheresis, the subject has not had active or history of plasma cell leukemia (PCL), and/or (b) at the time of the administration of the dose of cells the subject has developed secondary plasma cell leukemia (PCL), and/or (c) at the time of administration, the subject: (i) has relapsed or been refractory following at least 3 or at least 4 prior therapies for multiple myeloma;and/or (ii) is an adult subject or is 25 or 35 years of age or older;and/or (iii) has a time from diagnosis of multiple myeloma of approximately 4 years or between 2 and 15 or 2 and 12 years;and/or (iv) has received about 10 or between 3 and 15 or between 4 and 15 prior regimens for multiple myeloma;and/or (v) has been refractory to or not responded to bortezomib, carfilzomib, lenalidomide, pomalidomide and/or an anti-CD38 monoclonal antibody;and/or (vi)has had prior autologous stem cell transplant or has not had prior autologous stem cell transplant;and/or (vii) has IMWG high risk cytogenetics.
Independent claims19