EP2007756A2

Modulators of atp-binding cassette transporters

Abstract

This record has no abstract on file.

EP2007756A2, drawing sheet 1
Sheet 1 of 496

Term

0.5 yearsto projected expiry

Projected expiry 9 April 2027, counted from filing; an application has no term until it is granted.

  1. Priority
  2. Filed
  3. Published
  4. Today
  5. Projected expiry

39 claims: 32 independent, 7 dependent

  1. 1
    Claims of equivalent WO 2007117715 A2 WHA 1 IS (JLAlMtU IS:1. A compound of formula Id: or a pharmaceutically acceptable salt thereof, wherein Ri is -Z A R 4 , wherein each Z A is independently a bond or an optionally substituted branched or straight Ci -6 aliphatic chain wherein up to two carbon units of Z A are optionally and independently replaced by -CO-, -CS-, -CONR A - 5 -CONR A NR A -, -CO 2 -, -OCO-, - NR A CO 2 -, -O-, -NR A CONR A -, -OCONR A -, -NR A NR A -, -NR A CO-, -S-, -SO-, -SO 2 -, -NR A -, -SO 2 NR A -, -NR A SO 2 ~, or -NR A SO 2 NR A -, Each R 4 is independently R A , halo, -OH, -NH 2 , -NO 2 , -CN, or -OCF 3 , Each R A is independently hydrogen, an optionally substituted aliphatic, an optionally substituted cycloaliphatic, an. optionally substituted heterocycloaliphatic, an optionally substituted aryl, or an optionally substituted heteroaryl;Each R 2 is independently -Z B Rs, wherein each Z B is independently a bond or an optionally substituted branched or straight Ci .6 aliphatic chain wherein up to two carbon units of Z B are optionally and independently replaced by -CO-, -CS-, -CONR B -, -CONR B NR B -, - CO 2 -, -OCO-, -NR 8 CO 2 -, -O-, -NR B CONR B -, -OCONR 8 -, -NR B NR B -, -NR 8 CO-, -S-, -SO-, -SO 2 -, -NR 8 -, -SO 2 NR 8 -, -NR 8 SO 2 -, or -NR 8 SO 2 NR 8 -, Each R 5 is independently R 8 , halo, -OH, -NH 2 , -NO 2 , -CN, -CF 3 , or -OCF 3 , Each R B is independently hydrogen, an optionally substituted aliphatic, an optionally substituted cycloaliphatic, an optionally substituted heterocycloaliphatic, an optionally substituted aryl, or an optionally substituted heteroaryl, Or, any two adjacent R 2 groups together with the atoms to which they are attached form an optionally substituted carbocycle or an optionally substituted heterocycle;Ring A is an optionally substituted 3-7 membered monocyclic ring having 0-3 heteroatoms selected from N, O, and S;King tJ is a group naving iormuia ia: Ia or a pharmaceutically acceptable salt thereof, wherein p is 0-
  2. 2
    2, Each R 3 and R' 3 is independently -Z 0 R 6 , where each Z° is independently a bond or an optionally substituted branched or straight Ci-β aliphatic chain wherein up to two carbon units of Z c are optionally and independently replaced by -CO-, -CS-, -CONR C -, - CONR 0 NR 0 -, -CO 2 -, -OCO-, -NR 0 CO 2 -, -O-, -NR C CONR C -, -OCONR C -, -NR C NR C -, -NR 0 CO-, -S-, -SO-, -SO 2 -, -NR C -, -SO 2 NR 0 -, -NR 0 SO 2 -, or -NR 0 SO 2 NR 0 -, Each R 6 is independently R°, halo, -OH, -NH 2 , -NO 2 , -CN, or -OCF 3 , Each R° is independently hydrogen, an optionally substituted aliphatic, an optionally substituted cycloaliphatic, an optionally substituted heterocycloaliphatic, an optionally substituted aryl, or an optionally substituted heteroaryl, Or, any two adjacent R 3 groups together with the atoms to which they are attached form an optionally substituted heterocycle;and n is 1-3, Provided that When ring A is unsubstituted cyclopentyl, n is 1 , R 2 is 4-chloro, and R 1 is hydrogen, then ring B is not 2-(tertbutyl)indol-5-yl, or (2,6-dichlorophenyl(carbonyl))-3-methyl-lH- indol-5-yl;and when ring A is unsubstituted cyclopentyl, n is O, and Ri is hydrogen, then ring B is not 2. The compound ot claim 1 , wherein Ki is -z, " K 4 , z/ " is a oonα, ana K 4 is nyarogen.
  3. 3
