EP1523489A2

Modified 2' and 3' -nucleoside produgs for treating flaviridae infections

Abstract

This record has no abstract on file.

EP1523489A2, drawing sheet 1
Sheet 1 of 223

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Projected expiry passed 27 June 2023, 3.2 years ago.

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49 claims: 13 independent, 36 dependent

  1. 1
    Claims of equivalent WO 2004002999 A2 CLAIMS What is claimed is:1. A compound of Formula (I): (I) or a pharmaceutically acceptable salt thereof, wherein: R 1 , R 2 and R 3 are independently H;phosphate;straight chained, branched or cyclic alkyl;acyl;CO-alkyl, CO-aryl, CO-alkoxyalkyl, CO-aryloxyalkyl, CO-substituted aryl, sulfonate ester;benzyl, wherein the phenyl group is optionally substituted with one or more substituents;alkylsulfonyl;arylsulfonyl;aralkylsulfonyl;a lipid;an amino acid;an amino acid residue;a carbohydrate;a peptide;cholesterol;or pharmaceutically acceptable leaving group which when administered in vivo is capable of providing a compound wherein R 1 , R 2 and/or R 3 is independently H or phosphate;wherein at least one of R 2 and R 3 is not hydrogen;and wherein: Y 1 is hydrogen, bromo, chloro, fluoro, iodo, CN, OH, OR 4 , NH 2 , NHR 4 , NR 4 R 5 , SH or SR 4 ;X 1 is a straight chained, branched or cyclic optionally substimted alkyl, CH 3 , CF 3 , C(Y 3 ) 3 ,
  2. 2
    2-Br-ethyl, CH 2 F, CH 2 C1, CH 2 CF 3 , CF 2 CF 3 , C(Y 3 ) 2 C(Y 3 ) 3 , CH 2 OH, optionally substimted alkenyl, optionally substituted alkynyl, COOH, COOR 4 , COO-alkyl, COO-aryl, CO-Oalkoxyalkyl, CONH 2 , CONHR 4 , CON(R 4 ) 2 , chloro, bromo, fluoro, iodo, CN, N 3 , OH, OR 4 , NH 2 , NHR 4 , NR 4 R 5 , SH or SR 5 ; and X 2 is H, straight chained, branched or cyclic optionally substituted alkyl, CH 3 , CF 3 , C(Y 3 ) 3 , 2-Br-ethyl, CH 2 F, CH 2 C1, CH 2 CF 3 , CF 2 CF 3 , C(Y 3 ) 2 C(Y 3 ) 3 , CH 2 OH, optionally substimted alkenyl, optionally substituted alkynyl, COOH, COOR 4 , COO-alkyl, COO-aryl, CO-Oalkoxyalkyl, CONH 2 , CONHR 4 , CON(R 4 ) 2 , chloro, bromo, fluoro, iodo, CN, N 3 , OH, OR 4 , NH 2 , NHR 4 , NR 4 R 5 , SH or SR 5 ; and wherein each Y 3 is independently H, F, Cl, Br or I; and eeaacchh ! R 4 and R 5 is independently hydrogen, acyl, alkyl, lower alkyl, alkenyl, alkynyl or cycloalkyl A compound of Formula (II):(II) or a pharmaceutically acceptable salt thereof, wherein: R 1 , R 2 and R 3 are independently H;phosphate;straight chained, branched or cyclic alkyl;acyl;CO-alkyl, CO-aryl, CO-alkoxyalkyl, CO-aryloxyalkyl, CO-substituted aryl, sulfonate ester;benzyl, wherein the phenyl group is optionally substituted with one or more substituents;alkylsulfonyl;arylsulfonyl;aralkylsulfonyl;a lipid;an amino acid;an amino acid residue;a carbohydrate;a peptide;cholesterol;or pharmaceutically acceptable leaving group which when administered in vivo is capable of providing a compound wherein R 1 , R 2 and/or R 3 is independently H or phosphate;wherein at least one of R 2 and R 3 is not hydrogen;and wherein: Y 1 is hydrogen, bromo, chloro, fluoro, iodo, CN, OH, OR 4 , NH 2 , NHR 4 , NR 4 R 5 , SH or SR 4 ;X 1 is a straight chained, branched or cyclic optionally substituted alkyl, CH 3 , CF 3 , C(Y 3 ) 3 , 2-Br-ethyl, CH 2 F, CH 2 C1, CH 2 CF 3 , CF 2 CF 3 , C(Y 3 ) 2 C(Y 3 ) 3 , CH 2 OH, optionally substimted alkenyl, optionally substituted alkynyl, COOH, COOR 4 , COO-alkyl, COO-aryl, CO-Oalkoxyalkyl, CONH 2 , CONHR 4 , CON(R 4 ) 2 , chloro, bromo, fluoro, iodo, CN, N 3 , OH, OR 4 , NH 2 , NHR 4 , NR 4 R 5 , SH or SR 5 ;and X 2 is H, straight chained, branched or cyclic optionally substituted alkyl, CH 3 , CF 3 , C(Y 3 ) 3 , 2-Br-ethyl, CH 2 F, CH 2 C1, CH 2 CF 3 , CF 2 CF 3 , C(Y 3 ) 2 C(Y 3 ) 3 , CH 2 OH, optionally substituted alkenyl, optionally substimted alkynyl, COOH, COOR 4 , COO-alkyl, COO-aryl, CO-Oalkoxyalkyl, CONH 2 , CONHR 4 , CON(R 4 ) 2 , chloro, bromo, fluoro, iodo, CN, N 3 , OH, OR 4 , NH 2 , NHR 4 , NR 4 R 5 , SH or SR 5 ;and wherein each Y 3 is independently H, F, Cl, Br or I;and each R 4 and R 5 is independently hydrogen, acyl, alkyl, lower alkyl, alkenyl, alkynyl or cycloalkyl.
