Extracorporeal removal of microvesicular particles

CIPO

EXTRACORPOREAL REMOVAL OF MICROVESICULAR PARTICLES

FIELD

[00011 The present disclosure relates to the field of therapeutic methods and devices for the extracoiporeal removal of microvesicular particles, useful, for example, for reversing immune suppression in a subject in need thereof (e.g., a cancer patient) through extracorporeal means.

BACKGROUND

[0002] Immunological control of neoplasia has been a topic of intense investigation dating back to the days of William Coley, who at the beginning of the 20^lh century reported potent induction of tumor remission through administration of various non-specific immune stimulatory' bacterial extracts which came to be known as “Coley’s Toxins’* (1). Suggestions of the ability to induce anticancer immunological responses also came from experiments in the 1920s demonstrating that the vaccination with non-viable tumor cells mounts a specific “resistance to secondary challenge, although at the time, the concept of MHC matching was not known and it was possible that the secondary resistance was only a product of allogeneic sensitization (2). Although the field of cancer immunotherapy has been very controversial throughout the 20^th Century, with some authors actually claiming that immunological responses are necessary for tumor growth (3), the age of molecular biology has demonstrated that indeed immune responses are capable of controlling tumors from initiating, as well as in some cases inhibiting the growth of established tumors.

(0003] Originally demonstrated in the murine system, the concept of a productive anti-tumor response was associated with a cytokine profile termed Th I, whereas an ineffective anti-tumor response was associated with Th2. The prototypic method of assessing Thl activity was by quantitation of the cytokine IFN-γ (4). At an epigenetic level it is known that the chromatin structure of Thl and Th2 cells is distinct, thus providing a solid foundation that once a naïve T cell has differentiated into a Thl or Th2 cell, the silenced and activated parts

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PCT/US2007/006101 of the chromatin are passed to progeny cells, thus the phenotype is stable (5). Associated with such chromatin changes is the activation of the multi-gene inducing transcription factors GATA-3 (6), STAT6 (7,8) in Th2 cells, and T-bct (9), and STAT4 (10) in Thl cells.

Accordingly studies have been performed using STAT6 knockout mice as a model of an immune response lacking Th2 influences, thus predominated by Thl. Tumors administered to STAT6 knockout animals are either spontaneously rejected (11), or immunity to them is achieved with much higher potency compared to wild-type animals (12). Furthermore immunologically mediated increased resistance to metastasis is observed (13). In agreement with the Thl/Th2 balance, mice lacking STAT4 develop accelerated tumors in a chemicallyinduced carcinogenesis model (14).

[0004] In the clinical situation correlation between suppressed immune responses and a higher incidence of cancer is well established. For example, natural immune deficiency such as the congenital abnormality Chediak-Higashi Syndrome, in which patients have abnormal natural killer cell function, is associated with an overall weakened immune response. In this population, the overall incidence of malignant tumors is 200-300 times greater than that in the general population (15). In another example, a specific polymorphism of the IL-4 receptor gene that is known to be associated with augmented Th2 responses was investigated in an epidemiological study. Multivariate regression analysis showed that the specific genotype of the IL-4R associated with augmented Th2 activity was an independent prognostic factor fire shorter cancer survival and more advanced histopathological grade (16). In addition to inborn genetic abnormalities, the immune suppressive regimens used for posttransplant antirejection effect are associated with a selective inhibition of Thl responses (1719). In support of the concept that suppression of Thl immunity is associated with cancer onset, the incidence of cancer in the post-transplant population is markedly increased in comparison to controls living under similar environmental conditions (20-25). In terms of disease associated immune suppression, HIV infected patients also have a marked predisposition to a variety of tumors, especially, but not limited to lymphomas, as a result of immunodeficiency (26).

[0005] Although the above examples support a relation between immune suppression (or Th2 deviation) and cancer, the opposite situation, of immune stimulation resulting in

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PCT/US2007/006101 anticanccr response, is also documented. Numerous clinical trials using antigen specific approaches such as vaccination with either tumor antigens alone (27,28), tumor antigens bound to immunogens (29,30), tumor antigens delivered alone (31) or in combination with costimulatory molecules by viral methods (32), tumor antigens loaded on dendritic cells ex vivo (33-35), or administration of in vitro generated tumor-reactive T cells (36), have all demonstrated some clinical effects. Unfortunately, to date, there is no safe, reproducible, and mass-applicable method of therapeutically inducing regression of established tumors, or metastasis via immunotherapy. Approved immunotherapeutic agents such as systemic cytokine administration arc associated with serious adverse effects, as well as mediocre responses and applicability to a very limited patient subset

[0006] Accordingly, there is a need in the art to develop successfill immunotherapy capable of stimulating specific immune responses that only target neoplastic tissue, or components of the host tissue whose activity is necessary for the progression of neoplasia (ie endothelium). The development of such a successful immunotherapy is hindered by suppression of the host immune system by the cancer. Experiments in the 1970s demonstrated the existence of immunological “blocking factors” that antigen-specifically inhibited lymphocyte responses. Some of this early work involved culturing autologous lymphocytes with autologous tumor cells in the presence of third party healthy serum. This culture resulted in an inhibition of growth of the autologous tumor as a result of the lymphocytes. Third party lymphocytes did not inhibit the growth of the tumor. Interestingly when autologous scrum was added to the cultures the lymphocyte mediated inhibition of tumor growth was not observed. These experiments gave rise to the concept of antigenspecific “blocking factors” found in the body of cancer patients that incapacitate successful tumor immunity (37-39).

[0007] More recent demonstration of tumor-suppression of immune function was seen in experiments showing that T cell function is suppressed in terms of inability to secrete interferon gamma due to a cleavage of the critical T cell receptor transduction component, the TCR-zeta chain. Originally, zeta chain cleavage was identified in T cells prone to undergo apoptosis. Although a wide variety of explanations have been put forth for the cleavage of the zeta chain, one particular cause was postulated to be tumor-secreted microvesicles.

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[0008] Microvesicles secreted by tumor cells have been known since the early 1980s. They were estimated to be between 50-200 nanometers in diameter and associated with a variety of immune inhibitory effects. Specifically, it was demonstrated that such microvesicles could not only induce T cell apoptosis, but also block various aspects of T cell signaling, proliferation, cytokine production, and cytotoxicity. Although much interest arose in said microvesicles, little therapeutic applications developed since they were uncharacterized at a molecular level.

(0009] Research occurring independently identified another type of microvesicuiar-like structures, which were termed “exosomes”. Originally defined as small (i.e., 80-200 nanometers in diameter), exosomes were observed initially in maturing reticulocytes. Subsequently it was discovered that exosomes are a potent method of dendritic cell communication with other antigen presenting cells. Exosomes secreted by dendritic cells were observed to contain extremely high levels of MHC I, MHC Π, costimulatory molecules, and various adhesion molecules. In addition, dendritic cell exosomes contain antigens that said dendritic cell had previously engulfed. The ability of exosomes to act as “mini-antigen presenting cells” has stimulated cancer researchers to pulse dendritic cells with tumor antigens, collect exosomes secreted by the tumor antigen-pulsed dendritic cell, and use these exosomes for immunotherapy. Such exosomes were seen to be capable of eradicating established tumors when administered in various murine models. The ability of dendritic exosomes to potently prime the immune system brought about the question if exosomes may also possess a tolerance inducing or immune suppressive role. Since it is established that the exosome has a high concentration of tumor antigens, the question arose if whether exosomes may induce an abortive T cell activation process leading to anergy. Specifically, it is known that numerous tumor cells express the T cell apoptosis inducing molecule Fas ligand.

[0010] Fas ligand is an integral type Π membrane proteinbelonging to the TNF family whose expression is observed in a variety of tissues and cells such as activated lymphocytes and the anterior chamber in the eye. Fas ligand induces apoptotic cell death in various types of cells target cells via its corresponding receptor, CD95ZAPO1. Fas ligand not only plays important roles in the homeostasis of activated lymphocytes, but it has also been implicated in establishing immune-privileged status in the testis and eye, as well as a mechanisms by which

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PÇT/US2007/006101 tumors escape immune mediated killing. Accordingly, given the expression of Fas ligand on a variety of tumors, we and others have sought, and successful demonstrated that Fas ligand is expressed on exosomes secreted by tumor cells (40).

[0011] Due to the ability of exosomes to mediate a variety of immunological signals, the model system was proposed that at the beginning of the neoplastic process, tumor secreted exosomes selectively induce antigen-specific T cell apoptosis, through activating the T cell receptor, which in turn upregulates expression of Fas on the T cell, subsequently, the Fas ligand molecule on the exosome induces apoptosis. This process may be occurring by a direct interaction between the tumor exosome and the T cell, or it may be occurring indirectly by tumor exosomes binding dendritic cells, then subsequently when T cells bind dendritic cells in lymphatic areas, the exosome actually is bound by the dendritic cell and uses dendritic cell adhesion/costimulatory molecules to form a stable interaction with the T cell and induce apoptosis. In the context of more advanced cancer patients, where exosomes reach higher concentrations systemically, the induction of T cell apoptosis occurs in an antigen-nonspecific, but Fas ligand, MHC I-dependent manner.