    The compound of any of claims I or 2, wherein R 2 is an optionally substituted branched or straight Ci -6 aliphatic.
  4. 4
    The compound of any of claims 1-3, wherein R 2 is a branched or straight Ci -6 aliphatic chain that is optionally substituted with 1-3 of halo, hydroxy, cyano, cycloaliphatic, heterocycloaliphatic, aryl, heteroaryl, or combinations thereof.
  5. 5
    The compound of any of claims 1-2, wherein R 2 is an optionally substituted branched or straight Ci -5 alkoxy.
  6. 6
    The compound of any of claims 1-2, or 5, wherein R 2 is a C 1-5 alkoxy that is optionally substituted with 1-3 of hydroxy, aryl, heteroaryl, cycloaliphatic, heterocycloaliphatic, or combinations thereof.
  7. 7
    The compound of any of claims 1-2, wherein R 2 is hydroxy, halo, or cyano.
  8. 8
    The compound of any of claims 1-2, wherein R 2 is -Z 8 R 5 ;Z B is independently a bond or an optionally substituted branched or straight Cj -4 aliphatic chain wherein up to two carbon units of Z B are optionally and independently replaced by -C(O)-, -O-, -S-, -S(O) 2 -, or -NH-;R 5 is R B , halo, -OH, -NH 2 , -NO 2 , -CN, -CF 3 , or -OCF 3 , and R B is hydrogen or aryl.
  9. 9
    The compound of any of claims 1-2, wherein two adjacent R 2 groups together with the atoms to which they are attached form an optionally substituted carbocycle or an optionally substituted heterocycle or an optionally substituted heteroaryl, either of which is fused to the phenyl of formula I, wherein the carbocycle or heterocycle has formula Ib:Each of Zi 3 Z 2 , Z 3 , Z 4 , and Z 5 is independently a bond, -CR 7 R' 7 - 5 -C(O)-, -NR 7 -, or -O- ;each R 7 is independently -Z D Rg, wherein each Z D is independently a bond or an optionally substituted branched or straight Cj . 6 aliphatic chain wherein up to two carbon units of Z D are optionally and independently replaced by -CO-, -CS-, -CONR D -, -CO 2 -, -OCO-, -NR 0 CO 2 -, -O-, -NR D CONR D -, -OCONR D -, -NR 0 NR 0 -, -NR D CO-, -S-, -SO-, -SO 2 -, -NR D -, -SO 2 NR 0 -, -NR 0 SO 2 -, or -NR 0 SO 2 NR 0 -;tacn Ks is independently K , naio, -υn, -INn 2 , -JMU2, -«-ΛN, -V-Jf 3 , or -U^r 3 ;Each R D is independently hydrogen, an optionally substituted cycloaliphatic, an optionally substituted heterocycloaliphatic, an optionally substituted aryl, or an optionally substituted heteroaryl;and Each R ! 7 is independently hydrogen, optionally substituted Ci^ aliphatic, hydroxy, halo, cyano, nitro, or combinations thereof.
  10. 10
    The compound of any of claims 1-2, or 9, wherein two adjacent R2 groups together with the atoms to which they are attached form a 5-6 membered carbocycle that is optionally substituted with 1-3 of halo, hydroxy, cyano, oxo, cyano, alkoxy, alkyl, or combinations thereof.
  11. 11
    The compound of any of claims 1-2, or 9, wherein two adjacent R2 groups together with the atoms to which they are attached form an optionally substituted 5-7 membered heterocycle having 1-3 heteroatoms independently selected from N, O, and S.
  12. 12
    The compound of any of claims 1-2, or 9, wherein two adjacent R 2 groups together with the atoms to which they are attached form a heterocycle selected from:
  13. 13
    The compound of any of claims 1 -2, wherein each R 2 group is independently selected from hydrogen, halo, -OCH 3 , -OH, -CH 2 OH, -CH 3 , and -OCF 3 , or two adjacent two adjacent R 2 groups together with the atoms to which they are attached form
  14. 14
    The compound of any of claims 1-13, wherein ring A is a cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, or cycloheptyl, each of which is optionally substituted with 1-3 of halo, hydroxy, Ci -5 aliphatic, or combinations thereof.
  15. 15