  3. 3
    A compound of Formula (III), (IV) or (V):(III) (IV) (V) or a pharmaceutically acceptable salt thereof, wherein: R 1 , R 2 and R 3 are independently H;phosphate;straight chained, branched or cyclic alkyl;acyl;CO-alkyl, CO-aryl, CO-alkoxyalkyl, CO-aryloxyalkyl, CO-substituted aryl, sulfonate ester;benzyl, wherein the phenyl group is optionally substituted with one or more substituents;alkylsulfonyl;arylsulfonyl;aralkylsulfonyl;a lipid;an amino acid;an amino acid residue;a carbohydrate;a peptide;cholesterol;or pharmaceutically acceptable leaving group which when administered in vivo is capable of providing a compound wherein R 1 , R 2 and/or R 3 is independently H or phosphate;wherein at least one of R 2 and R 3 is not hydrogen;and wherein: Base is selected from the group consisting of (A) (B) (C) (D) (E) (F) (G) (H) (I) (J) (K) (L) (M) (N) (O) (P) (Q) (R) (S) (T) (U) (V) (W) (X) 00 (Z) (AA) (AB) (AC) (AD) (AE) (AF) (AG) (AH) (Al) (AJ (BA) (BB) (BC) (BD) (BE) (BF) (BG) (BH) (Bl) (BJ) (BK) (BL) (BM) (BN) (BO) (BP) (BQ) (BR) (BS) (BT) (BU) (BV) (BW) (BX) (BY) (BZ) (BAA) (BAB) (BAG) (BAD) (BAE) (BAF) each R 4 and R 5 is independently hydrogen, acyl, alkyl, lower alkyl, alkenyl, alkynyl or cycloalkyl;each W 1 , W 2 , W 3 and W 4 is independently N, CH, CF, CI, CBr, CCl, CCN, CCH 3 , CCF 3 , CCH 2 CH 3 , CC(0)NH 2 , CC(0)NHR 4 , CC(0)N(R 4 ) 2 , CC(0)OH, CC(0)OR 4 or CX 3 ;each W* is independently O, S, NH or NR 4 ;X is O, S, S0 2 , CH 2 , CH 2 OH, CHF, CF 2 , C(Y 3 ) 2 , CHCN, C(CN) 2 , CHR 4 or C(R 4 ) 2 ;X* is CH, CF, CY 3 or CR 4 ;X 2 is H, straight chained, branched or cyclic optionally substimted alkyl, CH 3 , CF 3 , C(Y 3 ) 3 , 2-Br-ethyl, CH 2 F, CH 2 C1, CH 2 CF 3 , CF 2 CF 3 , C(Y 3 ) 2 C(Y 3 ) 3 , CH 2 OH, optionally substituted alkenyl, optionally substituted alkynyl, COOH, COOR 4 , COO-alkyl, COO-aryl, CO-Oalkoxyalkyl, CONH 2 , CONHR 4 , CON(R 4 ) 2 , chloro, bromo, fluoro, iodo, CN, N 3 , OH, OR 4 , NH 2 , NHR 4 , NR 4 R 5 , SH or SR 5 ;each X 3 is independently a straight chained, branched or cyclic optionally substituted alkyl, CH 3 , CH 2 CN, CH 2 N 3 , CH 2 NH 2 , CH 2 NHCH 3 , CH 2 N(CH 3 ) 2 , CH 2 OH, halogenated alkyl, CF 3 , C(Y 3 ) 3 , 2-Br-ethyl, CH 2 F, CH 2 C1, CH 2 CF 3 , CF 2 CF 3 , C(Y 3 ) 2 C(Y 3 ) 3 , optionally substimted alkenyl, haloalkenyl, Br-vinyl, optionally substimted alkynyl, haloalkynyl, N 3 , CN, -C(O)OH, -C(O)OR 4 , -C(O)O(lower alkyl), -C(O)NH 2 , -C(O)NHR 4 , -C(O)NH(lower alkyl), -C(O)N(R 4 ) 2 , -C(O)N(lower alkyl) 2 , OH, OR 4 , -O(acyl), -O(lower acyl), -O(alkyl), -O(lower alkyl), -O(alkenyl), -O(alkynyl), -O(aralkyl), -O(cycloalkyl), - S(acyl), -S(lower acyl), -S(R 4 ), -S(lower alkyl), -S(alkenyl), -S(alkynyl), -S(aralkyl), -S(cycloalkyl), chloro, bromo, fluoro, iodo, NH 2 , -NH(lower alkyl), -NHR 4 , -NR 4 R 5 , -NH(acyl), -N(lower alkyl) 2 , -NH(alkenyl), -NH(alkynyl), -NH(aralkyl), -NH(cycloalkyl), or -N(acyl) 2 ;each Y is independently selected from the group consisting of H, optionally substituted lower alkyl, cycloalkyl, alkenyl, alkynyl, CH 2 OH, CH 2 NH 2 , CH 2 NHCH 3 , CH 2 N(CH 3 ) 2 , CH 2 F, CH 2 C1, CH 2 N 3 , CH 2 CN, CH 2 CF 3 , CF 3 ,CF 2 CF 3 , CH 2 CO 2 R, (CH 2 ) m COOH, (CH 2 ) m COOR, (CH 2 ) m CONH 2 , (CH 2 ) m CONR 2 , and (CH 2 ) m CONHR;R is H, alkyl or acyl;Y 1 is hydrogen, bromo, chloro, fluoro, iodo, CN, OH, OR 4 , NH 2 , NHR 4 , NR R 5 , SH or SR 4 ;each Y 2 is independently O, S, NH or NR 4 ;and each Y 3 is independently H, F, Cl, Br or I;wherein for Base (B), W 4 cannot be CH if W 1 , W 2 and W 3 are N;wherein for Base (E), (F), (K), (L), (W) and (X), W 4 cannot be CH if W 1 is N;each R 6 is independently an optionally substimted alkyl, CH 3 , CH 2 CN, CH 2 N 3 , CH 2 NH 2 , CH 2 NHCH 3 , CH 2 N(CH 3 ) 2 , CH 2 OH, halogenated alkyl, CF 3 , C(Y 3 ) 3 , 2-Br-ethyl, CH F, CH 2 C1, CH 2 CF 3 , CF 2 CF 3 , C(Y 3 ) 2 C(Y 3 ) 3 , optionally substimted alkenyl, haloalkenyl, Br-vinyl, optionally substimted alkynyl, haloalkynyl, -CH 2 C(O)OH, -CH 2 C(0)OR 4 , -CH 2 C(0)O(lower alkyl), -CH 2 C(O)NH 2 , -CH 2 C(O)NHR 4 , -CH 2 C(O)NH(lower alkyl), -CH 2 C(0)N(R 4 ) 2 , -CH 2 C(0)N(lower alkyl) 2 , -(CH 2 ) m C(0)OH, -(CH 2 ) m C(0)OR 4 , -(CH 2 ) m C(O)O(lower alkyl), -(CH 2 ) m C(O)NH 2 , -(CH 2 ) m C(O)NHR 4 , -(CH 2 ) m C(O)NH(lower alkyl), -(CH 2 ) m C(O)N(R 4 ) 2 , -(CH 2 ) m C(O)N(lower alkyl) 2 , -C(O)OH, -C(O)OR 4 , -C(O)O(lower alkyl), -C(0)NH 2 , -C(0)NHR 4 , -C(0)NH(lower alkyl), -C(0)N(R 4 ) 2 , -C(O)N(lower alkyl) 2 or cyano;each R 7 is independently OH, OR 2 , optionally substimted alkyl, CH 3 , CH 2 CN, CH 2 N 3 , CH 2 NH 2 , CH 2 NHCH 3 , CH 2 N(CH 3 ) 2 , CH 2 OH, halogenated alkyl, CF 3 , C(Y 3 ) 3 , 2- Br-ethyl, CH 2 F, CH 2 C1, CH 2 CF 3 , CF 2 CF 3 , C(Y 3 ) 2 C(Y 3 ) 3 , optionally substimted alkenyl, haloalkenyl, Br-vinyl, optionally substimted alkynyl, haloalkynyl, optionally substimted carbocycle, optionally substimted heterocycle, optionally substituted heteroaryl, -CH 2 C(0)OH, -CH 2 C(O)OR 4 , -CH 2 C(O)O(lower alkyl), -CH 2 C(O)SH, -CH 2 C(O)SR 4 , -CH 2 C(0)S(lower alkyl), -CH 2 C(0)NH 2 , -CH 2 C(O)NHR 4 , -CH 2 C(O)NH(lower alkyl), -CH 2 C(0)N(R 4 ) 2 , -CH 2 C(O)N(lower alkyl) 2 , -(CH 2 ) m C(O)OH, -(CH 2 ) m C(O)OR 4 , -(CH 2 ) m C(O)O(lower alkyl), -(CH 2 ) m C(O)SH, -(CH 2 ) m C(O)SR 4 , -(CH 2 ) m C(0)S(lower alkyl), -(CH 2 ) m C(O)NH 2 , -(CH 2 ) m C(O)NHR 4 , -(CH 2 ) m C(O)NH(lower alkyl), -(CH 2 ) m C(O)N(R 4 ) 2 , -(CH 2 ) m C(O)N(lower alkyl) 2 , -C(O)OH, -C(O)OR 4 , -C(0)0(lower alkyl), -C(O)SH, -C(O)SR 4 , -C(O)S(lower alkyl), -C(O)NH 2 , -C(O)NHR 4 , -C(O)NH(lower alkyl), -C(O)N(R 4 ) 2 , -C(O)N(lower alkyl) 2 , -O(acyl), -O(lower acyl), -O(R 4 ), -O(alkyl), -O(lower alkyl), -O(alkenyl), -O(alkynyl), -O(aralkyl), -O(cycloalkyl), -S(acyl), -S(lower acyl), -S(R 4 ), -S(lower alkyl), -S(alkenyl), -S(alkynyl), -S(aralkyl), -S(cycloalkyl), NO 2 , NH 2 , -NH(lower alkyl), -NHR 4 , -NR 4 R 5 , -NH(acyl), -N(lower alkyl) 2 , -NH(alkenyl), -NH(alkynyl), -NH(aralkyl), -NH(cycloalkyl), -N(acyl) 2 , azido, cyano, SCN, OCN, NCO or halo;alternatively, R 6 and R 7 can come together to form a spiro compound selected from the group consisting of optionally substimted carbocycle or optionally substituted heterocycle;and each m is independently 0, 1 or 2.