[0012] The recent recognition that tumor secreted exosomes are identical to the tumor secreted microvesicles described in the 1980s (41), has stimulated a wide variety of research into the immune suppressive ability of said microvesicles. Specifically, immune suppressive microvesicles were identified not only in cancer patients (42,43), but also in pregnancy (4446), transplant tolerance (47,48), and oral tolerance (49,50) situations.

[0013] Previous methods of inducing anti-cancer immunity have focused on stimulation of either innate or specific immune responses, however relatively little work has been performed clinically in terms of de-repressing the immune functions of cancer patients. Specifically, a cancer patient having tolerance-inducing exosomes has little chance of mounting a successful anti-tumor immune response. This may be one of the causes for mediocre, if not outright poor, results of current day immunotherapy.

[0014] Others have attempted to de-repress the immune system of cancer patients using extracorporeal removal of “blocking factors”. Specifically, Lentz in United States Patent 4,708,713 describes an extracorporeal method of removing proteins approximately 200 kDa, 5

CA 3061952 2019-11-1Ô which are associated with immune suppression. Although Lentz has generated very promising results using this approach, the approach is: a) not-selective for specific inhibitors; b) theoretically would result in loss of immune stimulatory cytokines; c) is not applicable on a wide scale; and d) would have no effect against tumor-sccrcted microvesicles which are much larger than 200 kDa.

SUMMARY |0015] The recently discovered properties of microvesicles in general, and tumor microvesicles specifically, make them a very promising target for extracorporeal removal. Properties such as upregulated expression of MHC I, Fas ligand, increased affinity towards lectins, and modified sphingomyelin content allow for use of extracorporeal devices to achieve their selective removal. Additionally, tire size of microvesicles would allow for non-selective removal either alone or as one of a series of steps in selective removal.

|0016| In accordance with the present disclosure, there are provided methods of immune stimulation and/or immune de-repression using extracorporeal techniques to remove microvesicles from circulation.

(0017] In one aspect, the present disclosure relates to methods of removing microvesicles from the circulation of a subject in need thereof (e g., cancer patients), thereby de-repressing immune suppression present in said subjects. Accordingly, the present disclosure teaches the use of various extracorporeal devices and methods of producing extracorporeal devices for use in clearing microvesicle content in subjects in need thereof. Said microvesicles may be elaborated by the tumor itself, or may be generated by non-malignant cells under the influence of tumor soluble or contact dependent interactions. Said microvesicles may be directly suppressing the host immune system through induction of T cell apoptosis, proliferation inhibition, incapacitation, energy, deviation in cytokine production capability or cleavage of the T cell receptor zeta chain, or alternatively said microvesicles may be indirectly suppressing the immune system through modification of function of other immunological cells such as dendritic cells, NK cells, NKT cells and B cells. Said microvestcles may be suppressing the host antitumor immune response either in an antigenspecific or an antigen-nonspecific manner, or both.

[0018] Disclosed herein is an adjuvant, and/or neoadjuvant therapy that may be used in conjunction with currently used cancer treatments that require a functional immune response for efficacy; cancer treatments that stimulate the immune response of a subject in need thereof in an antigen-specific manner, cancer treatments that stimulate the immune response of a subject in need thereof in an antigen-nonspecific manner, or in extracorporeal treatment of cancer through selecting the novel target of tumor associated microvesicles.

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[0019] Also disclosed herein are beads or other types of particles that can form a matrix outside of a hollow fiber filter, said matrix component having a size greater than pores of said hollow fiber filter, and said beads or other types of particles being bound to agents that capture microvesicles.

[0020] Also disclosed herein are improvements in extracorporeal treatment of cancer through selecting the novel target of tumor associated microvesicles containing unique properties tliat are not found on microvesicles found in non-caneer patients.

[0021] Also disclosed herein are specific affinity devices, particularly immunoadsorption devices, and methods useful for removal of cancer associated microvesicles from cancer patients. Specifically, immunoadsorption devices use proteins with affinity to components of the tumor associated microvesicles. Said proteins include antibodies such as antibodies to Fas ligand, MHC I, MHC Π, CD44, placenta! alkaline phosphatase, TSG-101, MHC I-peptide complexes, MHC Π-peptide complexes, or proteins found to be present on the extenor of microvesicles contributing to immune suppression found in a cancer patient. Contemplated within this disclosure are proteins that act as ligands for the microvesicular proteins, said proteins may be currently in existence, or may be generated by in silico means based on known qualities of microvesicle-specific proteins.

[0022] Methods and devices for treating cancer are disclosed herein that are based on the utilization of specific affinity adsorption of microvesicles that are associated with the cancerous state. Affinity adsorbents useful herein are both immunoadsorbents and non-immune-based specific affinity chemical adsorbents. More specifically, adsorption can be accomplished based on specific properties of the cancer associated microvesicles, one said property is preferential affinity to lectins and other sugar-binding compounds.

[0023) In one particular embodiment, a device for extracorporeal treatment of blood or a blood fraction such as plasma is disclosed. This device has a sorbent circulation circuit, which adheres to and retains microvesicles, and a blood circulation circuit through which blood cells flow unimpeded. The device may be constructed in several variations that would be clear to one skilled m the art. Specifically, the device may be constructed as a closed system in a manner that no accumulating reservoir is needed and the sorbent circulation system accumulates the microvesicles, while non-microvcsiclc matter is allowed to flow back into the blood circulation system and subsequently returned to the patient. Alternatively, the device may use an accumulator reservoir that is attached to the sorbent circulation circuit and connected in such a manner so that waste fluid is discarded, but volume replenishing fluid is inserted back into the blood circulation system so the substantially microvesicle purified blood that is reintroduced to said patient resembles a hematocrit of significant homology to the blood that was extracted from said patient.

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[0024] Various aspects of the disclosure relate to a medical device for use in removal of microvesicular particles from whole blood or a component thereof from a subject, said device comprising: a) an intake conduit for receiving said whole blood or component thereof; and b) a singular or plurality of antibody species, a singular or plurality of proteins, or a singular or plurality of aptamers which bind said microvesicular particles. The system may further comprise: c) a system for reintroduction of said whole blood or component thereof into the subject under physiologically acceptable conditions. Also claimed is use of such a device for removal of microvesicular particles from such blood or component thereof.

[0025] Various aspects of the disclosure relate to a medical device for use in removal of exosomes from blood or a component thereof from a subject, the device comprising: a) an inlet for receiving said blood or component thereof; b) a chamber in fluid communication with the inlet, the chamber comprising a singular or plurality of antibody species, a singular or plurality of proteins, or a singular or plurality of aptamers, which bind said exosomes; and c) an outlet in fluid communication with the chamber. The outlet may be for return of the blood or component thereof to the subject. Also claimed is use of such a device for removal of exosomes from such blood or component thereof.

|0026| Various aspects of the disclosure relate to a medical device for use in capturing exosomes having

HIV antigens from a subject, the device comprising: a) an intake chamber for receiving the exosomes having HIV antigens; and b) a substrate comprising anti-HIV monoclonal antibodies for contacting the exosomes having HIV antigens. The subject may be a patient having spontaneous T cell apoptosis. Also claimed is use of such a device for capturing exosomes having HIV antigens. Also claimed are isolated exosomes having HIV antigens bound to anti-HIV monoclonal antibodies, wherein said anti-HIV monoclonal antibodies are conjugated to a substrate.

[0027] Various aspects of the disclosure relate to a medical device for use in capturing exosomes having an MHC-I antigen or an MHC-II antigen from a subject, the device comprising: a) an intake chamber for receiving said exosomes having the MHC-I antigen or the MHC-II antigen; and b) a substrate for contacting the exosomes that comprises monoclonal antibodies specific for the MHC-I antigen or the MHC-II antigen. The subject may be a cancer vaccination candidate. Also claimed is use of such a device for capturing such exosomes. Also claimed are isolated exosomes that comprise an MHC-I antigen or an MHC-II antigen bound to an antibody that is specific for said MHC-I antigen or said MHC-II antigen, wherein said antibody is conjugated to a substrate.

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[0027a] Various aspects of the disclosure relate to a method of capturing an exosome from a patient comprising: contacting an exosome from said patient with an affinity device that comprises an affinity absorbent comprising a lectin thereby capturing said exosome on the affinity absorbent.

[0027b] Various aspects of the disclosure relate to a method of capturing an exosome from a patient on a surface that comprises a lectin, said method comprising contacting an exosome from said patient with a surface that comprises a lectin thereby capturing said exosome.

[0027c] Various aspects of the disclosure relate to a medical device for use in removal of immune suppressive microvesicular particles from whole blood or a component thereof from a subject, said device comprising: a) an intake conduit through which whole blood or component thereof enters; b) an agent capable of binding immune suppressive microvesicular particles found within said blood or component thereof, wherein said agent comprises a lectin and said agent is configured for contacting said blood or component thereof; and c) a system for réintroduction of contacted blood or component thereof into a subject under physiologically acceptable conditions, said contacted blood or component thereof containing substantially fewer immune suppressive microvesicular particles compared to the whole blood or component thereof that enters into the intake conduit.