    The compound of any of claims 1-13, wherein ring A is an optionally substituted 3-7 membered monocyclic heterocycloaliphatic.
  16. 16
    The compound of any of claims 1-13, wherein ring A is one selected from wherein Each R 9 is independently -Z E Rio, wherein each Z E is independently a bond or an optionally substituted branched or straight Ci^ aliphatic chain wherein up to two carbon units of Z E are optionally and independently replaced by -CO-, -CS-, -CONR E -, -CO 2 -, -OCO-, -NR E CO 2 -, -O-, -NR E CONR E -, -OCONR E -, -NR E NR E -, -NR E CO-, -S-, -SO-, -SO 2 -, -NR E -, -SO 2 NR E -, -NR E SO 2 -, or -NR E SO 2 NR E -;Each Rio is independently R E , -OH, -NH 2 , -NO 2 , -CN, -CF 3 , oxo, or -OCF 3 , Each R E is independently hydrogen, an optionally substituted cycloaliphatic, an optionally substituted heterocycloaliphatic, an optionally substituted aryl, or an optionally substituted heteroaryl;and q is 0-5.
  17. 17
    The compound of any of claims 1-16, wherein ring B is
  18. 18
    The compound of any of claims 1-17, wherein ring B is
  19. 19
    The compound of any of claims 1-17, wherein one of R' 3 or R 3 is an optionally substituted acyl group.
  20. 20
    The compound of any of claims 1-17, wherein one of R 3 or R' 3 is an <alkoxy)carbonyl optionally substituted with 1-3 of halo, hydroxy, or combinations thereof.
  21. 21
    The compound of any of claims 1-17, wherein one of R 3 or K' 3 is an (aliphatic)carbonyl optionally substituted with 1-3 of halo, hydroxy, or combinations thereof.
  22. 22
    The compound of any of claims 1-17, wherein one of R 3 or R' 3 is a (cycloaliphatic)carbonyl or a (heterocycloaliphatic)carbonyl, each is optionally substituted with 1-3 of aliphatic, halo, hydroxy, nitro, cyano, or combinations thereof.
  23. 24
    The compound of any of claims 1-17, wherein R 3 is optionally substituted (aliphatic)amido that is attached to the 2 or 3 position on the indole ring of formula Ia.
  24. 25
    The compound of any of claims 1-17 or 24, wherein R 3 is (N 5 N- dimethyl(amino))carbonyl, (methyl(amino))carbonyl, (ethyl(amino))carbonyl, (propyl(amino))carbonyl, (prop-2-yl(amino))carbonyl, (dimethyl(but-2-yl(amino)))carbonyl, (tertbutyl(amino))carbonyl, (butyl(amino))carbonyl, each of which is optionally substituted with 1-3 of halo, hydroxy, cycloaliphatic, heterocycloaliphatic, aryl, heteroaryl, or combinations thereof.
  25. 26
    The compound of any of claims 1-17 wherein R' 3 is wherein R 31 is H or a C i- 2 aliphatic that is optionally substituted with 1-3 of halo, -OH, or combinations thereof, R3 2 is -L-R 33 , wherein L is a bond, -CH 2 -, -CH 2 O-, -CH 2 NHS(O) 2 -, -CH 2 C(O)-, - CH 2 NHC(O)-, or -CH 2 NH-, and R 33 is hydrogen, or Ci -2 aliphatic, cycloaliphatic, heterocycloaliphatic, or heteroaryl, each of which is optionally subsitututed with 1 of -OH, - NH 2 , or -CN.
  26. 28
    The compound of any of claims 1 -29, wherein R 3 is hydrogen.
  27. 29
    The compound of any of claims 1-17, wherein R' 3 is independently -Z 0 R 6 , where each Z c is independently a bond or an optionally substituted branched or straight Q-β aliphatic chain wherein up to two carbon units of Z c are optionally and independently replaced by -CO-, -CS-, -CONR C ~, -CONR 0 NR 0 -, -CO 2 -, -OCO-, -NR 0 CO 2 -, -O-, -NR 0 CONR 0 -, -OCONR"-, -NR ^ NIC-, NfCCO-, -S-, -ΪSO-, -SU 2 -, -JNK " -, -SU 2 MK.--. -NK^u 2 -, or -NR C SO 2 NR C -, wherein each R 6 is independently R c , halo, -OH, -NH 2 , -NO 2 , -CN, or - OCF 3 ., and each R c is independently hydrogen, an optionally substituted aliphatic, an optionally substituted cycloaliphatic, an optionally substituted heterocycloaliphatic, or an optionally substituted heteroaryl.
  28. 30
    A compound having the structure of compound numbers 1-306 as shown in Table 1.