  4. 4
    A compound of Formula (VI) or (VII):(VI) (VII) or a pharmaceutically acceptable salt thereof, wherein: R 1 is H;phosphate;straight chained, branched or cyclic alkyl;acyl;CO-alkyl;CO- aryl;CO-alkoxyalkyl;CO-aryloxyalkyl;CO-substituted aryl;sulfonate ester;benzyl, wherein the phenyl group is optionally substimted with one or more substituents;alkylsulfonyl;arylsulfonyl;aralkylsulfonyl;a lipid;an amino acid;an amino acid residue;a carbohydrate;a peptide;cholesterol;or pharmaceutically acceptable leaving group which when administered in vivo is capable of providing a compound wherein R 1 is H or phosphate;and wherein: Base is selected from the group consisting of (B) (G) (H) (I) (J) (K) (L) (M) (N) (O) (P) (Q) (R) (S) (T) (U) (V) (W) (X) (Y) (Z) (AA) (AB) (AC) (AD) (AE) (AF) (AG) (AH) (Al) (AJ) (BA) (BB) (BC) (BD) (BE) (BF) (BG) (BH) (Bl) (BJ) (BK) (BL) (BM) (BN) (BO) (BP) (BQ) (BR) (BU) (BV) (BW) (BX) 2004 (BAA) (BAB) (BAC) (BAD) (BAE) (BAF) each R 4 and R 5 is independently hydrogen, acyl, alkyl, lower alkyl, alkenyl, alkynyl or cycloalkyl;each W 1 , W 2 , W 3 and W 4 is independently N, CH, CF, CI, CBr, CCl, CCN, CCH 3 , CCF 3 , CCH 2 CH 3 , CC(O)NH 2 , CC(O)NHR 4 , CC(O)N(R 4 ) 2 , CC(O)OH, CC(0)OR 4 or CX 3 ;each W* is independently O, S, NH or NR 4 ;X is O, S, SO 2 , CH 2 , CH 2 OH, CHF, CF 2 , C(Y 3 ) 2 , CHCN, C(CN) 2 , CHR 4 or C(R 4 ) 2 ;X* is CH, CF, CY 3 or CR 4 ;X 2 is H, straight chained, branched or cyclic optionally substituted alkyl, CH 3 , CF 3 , C(Y 3 ) 3 , 2-Br-ethyl, CH 2 F, CH 2 C1, CH 2 CF 3 , CF 2 CF 3 , C(Y 3 ) 2 C(Y 3 ) 3 , CH 2 OH, optionally substituted alkenyl, optionally substimted alkynyl, COOH, COOR 4 , COO-alkyl, COO-aryl, CO-Oalkoxyalkyl, CONH 2 , CONHR 4 , CON(R 4 ) 2 , chloro, bromo, fluoro, iodo, CN, N 3 , OH, OR 4 , NH 2 , NHR 4 , NR 4 R 5 , SH or SR 5 ;each X 3 is independently a straight chained, branched or cyclic optionally substituted alkyl, CH 3 , CH 2 CN, CH 2 N 3 , CH 2 NH 2 , CH 2 NHCH 3 , CH 2 N(CH 3 ) 2 , CH 2 OH, halogenated alkyl, CF 3 , C(Y 3 ) 3 , 2-Br-ethyl, CH 2 F, CH 2 C1, CH 2 CF 3 , CF 2 CF 3 , C(Y 3 ) 2 C(Y 3 ) 3 , optionally substituted alkenyl, haloalkenyl, Br-vinyl, optionally substimted alkynyl, haloalkynyl, N 3 , CN, -C(0)OH, -C(0)OR 4 , -C(0)0(lower alkyl), -C(0)NH 2 , -C(0)NHR 4 , -C(0)NH(lower alkyl), -C(0)N(R 4 ) 2 , -C(0)N(lower alkyl) 2 , OH, OR 4 , -O(acyl), -0(lower acyl), -O(alkyl), -0(lower alkyl), -O(alkenyl), -O(alkynyl), -O(aralkyl), -O(cycloalkyl), - S(acyl), -S(lower acyl), -S(R 4 ), -S(lower alkyl), -S(alkenyl), -S(alkynyl), -S(aralkyl), -S(cycloalkyl), chloro, bromo, fluoro, iodo, NH 2 , -NH(lower alkyl), -NHR 4 , -NR 4 R 5 , -NH(acyl), -N(lower alkyl) 2 , -NH(alkenyl), -NH(alkynyl), -NH(aralkyl), -NH(cycloalkyl), or -N(acyl) 2 ;each Y is independently selected from the group consisting of H, optionally substimted lower alkyl, cycloalkyl, alkenyl, alkynyl, CH 2 OH, CH 2 NH 2 , CH 2 NHCH 3 , CH 2 N(CH 3 ) 2 , CH 2 F, CH 2 C1, CH 2 N 3 , CH 2 CN, CH 2 CF 3 , CF 3j CF 2 CF 3 , CH 2 CO 2 R, (CH 2 ) m COOH, (CH 2 ) m COOR, (CH 2 ) m CONH 2 , (CH 2 ) m CONR 2 , and (CH 2 ) m CONHR;R is H, alkyl or acyl;Y 1 is hydrogen, bromo, chloro, fluoro, iodo, CN, OH, OR 4 , NH 2 , NHR 4 , NR 4 R 5 , SH or SR 4 ;each Y 2 is independently O, S, NH or NR 4 ;each Y 3 is independently H, F, Cl, Br or I;wherein for Base (B), W 4 cannot be CH if W 1 , W 2 and W 3 are N;wherein for Base (E), (F), (K), (L), (W) and (X), W 4 cannot be CH if W 1 is N;each R 6 is independently an optionally substimted alkyl, CH 3 , CH 2 CN, CH N 3 , CH 2 NH 2 , CH 2 NHCH 3 , CH 2 N(CH 3 ) 2 , CH 2 OH, halogenated alkyl, CF 3 , C(Y 3 ) 3 , 2-Br-ethyl, CH 2 F, CH 2 C1, CH 2 CF 3 , CF 2 CF 3 , C(Y 3 ) 2 C(Y 3 ) 3 , optionally substimted alkenyl, haloalkenyl, Br-vinyl, optionally substituted alkynyl, haloalkynyl, -CH 2 C(0)OH, -CH 2 C(0)OR 4 , -CH 2 C(0)0(lower alkyl), -CH 2 C(0)NH 2 , -CH 2 C(0)NHR 4 , -CH 2 C(0)NH(lower alkyl), -CH 2 C(O)N(R 4 ) 2 , -CH 2 C(O)N(lower alkyl) 2 , -(CH 2 ) m C(O)OH, -(CH 2 ) m C(O)OR 4 , -(CH ) m C(0)0(lower alkyl), -(CH 2 ) m C(0)NH 2 , -(CH 2 ) m C(0)NHR 4 , -(CH 2 ) m C(0)NH(lower alkyl), -(CH 2 ) ra C(0)N(R 4 ) 2 , -(CH 2 ) m C(0)N(lower alkyl) 2 , -C(0)OH, -C(0)OR 4 , -C(0)0(lower alkyl), -C(0)NH 2 , -C(0)NHR 4 , -C(O)NH(lower alkyl), -C(O)N(R 4 ) 2 , -C(O)N(lower alkyl) 2 or cyano;each R 7 is independently OH, OR 2 , optionally substimted alkyl, CH 3 , CH 2 CN, CH 2 N 3 , CH 2 NH 2 , CH 2 NHCH 3 , CH 2 N(CH 3 ) 2 , CH 2 OH, halogenated alkyl, CF 3 , C(Y 3 ) 3 , 2- Br-ethyl, CH 2 F, CH 2 C1, CH 2 CF 3 , CF 2 CF 3 , C(Y 3 ) 2 C(Y 3 ) 3 , optionally substituted alkenyl, haloalkenyl, Br-vinyl, optionally substituted alkynyl, haloalkynyl, optionally substimted carbocycle, optionally substituted heterocycle, optionally substimted heteroaryl, -CH 2 C(O)OH, -CH 2 C(O)OR 4 , -CH 2 C(O)O(lower alkyl), -CH 2 C(O)SH, -CH 2 C(O)SR 4 , -CH 2 C(O)S(lower alkyl), -CH 2 C(0)NH 2 , -CH 2 C(0)NHR 4 , -CH 2 C(0)NH(lower alkyl), -CH 2 C(0)N(R 4 ) 2 , -CH 2 C(0)N(lower alkyl) 2 , -(CH 2 ) m C(0)OH, -(CH 2 ) m C(0)OR 4 5 -(CH 2 ) m C(O)O(lower alkyl), -(CH 2 ) m C(O)SH, -(CH 2 ) m C(O)SR 4 , -(CH 2 ) m C(O)S(lower alkyl), -(CH 2 ) m C(O)NH 2 , -(CH 2 ) m C(O)NHR 4 , -(CH 2 ) m C(O)NH(lower alkyl), -(CH 2 ) m C(O)N(R 4 ) 2 , -(CH 2 ) m C(O)N(lower alkyl) 2 , -C(O)OH, -C(O)OR 4 , -C(O)O(lower alkyl), -C(O)SH, -C(0)SR 4 , -C(O)S(lower alkyl), -C(O)NH 2 , -C(O)NHR 4 , -C(O)NH(lower alkyl), -C(O)N(R 4 ) 2 , -C(O)N(lower alkyl) 2 , -O(acyl), -O(lower acyl), -O(R 4 ), -O(alkyl), -O(lower alkyl), -O(alkenyl), -O(alkynyl), -O(aralkyl), -O(cycloalkyl), -S(acyl), -S(lower acyl), -S(R 4 ), -S(lower alkyl), -S(alkenyl), -S(alkynyl), -S(aralkyl), -S(cycloalkyl), NO 2 , NH 2 , -NH(lower alkyl), -NHR 4 , -NR 4 R 5 , -NH(acyl), -N(lower alkyl) 2 , -NH(alkenyl), -NH(alkynyl), -NH(aralkyl), -NH(cycloalkyl), -N(acyl) 2 , azido, cyano, SCN, OCN, NCO or halo;alternatively, R 6 and R 7 can come together to form a spiro compound selected from the group consisting of optionally substituted carbocycle or optionally substimted heterocycle;each R 8 and R π is independently hydrogen, an optionally substimted alkyl, CH 3 , CH 2 CN, CH 2 N 3 , CH 2 NH 2 , CH 2 NHCH 3 , CH 2 N(CH 3 ) 2 , CH 2 OH, halogenated alkyl, CF 3 , C(Y 3 ) 3 , 2-Br-ethyl, CH 2 F, CH 2 C1, CH 2 CF 3 , CF 2 CF 3 , C(Y 3 ) 2 C(Y 3 ) 3 , optionally substituted alkenyl, haloalkenyl, Br-vinyl, optionally substimted alkynyl, haloalkynyl, -CH 2 C(0)OH, -CH 2 C(0)OR 4 , -CH 2 C(O)O(lower alkyl), -CH 2 C(O)NH 2 , -CH 2 C(O)NHR 4 , -CH 2 C(O)NH(lower alkyl), -CH 2 C(O)N(R 4 ) 2 , -CH 2 C(O)N(lower alkyl) 2 , -(CH 2 ) m C(O)OH, -(CH 2 ) m C(O)OR 4 , -(CH 2 ) m C(O)O(lower alkyl), -(CH 2 ) m C(O)NH 2 , -(CH 2 ) m C(0)NHR 4 , -(CH 2 ) m C(O)NH(lower alkyl), -(CH 2 ) m C(O)N(R 4 ) 2 , -(CH 2 ) m C(O)N(lower alkyl) 2 , -C(O)OH, -C(0)OR 4 , -C(0)0(lower alkyl), -C(0)NH 2 , -C(0)NHR 4 , -C(0)NH(lower alkyl), -C(0)N(R 4 ) 2 , -C(0)N(lower alkyl) 2 , cyano, NH-acyl or N(acyl) 2 ;each R 9 and R 10 are independently hydrogen, OH, OR 2 , optionally substimted alkyl, CH 3 , CH 2 CN, CH 2 N 3 , CH 2 NH 2 , CH 2 NHCH 3 , CH 2 N(CH 3 ) 2 , CH 2 OH, halogenated alkyl CF 3 , C(Y 3 ) 3 , 2-Br-ethyl, CH 2 F, CH 2 C1, CH 2 CF 3 , CF 2 CF 3 , C(Y 3 ) C(Y 3 ) 3 , optionally substimted alkenyl, haloalkenyl, Br-vinyl, optionally substituted alkynyl, haloalkynyl, optionally substituted carbocycle, optionally substimted heterocycle, optionally substimted heteroaryl, -CH 2 C(0)OH, -CH 2 C(0)OR 4 , -CH 2 C(0)0(lower alkyl), -CH 2 C(O)SH, -CH 2 C(O)SR 4 , -CH 2 C(O)S(lower alkyl), -CH 2 C(O)NH 2 , -CH 2 C(O)NHR 4 , -CH 2 C(O)NH(lower alkyl), -CH 2 C(O)N(R 4 ) 2 , -CH 2 C(O)N(lower alkyl) 2 , -(CH 2 ) m C(O)OH, -(CH 2 ) m C(O)OR 4 , -(CH 2 ) m C(O)O(lower alkyl), -(CH 2 ) m C(O)SH, -(CH 2 ) m C(O)SR 4 , -(CH 2 ) m C(0)S(lower alkyl), -(CH 2 ) m C(0)NH 2 , -(CH 2 ) m C(0)NHR 4 , -(CH 2 ) m C(0)NH(lower alkyl), -(CH 2 ) m C(0)N(R 4 ) 2 , -(CH ) m C(0)N(lower alkyl) 2 , -C(0)OH, -C(O)OR 4 , -C(O)O(lower alkyl), -C(O)SH, -C(O)SR 4 , -C(O)S(lower alkyl), -C(O)NH 2 , -C(O)NHR 4 , -C(O)NH(lower alkyl), -C(O)N(R 4 ) 2 , -C(O)N(lower alkyl) 2 , -O(acyl), -O(lower acyl), -0(R 4 ), -O(alkyl), -0(lower alkyl), -O(alkenyl), -O(alkynyl), -O(aralkyl), -O(cycloalkyl), -S(acyl), -S(lower acyl), -S(R 4 ), -S(lower alkyl), -S(alkenyl), -S(alkynyl), -S(aralkyl), -S(cycloalkyl), N0 2 , NH 2 , -NH(lower alkyl), -NHR 4 , -NR 4 R 5 , -NH(acyl), -N(lower alkyl) 2 , -NH(alkenyl), -NH(alkynyl), -NH(aralkyl), -NH(cycloalkyl), -N(acyl) 2 , azido, cyano, SCN, OCN, NCO or halo;each m is independently 0, 1 or 2;and alternatively, R 6 and R 10 , R 7 and R 9 , R s and R 7 or R 9 and R 11 can come together to form a bridged compound selected from the group consisting of optionally substituted carbocycle or optionally substituted heterocycle or alternatively, R 6 and R 7 or R 9 and R 10 can come together to form a spiro compound selected from the group consisting of optionally substituted carbocycle or optionally substituted heterocycle.