[0027d] Various aspects of the disclosure relate to a method of capturing exosomes that comprise an MHC-I antigen or an MHC-II antigen comprising:(a) selecting a patient suspected of receiving a benefit from the capture and removal of exosomes; (b) contacting whole blood, plasma, or serum from said selected patient with a substrate that comprises an antibody that is specific for an MHC-I antigen or an MHC-II antigen; and (c) capturing the exosomes that comprise the MHC-I antigen or the MHC-II antigen on the substrate.

[0027e] Various aspects of the disclosure relate to a method of capturing exosomes that comprise an MHC-I antigen or an MHC-II antigen comprising contacting whole blood, plasma, or serum from a patient that has a greater exosomal content compared to a healthy person with a substrate that comprises an antibody that is specific for an MHC-I antigen or an MHC-II antigen with exosomes that comprise the MHC-I antigen or the MHC-II antigen obtained from said patient.

[0027ft Various embodiments of the claimed invention relate to a method of capturing an exosome from a patient on a surface that comprises a lectin, said method comprising: contacting a sample from said patient, wherein the sample comprises the exosome, with a surface that comprises a lectin thereby capturing the exosome.

8a

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[0027g] Various embodiments of the claimed invention relate to a method of capturing an exosome from a patient comprising: contacting a sample from said patient, wherein the sample comprises the exosome, with an affinity device that comprises an affinity absorbent comprising a lectin thereby capturing the exosome on the affinity absorbent.

Date Reçue/Date Received 2021-05-10

DETAILED DESCRIPTION

[0028] For the purposes of advancing and clarifying the principles of the subject matter disclosed herein, reference will be made to certain embodiments and specific language will be used to describe said embodiments. It will nevertheless be understood and made clear that no limitation of the scope of the claimed invention is thereby intended. The alterations, further modifications and applications of the principles of the claimed invention as described herein serve only as specific embodiment, however one skilled in the art will understand that the following are indeed only specific embodiments for illustrative purposes, and will derive similar types of applications upon reading and understanding this disclosure.

|0029| In accordance with one aspect of the present disclosure, there are provided methods of removing microvesicular particles from a subject in need thereof, said methods comprising:

a) establishing an extracorporeal circulation system which comprises contacting the whole blood or components thereof with a single or plurality of agents capable of binding microvesicles found within said blood or components thereof; and

b) returning said blood or components thereof into the original blood, said blood or blood components containing substantially less immune suppressive particles in comparison to the blood or blood components originally residing in the blood.

|00301 Methods disclosed herein are useful, for example, for dc-repressing immune response, which includes restoration of one or more of the following: T cell, natural killer (NK) cell, natural killer T (NKT) cell, gamma-delta T cell, and B cell function. Presently preferred applications of such methods include restoration of one or more of the following: T cell, natural killer (NK) cell, natural killer T (NKT) cell, gamma-delta T cell, and B cell function includes prevention of apoptosis: it is especially preferred that restoration of one or more of the following; T cell, natural killer (NK) cell, natural killer T (NKT) cell, gamma-delta T cell, and B cell function includes restoration and/or endowment of activity capable of inhibiting cancer progression.

[0031] Inhibiting cancer progression as contemplated herein is accomplished in a variety of ways, e.g., by one or more of the following: direct cytolysis of tumor cells, direct induction of tumor cell apoptosis, induction of tumor cell cytolysis through stimulation of intrinsic host antitumor responses, induction oftumor cell apoptosis through stimulation of intrinsic host antitumor responses, inhibition oftumor cell metastasis, inhibition oftumor cell proliferation, and indudion of senescence in the tumor cell.

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[0032] Exemplary tumor cells contemplated for treatment herein are selected from the group of cancers consisting of: soft tissue sarcomas, kidney, liver, intestinal, rectal, leukemias, lymphomas, and cancers of the brain, esophagus, uterine cervix, bone, lung, endometrium, bladder, breast, larynx, colon/rectum, stomach, ovary, pancreas, adrenal gland and prostate.

(0033) Agents capable of binding microvesicles contemplated for use herein are selected from the group consisting of one or more of the following: a) a singular or plurality of antibody species; b) a singular or plurality of proteins (e.g., lectins); c) a singular or plurality of aptamers, d) a surface that selectively restricts microvesicles from passage, and e) a surface with selective adhesion to microvesicles.

(0034) Antibodies contemplated for use herein have a specificity for proteins selected from the group consisting of one or more of the following: Fas ligand, MHC I, MHCII, CD44, placental alkaline phosphatase, TSG-101, MHC I-peptide complexes, MHC Π-peptide complexes, and proteins found to be present on the exterior of microvesicles contributing to immune suppression found in a cancer patient. Presently preferred antibodies are specific to Fas ligand, MHC I, and the like.

[00351 Binding proteins contemplated for use herein are selected from the group comprising consisting of one Of more of the following: Fas, T cell Receptor, protein extracts isolated from T cells, protein extracts isolated from dendritic cells, and proteins found to possess affinity for binding proteins found on microvesicles associated with immune suppression.

[0036] Surfaces contemplated for use herein that selectively restrict passage of said microvesicles typically have pore sizes in the range of about 20-400 nanometers in size, with surfaces having pore sized in the range of about 40-300 nanometers in size being preferred, with surfaces having a pore size in the range of about 50-280 nanometers in size being especially preserred.

[0037] Surfaces with selective adhesion to microvesicles contemplated for use herein can be coated with a single compound, or a plurality of compounds that bind particles that are

CA 3061952 2019-11-1Ô enriched in sphingomyelin and with a lower level of phosphatidylcholine as found in the cellular membranes of non-malignant cells.

[0038] In accordance with another aspect disclosed herein, agents capable of binding microvesicles are immobilized on a porous hollow fiber membrane. For example, agents capable of binding microvesicles are immobilized on the porous exterior of the hollow fiber membrane.

[0039] In accordance with another aspect disclosed herein, existing methods and devices of extracorporeal treatment of blood can be integrated (in whole or in part) with the above-described methods to augment ex vivo clearance of microvesicles in a physiologically applicable manner. For example, existing methods for extracorporeal treatment of blood can be selected from one or more of the following: a) hemofiltration; b) hemodialysis; and c) hémodiafiltration. A presently preferred existing method for extracorporeal treatment of blood comprises apheresis followed by filtration.

[0040] In accordance with another embodiment disclosed herein, there are provided medical devices useful for the removal of cancer associated microvesicles from the blood of a cancer patient, said device comprising:

a) an intake conduit through which blood of a cancer patient in need of treatment enters;

b) a single or plurality of matrices capable of adhering to microvesicles causative of cancer associated immune suppression; and

¢) a system for réintroduction of said blood into the patient in need thereof, whereby said blood is reintroduced under physiologically acceptable conditions.

[0041] In one aspect of the above-described medical device, the matrices surround a plurality of hollow fiber filters. Preferably, the hollow fiber filters have a diameter of sufficient size to allow passage of blood cells through the lumen, and diffusion of particles between 80-300 nanometers in size.

[0042] In another aspect of the above-described medical device, a micro vesicle binding agent is chemically reacted with a high-molecular weight substrate and placed on the exterior of said hollow fibers so as to bind non-blood cell liquids permeating through the pores of said hollow fibers. Exemplary microvesicle binding agents include one or more of the following: a) a singular or plurality of antibody species; b) a singular or plurality of proteins (e.g., lectins); c) a singular or

CA 3061952 2019-11-1Ô plurality of aptamers, d) a surface that selectively restricts microvesicles from passage, and e) a surface with selective adhesion to microvesicles.

{0043] Exemplary antibodies contemplated for use herein have a specificity for proteins selected from the group consisting of one or more of the following: Fas ligand, MHC I, MHCII, CD44, placental alkaline phosphatase, TSG-101, MHC I-peptide complexes, MHC II-peptide complexes, and proteins found to be present on the exterior of microvesicles contributing to immune suppression found in a cancer patient. Presently preferred antibodies are specific to Fas ligand, MHC I, and the like.

t (0044] Exemplary proteins contemplated for use in devices disclosed herein are selected from the group consisting of one or more of foe following: Fas, T cell Receptor, protein extracts isolated from T cells, protein extracts isolated from dendritic cells, and proteins found to possess affinity for binding proteins found on microvesicles associated with immune suppression.

(0045] In accordance with another embodiment disclosed herein, there are provided methods of potentiating foe immunologically mediated anticancer response elicited by vaccination to tumor antigens, said methods comprising :

a) immunizing a subject in need thereof using a single or combination of tumor antigens;

b) removing immunosuppressive microvesicles from the sera of said subject by extracorporeal means; and

c) adjusting the amount of removal of immune suppressive microvesicles based on immune stimulation desired.

(0046] In accordance with yet another embodiment disclosed herein there are provided methods of enhancing foe immune response of a subject in need thereof through the removal of microvesicular particles found in systemic circulation of said subject, said methods comprising:

a) establishing an extracorporeal circulation system which comprises contacting foe whole blood or components thereof with a single or plurality of agents capable of binding microvesicles found within said blood or components thereof; and

b) returning said blood or components thereof into foe subject, said blood or blood components containing substantially less immune suppressive particles in comparison to foe blood or blood components originally residing in said subject.