  29. 31
    A pharmaceutical composition comprising a compound as described in any of claims 1-30 and a pharmaceutically acceptable carrier.
  30. 32
    A method of modulating ABC transporter activity comprising the step of contacting said ABC transporter with a compound of the formula:or a pharmaceutically acceptable salt thereof, wherein Ri is -Z A R 4 , wherein each Z Λ is independently a bond or an optionally substituted branched or straight Ci_β aliphatic chain wherein up to two carbon units of Z A are optionally and independently replaced by -CO-, -CS-, -CONR A -, -CONR A NR A -, -CO 2 -, -OCO-, -NR A CO 2 -, -O-, -NR A CONR A -, -OCONR A -, -NR A NR A -, -NR A CO- > -S-, -SO-, -SO 2 -, -NR A -, -SO 2 NR A -, -NR A SO 2 -, or -NR A SO 2 NR A -, Each R 4 is independently R A , halo, -OH, -NH 2 , -NO 2 , -CN, or -OCF 3 , Each R Λ is independently hydrogen, an optionally substituted aliphatic, an optionally substituted cycloaliphatic, an optionally substituted heterocycloaliphatic, an optionally substituted aryl, or an optionally substituted heteroaryl;Each R 2 is independently -Z 8 Rs, wherein each Z B is independently a bond or an optionally substituted branched or straight Ci -6 aliphatic chain wherein up to two carbon units of Z B are optionally and independently replaced by -CO-, -CS-, -CONR B -, -CONR 8 NR 8 -, - CO 2 -, -OCO-, -NR 8 CO 2 -, -O-, -NR 8 CONR 8 -, -OCONR 8 -, -NR 8 NR 8 -, -NR 8 CO-, -S-, -SO-, -SO 2 -, -NR 8 -, -SO 2 NR 8 -, -NR 8 SO 2 -, or -NR 8 SO 2 NR 8 -, Each R 5 is independently R B , halo, -OH, -NH 2 , -NO 2 , -CN, -CF 3 , or -OCF 3 , Each R B is independently hydrogen, an optionally substituted aliphatic, an optionally substituted cycioaiipnatic, an optionally suostituteα neterocycioaπpnauc, an optionally substituted aryl, or an optionally substituted heteroaryl, Or, any two adjacent R 2 groups together with the atoms to which they are attached form an optionally substituted carbocycle or an optionally substituted heterocycle;Ring A is an optionally substituted 3-7 membered monocyclic ring having 0-3 heteroatoms selected from N, O, and S;Ring B is a group having formula Ia: Ia or a pharmaceutically acceptable salt thereof, wherein p is 0-2, Each R 3 and R' 3 is independently -Z C R 6 , where each Z° is independently a bond or an optionally substituted branched or straight Ci-e aliphatic chain wherein up to two carbon units of Z c are optionally and independently replaced by -CO-, -CS-, -CONR C -, - CONR C NR C -, -CO 2 -, -OCO-, -NR C CO 2 -, -O-, -NR 0 CONR 0 -, -OCONR 0 -, -NR 0 NR 0 -, -NR 0 CO-, -S-, -SO-, -SO 2 -, -NR C -, -SO 2 NR 0 -, -NR 0 SO 2 -, or -NR 0 SO 2 NR 0 -, Each R 6 is independently R°, halo, -OH, -NH 2 , -NO 2 , -CN, or -OCF 3 , Each R°.is independently hydrogen, an optionally substituted aliphatic, an optionally substituted cycloaliphatic, an optionally substituted heterocycloaliphatic, an optionally substituted aryl, or an optionally substituted heteroaryl, Or, any two adjacent R 3 groups together with the atoms to which they are attached form an optionally substituted heterocycle;and n is 1-3.
  31. 34
    The method of any of claims 32-33, wherein the ABC transporter is CFTR.
  32. 36
    A method of modulating ABC transporter activity comprising the step of contacting said ABC transporter with a compound as shown in Table 1.
  33. 37
    A kit for use in measuring the activity of an ABC transporter or a fragment thereof in a biological sample in vitro or in vivo, comprising:(i) a composition comprising a compound according to any of claims 1-30 or 32;and (ii) instructions for: a) contacting the composition with the biological sample;and b) measuring activity of said ABC transporter or a fragment thereof.
Independent claims33