  5. 5
    A compound of Formula (VIII), (IX) or (X):(VIII) (IX) (X) or a pharmaceutically acceptable salt thereof, wherein: wherein R 1 , R 2 and R 3 are independently H;phosphate;straight chained, branched or cyclic alkyl;acyl;CO-alkyl;CO-aryl;CO-alkoxyalkyl;CO-aryloxyalkyl;CO-substituted aryl;sulfonate ester;benzyl, wherein the phenyl group is optionally substimted with one or more substituents;alkylsulfonyl;arylsulfonyl;aralkylsulfonyl;a lipid;an amino acid;an amino acid residue;a carbohydrate;a peptide;cholesterol;or pharmaceutically acceptable leaving group which when administered in vivo is capable of providing a compound wherein R 1 , R 2 and/or R 3 is independently H or phosphate;wherein at least one of R 2 and R 3 is not hydrogen;X is O, S, S0 2 , CH 2 , CH 2 OH, CHF, CF 2 , C(Y 3 ) 2 , CHCN, C(CN) 2 , CHR 4 or C(R 4 ) 2 ;X* is CH, CF, CY 3 , or CR 4 ;each Y 3 is independently H, F, Cl, Br or I;each R 4 and R 5 is independently hydrogen, acyl, alkyl, lower alkyl, alkenyl or cycloalkyl;Base* is a purine or pyrimidine base;each R 12 is independently a substituted alkyl, CH 2 CN, CH 2 N 3 , CH 2 NH 2 , CH 2 NHCH 3 , CH 2 N(CH 3 ) 2 , CH 2 OH, halogenated alkyl, CF 3 , C(Y 3 ) 3 , 2-Br-ethyl, CH 2 F, CH 2 C1, CH 2 CF 3 , CF 2 CF 3 , C(Y 3 ) 2 C(Y 3 ) 3 , substituted alkenyl, haloalkenyl (but not Br-vinyl), substituted alkynyl, haloalkynyl, -CH 2 C(0)OH, -CH 2 C(0)OR 4 , -CH 2 C(O)O(lower alkyl), -CH 2 C(O)NH 2 , -CH 2 C(O)NHR 4 , -CH 2 C(O)NH(lower alkyl), -CH 2 C(O)N(R 4 ) 2 , -CH 2 C(0)N(lower alkyl) 2 , -(CH 2 ) m C(0)OH, -(CH 2 ) m C(0)OR 4 , -(CH 2 ) m C(0)0(lower alkyl), -(CH 2 ) m C(0)NH 2 , -(CH 2 ) m C(0)NHR 4 , -(CH 2 ) m C(0)NH(lower alkyl), -(CH 2 ) m C(0)N(R 4 ) 2 , -(CH 2 ) m C(0)N(lower alkyl) 2 , -C(0)OH, -C(0)OR 4 , -C(0)NH 2 , -C(0)NHR 4 , -C(O)NH(lower alkyl), -C(O)N(R 4 ) 2 , -C(O)N(lower alkyfh;each R 13 is independently substimted alkyl, CH 2 CN, CH 2 N 3 , CH 2 NH 2 , CH 2 NHCH 3 , CH 2 N(CH 3 ) 2 , CH2OH, halogenated alkyl, CF 3 , C(Y 3 ) 3 , 2-Br-ethyl, CH 2 F, CH 2 C1, CH 2 CF 3 , CF 2 CF 3 , C(Y 3 ) 2 C(Y 3 ) 3 , substituted alkenyl, haloalkenyl (but not Br-vinyl), substituted alkynyl, haloalkynyl, optionally substimted carbocycle, optionally substituted heterocycle, optionally substimted heteroaryl, -CH 2 C(O)OH, -CH 2 C(O)OR 4 , -CH 2 C(O)O(lower alkyl), -CH 2 C(0)SH, -CH 2 C(O)SR 4 , -CH 2 C(O)S(lower alkyl), -CH 2 C(0)NH 2 , -CH 2 C(0)NHR 4 , -CH 2 C(0)NH(lower alkyl), -CH 2 C(0)N(R 4 ) 2 , -CH 2 C(0)N(lower alkyl) 2 , -(CH 2 ) m C(0)OH, -(CH 2 ) m C(0)OR 4 5 -(CH 2 ) m C(0)0(lower alkyl), -(CH 2 ) m C(0)SH, -(CH 2 ) m C(0)SR 4 , -(CH 2 ) m C(0)S(lower alkyl), -(CH 2 ) m C(0)NH 2 , -(CH 2 ) m C(0)NHR 4 , -(CH 2 ) m C(0)NH(lower alkyl), -(CH 2 ) m C(0)N(R 4 ) 2 , -(CH 2 ) m C(0)N(lower alkyl) 2 , -C(0)OH, -C(0)OR 4 , -C(0)SH, -C(0)SR 4 , -C(0)S(lower alkyl), -C(O)NH 2 , -C(O)NHR 4 , -C(O)NH(lower alkyl), -C(O)N(R 4 ) 2 , -C(O)N(lower alkyl) 2 , -O(R 4 ), -O(alkynyl), -O(aralkyl), -O(cycloalkyl), - S(acyl), -S(lower acyl), -S(R 4 ), -S(lower alkyl), -S(alkenyl), -S(alkynyl), -S(aralkyl), -S(cycloalkyl), -NHR 4 , -NR 4 R 5 , -NH(alkenyl), -NH(alkynyl), -NH(aralkyl), -NH(cycloalkyl), SCN, OCN, NCO or fluoro;alternatively, R 12 and R 13 can come together to form a spiro compound selected from the group consisting of optionally substituted carbocycle or optionally substimted heterocycle;and each m is independently 0, 1 or 2.