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[0047] Enhancing immune response as contemplated herein includes one or more of the following: upregulation of T cell, natural killer (NK) cell, natural killer T (NKT) cell, gamma-delta T cell, and B cell function. In a presently preferred embodiment, upregulation of one or more of T cell, natural killer (NK) cell, natural killer T (NKT) cell, gamma-delta T cell, and B cell function includes prevention of apoptosis. In yet another preferred embodiment, upregulation of one or more of T cell, natural killer (NK) cell, natural killer T (NKT) cell, gamma-delta T cell, and B cell function includes enhancing and/or endowment of activity capable of inhibiting cancer progression.

(0048] Inhibiting cancer progression contemplated herein is accomplished In a variety of ways, e.g., by direct cytolysis of tumor cells, direct induction of tumor cell apoptosis, induction of tumor cell cytolysis through stimulation of intrinsic host antitumor responses, induction of tumor cell apoptosis through stimulation of intrinsic host antitumor responses, inhibition of tumor cell metastasis, inhibition of tumor cell proliferation, and induction of senescence in the tumor cell.

[0049] Tumor cells contemplated for treatment in accordance with the present disclosure are selected from the group of cancers consisting of: soft tissue sarcomas, kidney, liver, intestinal, rectal, leukemias, lymphomas, and cancers of the brain, esophagus, uterine cervix, bone, lung, endometrium, bladder, breast, larynx, colon/rectum, stomach, ovary, pancreas, adrenal gland and prostate.

[0050] Agents capable of binding micro vesicles contemplated for use herein are selected from the group consisting of one or more of the following: a) a singular or plurality of antibody species; b) a singular or plurality of proteins (e.g., lectins); c) a singular or plurality of aptamers, d) a surface that selectively restricts microvesicles from passage, and e) a surface with selective adhesion to microvesicles.

(0051] Antibodies having specificity for proteins contemplated for use herein are selected from the group consisting of one or more of the following: Fas ligand, MHC I, MHC II, CD44, placental alkaline phosphatase, TSG-101, MHC I-peptide complexes, MHC Il-peptide complexes, and proteins found to be present on the exterior of micro vesicles contributing to immune suppression found in a cancer patient. Presently preferred antibodies are specific to Fas ligand, MHC I, and the like.

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[0052] Proteins contemplated for use herein are selected from the group consisting of one or more of the following: Fas, T cell Receptor, protein extracts isolated from T cells, protein extracts isolated from dendritic cells, and proteins found to possess affinity for binding proteins found on microvesicles associated with immune suppression.

(0053] Surfaces that selectively restrict passage of said microvesicles contemplated for use herein typically have a pore size in the range of about 20-400 nanometers in size, with pores sizes in the range of about 40-300 nanometers in size being preferred, and pore sizes in the range of about 50280 nanometers in size being especially preferred.

[0054] Surfaces with selective adhesion to microvesicles contemplated for use herein are coated with a variety of agents, e.g., a single compound, or plurality of compounds that bind particles that are enriched in sphingomyelin and with a lower level of phosphatidylcholine as found in the cellular membranes of non-malignant cells.

[0055] In one aspect, the above-described agents capable of binding microvesicles are immobilized on a porous hollow fiber membrane, e.g., on the porous exterior of the hollow fiber membrane.

[0056] In another aspect disclosed herein, existing methods and devices of extracorporeal treatment of blood are integrated (in whole or in part) for augmenting ex vivo clearance of microvesicles in a physiologically applicable manner. Exemplary existing methods for extracorporeal treatment of blood are selected from one or more of the following: a) hemofiltration; b) hemodialysis; and c) hémodiafiltration. A presently preferred existing method for extracorporeal treatment of blood comprises apheresis followed by filtration.

[0057] In accordance with yet another embodiment disclosed herein, there are provided methods of enhancing the immune response of a subject in need thereof through the removal of microvesicular particles found in systemic circulation of said subject, said methods comprising:

a) establishing an extracorporeal circulation system which comprises contacting the whole blood or components thereof with a single or plurality of agents capable of binding microvesicles found within said blood or components thereof, said agents being in turn bound to a plurality of objects;

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b) performing a filtration step such that said objects of a defined size are captured within said extracorporeal circulation system; and

c) returning said blood or components thereof into the subject, said blood or blood components containing substantially less immune suppressive particles in comparison to the blood or blood components originally residing in said sibject

[0058] Enhancing immune response contemplated herein includes one or more of the following: upregulation of T cell, natural killer (NK) cell, natural killer T (NKT) cell, gamma-delta T cell, and B cell function. It is presently preferred that upregulation of one or more of T cell, natural killer (NK) cell, natural killer T (NKT) cell gamma-delta T cell, and B cell function includes prevention of apoptosis. It is also presently preferred that upregulation of one or more of T cell, natural killer (NK) cell, natural killer T (NKT) cell gamma-delta T cell, and B cell function includes enhancing and/or endowment of activity capable of inhibiting cancer progression.

[0059] Inhibiting cancer progression contemplated herein is accomplished by one or more of the following: direct cytolysis of tumor cells, direct induction of tumor cell apoptosis, induction of tumor cell cytolysis through stimulation of intrinsic host antitumor responses, induction of tumor cell apoptosis through stimulation of intrinsic host antitumor responses, inhibition of tumor cell metastasis, inhibition of tumor cell proliferation, and induction of senescence in the tumor cells.

[0060] Tumor cells contemplated for treatment in accordance with the present disclosure are selected from the group of cancers consisting of: soft tissue sarcomas, kidney, liver, intestinal, rectal, leukemias, lymphomas, and cancers of the brain, esophagus, uterine cervix, bone, lung, endometrium, bladder, breast, larynx, colon/rectum, stomach, ovary, pancreas, adrenal gland and prostate.

[0061] Agents capable of binding microvesicles contemplated for use herein are selected from the group consisting of one or more of the following: a) a singular or plurality of antibody species; b) a singular or plurality of proteins (e.g., lectins); c) a singular or plurality of aptamers, d) a surface that selectively restricts microvesicles from passage, and e) a surface with selective adhesion to microvesicles.

CA 3061952 2019-11-1Ô

[0062] The plurality of objects contemplated for use herein comprise beads manufactured to a specific size or range of sizes in a manner so that said agents capable of binding microvesicles may be conjugated to said plurality of objects. Preferably such beads have a defined size range to restrict their movement out of said extracorporeal circulation system, e.g., the beads are of a size range larger than pores of hollow fibers used in extracorporeal systems so as to restrict their movement out of said extracorporeal systems. In one aspect, such beads possess properties responsive to an electromagnetic field, such that subsequent to said beads contacting said microvesicles, said beads may be removed or sequestered by said electromagnetic field in order to substantially prevent movement of said beads out of said extracorporeal system.

[0063] Examples of beads contemplated for use herein are MACS™ beads alone or conjugated with compounds in order to allow said beads to form complexes with said agents capable of binding microvesicles, Dynal™ beads alone or conjugated with compounds in order to allow said beads to form complexes with said agents capable of binding microvesicles, and the like.

[0064] Antibodies contemplated for use herein have a specificity for proteins selected from a group consisting of one or more of the following: Fas ligand, MHC I, MHC Π, CD44, placental alkaline phosphatase, TSG-101, MHC I-peptide complexes, MHC II-peptide complexes, and proteins found to be present on the exterior of microvesicles contributing to immune suppression found in a cancer patient. Presently preferred antibodies arc specific to Fas ligand, MHC 1, and the like.

[0065] Proteins contemplated for use herein are selected from the group consisting of one or more of the following: Fas, T cell Receptor, protein extracts isolated from T cells, protein extracts isolated from dendritic cells, and proteins found to possess affinity for binding proteins found on microvesicles associated with immune suppression.

[0066] Surfaces that selectively restrict passage of said microvesicles typically fall in the range of about 20-400 nanometers in size, with microvesicles falling in the range of about 40-300 nanometers in size being presently preferred, and microvesicles in the range of about 50-280 nanometers in size being especially preferred.

CA 3061952 2019-11-1Ô (0067] Exemplary surfaces with selective adhesion to microvesicles are coated with a single compound, or plurality of compounds that bind particles that are enriched in sphingomyelin and with a lower level of phosphatidylcholine as found in the cellular membranes of non-malignant cells.

[0068] In accordance with another aspect disclosed herein, agents capable of binding microvesicles can be immobilized on a porous hollow fiber membrane, e.g., on the porous exterior of the hollow fiber membrane.

[00691 In accordance with still another aspect of the present disclosure, existing methods and devices of extracorporeal treatment of blood can be integrated (in whole or in part) with the abovedescribed methods to augment ex vivo clearance of microvesicles in a physiologically applicable manner. Exemplary methods contemplated for use herein include; a) hemofiltration; b) hemodialysis; and c) hémodiafiltration, with a preferred method including apheresis followed by filtration.