  6. 6
    A compound of Formula (XI) or (XII):(XI) (XII) or a pharmaceutically acceptable salt thereof, wherein: R 1 is H;phosphate;straight chained, branched or cyclic alkyl;acyl;CO-alkyl;CO- aryl;CO-alkoxyalkyl;CO-aryloxyalkyl;CO-substituted aryl;sulfonate ester;benzyl, wherein the phenyl group is optionally substituted with one or more substituents;alkylsulfonyl;arylsulfonyl;aralkylsulfonyl;a lipid;an amino acid;an amino acid residue;a carbohydrate;a peptide;cholesterol;or pharmaceutically acceptable leaving group which when administered in vivo is capable of providing a compound wherein R is H or phosphate;Base is selected from the group consisting of (A) (B) (C) (D) (E) (F) (G) (H) (I) (J) (K) CL) (M) (N) (O) (P) (Q) (R) (S) (T) (U) (V) (W) (X) 00 (Z) (AA) (AB) (AC) (AD) (AE) (AF) (AG) (AH) (Al) (AJ) (BA) (BB) (BC) (BD) (BE) (BF) (BG) (BH) (Bl) (BJ) (BK) (BL) (BM) (BN) (BO) (BP) (BQ) (BR) (BY) (BZ) (BAA) (BAB) (BAC) (BAD) (BAE) (BAF) each W 1 , W 2 , W 3 and W 4 is independently N, CH, CF, CI, CBr, CCl, CCN, CCH 3 , CCF 3 , CCH 2 CH 3 , CC(0)NH 2 , CC(0)NHR 4 , CC(0)N(R 4 ) 2 , CC(0)OH, CC(0)OR 4 or CX 3 ;each W* is independently O, S, NH or NR 4 ;X is O, S, S0 2 , CH 2 , CH 2 OH, CHF, CF 2 , C(Y 3 ) 2 , CHCN, C(CN) 2 , CHR 4 or C(R 4 ) 2 ;X* is CH, CF, CY 3 or CR 4 ;X 2 is H, straight chained, branched or cyclic optionally substituted alkyl, CH 3 , CF 3 , C(Y 3 ) 3 , 2-Br-ethyl, CH 2 F, CH 2 C1, CH 2 CF 3 , CF 2 CF 3 , C(Y 3 ) 2 C(Y 3 ) 3 , CH 2 OH, optionally substimted alkenyl, optionally substimted alkynyl, COOH, COOR 4 , COO-alkyl, COO-aryl, CO-Oalkoxyalkyl, CONH 2 , CONHR 4 , CON(R 4 ) 2 , chloro, bromo, fluoro, iodo, CN, N 3 , OH, OR 4 , NH 2 , NHR 4 , NR 4 R 5 , SH or SR 5 ;each X 3 is independently a straight chained, branched or cyclic optionally substimted alkyl, CH 3 , CH 2 CN, CH 2 N 3 , CH 2 NH 2 , CH 2 NHCH 3 , CH 2 N(CH 3 ) 2 , CH 2 OH, halogenated alkyl, CF 3 , C(Y 3 ) 3 , 2-Br-ethyl, CH 2 F, CH 2 C1, CH 2 CF 3 , CF 2 CF 3 , C(Y 3 ) 2 C(Y 3 ) 3 , optionally substimted alkenyl, haloalkenyl, Br-vinyl, optionally substimted alkynyl, haloalkynyl, N 3 , CN, -C(0)OH, -C(0)OR 4 , -C(0)O(lower alkyl), -C(O)NH 2 , -C(O)NHR 4 , -C(O)NH(lower alkyl), -C(O)N(R 4 ) 2 , -C(O)N(lower alkyl) 2 , OH, OR 4 , -O(acyl), -0(lower acyl), -O(alkyl), -O(lower alkyl), -O(alkenyl), -O(alkynyl), -O(aralkyl), -O(cycloalkyl), - S(acyl), -S(lower acyl), -S(R 4 ), -S(lower alkyl), -S(alkenyl), -S(alkynyl), -S(aralkyl), -S(cycloalkyl), chloro, bromo, fluoro, iodo, NH 2 , -NH(lower alkyl), -NHR 4 , -NR 4 R 5 , -NH(acyl), -N(lower alkyl) 2 , -NH(alkenyl), -NH(alkynyl), -NH(aralkyl), -NH(cycloalkyl), or -N(acyl) 2 ;each Y is independently selected from the group consisting of H, optionally substituted lower alkyl, cycloalkyl, alkenyl, alkynyl, CH 2 OH, CH 2 NH 2 , CH 2 NHCH 3 , CH 2 N(CH 3 ) 2 , CH 2 F, CH 2 C1, CH 2 N 3 , CH 2 CN, CH 2 CF 3 , CF 3 ,CF 2 CF 3 , CH 2 C0 2 R, (CH 2 ) m COOH, (CH 2 ) m COOR, (CH 2 ) m CONH 2 , (CH 2 ) m CONR 2 , and (CH 2 ) m CONHR;R is H, alkyl or acyl;Y 1 is hydrogen, bromo, chloro, fluoro, iodo, CN, OH, OR 4 , NH 2 , NHR 4 , NR 4 R 5 , SH or SR 4 ;each Y 2 is independently O, S, NH or NR 4 ;each Y 3 is independently H, F, Cl, Br or I;wherein for Base (B), W 4 cannot be CH if W 1 , W 2 and W 3 are N;wherein for Base (E), (F), (K), (L), (W) and (X), W 4 cannot be CH if W 1 is N;each R 4 and R 5 is independently hydrogen, acyl, alkyl, lower alkyl, alkenyl, alkynyl or cycloalkyl;each R 12 is independently a substimted alkyl, CH CN, CH 2 N 3 , CH 2 NH 2 , CH 2 NHCH 3 , CH 2 N(CH 3 ) 2 , CH 2 OH, halogenated alkyl, CF 3 , C(Y 3 ) 3 , 2-Br-ethyl, CH 2 F, CH 2 C1, CH 2 CF 3 , CF 2 CF 3 , C(Y 3 ) 2 C(Y 3 ) 3 , substimted alkenyl, haloalkenyl (but not Br-vinyl), substimted alkynyl, haloalkynyl, -CH 2 C(0)OH, -CH 2 C(O)OR 4 , -CH 2 C(O)O(lower alkyl), -CH 2 C(O)NH 2 , -CH 2 C(O)NHR 4 , -CH 2 C(O)NH(lower alkyl), -CH 2 C(O)N(R 4 ) 2 , -CH 2 C(O)N(lower alkyl) 2 , -(CH 2 ) m C(0)OH, -(CH 2 ) m C(0)OR 4 , -(CH 2 ) m C(0)0(lower alkyl), -(CH 2 ) m C(0)NH 2 , -(CH 2 ) m C(0)NHR 4 , -(CH 2 ) m C(0)NH(lower alkyl), -(CH 2 ) m C(0)N(R 4 ) 2 , -(CH 2 ) m C(0)N(lower alkyl) 2 , -C(0)OH, -C(0)OR 4 , -C(0)NH 2 , -C(0)NHR 4 , -C(0)NH(lower alkyl), or -C(0)N(R 4 ) 2 , -C(0)N(lower alkyl) 2 ;each R 13 is independently substimted alkyl, CH 2 CN, CH 2 N 3 , CH 2 NH 2 , CH 2 NHCH 3 , CH 2 N(CH 3 ) 2 , CH 2 OH, halogenated alkyl (including halogenated lower alkyl), CF 3 , C(Y 3 ) 3 , 2-Br-ethyl, CH 2 F, CH 2 C1, CH 2 CF 3 , CF 2 CF 3 , C(Y 3 ) 2 C(Y 3 ) 3 , substimted alkenyl, haloalkenyl (but not Br-vinyl), substituted alkynyl, haloalkynyl, optionally substituted carbocycle, optionally substimted heterocycle, optionally substituted heteroaryl, -CH 2 C(O)OH, -CH 2 C(0)OR 4 , -CH 2 C(0)0(lower alkyl), -CH 2 C(O)SH, -CH 2 C(O)SR 4 , -CH 2 C(0)S(lower alkyl), -CH 2 C(0)NH 2 , -CH 2 C(0)NHR 4 , -CH 2 C(0)NH(lower alkyl), -CH 2 C(0)N(R 4 ) 2 , -CH 2 C(0)N(lower alkyl) 2 , -(CH 2 ) m C(0)OH, -(CH 2 ) m C(0)0R 4 , -(CH 2 ) m C(0)0(lower alkyl), -(CH 2 ) m C(0)SH, -(CH 2 ) m C(0)SR 4 , -(CH 2 ) m C(0)S(lower alkyl), -(CH 2 ) m C(0)NH 2 , -(CH 2 ) m C(0)NHR 4 , -(CH 2 ) m C(0)NH(lower alkyl), -(CH 2 ) m C(0)N(R 4 ) 2 , -(CH 2 ) m C(O)N(lower