[0070] In accordance with various aspects of the present disclosure, extracorporeal removal of microvesicles can be performed through selective adhesion of said microvesicles to matrices or substrates that are conjugated to agents possessing higher affinity to microvesicles with a high sugar content, in comparison to microvesicles of a lower sugar content.

[0071] In accordance with yet another embodiment of the present disclosure, there are provided methods of extracorporeally removing microvesicles from a subject in need thereof, said method comprising passing said subject’s whole blood, or separated blood components, through a system capable of selectively binding and retaining microvesicles based on one or more of size, charge, affinity towards lectins, or affinity towards molecules that are known to be present on said microvesicles.

[0072] In accordance with a further embodiment of the present disclosure, there are provided methods of extracorporeally removing microvesicles from a subject in need thereof, said methods comprising passing saidsubject’s whole blood, or separated blood components, through a system capable of non-selectively binding and retaining microvesicles based on one or more of size, charge,

CA 3061952 2019-11-1Ô affinity towards lectins, or affinity towards molecules that are known to be present on said microvesicles.

(0073] In accordance with a still further embodiment of the present disclosure, there are provided methods of extracorporeally removing microvesicles from a subject in need thereof, said methods comprising passing said subject’s whole blood, or separated blood components, through a system capable of selectively binding and retaining microvcsicles based on similarities between properties of microvesicles and membranes of cancer cells.

(0074] In accordance with yet another embodiment of the present disclosure, there are provided methods of extracorporeally removing microvesicles from a subject in need thereof, said methods comprising passing said subject's whole blood, or separated blood components, through a system capable of non-selectively binding and retaining microvesicles based on similarities between properties of microvesicles and membranes of cancer cells.

(0075] When carrying out the above-described methods, the similarities between cancer associated micro vesicles and membranes of cancer cells include ability to bind a lectin or plurality of lectins. Reference to lectins herein includes GNA, NPA, Conconavalin A and cyanovirin, with a presently preferred lectin being Conconavalin A.

(0076] One embodiment of the present disclosure relates to methods that can be used for extracorporeal treatment of blood or a blood fraction for the removal of microvesicles associated with immune suppression in a cancer patient. Blood is run through an extracorporeal circulation circuit that uses a hollow fiber cartridge with the membranes of said hollow fibers having sufficient permeability for the microvesicles found in the blood to be removed through the membrane of the hollow fibers and into an area outside of the fibers containing a substrate that is bound to a single or plurality of agents capable of adhering to said microvesicles in a manner such that said microvesicles are attached to said agent and do not substantially re-enter the hollow fibers. Within the knowledge of one skilled in the art are available numerous types of hollow fiber systems. Selection of said hollow fiber system is dependent on the desired blood volume and rate of passage of said blood volume through the hollow fiber system. Specifically, hollow fiber cartridges may be used having lengths of 250 mm and containing 535 hollow fibers supplied by Amicon, and having the fiber dimensions : LD. 180 micron and O.D. 360 micron, and the total contact surface area in the 18

CA 3061952 2019-11-1Ô cartridge is 750 cm². Alternatively, the Plasmaflux P2 hollow fiber filter cartridge (sold by Fresenius) or Plasmart PS60 cartridges (sold by Medical srl) may be used. These and other hollow fiber systems are described by Ambrus and Horvath in United States Patent 4,714,556. Hollow fiber cartridges such as described by Tullis in United States Patent Application 20040175291 may also be used. Furthermore, said hollow fiber cartridges and affinity cartridges in general are thought in United States Patents 4,714,556,4,787,974 and 6,528,057.

[0077] Regardless of hollow fiber system used, the concept needed for application of the present subject matter, is that said hollow fiber filters are required to allow passage of blood cells through the interior of said hollow fiber, and allow diffusion of microvesicles to the exterior. In order to allow such diffusion, the pores on the membrane of the hollow fiber need to be of a diameter sufficient to allow particles ranging from the size of 20 nanometers to 500 nanometers in diameter. More specifically, the pores on the membrane of the hollow fiber need to be of a diameter sufficient to allow particles ranging from the size of 50 nanometers to 300 nanometers in diameter. Even more specifically, the pores on the membrane of the hollow fiber need to be of a diameter sufficient to allow particles ranging from the size of 80 nanometers to 200 nanometers in diameter. During experimentation with different hollow fibers, one skilled in the art would find it usefill to utilize particles of similar size ranges as the microvesicles in order to calibrate and quantitate the ability of various pore sizes of hollow filters. One method of performing this is through the utilization of commercially available MACS™ Beads (Milteny Biotech), which have a size of 60 nanometers. Fluorescent, spherical latex beads ranging in size from 25 to 1000 nm are also available for this purpose (e.g., from Duke Scientific (Palo Alto, CA)).

[0078] The substrate or matrix to be used herein needs to allow sufficient permeation of flow so that non-cellular blood components that enter the space exterior to the hollow fiber are distributed throughout the substrate or matrix material, so that substantial contact is made between the microvesicles permeating the hollow fiber filter and the microvesicle-binding agent that is attached to the substrate or matrix. Suitable substrates or matrices are known to one skilled in the art. Said substrates or matrices include silica gel, dextran, agarose, nylon polymers, polymers of acrylic acid, co-polymers of ethylene and maleic acid anhydride, aminopropylsilica, aminocelite, glass beads, silicate containing diatomaceous earth or other substrates or matrices known in the art. Examples of such are described in the following patents: Lentz United States Patent 4,708,713, Motomura United 19

CA 3061052 2019-11-1Ô

States Patent 5,667,684, Takashima et al United States Patent 5,041,079, and Porath and Janson United States Patent 3,925,152. The agents that are attached to said substrate are chosen based on known affinity to cancer associated microvesiclcs. Said agents may be capable of non-specifically binding to said microvesicles, in that binding occurs both from non-tumor associated microvesicles, and from tumor associated microvesicles, or conversely, said agents may display a certain degree of selectivity for exosomes derived from tumors.

[0079] In one embodiment said agents non-specifically bind all microvesicles due to common expression of molecules such as MHCI on microvesicles that are associated with conditions of neoplasia, and microvesicles that are not. Specifically, an agent that would bind both types of microvesicles would be an antibody specific to the non-polymorphic regions of MHC I. Therefore, in the embodiment in which non-selective removal of microvesicles is sought, anti-MHC I antibodies would be bound to said substrate chosen, and the combination would be placed to reside outside of the hollow fiber filters in order to allow binding of said microvesides to the substrate, however blood cells and other components of the blood would not be removed during the passage of blood through the encased system containing said hollow fiber filters, exterior substrate, and microvesicle binding agent.

[0080] In order to achieve non-specific removal of microvesicles, another embodiment disclosed herein is the use of hollow fiber filters of sufficient size of the pores on the side of the hollow fiber filter for microvesicles to exit, while not allowing blood cells to exit, and passing a continuous solution over said hollow fiber filters in order to clear said microvesicles leaking through the sides of the hollow fiber filters. In such a situation it would be critical to re-introduce the other blood components that escaped the hollow fiber filter, such as albumin, back into the microvesicle purified blood, before returning of the blood to the subject.

[0081] Alternatively, the hollow-fiber cartridge may be sealed as decribed in Ambras. In such a system, both diffusion and convection cause blood fluids (exclusive of blood cells) to pass through the pores in the hollow fibers and into contact with the capture molecules bound to the solid phase matrix. The fluids (e.g. plasma) pass back into the circulation at the distal end of the cartridge through a process known as Starling flow. In this system, there is no significant loss of blood fluids and therefore no need for blood component replacement.

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[0082] In the situations where a substantially specific removal of microvesicles associated with tumors is desired, the said agent bound to said substrate outside of said hollow fiber filters possesses affinity to molecules specifically found on said microvesicles associated with tumors. Said agent may be an antibody to the molecule Fas Ligand, may be a recombinant Fas protein, or may be directed to MHC I, MHC II, CD44, placental alkaline phosphatase, TSG-101, MHC I-peptide complexes, MHC Il-peptidc complexes, and proteins found to be present on the exterior of microvesicles contributing to immune suppression found in a cancer patient. Another embodiment disclosed herein takes advantage of the similarity of tumor membranes with tumor microvesicles and the known high concentration of mannose and other sugars on tumor membranes compared to membranes of non-malignant cells.

[0083] In a situation where microvesicles associated with tumors are meant to be withdrawn with a certain degree of selectivity from the systemic circulation of a subject in need thereof, said agent binding the matrix or substrate may be a lectin. Specific methodologies for use of lectins in removal of viruses are described by Tullis in United States Patent Application 20040175291 and these methodologies may also be used in part or in whole for practicing the present subject matter. In various embodiments disclosed herein, it is important that said systems include means for maintaining the blood at conditions similar to that found in the host, so that upon returning said blood to the host, no adverse reactions occur. In other words, it is within the scope of this disclosure to use technologies that are known to one skilled in the art to maintain blood at physiological ion concentrations, osmolality, pH, hematocrit, temperature, and flow in order to avoid harm being caused to the subject subsequent to reinfusion of blood treated as disclosed herein. Said technologies are well known to one skilled in the art.

[0084] Another embodiment disclosed herein is a system for extracorporeal clearance of microvesicles; either selectively removing tumor associated microvesicles, or non-selectively microvesicles that are found in healthy subjects as well as tumor bearing subjects. Such a system comprises several interacting components whose primary purpose is the formation of a functional circuit capable of depleting microvesicles in order to de-repress, or in some cases augment the immune response of a cancer patient. More specifically, a means for separating blood from a subject in need thereof (e.g., a cancer patient) into plasma and cellular elements is used. Appropriate means for such separation are available commercially, and well-known to the skilled 21

CA 3061952 2019-11-1Ô artisan. They include, for example, the Exorim System, the Fresenius Hemocare Apheresis system, and the Gambo Prisma System. Plasma purified through said separation means is then run over an array of filtration means, said filtration means possessing a higher affinity towards tumor associated microvesicles in comparison to other molecules. Said filtration means includes, in some embodiments, microvesicle binding agents immobilized to a substrate.

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[O085| Said microvesicle binding agents include but are not limited to antibodies, proteins, or compounds with selective affinity towards microvesicles associated with the cancer or not associated. Examples of such agents include antibodies to Fas ligand, MHC I, MHC II, CD44, placental alkaline phosphatase, TSG-101, MHC Lpeptide complexes, MHC II-peptide complexes, or proteins found to be present on the exterior of microvesicles contributing to immune suppression found in a cancer patient, as well as lectins such as conconavalin A, phytohcmagluttanin, GNA, NPA, and cyanovirin. Said substrate is selected from known substrates previously used in the are, these include, for example SEPHAROSE™ made by Amersham-Biosciences, Upsala, Sweden, as well as acrylamide and agarose particles or beads. The substrates used should have the properties of being able to tightly bind the microvesicle binding agent, the ability to be produced in a sterile means, and be compatible with standard dialysis/cxtracorporcal tubings.

[0086] In other embodiments, the agent capable of binding the tumor associated or nontumor associated microvesicles is immobilized to a filter membrane or capillary dialysis tubing, where the plasma passes adjacent to, or through, the membranes to which said agent capable of binding the tumor associated or non-tumor associated microvesicles are bound. Suitable filters include those mentioned previously with respect to separation of blood components. These may be the same filters, having immobilized agents capable of binding microvesicles (either tumor associated or non-associated, or may be arranged in sequence, so that the first filter divides the blood components and the secondary, tertiary and additional filter removes one or more of the components of said cancer associated microvesicles. Conjugation of the agent capable of binding the tumor associated or non-associated microvesicle to said substrate maybe accomplished by numerous means known in the art. Said means include avidin-streptavidin, cynanogen bromide coupling, the use of a linker such as a polyethylene glycol linker. A means of returning the blood together with plasma Substantially cleared of tumor associated microvesicles back to said subject is also provided in the invention. Preferred means are chosen by one of skill in the art based on the desired application, extent of microvesicle removal desired, patient condition, extracorporeal method chosen, and microvesiclc-binding agent chosen.

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[0087] In one embodiment, extracorporeal removal of microvesicles is performed in a cancer patient in order to accelerate the rate of tumor-specific T cell proliferation and activation. It is known in the art that tumors contain antigens that are specific to the tumor (e.g. the bcr-abl product p210 in CML), expressed on other tissues but overexpressed on cancer cells (e.g. tyrosinase), or expressed embryonically and re-expressed in the cancer (e.g. telomerase). Vaccination to such antigens has been demonstrated to induce immune response, and in some cases generation of cytotoxic T lymphocytes (CTL). Unfortunately, despite much effort in development of cancer vaccines, clinical translation has been slow, with most cancer vaccines not demonstrating efficacy in the double-blind setting. In order to increase efficacy of cancer vaccines, it is important that the cancer patient has an immunological environment in which proper T cell activation may occur. It is known that high numbers of microvesicles are present in the circulation of patients with a wide variety of histologically differing tumors including melanoma (52), ovarian (53), colorectal (54), and breast (55). Importantly, such microvesicles are known to induce suppression of immunity via direct mechanisms such as induction of T cell death via FasL expression (52), through indirect mechanisms such as stimulation of myeloid suppressor cell activity (54). Indeed, numerous mechanisms are known for suppression of T cell immunity by cancer-secreted microvesicles (5659). Accordingly, in one embodiment a cancer patient is treated with a therapeutic cancer vaccine either prior to, concurrently, or subsequent to undergoing extracorporeal removal of exosomes. Said cancer vaccine may be used for stimulation of immune responses to antigens that are found either exclusively on the tumor, to antigens found on non-malignant tissues but at higher concentration on the tumor, or antigens whose presence is required for tumor functionality. In a specific embodiment, tumor vaccination is performed to peptides, polypeptides, glycoproteins, peptidomimetics, or combinations thereof. Tumor vaccination may be performed in the context of a cell therapy, such as, for example, administration of dendritic cells that are pulsed with tumor antigens or tumor lysates. Tumor vaccines are commonly known in the art and are described in the following reviews (60-64). Examples of tumor antigens that may be used herein include CDK-4/ma MUM-1/2, MUM-3, Myosin/m, Redox-perox/m, MART-2/m, Actin/4/ma, ELF2-M, CASP-8/ma, HLA-A2-R17OJ, HSP70-2/ma, CDKN2A, CDC27a, TPI, LDLR/FUT Fibronectin/m, RT-PTPK/ma, BAGE, GAGE, MAGE, telomerase, and tyrosinase, and fragments thereof.

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[0088] In one specific embodiment, a patient with ovarian cancer is selected for treatment with cancer vaccination. Said patient plasma is assessed for exosomal content based on methods known in the art, as for example described in the following study (65). In specific method involves the following procedure: ETDA treated plasma is purified from peripheral blood by centrifugation at 500 g for half-hour. Separation of cellular debris is accomplished by a second centrifugation at 7,000g for an additional half-hour. Exosomes are subsequently collected by centrifugation at 100,000g for 3 hours, followed by a washing step in PBS under the same conditions. Using this procedure, approximately 0.5 - 0.6 ug/ml of exosomal protein is detected from healthy volunteers as visualized by the Bradfort Assay (Bio-Rad, Hercules, CA) (66). In contrast, the plasma of cancer patients typically contains a higher exosomal yield, ranging between 200-500 ug/ml. This is in agreement with studies describing high concentrations of “membrane vesicles'’ found systemically circulating in cancer patients (65). For the practice of this embodiment, patients with high exosomal content compared to healthy volunteers are selected. For example, patients with exosomal content above two fold the concentration of exosomes in healthy volunteers may be treated. In another embodiment, patients with exosomal contented 10-fold higher than exosomal content of healthy volunteers are treated. In another embodiment, patients with higher exosomal content than healthy volunteers which have spontaneous T cell apoptosis present are selected for treatment. Protocols for assessment of spontaneous T cell apoptosis are known in the art and described, for example by Whiteside’s group (67). Assessment of exosome immune suppressive activity may be quantified by culture of exosomes purified from patient plasma with a Fas expressing T cell line such as the Jurkat clone E6.1 (ATCC Manassas, VA). These cells may be cultured in standard conditions using the method described by Andreola et al (52) in order to develop a standardized assay. Briefly 10⁶/ml Jurkat cells are seeded in 24-well plates in 10% FBS RPMI1640 and co-cu1tured with escalating concentrations of exosomes from healthy

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PCT/US2007/006101 volunteers, as well as cancer patients. Apoptosis of Jurkat cells may be quantified by assessment of Annexin-V staining using flow cytometry.

(0089] Patients displaying elevated numbers of exosomes, and/or apoptotic T cells, and/or possessing exosomes capable of inducing T cell apoptosis are selected for extracorporeal removal of said exosomes. In one preferred embodiment, patent blood is passaged over an extracorporeal circuit for a time sufficient to substantially reduce exosome burden.

Reduction of exosome burden is quantified as described above. Correlation can be made between exosome concentration and spontaneous T cell apoptosis. When reduction of both plasma exosome concentration and spontaneous T cell apoptosis is achieved, said patient may be immunized with a tumor vaccine. Alternatively, patients may have exosome removal performed without immunization with a tumor vaccine so as to allow for endogenous antitumor responses to be derepressed. Alternatively patients may be treated with a nonspecific immune stimulator, said immune stimulator maybe a small molecule (e.g. muramyl dipeptide, thymosin, 7,8-disubstituted guanosine, imiquimod, detoxified lipopolysaccharide, isatoribine or alpha-galactosylceramide), aprotein (e.g. IL-2, IL-7, IL-8, IL-12, IL-15, IL-18, IL-21, IL-23, IFN-a, b, g, TRANCE, TAG-7, CEL-1000, bacterial cell wall complexes, or LIGHT), or an immunogeneic nucleic acid (e.g. short interfering RNA targeting the mRNA of immune suppressive proteins, CpG oligonucleotides, Poly IC, unmethylatcd oligonucleotides, plasmid encoding immune stimulatory molecules, or chromatin-purified DNA). Said non-specific immune stimulants are known in the art and in some cases are already in clinical use. Said non-specific immune stimulants in clinical use include interlcukin-2, interferon gamma, interferon alpha, BCG, or low dose cyclophosphamide.