alkyl) 2 , -C(O)OH, -C(O)OR 4 , -C(O)SH, -C(O)SR 4 , -C(O)S(lower alkyl), -C(O)NH 2 , -C(O)NHR 4 , -C(O)NH(lower alkyl), -C(O)N(R 4 ) 2 , -C(O)N(lower alkyl) 2 , -O(R 4 ), -O(alkynyl), -O(aralkyl), -O(cycloalkyl), -S(acyl), -S(lower acyl), -S(R 4 ), -S(lower alkyl), -S(alkenyl), -S(alkynyl), -S(aralkyl), -S(cycloalkyl), -NHR 4 , -NR 4 R 5 , -NH(alkenyl), -NH(alkynyl), -NH(aralkyl), -NH(cycloalkyl), SCN, OCN, NCO or fluoro;and alternatively, R 12 and R 13 can come together to form a spiro compound selected from the group consisting of optionally substituted carbocycle or optionally substimted heterocycle;each R 8 and R 11 is independently hydrogen, an optionally substimted alkyl (including lower alkyl), CH 3 , CH 2 CN, CH 2 N 3 , CH 2 NH 2 , CH 2 NHCH 3 , CH N(CH 3 ) 2 , CH 2 OH, halogenated alkyl (including halogenated lower alkyl), CF 3 , C(Y 3 ) 3 , 2-Br-ethyl, CH 2 F, CH 2 C1, CH 2 CF 3 , CF 2 CF 3 , C(Y 3 ) 2 C(Y 3 ) 3 , optionally substimted alkenyl, haloalkenyl, Br-vinyl, optionally substimted alkynyl, haloalkynyl, -CH 2 C(0)OH, -CH 2 C(0)OR 4 , -CH 2 C(0)0(lower alkyl), -CH 2 C(O)NH 2 , -CH 2 C(O)NHR 4 , -CH 2 C(O)NH(lower alkyl), -CH 2 C(0)N(R 4 ) 2 , -CH 2 C(0)N(lower alkyl) 2 , -(CH 2 ) m C(0)OH, -(CH 2 ) m C(O)OR 4 , -(CH 2 ) m C(O)O(lower alkyl), -(CH 2 ) m C(O)NH 2 , -(CH 2 ) m C(O)NHR 4 , -(CH 2 ) m C(O)NH(lower alkyl), -(CH 2 ) m C(O)N(R 4 ) 2 , -(CH 2 ) m C(O)N(lower alkyl) 2 , -C(O)OH, -C(O)OR 4 , -C(0)0(lower alkyl), -C(O)NH 2 , -C(0)NHR 4 , -C(0)NH(lower alkyl), -C(0)N(R 4 ) 2 , -C(0)N(lower alkyl) 2 , cyano, NH-acyl or N(acyl) 2 ;each R 9 and R 10 are independently hydrogen, OH, OR 2 , optionally substituted alkyl, CH 3 , CH 2 CN, CH 2 N 3 , CH 2 NH 2 , CH 2 NHCH 3 , CH 2 N(CH 3 ) 2 , CH 2 OH, halogenated alkyl, CF 3 , C(Y 3 ) 3 , 2-Br-ethyl, CH 2 F, CH 2 C1, CH 2 CF 3 , CF 2 CF 3 , C(Y 3 ) 2 C(Y 3 ) 3 , optionally substimted alkenyl, haloalkenyl, Br-vinyl, optionally substimted alkynyl, haloalkynyl, optionally substimted carbocycle, optionally substituted heterocycle, optionally substituted heteroaryl, -CH 2 C(O)OH, -CH 2 C(O)OR 4 , -CH 2 C(O)O(lower alkyl), -CH 2 C(O)SH, -CH 2 C(O)SR 4 , -CH 2 C(O)S(lower alkyl), -CH 2 C(O)NH 2 , -CH 2 C(0)NHR 4 , -CH 2 C(0)NH(lower alkyl), -CH 2 C(0)N(R 4 ) 2 , -CH 2 C(0)N(lower alkyl) 2 , -(CH 2 ) m C(0)OH, -(CH 2 ) m C(0)OR 4 , -(CH 2 ) m C(0)0(lower alkyl), -(CH 2 ) m C(0)SH, -(CH 2 ) m C(0)SR 4 , -(CH 2 ) m C(0)S(lower alkyl), -(CH 2 ) m C(0)NH 2 , -(CH 2 ) m C(0)NHR 4 , -(CH 2 ) m C(0)NH(lower alkyl), -(CH 2 ) m C(0)N(R 4 ) 2 , -(CH 2 ) m C(0)N(lower alkyl) 2 , -C(0)OH, -C(0)OR 4 , -C(0)0(lower alkyl), -C(0)SH, -C(0)SR 4 , -C(0)S(lower alkyl), -C(0)NH 2 , -C(O)NHR 4 , -C(0)NH(lower alkyl), -C(0)N(R 4 ) 2 , -C(O)N(lower alkyl) 2 , -O(acyl), -O(lower acyl), -0(R 4 ), -O(alkyl), -0(lower alkyl), -O(alkenyl), -O(alkynyl), -O(aralkyl), -O(cycloalkyl), - S(acyl), -S(lower acyl), -S(R 4 ), -S(lower alkyl), -S(alkenyl), -S(alkynyl), -S(aralkyl), -S(cycloalkyl), N0 2 , NH 2 , -NH(lower alkyl), -NHR 4 , -NR R 5 , -NH(acyl), -N(lower alkyl) 2 , -NH(alkenyl), -NH(alkynyl), -NH(aralkyl), -NH(cycloalkyl), -N(acyl) 2 , azido, cyano, SCN, OCN, NCO or halo;each m is independently 0, 1 or 2;and . alternatively, R 8 and R 13 , R 9 and R 13 , R 9 and R π or R 10 and R 12 can come together to form a bridged compound selected from the group consisting of optionally substimted carbocycle or optionally substimted heterocycle;or alternatively, R 12 and R 13 or R 9 and R 10 can come together to form a spiro compound selected from the group consisting of optionally substimted or optionally substituted heterocycle.
  7. 7
    A compound of the Formula (XIII) or (XIV):or a pharmaceutically acceptable salt thereof, wherein: R 3 is selected from the group consisting of H;mono-, di-, and tri-phosphate or a stabilized phosphate prodrug;acyl;a sulfonate ester;optionally substimted alkyl sulfonyl;optionally substimted arylsulfonyl;a lipid;an amino acid;a carbohydrate;a peptide;cholesterol;and a pharmaceutically acceptable leaving group which when administered in vivo is capable of providing a compound wherein R 3 is independently H, or mono-, di- or triphosphate;B indicates a spiro compound selected from the group consisting of optionally substituted carbocycle or optionally substimted heterocycle;Base is selected from the group consisting of: (g) (h) (i) and wherein each R', R", R'" and R"" are independently selected from the group consisting of H, OH, substimted or unsubstimted alkyl, substimted or unsubstimted alkenyl, substimted or unsubstituted alkynyl, cycloalkyl, Br-vinyl, -O-alkyl, O-alkenyl, O- alkynyl, O-aryl, O-aralkyl, -O-acyl, O-cycloalkyl, NH 2 , NH-alkyl, N-dialkyl, NH-acyl, N-aryl, N-aralkyl, NH-cycloalkyl, SH, S-alkyl, S-acyl, S-aryl, S- cycloalkyl, S-aralkyl, F, Cl, Br, I, CN, COOH, CONH 2 , CO 2 -alkyl, CONH-alkyl, CON-dialkyl, OH, CF 3 , CH 2 OH, (CH 2 ) m OH, (CH 2 ) m NH 2 , (CH 2 ) m COOH, (CH 2 ) m CN, (CH 2 ) m N0 2 and (CH 2 ) m CONH 2 ;m is 0 or 1;W is C-R" orN;T and V independently are CH or N;Q is CH, -CCl, -CBr, -CF, -CI, -CCN, -C-COOH, -C-CONH 2 , or N;Qi and Q 2 independently are N or C-R;R is H, alkyl, or acyl;and Q3, Q4, Q5 and Q 6 independently are N or CH.