(0090] In another embodiment extracorporeal removal of exosomes is performed in conjunction with chemotherapy in order to derepress immune suppression caused by exosomes, while at the same time allowing said chemotherapy to perform direct tumor inhibitory functions. Alternatively, extracorporeal removal of exosomes may be utilized to remove increased exosomes caused by tumor cell death during chemotherapy use. Numerous types of chemotherapies are known in the ait that may be utilized in the context of the present invention, these include: alkylating agents such as thiotepa and cyclosphosphamide (CYTOXAN.TM.); alkyl sulfonates such as busulfan, improsulfan and piposulfan; aziridines 26

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PCT/US2007/006101 such as benzodopa, carboquone, meturedopa, and uredopa; ethylenimines and mcthylamelamincs including altretamine, triethylenemelamine, triethylenephosphoramide, triethylenethiophosphoramide and trimethylolomelamine; nitrogen mustards such as chlorambucil, chlomaphazine, cholophosphamide, estramustine, ifosfamide, mechlorethamine, mechlorethamine oxide hydrochloride, melphalan, novembichin, phenesterine, prednimustine, trofosfamide, uracil mustard; nitrosureas such as carmustine, chlorozotocin, fotemustine, lomustine, nimustine, ranimustine; antibiotics such as aclacinomysins, actinomycin, authramycin, azaserine, bleomycins, cactinomycin, calicheamicin, carabidn, carminomycin, carzinophilin, chromomycms, dactinomycin, daunorubicin, detorubicin, 6-diazo-S-oxo-L-norleucine, doxorubicin, epirubicin, esorubicin, idanibicin, marcellomycin, mitomycins, mycophenolic acid, nogalamycin, olivomycins, peplomydn, potfiromycin, puromydn, quelamycin, rodorubicin, streptonigrin, streptozociu, tubacidin, ubenimex, zinostatin, zorubicin; anti-metabolites such as methotrexate and 5fluorouracil (5-FU); folic acid analogues such as denopterin, methotrexate, pteropterin, trimetrexate; purine analogs such as fludarabme, 6-mercaptopurine, thiamiprine, thioguanine; pyrimidine analogs such as ancitabine, azacitidine, 6-azauridine, carmofiir, cytarabine, dideoxyuridine, doxifluridine, enocitabine, floxuridine, 5-FU; androgens such as calusterone, dromostanolone propionate, epitiostanol, mepitiostane, testolactone; anti-adrenals such as aminoglutéthimide, mitotane, triiostane; folic acid replenisher such as frolinic acid; aceglatone; aldophosphamide glycoride; aminolevulinic add; amsacrine; bestrabucil; bisantrene; edatraxate; dcfbfàminç; dcmccolcinc; diazîquone; elfomithine; elliptinium acetate; etoglucid; gallium nitrate; hydroxyurea; lentinan; lonidamine; mitoguazone; mitoxantrone; mopidamol; nitracrine; pentostatin; phenamet; pirarubicin; podophyllinic add; 2-ethylhydrazide; procarbazine; PSK.RTM.; razoxanc; sizofiran; spirogermanium; tenuazonic acid; triaziquone; 2,2', 2 -trichlorotriethylamine; urethan; vindesine; dacarbazine; mannomustine; mitobronitol; tnitolactol; pipobroman; gacytosine; arabinoside (Ara-C); cyclophosphamide; thiotepa; taxanes, e.g. paclitaxel (TAXOL.RTM.., Bristol-Myers Squibb Oncology, Princeton, NJ.) and docetaxel (TAXOTERE.RTM, Rhone-Poulenc Rorer, Antony, France); chlorambucil; gemcitabine; 6-thioguanine; mercaptopurine; methonexate; platinum analogs such as cisplatin and carboplatin; vinblastine; platinum; etoposide (VP-16); ifosfamide; mitomycin C; mitoxantrone; vincristine; vinorelbine; navelbine; novantrone;

CA 3061952 2019-11-1Ô teniposide; daunomycin; aminopterin; xeloda; ibandronate; CPT-11; topoisomerase inhibitor RFS 2000; difluoromethylomithine (DMFO); retinoic acid; esperamicins; and capecitabine.

[0091] In one embodiment frequency and length of extracorporeal treatment is performed based on the amount of time (or blood volume) needed for reduction of exosome concentration to a level significant to correlate with reduction in spontaneous T cell apoptosis. In one embodiment a reduction of spontaneous T cell apoptosis by approximately 20% in comparison to preextracorporeal treatment values is judged as sufficient. In another embodiment a reduction of spontaneous T cell apoptosis by approximately 50% in comparison to pre-extracorporeal treatment values is judged as sufficient. In another embodiment a reduction of spontaneous T cell apoptosis by approximately 90% in comparison to pre-extracorporeal treatment values is judged as sufficient.

[0092] Although assessment of spontaneous T cell apoptosis is used in some embodiments for judging the frequency, and/or time, and/or blood volume needed for extracotporeal treatment, other means of measuring immune responses may be used. For example restoration of cytokine production (68), T cell proliferation (69), or TCR-zeta chain expression (70) are all known in the art and described in such references.

[0093] One skilled in the art will appreciate that these methods and devices are and may be adapted to carry out the objects and obtain the ends and advantages mentioned, as well as those inherent therein. The methods, procedures, and devices described herein are presently representative of preferred embodiments and are exemplary and are not intended as limitations on the scope of the claimed invention. Changes therein and other uses will occur to those skilled in the art which are encompassed within the scope of this disclosure. It will be apparent to one skilled in the art chat varying substitutions and modifications may be made to the claimed invention without departing from the scope of this disclosure.

EXAMPLES

[0094] There are numerous methods of conjugating antibodies to substrates that are used for packing the Hollow Fiber Cartridge. In the examples, the binding of proteins and other chemical binding agents is generally performed using variations of the glutaraldehyde techniques described by Ambrus and Horvath in United States Patent 4,714,556.

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Example 1. Preparation of GNA covalently coupled to Agarose using Cyanogen Bromide.

[0095] Cyanogen bromide (CNBr) activated agarose was used for direct coupling essentially according to Cuatrecasas, et al (Cuatracasas, Wilchek and Anfinsen. Proc Natl Acad Sei USA 61(2): 636-643,1968). In brief, 1 ml of GNA at a concentration of iOmg/ml in 0.1M NaHCOj pH 9.5 is added to I ml CNBr activated agarose (Sigma, St. Louis, MO) and allowed to react overnight in the cold. Care must be taken to maintain alkaline pH to prevent the potential release of HCN gas. When the reaction is complete, unreacted materials are aspirated and the lectin coupled agarose washed extensively with sterile cold PBS. The lectin agarose affinity matrix is then stored cold until ready for use. Alternatively, GNA agarose is available commercially from Vector Labs (Burlingame, CA)

Example 2. Preparation of an Antibody Covalently Coupled to Glass Beads via Schiffs base and Reduction with Cyanoborohydride.

[0096] The affinity matrix was prepared by a modification of the method of Hermanson (Hermanson. Bioconjugate Techniques: 785, 1996). Anti-HIV monoclonal antibody dissolved to a final protein concentration of 1 Omg/ml in 0.1M sodium borate pH 9.5 is added to aldehyde derivatized silica glass beads (BioConnexant, Austin TX). The reaction is most efficient at alkaline pH but will go at pH 7-9 and is normally done at a 2-4 fold excess of protein over coupling sites. To this mixture is added lOul 5M NaCNBH₃ in IN NaOH (Aldrich, St Louis, MO) per ml of coupling reaction and the mixture allowed to react for 2 hours at room temperature. At the end of the reaction, remaining unreacted aldehyde on the glass surfaces are capped with 20ul 3M ethanolamine pH 9.5 per ml of reaction. After 15 minutes at room temperature, the reaction solution is decanted and the unbound proteins and reagents removed by washing extensively in PBS. The matrix is the stored in the refrigerator until ready for use.

Example 3, Preparation of an Exosome Specific Antibody Covalently Coupled to Chromosorb (Diatomaceous Earth) Using Glutaraldehyde.

[0097] Preparation of aminated diatomaceous earth is accomplished using y-aminopropyl triethoxysilane (GAPS) (Sigma Chemical, St. Louis, MO) and Chromosorb 60/80 mesh. Although other grades of diatomaceous earth may be used. Chromosorb of this mesh size (200-300 microns in

CA 3061952 2019-11-1Ô diameter) is often used to prevent small particulates from entering the sample through the largest available pore sizes found in hollow-fiber cartridges used for plasma separation (~0.5 micron).

[0098] Amino Chromosorb was prepared by suspension in an excess of 5% aqueous solution of GAPS in an overnight reaction. Aminated-Chromosorb was washed free of excess reagent with water and ethanol and dried overnight in a drying oven to yield an off white powder. One gram of the powder was then suspended in 5 ml 5% glutaraldehyde (Sigma) for 30 minutes. Excess glutaraldehyde was then removed by filtration and washing with water until no detectable aldehyde remained in the wash using Schiff’s reagent (Sigma Chemical). The filter cake was then resuspended in 5 ml of Sigma borohydride coupling buffer containing 2-3 mg/ml of the antibody and the reaction allowed to proceed overnight at 4 degrees C. At the end of the reaction, excess antibody is washed off and the remaining aldehyde reacted with ethanolamine as described. After final washing in sterile PBS, the material was stored cold until ready for use.