  8. 8
    A compound of Formula (XIX), (XX), (XXI) (XXfl) or (XXIII):(XIX) (XX) (XXI) (XXII) (XXIII) or a pharmaceutically acceptable salt thereof, wherein: A is selected from the group consisting of optionally substimted lower alkyl, cycloalkyl, alkenyl, alkynyl, CH 2 OH, CH 2 NH 2 , CH 2 NHCH 3 , CH 2 N(CH 3 ) 2 , CH 2 F, CH 2 C1, CH 2 N 3 , CH 2 CN, CH 2 CF 3 , CF 3 ,CF 2 CF 3 , CH 2 CO 2 R, (CH 2 ) m COOH, (CH 2 ) m COOR, (CH 2 ) m CONH 2 , (CH 2 ) m CONR 2 , and (CH 2 ) m CONHR;Y is selected from the group consisting of H, optionally substimted lower alkyl, cycloalkyl, alkenyl, alkynyl, CH 2 OH, CH 2 NH 2 , CH 2 NHCH 3 , CH 2 N(CH 3 ) 2 , CH 2 F, CH 2 C1, CH 2 N 3 , CH 2 CN, CH 2 CF 3 , CF 3 ,CF 2 CF 3 , CH 2 CO 2 R, (CH 2 ) m COOH, (CH 2 ) m COOR, (CH 2 ) m CONH 2 , (CH 2 ) m CONR 2 , and (CH 2 ) m CONHR;R is H, alkyl or acyl;X is selected from the group consisting of -OH, optionally substimted alkyl, cycloalkyl, alkenyl, alkynyl, -O-alkyl, -O-alkenyl, -O-alkynyl, -O-aryl, -O-aralkyl, -O- cycloalkyl-, O-acyl, F, Cl, Br, I, CN, NC, SCN, OCN, NCO, NO 2 , NH 2 , N 3 , NH-acyl, NH-alkyl, N-dialkyl, NH-alkenyl, NH-alkynyl, NH-aryl, NH-aralkyl, NH-cycloalkyl, SH, S-alkyl, S-alkenyl, S-alkynyl, S-aryl, S-aralkyl, S-acyl, S-cycloalkyl, CO -alkyl, CONH-alkyl, CON-dialkyl, CONH-alkenyl, CONH-alkynyl, CONH-aralkyl, CONH- cycloalkyl, CH 2 OH, CH 2 NH 2 , CH 2 NHCH 3 , CH 2 N(CH 3 ) 2 , CH 2 F, CH 2 C1, CH 2 N 3 , CH 2 CN, CH 2 CF 3 , CF 3 ,CF 2 CF 3 , CH 2 CO 2 R, (CH 2 ) m COOH, (CH 2 ) m COOR, (CH 2 ) m CO- NH 2 , (CH 2 ) m CONR 2 , (CH 2 ) m CONHR, an optionally substituted 3-7 membered carbocyclic, and an optionally substimted 3-7 membered heterocyclic ring having O, S and/or N independently as a heteroatom taken alone or in combination;m is 0 or 1;R 3 is selected from the group consisting of H;mono-, di-, and tri-phosphate or a stabilized phosphate prodrug;substituted or unsubstimted alkyl;acyl;a sulfonate ester;optionally substimted alkyl sulfonyl;optionally substituted arylsulfonyl;a lipid;an amino acid;a carbohydrate;a peptide;cholesterol;and a pharmaceutically acceptable leaving group which when administered in vivo is capable of providing a compound wherein R 3 is independently H, or mono-, di- or triphosphate;and Base is a non-natural base selected from the group of: wherein: each R', R", R'" and R"" is independently selected from the group consisting of H, OH, substimted or unsubstituted alkyl, substituted or unsubstimted alkenyl, substimted or unsubstituted alkynyl, cycloalkyl, Br-vinyl, -O-alkyl, O-alkenyl, O- alkynyl, O-aryl, O-aralkyl, -O-acyl, O-cycloalkyl, NH 2 , NH-alkyl, N-dialkyl, NH-acyl, N-aryl, N-aralkyl, NH-cycloalkyl, SH, S-alkyl, S-acyl, S-aryl, S- cycloalkyl, S-aralkyl, F, Cl, Br, I, CN, COOH, CONH 2 , CO 2 -alkyl, CONH-alkyl, CON-dialkyl, OH, CF 3 , CH 2 OH, (CH 2 ) m OH, (CH 2 ) m NH 2 , (CH 2 ) m COOH, (CH 2 ) m CN, (CH 2 ) m N0 2 and (CH 2 ) m CONH 2 ;m is 0 or 1;W is C-R" orN;T and V independently are CH or N;Q is CH, -CCl, -CBr, -CF, -CI, -CCN, -C-COOH, -C-CONH 2 , orN;Qi and Q 2 independently are N or C-R"";and Q 3 , Q 4 , Q 5 and Q 6 independently are N or CH;with the proviso that in bases (g) and (i), R', R"" are not H, OH, or NH 2 ;and Q, T, V, Q 2 , Q 5 and Q 6 are not N.
  9. 9
    A compound of Formula (LX):(IX) or rtable salt thereof, wherein: R 1 , R 2 and R 3 are independently H;phosphate;straight chained, branched or cyclic alkyl;acyl;CO-alkyl;CO-aryl;CO-alkoxyalkyl;CO-aryloxyalkyl;CO-substituted aryl;sulfonate ester;benzyl, wherein the phenyl group is optionally substimted with one or more substituents;alkylsulfonyl;arylsulfonyl;aralkylsulfonyl;a lipid;an amino acid;a carbohydrate;a peptide;cholesterol;or a pharmaceutically acceptable leaving group which when administered in vivo is capable of providing a compound wherein R 1 , R 2 and/or R 3 is independently H or phosphate;X is O, S, SO 2 or CH 2 ;Base* is a purine or pyrimidine base;R 12 is C(Y 3 ) 3 ;Y 3 is independently H, F, Cl, Br or I;and R 13 is fluoro.
  10. 12
    A method for the treatment of a host infected with a Flaviviridae virus, comprising administering an effective treatment amount of a compound as claimed in any one of claims 1-11, or a pharmaceutically acceptable salt thereof.
  11. 27
    A pharmaceutical composition comprising an effective amount to treat a Flaviviridae infection of a compound, or a pharmaceutically acceptable salt thereof, of any of claims 1 to 11 in a pharmaceutically acceptable carrier .
  12. 44
    A compound or a pharmaceutically acceptable salt thereof, of any of claims 1 to 11 for the treatment of a host infected with a Flaviviridae virus.
  13. 47
    The use of a compound or a pharmaceutically acceptable salt thereof, of any of claims 1 to 11 in the manufacture of a medicament for the treatment of a host infected with a Flaviviridae virus.