Example 4. Preparation of an AntiFas-Ligand Specific Antibody Covalently Coupled to Polyacrylate Beads Using Glutaraldehyde and Azide.

[0099] Anti-Fas Ligand antibody (NOK-1 mouse anti-human as described by Kayagaki et al in United States Patent 6,946,255) is dissolved in a concentration of 50-200 mg./ml. with human serum albumin in a phosphate-buffered aqueous medium of pH 7.0. Glutaraldehyde at a concentration of 0.05-10% is added to the solution which is then incubated for 1-24 hours, but preferably 12 hours, at 4.degree. C. Excess glutaraldehyde that remains in the reaction mixture is removed by addition of glycine, or other suitable compounds known in the art, to the solution at the end of incubation. This solution is then diafiltered through a membrane having a minimal retentively value of

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500,000 molecular weight. The diafiltered antibody-bearing product is dissolved in saline or dialysis fluid. To obtain a reactive polymer to act as a substrate for said anti-Fas Ligand antibody, polyacrylic acid polymer beads ( >1 micron in diameter) are activated by the azide procedure (51). The ratios of antibody to reactive polyester are selected to avoid excessive reaction,. If this ratio is appropriately adjusted, the spacing of the antibody along the polymer chain will allow a binding of the antibody with the antigen found on microvesicle without untoward steric hindrances and the antibody conjugate is intended to remain soluble.

100100] Said antiFas Ligand antibody conjugates are subsequently loaded into a hollow fiber filter cartridge, on the exterior of said hollow fibers. The external filling ports are then sealed. This allows for passage of blood cell components through the lumen of said hollow fibers. Blood plasma containing the microvessicles, convects and diffuses through pores in the hollow fibers into the extralumenal space where it contacts the antibodypolyacrylate conjugates. Treated plasma inside the cartridge diffuses back into the general circulation leaving the microvesicles attached to the insolublized anti-FAS Ligand antibody.

Example 5. Patient Treatment Using AntiFas-Ugand Specific Antibody Covalently Coupled to Po/yacryfate Beads from Example 4.

[00101] A patient with stage IV imresectable colorectal cancer presents with a suppressed ability to produce interferon-gamma subsequent to ex vivo stimulation of peripheral blood mononuclear cells with anti-CD3. In order to de-repress flic ability of said patients immune response to produce interferon gamma, said patient is treated with an extracorporeal device capable of removing microvesicles that contribute, at least in part, to the suppressed production of interferon gamma. Said medical device is manufactured as in Example 4:

[00102] The modified hollow fiber filter is connected to a veno-venous dialysis machine and connected to the circulation of said patient for a time period necessary to remove microvesicles associated with suppression of interferon gamma production. Vascular access is obtained via a double-lumen catheter in the subclavian or femoral vein. For this specific application the hollow fiber hemofilter is connected to a flow-controlled blood roller

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PCT/US2007/WW101 pump, the blood flow rate (Q0 is set at 100 to 400 ml/min, (more preferably at 200 to 300 ml/min depending on the cardiovascular stability of the patient). The dialysis circuit is anticoagulated with a continuous heparin infusion in the afferent limb. The activated clotting time (ACT) is measured every hour, and the heparin infusion is adjusted to maintain the ACT between 160 and 180 seconds. Said patient is monitored based on the concentration of microvesicles expressing Fas Ligand in circulation, as well as by ability of said pariait lymphocytes to produce interferon gamma in response to mitogenic or antibody stimulation.

[00103] Upon upregulation of interferon gamma production, said patient can be administered a tumor vaccine with the goal of antigen-specifically stimulating host immune responses in an environment conducive to immune-mediated clearance of the primary and/or metastatic tumors.

Example 5. Removal of Exosomes from Blood Using Plasmapheresis.

[00104] Selective removal of exosomes from blood may be accomplished using plasmapheresis combined with affinity capture using any of the matrices described in Examples 1·5. Plasmapheresis is done using either centrifugal separation or hollow-fiber plasma separation methods. The blood circuit is anticoagulated with a continuous heparin infusion in the afferent limb. The activated clotting time (ACT) is measured every hour, and foe heparin infusion is adjusted to maintain the ACT between 160 and 180 seconds.

[00105] The plasma obtained from the patient may be discarded and replaced with a combination of normal saline and fresh plasma from healthy donors (i.e. plasma exchange). Alternatively, foe plasma containing the miciovesicles can be pumped at 60-100 ml/min over foe affinity matrix which captures the exosomes. The cleaned plasma may then be reinfused into the patient. A similar system (foe Prosoiba column) has been described for the removal of immunoglobulin complexes from patients with drug refractory rheumatoid arthritis (71, 72). The clearance of the micro vesicles may be monitored based on the concentration of tnicrovesides expressing Fas Ligand remaining in circulation.

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Example 1, Direct Coupling of an Aptamer Specific for Tumor Exosomes to the Hollow-Fibers.

(00106] In hollow-fiber based devices, more intimate contact with the blood is obtained by direct coupling of the capture agent to the hollow-fibers. Aptamers are short pieces of synthetic DNA and its chemical derivatives which bind to specific antigens (i.e. DNA antibodies). The process for generating aptamers is described in detail in United States Patent 5,567,588 (1996; issued to Gold et al). In this example the isolation of Fas Ligand protein specific DNA aptamers and the production of hollow-fiber coupled aptamer affinity matrices arc described. Purified Fas Ligand protein is chemically coupled to agarose using Amino-Link agarose (Pierce Chemical Co.).

AminoLink Coupling Gel is a 4% crosslinked beaded agarose support, activated to form aldehyde functional groups which develops a stable bond, in the form of a secondary amine, between the gel and the protein with coupling efficiencies of 85% between pH 4-10. In this example 2ml Fas Ligand protein (1 mg/ml in coupling buffer) is applied to the Aminolink gel for 7 hours at 4 degrees C. Unreacted protein is then washed off with 25 volumes of phosphate buffered saline (PBS) and the product material stored cold until ready for use.

(00107] Next DNA oligonucleotides, typically 80 nucleotides long are prepared containing the following elements. First a PCR primer site of 20 nucleotides on both the 5’ and 3’ ends and a 40 base segment in the middle of the molecule prepared with a random mixture of bases. This generates a very large number of DNA species from which the specific aptamer (i.e. DNA antibody) may be selected. The DNA capable of binding selectively to the target protein Fas Ligand is then selected by multiple rounds of binding to the immobilized Fas Ligand interspersed with polymerase chain reaction (PCR) amplification on the recovered fragments. The final material with high selectivity for Fas Ligand may then be cloned and sequenced to yield a consensus sequence. Copies of the consensus sequence are then chemically synthesized with 5’ or 3’ terminal amino groups and coupled to a solid phase such as described in Example 3.

[00108| In this specific example, the chemically synthesized FasL specific aptamer containing a terminal amine is to be coupled directly to polysulfone hollow-fibers in situ in a plasma separator cartridge. To accomplish this, the cartridge is first exposed to a solution of 4% human serum albumin (HSA) reacted overnight at 4 degrees C. The adsorbed HSA is then cross-linked with

CA 3061952 2019-11-1Ô glutaraldehyde. Excess glutaraldehyde is then briefly washed out with water. The cartridge is then filled with Sigma cyanoborohydride coupling buffer containing 2-3 mg/ml of the aminated FasL aptamer and reacted overnight at 4 degrees C. At the end of the reaction, excess aptamer is washed off and the remaining unreacted aldehyde reacted with ethanolamine. After final washing in sterile PBS, the cartridge was dried in sterile air, packaged and sterililzed using gamma-irradiation (25-40 kGy) and stored in a cool, dark area until ready for use.

[00109] Those skilled in the art recognize that the aspects and embodiments of the claimed invention may be practiced separate from each other or in conjunction with each other. Therefore, combinations of separate embodiments are within the scope of the invention. All patents and publications mentioned in the specification are indicative of the levels of those skilled in the art to which the claimed invention pertains. The claimed invention illustratively described herein suitably may be practiced in the absence of any element or elements, limitation or limitations which is mit specifically disclosed herein. Thus, for example, in each instance herein any of the terms “comprising,” “consisting essentially of and “consisting of’ may be replaced with either of the other two terms. The terms and expressions which have been employed are used as terms of description and not of limitation, and there is no intention that in the use of such terms and expressions indicates the exclusion of equivalents of the features shown and described or portions thereof. It is recognized that various modifications are possible within the scope of the claimed invention defined by this disclosure. Thus, it should be understood that although the claimed invention has been specifically disclosed by preferred embodiments and optional features, modification and variation of the concepts herein disclosed may be resorted to by those skilled in the art, and that such modifications and variations are considered to be within the scope of the invention defined by this disclosure.

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